BLASTX nr result
ID: Ephedra25_contig00020903
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Ephedra25_contig00020903
(640 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|ABW74566.1| integrase [Boechera divaricarpa] 57 1e-14
emb|CAN65377.1| hypothetical protein VITISV_014188 [Vitis vinifera] 54 2e-14
emb|CAN64779.1| hypothetical protein VITISV_043230 [Vitis vinifera] 53 3e-14
ref|NP_001067439.2| Os11g0199800 [Oryza sativa Japonica Group] g... 54 3e-14
gb|EFA07744.1| hypothetical protein TcasGA2_TC002224 [Tribolium ... 54 5e-14
ref|XP_004293021.1| PREDICTED: uncharacterized protein LOC101310... 59 6e-14
gb|ABR16307.1| unknown [Picea sitchensis] 53 6e-14
emb|CAN75051.1| hypothetical protein VITISV_020117 [Vitis vinifera] 53 9e-14
gb|ACL97384.1| Gag-Pol polyprotein [Medicago truncatula] 54 9e-14
gb|AAG60200.1|AC084763_20 putative gag-pol polyprotein [Oryza sa... 52 1e-13
emb|CAE03128.3| OJ000114_01.9 [Oryza sativa Japonica Group] 52 1e-13
gb|AAN05503.1| Putative gag-pol polyprotein [Oryza sativa Japoni... 52 1e-13
ref|NP_001175469.1| Os08g0248500 [Oryza sativa Japonica Group] g... 52 1e-13
gb|ACI62137.1| polyprotein [Drosophila melanogaster] 53 2e-13
gb|ACL97383.1| Gag-Pol polyprotein [Medicago truncatula] 54 2e-13
gb|ACL97387.1| Gag-Pol polyprotein [Lotus japonicus] 52 2e-13
gb|EEE52905.1| hypothetical protein OsJ_35506 [Oryza sativa Japo... 52 2e-13
gb|AAL79695.1|AC087599_14 putative gag-pol polyprotein [Oryza sa... 51 2e-13
ref|XP_005710287.1| unnamed protein product [Chondrus crispus] g... 62 2e-13
gb|ABA96719.2| retrotransposon protein, putative, unclassified [... 51 3e-13
>gb|ABW74566.1| integrase [Boechera divaricarpa]
Length = 1165
Score = 57.4 bits (137), Expect(2) = 1e-14
Identities = 33/84 (39%), Positives = 45/84 (53%), Gaps = 2/84 (2%)
Frame = -1
Query: 472 GSCHLRVVGCRCYYYI--HIRTKFEAKAHEGVFLGYARGSKAYHIYDPVSCTKLTTHDVT 299
G HLRV G CY I H R K + K+ + +FLGY SK Y +Y+PVS + + +VT
Sbjct: 502 GVSHLRVFGSVCYSLIDAHNRKKLDEKSEKCIFLGYCSQSKGYRLYNPVSGKIVESRNVT 561
Query: 298 FDENDFGKSKSRGEIELTDIQENE 227
FDE + EL +I N+
Sbjct: 562 FDEEAVWTWREGDNGELVEIFVND 585
Score = 48.1 bits (113), Expect(2) = 1e-14
Identities = 23/52 (44%), Positives = 30/52 (57%)
Frame = -2
Query: 636 NRRLVEMMRVMLIEAGMTPGWWGEALETASYLINYIPTKALNFRNPLNVWLG 481
N +VEM R ML E + +W E++ TA YL+N PTKA+ R P W G
