BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ephedra25_contig00020510
         (1233 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_001931961.1| replicase [Lamium leaf distortion virus] gi|...   122   2e-25
ref|NP_659397.1| hypothetical protein [Mirabilis mosaic virus] g...   119   3e-24
emb|CCG14716.1| ORF V protein [Strawberry vein banding virus]         118   4e-24
ref|XP_002304262.1| predicted protein [Populus trichocarpa]           118   4e-24
ref|XP_002335588.1| predicted protein [Populus trichocarpa]           118   4e-24
gb|AGT42175.1| reverse transcriptase [Cauliflower mosaic virus]       117   1e-23
gb|AEB54984.1| polyprotein [Dahlia mosaic virus D10]                  117   1e-23
ref|XP_002335127.1| predicted protein [Populus trichocarpa]           117   1e-23
ref|NP_619548.1| Enzymatic polyprotein [Contains: Aspartic prote...   117   1e-23
ref|YP_006607892.1| reverse transcriptase [Soybean Putnam virus]...   116   2e-23
gb|AAD37341.1|AF140604_5 reverse transcriptase [Cauliflower mosa...   116   2e-23
sp|Q00962.1|POL_CAMVN RecName: Full=Enzymatic polyprotein; Inclu...   116   2e-23
sp|Q02964.1|POL_CAMVE RecName: Full=Enzymatic polyprotein; Inclu...   115   3e-23
sp|P03556.1|POL_CAMVD RecName: Full=Enzymatic polyprotein; Inclu...   115   3e-23
gb|AGT42147.1| reverse transcriptase [Cauliflower mosaic virus] ...   115   3e-23
gb|AGT42140.1| reverse transcriptase [Cauliflower mosaic virus]       115   3e-23
gb|AGT42112.1| reverse transcriptase [Cauliflower mosaic virus]       115   3e-23
gb|AGT42098.1| reverse transcriptase [Cauliflower mosaic virus] ...   115   3e-23
gb|AGT42091.1| reverse transcriptase [Cauliflower mosaic virus]       115   3e-23
gb|AGT42070.1| reverse transcriptase [Cauliflower mosaic virus] ...   115   3e-23

>ref|YP_001931961.1| replicase [Lamium leaf distortion virus] gi|172041757|gb|ACB69767.1|
            replicase [Lamium leaf distortion virus]
          Length = 696

 Score =  122 bits (307), Expect = 2e-25
 Identities = 71/209 (33%), Positives = 101/209 (48%), Gaps = 2/209 (0%)
 Frame = -2

Query: 692  QEHVIKKINDFLDKLADKLQCQMFLGFLNYVHQYIPNLSKETREIWTTMTS-APYQWTSK 516
            Q H+++ I+ F +K+ DK Q Q FLG L Y   YIP L+     +   +    P+ W   
Sbjct: 478  QNHILEHIHKFPNKIEDKKQLQRFLGILTYASDYIPQLASMRAPLQEKLKEDVPWNWKHS 537

Query: 515  ASTQVNKLKEICQHIPALES-IFGGPFILAIDASEHEWAVVLLKKEDKEENICMYASGAF 339
             +  V ++K+     P L         I+  DAS   W  +L      EE IC Y SG+F
Sbjct: 538  DTEYVEEIKKSLTDFPKLHHPATDEKLIIECDASGKYWGGILKAIHQSEERICRYTSGSF 597

Query: 338  KPNELKY*LADKEILAALKGVEKFHSFFINEDFTLRTDSSGLATLMKKPIKSSPKLKRFT 159
            K  EL Y   +KEILA ++ + KF  +    +F +RTD+      M   +K   K  R  
Sbjct: 598  KKAELNYHSNEKEILAVIRVIAKFTIYLTPLEFLIRTDNKNFTFFMNTNVKGDYKQGRLV 657

Query: 158  *WK*LLSQYEFKVHQIPGIQNALLDALTR 72
             W+  LS+Y FKV  I G++N   D LTR
Sbjct: 658  RWQQWLSRYSFKVEHITGVKNIFADFLTR 686


>ref|NP_659397.1| hypothetical protein [Mirabilis mosaic virus]
            gi|21427196|gb|AAM53128.1| ORFV [Mirabilis mosaic virus]
          Length = 674

 Score =  119 bits (297), Expect = 3e-24
 Identities = 77/211 (36%), Positives = 107/211 (50%), Gaps = 4/211 (1%)
 Frame = -2

Query: 692  QEHVIKKINDFLDKLADKLQCQMFLGFLNYVHQYIPNLSKETREIWTTMTSAP-YQWTSK 516
            Q H++  I+ F D++ DK Q Q FLG L Y   YIP L+++ + +   +     + WT  
Sbjct: 453  QNHILDHIHTFPDRIEDKKQLQRFLGVLTYADSYIPKLAEKRKPLQVKLKKDQVWIWTQS 512

Query: 515  ASTQVNKLKEICQHIPALE-SIFGGPFILAIDASEHEWAVVL-LKKEDKEENICMYASGA 342
             +  V K+K+   + P L         I+  DAS+H W  VL  +  + EE IC Y+SG 
Sbjct: 513  DTDYVKKIKKGLINFPKLYLPKKEDSLIIETDASDHFWGGVLKAQTTEGEELICRYSSGT 572

