BLASTX nr result
ID: Ephedra25_contig00019382
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Ephedra25_contig00019382
(539 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_006650345.1| PREDICTED: DNA-directed RNA polymerase II su... 92 8e-17
ref|XP_006859038.1| hypothetical protein AMTR_s00068p00181410 [A... 92 8e-17
ref|XP_004982317.1| PREDICTED: DNA-directed RNA polymerase II su... 92 8e-17
ref|XP_004982316.1| PREDICTED: DNA-directed RNA polymerase II su... 92 8e-17
gb|EMS54198.1| DNA-directed RNA polymerase II subunit RPB2 [Trit... 92 8e-17
gb|AAC08960.1| RNA polymerase II second largest subunit [Peperom... 92 8e-17
gb|AAC08961.1| RNA polymerase II second largest subunit [Nymphae... 92 8e-17
gb|AAB94061.1| RPB140 [Magnolia virginiana] 92 8e-17
gb|AAC08937.1| RPB140 [Chloranthus spicatus] 92 8e-17
emb|CAD90164.1| DNA-directed RNA polymerase II largest subunit [... 92 8e-17
emb|CAD89358.1| RNA polymerase II, second largest subunit [Vitis... 92 8e-17
ref|XP_003561873.1| PREDICTED: DNA-directed RNA polymerase II su... 92 8e-17
ref|XP_002971836.1| hypothetical protein SELMODRAFT_148107 [Sela... 92 8e-17
ref|XP_002972363.1| hypothetical protein SELMODRAFT_172903 [Sela... 92 8e-17
ref|XP_002466750.1| hypothetical protein SORBIDRAFT_01g013470 [S... 92 8e-17
gb|EEE59590.1| hypothetical protein OsJ_11898 [Oryza sativa Japo... 92 8e-17
ref|XP_001766425.1| predicted protein [Physcomitrella patens] gi... 92 8e-17
ref|XP_002274051.1| PREDICTED: DNA-directed RNA polymerase II su... 92 8e-17
gb|AAW22892.1| RNA polymerase II second largest subunit [Dickson... 92 8e-17
gb|AAW22893.1| RNA polymerase II second largest subunit [Dryopte... 92 8e-17
>ref|XP_006650345.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like [Oryza
brachyantha]
Length = 1184
Score = 92.0 bits (227), Expect = 8e-17
Identities = 50/79 (63%), Positives = 53/79 (67%)
Frame = -2
Query: 532 SPRNTYQLAMGKQAMWIYVTNYQLRIVSVVLSMWLIRLLSTSMSVLQDTLAYVLYYPQRP 353
SPRNTYQ AMGKQAM IYVTNYQLR+ DTLAYVLYYPQ+P
Sbjct: 721 SPRNTYQSAMGKQAMGIYVTNYQLRM---------------------DTLAYVLYYPQKP 759
Query: 352 LVTTRAMDHLHFR*LPIEI 296
LVTTRAM+HLHFR LP I
Sbjct: 760 LVTTRAMEHLHFRQLPAGI 778
>ref|XP_006859038.1| hypothetical protein AMTR_s00068p00181410 [Amborella trichopoda]
gi|548863150|gb|ERN20505.1| hypothetical protein
AMTR_s00068p00181410 [Amborella trichopoda]
Length = 1190
Score = 92.0 bits (227), Expect = 8e-17
Identities = 50/79 (63%), Positives = 53/79 (67%)
Frame = -2