Sbjct: 447 NTTVVEMARSMLKERNLPNQFWAESVRTAVYLLNISPTKAVLNRTPYEAWCG 498
>emb|CAN65377.1| hypothetical protein VITISV_014188 [Vitis vinifera]
Length = 738
Score = 54.3 bits (129), Expect(2) = 2e-14
Identities = 34/96 (35%), Positives = 52/96 (54%), Gaps = 3/96 (3%)
Frame = -1
Query: 463 HLRVVGCRCYYYI-HI-RTKFEAKAHEGVFLGYARGSKAYHIYDPVSCTKLTTHDVTFDE 290
+L+ GC C+ YI H+ R K + KA G+F+GY+ SKAY IY P + + + DV F E
Sbjct: 135 NLKTFGCLCFSYIPHVKRDKLDKKAEAGIFIGYSSISKAYRIYLPENNKVIVSRDVKFFE 194
Query: 289 NDFGKSKSRGEIELTDIQENE*HFPVR-VNEWSDLY 185
+ ++ ++E + N PVR SD+Y
Sbjct: 195 LESWSWENDKKLEFQEENANIDDEPVRGTRSLSDIY 230
Score = 50.8 bits (120), Expect(2) = 2e-14
Identities = 22/50 (44%), Positives = 31/50 (62%)
Frame = -2
Query: 636 NRRLVEMMRVMLIEAGMTPGWWGEALETASYLINYIPTKALNFRNPLNVW 487
NR L+EM R +L E G+ +W EA T+ +L+N +PTKAL + P W
Sbjct: 77 NRTLMEMTRCLLHEKGLPKKFWAEAAHTSVFLLNRLPTKALQQKTPFEAW 126
>emb|CAN64779.1| hypothetical protein VITISV_043230 [Vitis vinifera]
Length = 1102
Score = 53.1 bits (126), Expect(2) = 3e-14
Identities = 33/96 (34%), Positives = 52/96 (54%), Gaps = 3/96 (3%)
Frame = -1
Query: 463 HLRVVGCRCYYYI-HI-RTKFEAKAHEGVFLGYARGSKAYHIYDPVSCTKLTTHDVTFDE 290
+L+ GC C+ YI H+ R K + KA +F+GY+ SKAY IY P + + + DV F E
Sbjct: 499 NLKTFGCLCFSYIPHVKRDKLDKKAEAXIFIGYSSISKAYRIYLPENNKVIVSRDVKFFE 558
Query: 289 NDFGKSKSRGEIELTDIQENE*HFPVR-VNEWSDLY 185
++ ++ ++E + N PVR SD+Y
Sbjct: 559 SESWSWENDKKLEFQEENANIDDEPVRGTRSLSDIY 594
Score = 51.6 bits (122), Expect(2) = 3e-14
Identities = 23/52 (44%), Positives = 31/52 (59%)
Frame = -2
Query: 636 NRRLVEMMRVMLIEAGMTPGWWGEALETASYLINYIPTKALNFRNPLNVWLG 481
NR L+EM R +L E G+ +W EA T+ +L+N +PTKAL P W G
Sbjct: 441 NRTLMEMTRCLLHEKGLPKKFWAEAAHTSVFLLNRLPTKALQQXTPFEAWYG 492
>ref|NP_001067439.2| Os11g0199800 [Oryza sativa Japonica Group]
gi|255679875|dbj|BAF27802.2| Os11g0199800 [Oryza sativa
Japonica Group]
Length = 872
Score = 53.5 bits (127), Expect(2) = 3e-14
Identities = 28/61 (45%), Positives = 36/61 (59%), Gaps = 1/61 (1%)
Frame = -1
Query: 472 GSCHLRVVGCRCYYY-IHIRTKFEAKAHEGVFLGYARGSKAYHIYDPVSCTKLTTHDVTF 296
G HLRV GC + + +K + ++ GVF+GYA GSKAY I DP + T HDV F
Sbjct: 812 GVSHLRVFGCLAFVKELGPISKLDDRSTPGVFIGYAEGSKAYRILDPETQRVRTAHDVVF 871
Query: 295 D 293
D
Sbjct: 872 D 872
Score = 51.2 bits (121), Expect(2) = 3e-14
Identities = 24/52 (46%), Positives = 33/52 (63%)