Query: 341  FKPNELKY*LADKEILAALKGVEKFHSFFINEDFTLRTDSSGLAT-LMKKPIKSSPKLKR 165
            FKP EL Y   +KE+LA  + + KF  +     FT+RTD+  L    M K I    K  R
Sbjct: 573  FKPAELNYHSNEKELLAVKQVITKFSIYLTPVCFTVRTDNVNLLKGFMNKKITGDSKQGR 632

Query: 164  FT*WK*LLSQYEFKVHQIPGIQNALLDALTR 72
               W+   S Y FKV  + G QN L D LTR
Sbjct: 633  LIRWQMWFSHYTFKVDHLKGEQNVLADYLTR 663


>emb|CCG14716.1| ORF V protein [Strawberry vein banding virus]
          Length = 699

 Score =  118 bits (296), Expect = 4e-24
 Identities = 70/212 (33%), Positives = 109/212 (51%), Gaps = 4/212 (1%)
 Frame = -2

Query: 695  MQEHVIKKINDFLDKLADKLQCQMFLGFLNYVHQYIPNLSKETREIWTTMTSA-PYQWTS 519
            +Q H+   +  F D+LAD+   Q FLG LNY+  Y P ++     +   +     + WT 
Sbjct: 483  VQSHIGLHLTAFPDQLADRNALQRFLGLLNYISAYFPKIANLRSPLQVKLKKEITWSWTE 542

Query: 518  KASTQVNKLKEICQHIPAL--ESIFGGPFILAIDASEHEWAVVLLKK-EDKEENICMYAS 348
            K +  V K+K + + +P L   S    P I+  DAS+  W  VL  K  + +E IC YAS
Sbjct: 543  KDTETVRKIKSLVKSLPDLYNPSPEDKP-IIECDASDDHWGAVLKAKLPEGKEVICRYAS 601

Query: 347  GAFKPNELKY*LADKEILAALKGVEKFHSFFINEDFTLRTDSSGLATLMKKPIKSSPKLK 168
            G FKP E  Y   +KEIL+ +K ++ F ++ +   F +RTD++  A  ++  I    K  
Sbjct: 602  GTFKPAEKNYHSNEKEILSIIKAIKAFRAYILPYKFLVRTDNTNAAYFVRTNIAGDYKQS 661

Query: 167  RFT*WK*LLSQYEFKVHQIPGIQNALLDALTR 72
            R   W+  L +Y F +  + G +N L D +TR
Sbjct: 662  RLVRWQMALREYSFDIEHVSGQKNVLADIMTR 693


>ref|XP_002304262.1| predicted protein [Populus trichocarpa]
          Length = 455

 Score =  118 bits (296), Expect = 4e-24
 Identities = 67/211 (31%), Positives = 111/211 (52%), Gaps = 3/211 (1%)
 Frame = -2

Query: 695 MQEHVIKKINDFLDKLADKLQCQMFLGFLNYVHQYIPNLSKETREIWTTMTS-APYQWTS 519
           +QEH+ + ++ F  K+ADK Q Q FLG LNY+  + P +++  + +   +   + +QW+ 
Sbjct: 235 LQEHIGEHLSAFNSKIADKKQLQRFLGILNYISHFCPKVAQIRQPLQAKLKKDSIWQWSK 294

Query: 518 KASTQVNKLKEICQHIPALESIFGG-PFILAIDASEHEWAVVL-LKKEDKEENICMYASG 345
           + +  + K+K+  +H+P +       P I+  DAS+  W  +L  + E+  E IC YASG
Sbjct: 295 EDTDYIEKIKKAVKHLPPVHHPGPKEPLIIETDASDKYWGGILKAQPEEGPELICGYASG 354

Query: 344 AFKPNELKY*LADKEILAALKGVEKFHSFFINEDFTLRTDSSGLATLMKKPIKSSPKLKR 165
            FKP E  Y   +KE+LA +  +++F  + I   F  RTD+  +   +   I  S K  R
Sbjct: 355 TFKPAEQNYHSNEKELLALINTIKRFQVYLIPVQFVARTDNKNVFFFLNTNIHGSYKQGR 414

Query: 164 FT*WK*LLSQYEFKVHQIPGIQNALLDALTR 72
              W+  LS Y+     + GI N   D L+R
Sbjct: 415 LVRWQLWLSYYDIVFEHVEGINNIFADTLSR 445


>ref|XP_002335588.1| predicted protein [Populus trichocarpa]
          Length = 622

 Score =  118 bits (296), Expect = 4e-24
 Identities = 70/211 (33%), Positives = 111/211 (52%), Gaps = 3/211 (1%)
 Frame = -2

Query: 695  MQEHVIKKINDFLDKLADKLQCQMFLGFLNYVHQYIPNLSKETREIWTTMTS-APYQWTS 519
            +Q+H+ + I  F  K+ DK Q Q FLG LNY+ Q+ P +++  + +   +   A +QW+ 
Sbjct: 408  LQKHIGENITAFNSKITDKKQLQRFLGILNYISQFCPKVAQIRQPLQAKLKKDAFWQWSD 467