Frame = -2
Query: 636 NRRLVEMMRVMLIEAGMTPGWWGEALETASYLINYIPTKALNFRNPLNVWLG 481
N+ +V M R +L + GM +WGEA+ TA Y++N PTKAL+ R P W G
Sbjct: 757 NQTVVGMARALLKQRGMPAIFWGEAVVTAVYILNRSPTKALDGRTPYEAWHG 808
>gb|EFA07744.1| hypothetical protein TcasGA2_TC002224 [Tribolium castaneum]
Length = 2378
Score = 53.9 bits (128), Expect(2) = 5e-14
Identities = 23/52 (44%), Positives = 34/52 (65%)
Frame = -2
Query: 636 NRRLVEMMRVMLIEAGMTPGWWGEALETASYLINYIPTKALNFRNPLNVWLG 481
NR L++ R +L+E+ + +W EA+ TA+YL N +PTK+LN R P W G
Sbjct: 1750 NRTLLDTARCLLMESKLPSSFWAEAVNTANYLRNRLPTKSLNGRTPYEAWTG 1801
Score = 49.7 bits (117), Expect(2) = 5e-14
Identities = 40/144 (27%), Positives = 61/144 (42%), Gaps = 21/144 (14%)
Frame = -1
Query: 463 HLRVVGCRCYYYIHIRT--KFEAKAHEGVFLGYARGSKAYHIYDPVSCTKLTTHDVTF-- 296
H +V G R +Y R KF+ +A EG+FLGYA SKA+ I+ P T DV
Sbjct: 1808 HCKVFGARVFYLNRERDRGKFDPRAQEGIFLGYAENSKAFRIWSPEKRKVFITRDVKLLK 1867
Query: 295 ----------------DENDFGKSKSRGEIELTDIQENE*HFPVRVNEW-SDLYTEIDPV 167
D + S+ +IEL +Q P+ E+ S++Y I
Sbjct: 1868 DDEDNKDNFDVFPSPPDPEESSSSREFVDIELLSLQNET---PLESTEYDSNIYQRIS-- 1922
Query: 166 ESIIADNSAEGDATIVHDEDVIEE 95
+ ++ A GD DE+ ++
Sbjct: 1923 DEVLTPTQAVGD----DDEEAFQD 1942
Score = 52.4 bits (124), Expect(2) = 4e-13
Identities = 22/52 (42%), Positives = 33/52 (63%)
Frame = -2
Query: 636 NRRLVEMMRVMLIEAGMTPGWWGEALETASYLINYIPTKALNFRNPLNVWLG 481
NR ++ R +L+E+ + +W EA+ TA+YL N +PTK+LN R P W G
Sbjct: 545 NRTFLDTARCLLMESKLPSSFWAEAVNTANYLRNRLPTKSLNGRTPYEAWTG 596
Score = 48.1 bits (113), Expect(2) = 4e-13
Identities = 25/62 (40%), Positives = 34/62 (54%), Gaps = 2/62 (3%)
Frame = -1
Query: 463 HLRVVGCRCYYYIHIRT--KFEAKAHEGVFLGYARGSKAYHIYDPVSCTKLTTHDVTFDE 290
H +V G R +Y R KF+ +A EG+FLGYA SKA+ I+ P T DV +
Sbjct: 603 HCKVFGARVFYLNRERDRGKFDPRAQEGIFLGYAENSKAFRIWSPEKRKVFITRDVKLLK 662
Query: 289 ND 284
+D
Sbjct: 663 DD 664
>ref|XP_004293021.1| PREDICTED: uncharacterized protein LOC101310001 [Fragaria vesca
subsp. vesca]
Length = 1087
Score = 58.9 bits (141), Expect(2) = 6e-14
Identities = 28/61 (45%), Positives = 39/61 (63%), Gaps = 2/61 (3%)
Frame = -1
Query: 463 HLRVVGCRCYYYI--HIRTKFEAKAHEGVFLGYARGSKAYHIYDPVSCTKLTTHDVTFDE 290
HL+V G CY Y TKF+AK +GVFLGYA S+AY +Y+ +SC + T +V D+
Sbjct: 971 HLKVFGSPCYIYKDREYLTKFDAKCDKGVFLGYALNSRAYRVYNKISCKIMETINVAIDD 1030
Query: 289 N 287
+
Sbjct: 1031 S 1031
Score = 44.7 bits (104), Expect(2) = 6e-14
Identities = 21/52 (40%), Positives = 29/52 (55%)
Frame = -2
Query: 636 NRRLVEMMRVMLIEAGMTPGWWGEALETASYLINYIPTKALNFRNPLNVWLG 481
NR LVEM RVML A + +W EA+ A Y +N + + F+ P +W G
Sbjct: 913 NRALVEMGRVMLNSAELAHSFWAEAVNNACYTLNRVIFRPGTFKTPYELWKG 964
>gb|ABR16307.1| unknown [Picea sitchensis]
Length = 407
Score = 53.1 bits (126), Expect(2) = 6e-14
Identities = 27/68 (39%), Positives = 37/68 (54%), Gaps = 2/68 (2%)
Frame = -1
Query: 463 HLRVVGCRCYYYI--HIRTKFEAKAHEGVFLGYARGSKAYHIYDPVSCTKLTTHDVTFDE 290
H +V GC Y +I R K + K+H+ + +GY+ SKAY +YDP L DV FDE
Sbjct: 300 HFKVFGCDVYVHIPDEKRKKLDRKSHKCIMVGYSETSKAYRVYDPEKNEILIRRDVIFDE 359
Query: 289 NDFGKSKS 266
+KS
Sbjct: 360 RCIPSTKS 367
Score = 50.4 bits (119), Expect(2) = 6e-14
Identities = 22/50 (44%), Positives = 30/50 (60%)
Frame = -2
Query: 636 NRRLVEMMRVMLIEAGMTPGWWGEALETASYLINYIPTKALNFRNPLNVW 487
NR L+EM R ML M P +W EA+ TA+Y++N PT A+ + P W
Sbjct: 242 NRTLMEMARCMLHARNMDPKFWAEAINTATYIVNRTPTIAVKHKTPEEAW 291
>emb|CAN75051.1| hypothetical protein VITISV_020117 [Vitis vinifera]
Length = 1625
Score = 53.1 bits (126), Expect(2) = 9e-14
Identities = 40/154 (25%), Positives = 69/154 (44%), Gaps = 17/154 (11%)
Frame = -1
Query: 457 RVVGCRCYYYIHI--RTKFEAKAHEGVFLGYARGSKAYHIYDPVSCTKLTTHDVTFDEND 284
R+ GC + ++H RTK + A +FLGY K Y YDP++ T DVTF E++
Sbjct: 692 RIFGCVAFVHLHKNQRTKLDPCAVRCLFLGYGVXKKGYRCYDPIAKRTYITMDVTFLESE 751
Query: 283 F---------------GKSKSRGEIELTDIQENE*HFPVRVNEWSDLYTEIDPVESIIAD 149
F G+ ++ ++E+ ++ +N P N+ +DL E DPV +
Sbjct: 752 FFFSPISNSPLQGEIYGEERNWSDVEVLEVGDN----PTHPNDDNDL-VEHDPVPEPL-- 804
Query: 148 NSAEGDATIVHDEDVIEELLSWVNVPHEQANRDV 47
E + ED ++ VP++ ++
Sbjct: 805 -RTEAEPVPESSEDAESDVFPHSLVPNDPPTENI 837
Score = 49.7 bits (117), Expect(2) = 9e-14
Identities = 22/49 (44%), Positives = 32/49 (65%)
Frame = -2
Query: 636 NRRLVEMMRVMLIEAGMTPGWWGEALETASYLINYIPTKALNFRNPLNV 490
NR ++E R +LI A + +W +A+ TA YL+N +PTK L F+ PL V
Sbjct: 628 NRHILETARALLINAHVPNRYWSDAVTTAVYLLNRMPTKVLQFQTPLKV 676
>gb|ACL97384.1| Gag-Pol polyprotein [Medicago truncatula]
Length = 1305
Score = 54.3 bits (129), Expect(2) = 9e-14
Identities = 23/56 (41%), Positives = 36/56 (64%)
Frame = -2
Query: 636 NRRLVEMMRVMLIEAGMTPGWWGEALETASYLINYIPTKALNFRNPLNVWLGTDLE 469
NR L+E R ML AGM +W EA++TA Y+IN P+ A++ + P+ +W G ++