Query: 518  KASTQVNKLKEICQHIPALESIFGG-PFILAIDASEHEWAVVLLKKE-DKEENICMYASG 345
              +  V+K+K+  +++P +       P I+  DAS++ W  +L  K+ D  E IC YASG
Sbjct: 468  SDTAYVDKIKKAIKNLPPVHHPGPDEPLIIETDASDNYWGGILKSKQSDGLELICGYASG 527

Query: 344  AFKPNELKY*LADKEILAALKGVEKFHSFFINEDFTLRTDSSGLATLMKKPIKSSPKLKR 165
             FKP E  Y   +KEILA +  +++F  F I   FT RTD+  +   +   I  S K  R
Sbjct: 528  TFKPAEKNYHSNEKEILALINTIKRFQVFLIPVQFTARTDNKNVFYFLHTNIHGSYKQGR 587

Query: 164  FT*WK*LLSQYEFKVHQIPGIQNALLDALTR 72
               W+  LS ++     + G  N   D L+R
Sbjct: 588  LVRWQLWLSYFDIIFEHVAGTNNVFADFLSR 618


>gb|AGT42175.1| reverse transcriptase [Cauliflower mosaic virus]
          Length = 675

 Score =  117 bits (293), Expect = 1e-23
 Identities = 72/213 (33%), Positives = 107/213 (50%), Gaps = 6/213 (2%)
 Frame = -2

Query: 692  QEHVIKKINDFLDKLADKLQCQMFLGFLNYVHQYIPNLSKETREIWTTMT-SAPYQWTSK 516
            Q H+++ IN F D L DK Q Q FLG L Y   YIP L++  + +   +  + P++WT +
Sbjct: 456  QGHILEHINKFPDTLEDKKQLQRFLGILTYASDYIPKLAQIRKPLQAKLKENVPWKWTKE 515

Query: 515  ASTQVNKLKEICQHIPALES-IFGGPFILAIDASEHEWAVVL----LKKEDKEENICMYA 351
             +  + K+K+  Q  P L   +     I+  DAS+  W  +L    + ++   E IC YA
Sbjct: 516  DTLYMQKVKKNLQGFPPLHHPLPEEKLIIETDASDDYWGGMLKAIKINEDTNTELICRYA 575

Query: 350  SGAFKPNELKY*LADKEILAALKGVEKFHSFFINEDFTLRTDSSGLATLMKKPIKSSPKL 171
            SG+FK  E  Y   DKE LA +  ++KF  +     F +RTD++   + +    K   KL
Sbjct: 576  SGSFKAAEKNYHSNDKETLAVINTIKKFSIYLTPVHFLIRTDNTHFKSFVNLNYKGDSKL 635

Query: 170  KRFT*WK*LLSQYEFKVHQIPGIQNALLDALTR 72
             R   W+  LS Y F V  I G  N   D L+R
Sbjct: 636  GRNIRWQAWLSHYSFDVEHIKGTDNHFADFLSR 668


>gb|AEB54984.1| polyprotein [Dahlia mosaic virus D10]
          Length = 810

 Score =  117 bits (293), Expect = 1e-23
 Identities = 67/209 (32%), Positives = 101/209 (48%), Gaps = 2/209 (0%)
 Frame = -2

Query: 692  QEHVIKKINDFLDKLADKLQCQMFLGFLNYVHQYIPNLSKETREIWTTMTSA-PYQWTSK 516
            Q+H+++ ++ F D L DK   Q FLG L Y   YIP L++  R +   +     ++W   
Sbjct: 598  QKHILENLHKFPDTLEDKKHLQRFLGILTYAESYIPKLAELRRPLQVKLKKDYVWEWKQS 657

Query: 515  ASTQVNKLKEICQHIPALESIFGGPF-ILAIDASEHEWAVVLLKKEDKEENICMYASGAF 339
             ++ + K+K+     P L       F I+  DAS   W  VL  K  ++E +C Y SG+F
Sbjct: 658  DTSYIKKIKKNLTSFPKLYLPKEKEFLIIETDASNDYWGGVLKAKTAEKEEVCRYTSGSF 717

Query: 338  KPNELKY*LADKEILAALKGVEKFHSFFINEDFTLRTDSSGLATLMKKPIKSSPKLKRFT 159
            K  E  Y   +KE+LA    + KF  +     F +RTDS      +K  I    K  R  
Sbjct: 718  KTAEKNYHSNEKELLAVKNAISKFSIYLTPVKFLVRTDSKNFTYFLKTKISGDNKQGRLV 777

Query: 158  *WK*LLSQYEFKVHQIPGIQNALLDALTR 72
             W+   S+Y F +  + G++N L D LTR
Sbjct: 778  RWQMWFSRYTFDIEHLEGLKNVLADCLTR 806


>ref|XP_002335127.1| predicted protein [Populus trichocarpa]
          Length = 909