Sbjct: 589 NRTLLERTRAMLKTAGMAKSFWAEAVKTACYVINRSPSTAIDLKTPMEMWKGKPVD 644
Score = 48.5 bits (114), Expect(2) = 9e-14
Identities = 26/70 (37%), Positives = 39/70 (55%), Gaps = 2/70 (2%)
Frame = -1
Query: 460 LRVVGCRCY--YYIHIRTKFEAKAHEGVFLGYARGSKAYHIYDPVSCTKLTTHDVTFDEN 287
L V GC Y Y RTK + K+ + +FLGYA K Y ++DP + + + DV F EN
Sbjct: 648 LHVFGCPVYVMYNSQERTKLDPKSRKCIFLGYADNVKGYRLWDPTARKVVVSRDVVFAEN 707
Query: 286 DFGKSKSRGE 257
+ +SK + +
Sbjct: 708 EL-QSKQKND 716
>gb|AAG60200.1|AC084763_20 putative gag-pol polyprotein [Oryza sativa Japonica Group]
Length = 1611
Score = 52.4 bits (124), Expect(2) = 1e-13
Identities = 24/52 (46%), Positives = 34/52 (65%)
Frame = -2
Query: 636 NRRLVEMMRVMLIEAGMTPGWWGEALETASYLINYIPTKALNFRNPLNVWLG 481
N+ +V M R +L + GM +WGEA+ TA+Y++N PTKAL+ R P W G
Sbjct: 820 NQTVVGMARALLKQRGMPAIFWGEAVVTAAYILNRSPTKALDGRTPYEAWHG 871
Score = 50.1 bits (118), Expect(2) = 1e-13
Identities = 29/60 (48%), Positives = 35/60 (58%), Gaps = 2/60 (3%)
Frame = -1
Query: 463 HLRVVGCRCYYYI--HIRTKFEAKAHEGVFLGYARGSKAYHIYDPVSCTKLTTHDVTFDE 290
HLRV GC + HI K + ++ GVF+GYA GSKAY I DP + T DV FDE
Sbjct: 878 HLRVFGCLAFAKELGHIG-KLDDRSTPGVFIGYAEGSKAYRILDPETQRVRITRDVVFDE 936
>emb|CAE03128.3| OJ000114_01.9 [Oryza sativa Japonica Group]
Length = 1601
Score = 52.4 bits (124), Expect(2) = 1e-13
Identities = 24/52 (46%), Positives = 34/52 (65%)
Frame = -2
Query: 636 NRRLVEMMRVMLIEAGMTPGWWGEALETASYLINYIPTKALNFRNPLNVWLG 481
N+ +V M R +L + GM +WGEA+ TA+Y++N PTKAL+ R P W G
Sbjct: 810 NQTVVGMARALLKQRGMPAIFWGEAVVTAAYILNRSPTKALDGRTPYEAWHG 861
Score = 50.1 bits (118), Expect(2) = 1e-13
Identities = 29/60 (48%), Positives = 35/60 (58%), Gaps = 2/60 (3%)
Frame = -1
Query: 463 HLRVVGCRCYYYI--HIRTKFEAKAHEGVFLGYARGSKAYHIYDPVSCTKLTTHDVTFDE 290
HLRV GC + HI K + ++ GVF+GYA GSKAY I DP + T DV FDE
Sbjct: 868 HLRVFGCLAFAKELGHIG-KLDDRSTPGVFIGYAEGSKAYRILDPETQRVRITRDVVFDE 926
>gb|AAN05503.1| Putative gag-pol polyprotein [Oryza sativa Japonica Group]
Length = 1586
Score = 52.4 bits (124), Expect(2) = 1e-13
Identities = 24/52 (46%), Positives = 34/52 (65%)
Frame = -2
Query: 636 NRRLVEMMRVMLIEAGMTPGWWGEALETASYLINYIPTKALNFRNPLNVWLG 481
N+ +V M R +L + GM +WGEA+ TA+Y++N PTKAL+ R P W G
Sbjct: 810 NQTVVGMARALLKQRGMPAIFWGEAVVTAAYILNRSPTKALDGRTPYEAWHG 861
Score = 50.1 bits (118), Expect(2) = 1e-13