 Score =  117 bits (293), Expect = 1e-23
 Identities = 69/211 (32%), Positives = 111/211 (52%), Gaps = 3/211 (1%)
 Frame = -2

Query: 695  MQEHVIKKINDFLDKLADKLQCQMFLGFLNYVHQYIPNLSKETREIWTTMTS-APYQWTS 519
            +Q+H+ + I  F  K+ D+ Q Q FLG LNY+ Q+ P +++  + +   +   A +QW+ 
Sbjct: 695  LQKHIGENITAFNSKITDRKQLQRFLGILNYISQFCPKVAQIRQPLQAKLKKDAFWQWSD 754

Query: 518  KASTQVNKLKEICQHIPALESIFGG-PFILAIDASEHEWAVVLLKKE-DKEENICMYASG 345
              +  V+K+K+  +++P +       P I+  DAS++ W  +L  K+ D  E IC YASG
Sbjct: 755  SDTAYVDKIKKAIKNLPPVHHPGPDEPLIIETDASDNYWGGILKSKQSDGLELICGYASG 814

Query: 344  AFKPNELKY*LADKEILAALKGVEKFHSFFINEDFTLRTDSSGLATLMKKPIKSSPKLKR 165
             FKP E  Y   +KEILA +  +++F  F I   FT RTD+  +   +   I  S K  R
Sbjct: 815  TFKPAEKNYHSNEKEILALINTIKRFQVFLIPVQFTARTDNKNVFYFLHTNIHGSYKQGR 874

Query: 164  FT*WK*LLSQYEFKVHQIPGIQNALLDALTR 72
               W+  LS ++     + G  N   D L+R
Sbjct: 875  LVRWQLWLSYFDIIFEHVAGTNNVFADFLSR 905


>ref|NP_619548.1| Enzymatic polyprotein [Contains: Aspartic protease; Endonuclease;
            Reverse transcriptase] [Figwort mosaic virus]
            gi|130600|sp|P09523.1|POL_FMVD RecName: Full=Enzymatic
            polyprotein; Includes: RecName: Full=Aspartic protease;
            Includes: RecName: Full=Endonuclease; Includes: RecName:
            Full=Reverse transcriptase gi|58813|emb|CAA29527.1|
            unnamed protein product [Figwort mosaic virus]
          Length = 666

 Score =  117 bits (292), Expect = 1e-23
 Identities = 72/212 (33%), Positives = 106/212 (50%), Gaps = 5/212 (2%)
 Frame = -2

Query: 692  QEHVIKKINDFLDKLADKLQCQMFLGFLNYVHQYIPNLSKETREIWTTMTS-APYQWTSK 516
            Q H+++ I+ F D+L DK   Q FLG L Y   YIP L++  + +   +     + WT  
Sbjct: 453  QNHILENIHKFPDRLEDKKHLQRFLGVLTYAETYIPKLAEIRKPLQVKLKKDVTWNWTQS 512

Query: 515  ASTQVNKLKEICQHIPALESIFGGP---FILAIDASEHEWAVVLLKKE-DKEENICMYAS 348
             S  V K+K+     P L      P    I+  DAS+  W  VL  +  D  E IC Y+S
Sbjct: 513  DSDYVKKIKKNLGSFPKL--YLPKPEDHLIIETDASDSFWGGVLKARALDGVELICRYSS 570

Query: 347  GAFKPNELKY*LADKEILAALKGVEKFHSFFINEDFTLRTDSSGLATLMKKPIKSSPKLK 168
            G+FK  E  Y   DKE+LA  + + KF ++     FT+RTD+      ++  +K   K  
Sbjct: 571  GSFKQAEKNYHSNDKELLAVKQVITKFSAYLTPVRFTVRTDNKNFTYFLRINLKGDSKQG 630

Query: 167  RFT*WK*LLSQYEFKVHQIPGIQNALLDALTR 72
            R   W+   S+Y+F V  + G++N L D LTR
Sbjct: 631  RLVRWQNWFSKYQFDVEHLEGVKNVLADCLTR 662


>ref|YP_006607892.1| reverse transcriptase [Soybean Putnam virus]
            gi|401620160|gb|AFP95350.1| reverse transcriptase
            [Soybean Putnam virus]
          Length = 699

 Score =  116 bits (291), Expect = 2e-23
 Identities = 68/211 (32%), Positives = 106/211 (50%), Gaps = 4/211 (1%)
 Frame = -2

Query: 692  QEHVIKKINDFLDKLADKLQCQMFLGFLNYVHQYIPNLSKETREIWTTMTS-APYQWTSK 516
            Q H+++ I+ F DK+ DK Q Q FLG L Y   YIP L++  + + + +    P+ WT  
Sbjct: 485  QNHILEHIHKFPDKIEDKKQLQRFLGILTYASDYIPKLAEIRKPLQSKLKKDVPWTWTHD 544

Query: 515  ASTQVNKLKEICQHIPAL-ESIFGGPFILAIDASEHEWAVVLLKKEDKEEN--ICMYASG 345
                ++K+K+  +  P L         I+  DAS   W  +L  + +  ++  IC Y SG
Sbjct: 545  DINYMSKIKKNLKSFPTLYHPKLTDTLIIETDASGSFWGGILKARTENSDSELICRYTSG 604