Identities = 29/60 (48%), Positives = 35/60 (58%), Gaps = 2/60 (3%)
Frame = -1
Query: 463 HLRVVGCRCYYYI--HIRTKFEAKAHEGVFLGYARGSKAYHIYDPVSCTKLTTHDVTFDE 290
HLRV GC + HI K + ++ GVF+GYA GSKAY I DP + T DV FDE
Sbjct: 868 HLRVFGCLAFAKELGHIG-KLDDRSTPGVFIGYAEGSKAYRILDPETQRVRITRDVVFDE 926
>ref|NP_001175469.1| Os08g0248500 [Oryza sativa Japonica Group]
gi|255678284|dbj|BAH94197.1| Os08g0248500 [Oryza sativa
Japonica Group]
Length = 1487
Score = 52.4 bits (124), Expect(2) = 1e-13
Identities = 24/52 (46%), Positives = 34/52 (65%)
Frame = -2
Query: 636 NRRLVEMMRVMLIEAGMTPGWWGEALETASYLINYIPTKALNFRNPLNVWLG 481
N+ +V M R +L + GM +WGEA+ TA+Y++N PTKAL+ R P W G
Sbjct: 711 NQTVVGMARALLKQRGMPAIFWGEAVVTAAYILNRSPTKALDGRTPYEAWHG 762
Score = 50.1 bits (118), Expect(2) = 1e-13
Identities = 29/60 (48%), Positives = 35/60 (58%), Gaps = 2/60 (3%)
Frame = -1
Query: 463 HLRVVGCRCYYYI--HIRTKFEAKAHEGVFLGYARGSKAYHIYDPVSCTKLTTHDVTFDE 290
HLRV GC + HI K + ++ GVF+GYA GSKAY I DP + T DV FDE
Sbjct: 769 HLRVFGCLAFAKELGHIG-KLDDRSTPGVFIGYAEGSKAYRILDPETQRVRITRDVVFDE 827
>gb|ACI62137.1| polyprotein [Drosophila melanogaster]
Length = 1319
Score = 52.8 bits (125), Expect(2) = 2e-13
Identities = 39/139 (28%), Positives = 61/139 (43%), Gaps = 15/139 (10%)
Frame = -1
Query: 463 HLRVVGCRCYYYIHIR-TKFEAKAHEGVFLGYARGSKAYHIYDPVSCTKLTTHDVTFDEN 287
HLRV G R + R +KF+AK E +F+GY+ +KAY +YD + DV F E
Sbjct: 629 HLRVFGSRAFALDKTRKSKFQAKGKEYIFVGYSSTAKAYRLYDREKRIIVARRDVKFVEG 688
Query: 286 DFGKSKSRGEIELTDIQENE*H--------------FPVRVNEWSDLYTEIDPVESIIAD 149
+F K + D N H P+ V + S+ Y D E
Sbjct: 689 EFESKKCTISEQNNDFATNIIHLESNIQVPEQQRPAMPMVVEQSSNSYDSCDSGEEEEEF 748
Query: 148 NSAEGDATIVHDEDVIEEL 92
SA + I+ +E+++ ++
Sbjct: 749 VSASDEKQILTEEEIVPDV 767
Score = 49.3 bits (116), Expect(2) = 2e-13
Identities = 24/50 (48%), Positives = 30/50 (60%)
Frame = -2
Query: 636 NRRLVEMMRVMLIEAGMTPGWWGEALETASYLINYIPTKALNFRNPLNVW 487
NR +VEM + MLI A + W EA+ TASYL N P+KAL P +W
Sbjct: 571 NRTIVEMAKSMLIHAKLEEFLWAEAVSTASYLRNRCPSKALMGATPFEIW 620
>gb|ACL97383.1| Gag-Pol polyprotein [Medicago truncatula]
Length = 1305
Score = 54.3 bits (129), Expect(2) = 2e-13
Identities = 23/56 (41%), Positives = 36/56 (64%)
Frame = -2
Query: 636 NRRLVEMMRVMLIEAGMTPGWWGEALETASYLINYIPTKALNFRNPLNVWLGTDLE 469
NR L+E R ML AGM +W EA++TA Y+IN P+ A++ + P+ +W G ++
Sbjct: 589 NRTLLERTRAMLKTAGMAKSFWAEAVKTACYVINRSPSTAIDLKTPMEMWKGKPVD 644