Query: 344  AFKPNELKY*LADKEILAALKGVEKFHSFFINEDFTLRTDSSGLATLMKKPIKSSPKLKR 165
            +FK  EL Y   +KEILA +  ++KF  +     F +RTD+      +K  +K   K  R
Sbjct: 605  SFKAAELNYHSNEKEILAVMNTIKKFTGYLTPVKFLIRTDNKNFTHFLKINLKGDYKQGR 664

Query: 164  FT*WK*LLSQYEFKVHQIPGIQNALLDALTR 72
               W+   S+Y F+V  + G +N   D LTR
Sbjct: 665  LVRWQMWFSRYVFEVEHLSGDKNVFADFLTR 695


>gb|AAD37341.1|AF140604_5 reverse transcriptase [Cauliflower mosaic virus]
          Length = 674

 Score =  116 bits (290), Expect = 2e-23
 Identities = 72/213 (33%), Positives = 106/213 (49%), Gaps = 6/213 (2%)
 Frame = -2

Query: 692  QEHVIKKINDFLDKLADKLQCQMFLGFLNYVHQYIPNLSKETREIWTTMT-SAPYQWTSK 516
            Q H+++ IN F D L DK Q Q FLG L Y   YIP L++  + +   +  + P++WT +
Sbjct: 455  QGHILEHINKFPDTLEDKKQLQRFLGILTYASDYIPKLAQIRKPLQAKLKENVPWKWTKE 514

Query: 515  ASTQVNKLKEICQHIPALES-IFGGPFILAIDASEHEWAVVL----LKKEDKEENICMYA 351
             +  + K+K+  Q  P L   +     I+  DAS+  W  +L    + +    E IC YA
Sbjct: 515  DTLYMQKVKKNLQGFPPLHRPLPEEKLIIETDASDDYWGGMLKAIQINEGTNTELICRYA 574

Query: 350  SGAFKPNELKY*LADKEILAALKGVEKFHSFFINEDFTLRTDSSGLATLMKKPIKSSPKL 171
            SG+FK  E  Y   DKE LA +  ++KF  +     F +RTD++   + +    K   KL
Sbjct: 575  SGSFKAAEKNYHSNDKETLAVINTIKKFSIYLTPVHFLIRTDNTHFKSFVNLNYKGDSKL 634

Query: 170  KRFT*WK*LLSQYEFKVHQIPGIQNALLDALTR 72
             R   W+  LS Y F V  I G  N   D L+R
Sbjct: 635  GRNIRWQAWLSHYSFDVEHIKGTDNRFADFLSR 667


>sp|Q00962.1|POL_CAMVN RecName: Full=Enzymatic polyprotein; Includes: RecName: Full=Aspartic
            protease; Includes: RecName: Full=Endonuclease; Includes:
            RecName: Full=Reverse transcriptase
            gi|331571|gb|AAA46358.1| reverse transcriptase
            [Cauliflower mosaic virus] gi|445598|prf||1909346E
            reverse transcriptase
          Length = 680

 Score =  116 bits (290), Expect = 2e-23
 Identities = 72/213 (33%), Positives = 106/213 (49%), Gaps = 6/213 (2%)
 Frame = -2

Query: 692  QEHVIKKINDFLDKLADKLQCQMFLGFLNYVHQYIPNLSKETREIWTTMT-SAPYQWTSK 516
            Q H+++ IN F D L DK Q Q FLG L Y   YIPNL++  + +   +  + P++WT +
Sbjct: 461  QGHILEHINKFPDTLEDKKQLQRFLGILTYASDYIPNLAQMRQPLQAKLKENVPWKWTKE 520

Query: 515  ASTQVNKLKEICQHIPALES-IFGGPFILAIDASEHEWAVVL----LKKEDKEENICMYA 351
             +  + K+K+  Q  P L   +     I+  DAS+  W  +L    + +    E IC Y 
Sbjct: 521  DTLYMQKVKKNLQGFPPLHHPLPEEKLIIETDASDDYWGGMLKAIKINEGTNTELICRYR 580

Query: 350  SGAFKPNELKY*LADKEILAALKGVEKFHSFFINEDFTLRTDSSGLATLMKKPIKSSPKL 171
            SG+FK  E  Y   DKE LA +  ++KF  +     F +RTD++   + +    K   KL
Sbjct: 581  SGSFKAAERNYHSNDKETLAVINTIKKFSIYLTPVHFLIRTDNTHFKSFVNLNYKGDSKL 640

Query: 170  KRFT*WK*LLSQYEFKVHQIPGIQNALLDALTR 72
             R   W+  LS Y F V  I G  N   D L+R
Sbjct: 641  GRNIRWQAWLSHYSFDVEHIKGTDNHFADFLSR 673


>sp|Q02964.1|POL_CAMVE RecName: Full=Enzymatic polyprotein; Includes: RecName: Full=Aspartic
            protease; Includes: RecName: Full=Endonuclease; Includes:
            RecName: Full=Reverse transcriptase
            gi|293185|gb|AAA62375.1| reverse transcriptase
            [Cauliflower mosaic virus]
          Length = 679

 Score =  115 bits (289), Expect = 3e-23
 Identities = 72/213 (33%), Positives = 106/213 (49%), Gaps = 6/213 (2%)
 Frame = -2

Query: 692  QEHVIKKINDFLDKLADKLQCQMFLGFLNYVHQYIPNLSKETREIWTTMT-SAPYQWTSK 516
            Q H+++ IN F D L DK Q Q FLG L Y   YIP L++  + +   +  + P++WT +
Sbjct: 460  QGHILEHINKFPDTLEDKKQLQRFLGILTYASDYIPKLAQIRKPLQAKLKENVPWKWTKE 519

Query: 515  ASTQVNKLKEICQHIPALES-IFGGPFILAIDASEHEWAVVL----LKKEDKEENICMYA 351
             +  + K+K+  Q  P L   +     I+  DAS+  W  +L    + +    E IC YA
Sbjct: 520  DTLYMQKVKKNLQGFPPLHHPLPEEKLIIETDASDDYWGGMLKAIKINEGTNTELICRYA 579

Query: 350  SGAFKPNELKY*LADKEILAALKGVEKFHSFFINEDFTLRTDSSGLATLMKKPIKSSPKL 171
            SG+FK  E  Y   DKE LA +  ++KF  +     F +RTD++   + +    K   KL
Sbjct: 580  SGSFKAAERNYHSNDKETLAVINTIKKFSIYLTPVHFLIRTDNTHFKSFVNLNYKGDSKL 639

Query: 170  KRFT*WK*LLSQYEFKVHQIPGIQNALLDALTR 72
             R   W+  LS Y F V  I G  N   D L+R
Sbjct: 640  GRNIRWQAWLSHYSFDVEHIKGTDNHFADFLSR 672


>sp|P03556.1|POL_CAMVD RecName: Full=Enzymatic polyprotein; Includes: RecName: Full=Aspartic
            protease; Includes: RecName: Full=Endonuclease; Includes:
            RecName: Full=Reverse transcriptase
          Length = 674

 Score =  115 bits (289), Expect = 3e-23
 Identities = 72/213 (33%), Positives = 106/213 (49%), Gaps = 6/213 (2%)
 Frame = -2

Query: 692  QEHVIKKINDFLDKLADKLQCQMFLGFLNYVHQYIPNLSKETREIWTTMT-SAPYQWTSK 516
            Q H+++ IN F D L DK Q Q FLG L Y   YIP L++  + +   +  + P++WT +
Sbjct: 455  QGHILEHINKFPDTLEDKKQLQRFLGILTYASDYIPKLAQIRKPLQAKLKENVPWKWTKE 514

Query: 515  ASTQVNKLKEICQHIPALES-IFGGPFILAIDASEHEWAVVL----LKKEDKEENICMYA 351
             +  + K+K+  Q  P L   +     I+  DAS+  W  +L    + +    E IC YA
Sbjct: 515  DTLYMQKVKKNLQGFPPLHHPLPEEKLIIETDASDDYWGGMLKAIKINEGTNTELICRYA 574

Query: 350  SGAFKPNELKY*LADKEILAALKGVEKFHSFFINEDFTLRTDSSGLATLMKKPIKSSPKL 171
            SG+FK  E  Y   DKE LA +  ++KF  +     F +RTD++   + +    K   KL
Sbjct: 575  SGSFKAAEKNYHSNDKETLAVINTIKKFSIYLTPVHFLIRTDNTHFKSFVNLNYKGDSKL 634

Query: 170  KRFT*WK*LLSQYEFKVHQIPGIQNALLDALTR 72
             R   W+  LS Y F V  I G  N   D L+R
Sbjct: 635  GRNIRWQAWLSHYSFDVEHIKGTDNHFADFLSR 667


>gb|AGT42147.1| reverse transcriptase [Cauliflower mosaic virus]
            gi|530722499|gb|AGT42154.1| reverse transcriptase
            [Cauliflower mosaic virus]
          Length = 675

 Score =  115 bits (289), Expect = 3e-23
 Identities = 72/213 (33%), Positives = 106/213 (49%), Gaps = 6/213 (2%)
 Frame = -2

Query: 692  QEHVIKKINDFLDKLADKLQCQMFLGFLNYVHQYIPNLSKETREIWTTMT-SAPYQWTSK 516
            Q H+++ IN F D L DK Q Q FLG L Y   YIP L++  + +   +  + P++WT +
Sbjct: 456  QGHILEHINKFPDTLEDKKQLQRFLGILTYASDYIPKLAQIRKPLQAKLKENVPWKWTKE 515

Query: 515  ASTQVNKLKEICQHIPALES-IFGGPFILAIDASEHEWAVVL----LKKEDKEENICMYA 351
             +  + K+K+  Q  P L   +     I+  DAS+  W  +L    + +    E IC YA
Sbjct: 516  DTLYMQKVKKNLQGFPPLHHPLPEEKLIIETDASDDYWGGMLKAIKINEGTNTELICRYA 575