Score = 47.8 bits (112), Expect(2) = 2e-13
Identities = 24/61 (39%), Positives = 34/61 (55%), Gaps = 2/61 (3%)
Frame = -1
Query: 460 LRVVGCRCY--YYIHIRTKFEAKAHEGVFLGYARGSKAYHIYDPVSCTKLTTHDVTFDEN 287
L V GC Y Y RTK + K+ + +FLGYA K Y ++DP + + + DV F EN
Sbjct: 648 LHVFGCPVYVMYNSQERTKLDPKSRKCIFLGYADNVKGYRLWDPTARKVVVSRDVVFAEN 707
Query: 286 D 284
+
Sbjct: 708 E 708
>gb|ACL97387.1| Gag-Pol polyprotein [Lotus japonicus]
Length = 1305
Score = 51.6 bits (122), Expect(2) = 2e-13
Identities = 22/52 (42%), Positives = 32/52 (61%)
Frame = -2
Query: 636 NRRLVEMMRVMLIEAGMTPGWWGEALETASYLINYIPTKALNFRNPLNVWLG 481
NR L+E R ML AG+ +W EA +TA Y+IN P+ A+ + P+ +W G
Sbjct: 589 NRTLLERTRAMLKTAGLAKSFWAEAAKTACYVINRSPSTAIGLKTPMEMWKG 640
Score = 50.4 bits (119), Expect(2) = 2e-13
Identities = 54/169 (31%), Positives = 71/169 (42%), Gaps = 19/169 (11%)
Frame = -1
Query: 460 LRVVGCRCY--YYIHIRTKFEAKAHEGVFLGYARGSKAYHIYDPVSCTKLTTHDVTFDEN 287
LRV GC Y Y RTK + K+ FLGYA K Y ++DP + + DV F EN
Sbjct: 648 LRVFGCPVYVMYNSQERTKLDPKSRRCTFLGYADNVKGYRLWDPTARKIFVSRDVIFVEN 707
Query: 286 DFGK-SKSRGEIELTDIQENE*HFPVRVNEWSDLYTEIDPVESIIADNSAEGDATI---- 122
+ K K+ G + T E E +E + E +P E N AE T
Sbjct: 708 ELQKEQKNDGTTKETATVEIEEKSGEENSEAEPEHEEQEPNEV----NDAEPRRTTRQIR 763
Query: 121 ---VHDEDVIEE-----LLSWVNVP---HEQAN-RDVSLWVRKQREMLK 11
H E V+ LLS P HE N D SLW+ +E ++
Sbjct: 764 KPSWHSEYVMASHDAYCLLSEDGEPSTFHEAVNGSDASLWMAAMQEEIE 812
>gb|EEE52905.1| hypothetical protein OsJ_35506 [Oryza sativa Japonica Group]
Length = 832
Score = 52.4 bits (124), Expect(2) = 2e-13
Identities = 24/52 (46%), Positives = 34/52 (65%)
Frame = -2
Query: 636 NRRLVEMMRVMLIEAGMTPGWWGEALETASYLINYIPTKALNFRNPLNVWLG 481
N+ +V M R +L + GM +WGEA+ TA+Y++N PTKAL+ R P W G
Sbjct: 148 NQTVVGMARALLKQRGMPAIFWGEAVVTAAYILNRSPTKALDGRTPYEAWHG 199
Score = 49.7 bits (117), Expect(2) = 2e-13
Identities = 29/60 (48%), Positives = 35/60 (58%), Gaps = 2/60 (3%)
Frame = -1
Query: 463 HLRVVGCRCYYYI--HIRTKFEAKAHEGVFLGYARGSKAYHIYDPVSCTKLTTHDVTFDE 290
HLRV GC + HI K + ++ GVF+GYA GSKAY I DP + T DV FDE
Sbjct: 206 HLRVFGCLAFAKELGHIG-KLDDRSTPGVFIGYAEGSKAYRILDPETQRVRTAGDVVFDE 264
>gb|AAL79695.1|AC087599_14 putative gag-pol polyprotein [Oryza sativa Japonica Group]
gi|31433560|gb|AAP55058.1| retrotransposon protein,
putative, Ty1-copia subclass [Oryza sativa Japonica
Group]
Length = 1168
Score = 51.2 bits (121), Expect(2) = 2e-13
Identities = 23/52 (44%), Positives = 34/52 (65%)
Frame = -2
Query: 636 NRRLVEMMRVMLIEAGMTPGWWGEALETASYLINYIPTKALNFRNPLNVWLG 481
N+ +V M R +L + GM +WG+A+ TA+Y++N PTKAL+ R P W G
Sbjct: 474 NQTVVGMARALLKQRGMPAIFWGQAVVTAAYILNRSPTKALDGRTPYEAWHG 525
Score = 50.4 bits (119), Expect(2) = 2e-13
Identities = 29/60 (48%), Positives = 35/60 (58%), Gaps = 2/60 (3%)
Frame = -1
Query: 463 HLRVVGCRCYYYI--HIRTKFEAKAHEGVFLGYARGSKAYHIYDPVSCTKLTTHDVTFDE 290
HLRV GC + HI K + ++ GVF+GYA GSKAY I DP + T DV FDE
Sbjct: 532 HLRVFGCLAFAKELGHIG-KLDDRSTPGVFIGYAEGSKAYRILDPETQRVRTARDVVFDE 590
>ref|XP_005710287.1| unnamed protein product [Chondrus crispus]
gi|507106340|emb|CDF39993.1| unnamed protein product
[Chondrus crispus]
Length = 678
Score = 62.0 bits (149), Expect(2) = 2e-13
Identities = 42/119 (35%), Positives = 61/119 (51%), Gaps = 2/119 (1%)
Frame = -1
Query: 463 HLRVVGCRCYYYI--HIRTKFEAKAHEGVFLGYARGSKAYHIYDPVSCTKLTTHDVTFDE 290
HLRV G +C+Y + H K +A+A E +FLGYA +KAY ++D + + DVTFDE
Sbjct: 571 HLRVFGSKCWYTLPKHNIQKLDARAKEAMFLGYAENTKAYKLWDGDLHKVIVSRDVTFDE 630
Query: 289 NDFGKSKSRGEIELTDIQENE*HFPVRVNEWSDLYTEIDPVESIIADNSAEGDATIVHD 113
+ GKS GE P+ NE + T+ D + I + AE DA + +
Sbjct: 631 STGGKS---GE-------------PMDTNE--EASTDDDTINLNIDEEVAENDAVAIEN 671
Score = 39.7 bits (91), Expect(2) = 2e-13
Identities = 19/52 (36%), Positives = 32/52 (61%), Gaps = 1/52 (1%)
Frame = -2
Query: 636 NRRLVEMMRVMLIEAGMTPGWWGEALETASYLINYIPTKALNFR-NPLNVWL 484
NR LV ++R ML +T G+W EAL A Y+ N + ++A+ + P ++W+
Sbjct: 512 NRTLVNLVRSMLAHKKVTKGFWAEALANAVYVRNRVTSRAIPPKMTPYHLWM 563
>gb|ABA96719.2| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 1795
Score = 50.8 bits (120), Expect(2) = 3e-13
Identities = 23/52 (44%), Positives = 33/52 (63%)
Frame = -2
Query: 636 NRRLVEMMRVMLIEAGMTPGWWGEALETASYLINYIPTKALNFRNPLNVWLG 481
N+ +V M R +L + GM +WGE + TA+Y++N PTKAL+ R P W G
Sbjct: 1004 NQTVVGMARALLKQRGMPAIFWGEVVVTAAYILNRSPTKALDGRTPYEAWHG 1055
Score = 50.4 bits (119), Expect(2) = 3e-13
Identities = 29/60 (48%), Positives = 35/60 (58%), Gaps = 2/60 (3%)
Frame = -1
Query: 463 HLRVVGCRCYYYI--HIRTKFEAKAHEGVFLGYARGSKAYHIYDPVSCTKLTTHDVTFDE 290
HLRV GC + HI K + ++ GVF+GYA GSKAY I DP + T DV FDE
Sbjct: 1062 HLRVFGCLAFAKELGHIG-KLDDRSTPGVFIGYAEGSKAYRILDPETQRVRTARDVVFDE 1120