Query: 350  SGAFKPNELKY*LADKEILAALKGVEKFHSFFINEDFTLRTDSSGLATLMKKPIKSSPKL 171
            SG+FK  E  Y   DKE LA +  ++KF  +     F +RTD++   + +    K   KL
Sbjct: 576  SGSFKAAEKNYHSNDKETLAVINTIKKFSIYLTPVHFLIRTDNTHFKSFVNLNYKGDSKL 635

Query: 170  KRFT*WK*LLSQYEFKVHQIPGIQNALLDALTR 72
             R   W+  LS Y F V  I G  N   D L+R
Sbjct: 636  GRNIRWQAWLSHYSFDVEHIKGTDNHFADFLSR 668


>gb|AGT42140.1| reverse transcriptase [Cauliflower mosaic virus]
          Length = 675

 Score =  115 bits (289), Expect = 3e-23
 Identities = 72/213 (33%), Positives = 106/213 (49%), Gaps = 6/213 (2%)
 Frame = -2

Query: 692  QEHVIKKINDFLDKLADKLQCQMFLGFLNYVHQYIPNLSKETREIWTTMT-SAPYQWTSK 516
            Q H+++ IN F D L DK Q Q FLG L Y   YIP L++  + +   +  + P++WT +
Sbjct: 456  QGHILEHINKFPDTLEDKKQLQRFLGILTYASDYIPKLAQIRKPLQAKLKENVPWKWTKE 515

Query: 515  ASTQVNKLKEICQHIPALES-IFGGPFILAIDASEHEWAVVL----LKKEDKEENICMYA 351
             +  + K+K+  Q  P L   +     I+  DAS+  W  +L    + +    E IC YA
Sbjct: 516  DTLYMQKVKKNLQGFPPLHHPLPEEKLIIETDASDDYWGGMLKAIKINEGTNTELICRYA 575

Query: 350  SGAFKPNELKY*LADKEILAALKGVEKFHSFFINEDFTLRTDSSGLATLMKKPIKSSPKL 171
            SG+FK  E  Y   DKE LA +  ++KF  +     F +RTD++   + +    K   KL
Sbjct: 576  SGSFKAAEKNYHSNDKETLAVINTIKKFSIYLTPVHFLIRTDNTHFKSFVNLNYKGDSKL 635

Query: 170  KRFT*WK*LLSQYEFKVHQIPGIQNALLDALTR 72
             R   W+  LS Y F V  I G  N   D L+R
Sbjct: 636  GRNIRWQAWLSHYSFDVEHIKGTDNHFADFLSR 668


>gb|AGT42112.1| reverse transcriptase [Cauliflower mosaic virus]
          Length = 675

 Score =  115 bits (289), Expect = 3e-23
 Identities = 72/213 (33%), Positives = 106/213 (49%), Gaps = 6/213 (2%)
 Frame = -2

Query: 692  QEHVIKKINDFLDKLADKLQCQMFLGFLNYVHQYIPNLSKETREIWTTMT-SAPYQWTSK 516
            Q H+++ IN F D L DK Q Q FLG L Y   YIP L++  + +   +  + P++WT +
Sbjct: 456  QGHILEHINKFPDTLEDKKQLQRFLGILTYASDYIPKLAQIRKPLQAKLKENVPWKWTKE 515

Query: 515  ASTQVNKLKEICQHIPALES-IFGGPFILAIDASEHEWAVVL----LKKEDKEENICMYA 351
             +  + K+K+  Q  P L   +     I+  DAS+  W  +L    + +    E IC YA
Sbjct: 516  DTLYMQKVKKNLQGFPPLHHPLPEEKLIIETDASDDYWGGMLKAIKINEGTNTELICRYA 575

Query: 350  SGAFKPNELKY*LADKEILAALKGVEKFHSFFINEDFTLRTDSSGLATLMKKPIKSSPKL 171
            SG+FK  E  Y   DKE LA +  ++KF  +     F +RTD++   + +    K   KL
Sbjct: 576  SGSFKAAEKNYHSNDKETLAVINTIKKFSIYLTPVHFLIRTDNTHFKSFVNLNYKGDSKL 635

Query: 170  KRFT*WK*LLSQYEFKVHQIPGIQNALLDALTR 72
             R   W+  LS Y F V  I G  N   D L+R
Sbjct: 636  GRNIRWQAWLSHYSFDVEHIKGTDNHFADFLSR 668


>gb|AGT42098.1| reverse transcriptase [Cauliflower mosaic virus]
            gi|530722467|gb|AGT42126.1| reverse transcriptase
            [Cauliflower mosaic virus] gi|530722475|gb|AGT42133.1|
            reverse transcriptase [Cauliflower mosaic virus]
          Length = 675

 Score =  115 bits (289), Expect = 3e-23
 Identities = 72/213 (33%), Positives = 106/213 (49%), Gaps = 6/213 (2%)
 Frame = -2

Query: 692  QEHVIKKINDFLDKLADKLQCQMFLGFLNYVHQYIPNLSKETREIWTTMT-SAPYQWTSK 516
            Q H+++ IN F D L DK Q Q FLG L Y   YIP L++  + +   +  + P++WT +
Sbjct: 456  QGHILEHINKFPDTLEDKKQLQRFLGILTYASDYIPKLAQIRKPLQAKLKENVPWKWTKE 515

Query: 515  ASTQVNKLKEICQHIPALES-IFGGPFILAIDASEHEWAVVL----LKKEDKEENICMYA 351
             +  + K+K+  Q  P L   +     I+  DAS+  W  +L    + +    E IC YA
Sbjct: 516  DTLYMQKVKKNLQGFPPLHHPLPEEKLIIETDASDDYWGGMLKAIKINEGTNTELICRYA 575

Query: 350  SGAFKPNELKY*LADKEILAALKGVEKFHSFFINEDFTLRTDSSGLATLMKKPIKSSPKL 171
            SG+FK  E  Y   DKE LA +  ++KF  +     F +RTD++   + +    K   KL
Sbjct: 576  SGSFKAAEKNYHSNDKETLAVINTIKKFSIYLTPVHFLIRTDNTHFKSFVNLNYKGDSKL 635

Query: 170  KRFT*WK*LLSQYEFKVHQIPGIQNALLDALTR 72
             R   W+  LS Y F V  I G  N   D L+R
Sbjct: 636  GRNIRWQAWLSHYSFDVEHIKGTDNHFADFLSR 668


>gb|AGT42091.1| reverse transcriptase [Cauliflower mosaic virus]
          Length = 675

 Score =  115 bits (289), Expect = 3e-23
 Identities = 72/213 (33%), Positives = 106/213 (49%), Gaps = 6/213 (2%)
 Frame = -2

Query: 692  QEHVIKKINDFLDKLADKLQCQMFLGFLNYVHQYIPNLSKETREIWTTMT-SAPYQWTSK 516
            Q H+++ IN F D L DK Q Q FLG L Y   YIP L++  + +   +  + P++WT +
Sbjct: 456  QGHILEHINKFPDTLEDKKQLQRFLGILTYASDYIPKLAQIRKPLQAKLKENVPWKWTKE 515

Query: 515  ASTQVNKLKEICQHIPALES-IFGGPFILAIDASEHEWAVVL----LKKEDKEENICMYA 351
             +  + K+K+  Q  P L   +     I+  DAS+  W  +L    + +    E IC YA
Sbjct: 516  DTLYMQKVKKNLQGFPPLHHPLPEEKLIIETDASDDYWGGMLKAIKINEGTNTELICRYA 575

Query: 350  SGAFKPNELKY*LADKEILAALKGVEKFHSFFINEDFTLRTDSSGLATLMKKPIKSSPKL 171
            SG+FK  E  Y   DKE LA +  ++KF  +     F +RTD++   + +    K   KL
Sbjct: 576  SGSFKAAEKNYHSNDKETLAVINTIKKFSIYLTPVHFLIRTDNTHFKSFVNLNYKGDSKL 635

Query: 170  KRFT*WK*LLSQYEFKVHQIPGIQNALLDALTR 72
             R   W+  LS Y F V  I G  N   D L+R
Sbjct: 636  GRNIRWQAWLSHYSFDVEHIKGTDNHFADFLSR 668


>gb|AGT42070.1| reverse transcriptase [Cauliflower mosaic virus]
            gi|530722547|gb|AGT42196.1| reverse transcriptase
            [Cauliflower mosaic virus]
          Length = 675

 Score =  115 bits (289), Expect = 3e-23
 Identities = 72/213 (33%), Positives = 106/213 (49%), Gaps = 6/213 (2%)
 Frame = -2

Query: 692  QEHVIKKINDFLDKLADKLQCQMFLGFLNYVHQYIPNLSKETREIWTTMT-SAPYQWTSK 516
            Q H+++ IN F D L DK Q Q FLG L Y   YIP L++  + +   +  + P++WT +
Sbjct: 456  QGHILEHINKFPDTLEDKKQLQRFLGILTYASDYIPKLAQIRKPLQAKLKENVPWKWTKE 515

Query: 515  ASTQVNKLKEICQHIPALES-IFGGPFILAIDASEHEWAVVL----LKKEDKEENICMYA 351
             +  + K+K+  Q  P L   +     I+  DAS+  W  +L    + +    E IC YA
Sbjct: 516  DTLYMQKVKKNLQGFPPLHHPLPEEKLIIETDASDDYWGGMLKAIKINEGTNTELICRYA 575

Query: 350  SGAFKPNELKY*LADKEILAALKGVEKFHSFFINEDFTLRTDSSGLATLMKKPIKSSPKL 171
            SG+FK  E  Y   DKE LA +  ++KF  +     F +RTD++   + +    K   KL
Sbjct: 576  SGSFKAAEKNYHSNDKETLAVINTIKKFSIYLTPVHFLIRTDNTHFKSFVNLNYKGDSKL 635

Query: 170  KRFT*WK*LLSQYEFKVHQIPGIQNALLDALTR 72
             R   W+  LS Y F V  I G  N   D L+R
Sbjct: 636  GRNIRWQAWLSHYSFDVEHIKGTDNHFADFLSR 668