Query: 532 SPRNTYQLAMGKQAMWIYVTNYQLRIVSVVLSMWLIRLLSTSMSVLQDTLAYVLYYPQRP 353
SPRNTYQ AMGKQAM IYVTNYQLR+ DTLAYVLYYPQ+P
Sbjct: 721 SPRNTYQSAMGKQAMGIYVTNYQLRM---------------------DTLAYVLYYPQKP 759
Query: 352 LVTTRAMDHLHFR*LPIEI 296
LVTTRAM+HLHFR LP I
Sbjct: 760 LVTTRAMEHLHFRQLPAGI 778
>ref|XP_004982317.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like isoform
X2 [Setaria italica]
Length = 1190
Score = 92.0 bits (227), Expect = 8e-17
Identities = 50/79 (63%), Positives = 53/79 (67%)
Frame = -2
Query: 532 SPRNTYQLAMGKQAMWIYVTNYQLRIVSVVLSMWLIRLLSTSMSVLQDTLAYVLYYPQRP 353
SPRNTYQ AMGKQAM IYVTNYQLR+ DTLAYVLYYPQ+P
Sbjct: 727 SPRNTYQSAMGKQAMGIYVTNYQLRM---------------------DTLAYVLYYPQKP 765
Query: 352 LVTTRAMDHLHFR*LPIEI 296
LVTTRAM+HLHFR LP I
Sbjct: 766 LVTTRAMEHLHFRQLPAGI 784
>ref|XP_004982316.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like isoform
X1 [Setaria italica]
Length = 1226
Score = 92.0 bits (227), Expect = 8e-17
Identities = 50/79 (63%), Positives = 53/79 (67%)
Frame = -2
Query: 532 SPRNTYQLAMGKQAMWIYVTNYQLRIVSVVLSMWLIRLLSTSMSVLQDTLAYVLYYPQRP 353
SPRNTYQ AMGKQAM IYVTNYQLR+ DTLAYVLYYPQ+P
Sbjct: 763 SPRNTYQSAMGKQAMGIYVTNYQLRM---------------------DTLAYVLYYPQKP 801
Query: 352 LVTTRAMDHLHFR*LPIEI 296
LVTTRAM+HLHFR LP I
Sbjct: 802 LVTTRAMEHLHFRQLPAGI 820
>gb|EMS54198.1| DNA-directed RNA polymerase II subunit RPB2 [Triticum urartu]
Length = 1204
Score = 92.0 bits (227), Expect = 8e-17
Identities = 50/79 (63%), Positives = 53/79 (67%)
Frame = -2
Query: 532 SPRNTYQLAMGKQAMWIYVTNYQLRIVSVVLSMWLIRLLSTSMSVLQDTLAYVLYYPQRP 353
SPRNTYQ AMGKQAM IYVTNYQLR+ DTLAYVLYYPQ+P
Sbjct: 716 SPRNTYQSAMGKQAMGIYVTNYQLRM---------------------DTLAYVLYYPQKP 754
Query: 352 LVTTRAMDHLHFR*LPIEI 296
LVTTRAM+HLHFR LP I
Sbjct: 755 LVTTRAMEHLHFRQLPAGI 773
>gb|AAC08960.1| RNA polymerase II second largest subunit [Peperomia caperata]
Length = 554
Score = 92.0 bits (227), Expect = 8e-17
Identities = 50/79 (63%), Positives = 53/79 (67%)
Frame = -2
Query: 532 SPRNTYQLAMGKQAMWIYVTNYQLRIVSVVLSMWLIRLLSTSMSVLQDTLAYVLYYPQRP 353
SPRNTYQ AMGKQAM IYVTNYQLR+ DTLAYVLYYPQ+P
Sbjct: 216 SPRNTYQSAMGKQAMGIYVTNYQLRM---------------------DTLAYVLYYPQKP 254
Query: 352 LVTTRAMDHLHFR*LPIEI 296
LVTTRAM+HLHFR LP I
Sbjct: 255 LVTTRAMEHLHFRQLPAGI 273
>gb|AAC08961.1| RNA polymerase II second largest subunit [Nymphaea odorata]
Length = 555
Score = 92.0 bits (227), Expect = 8e-17
Identities = 50/79 (63%), Positives = 53/79 (67%)
Frame = -2
Query: 532 SPRNTYQLAMGKQAMWIYVTNYQLRIVSVVLSMWLIRLLSTSMSVLQDTLAYVLYYPQRP 353
SPRNTYQ AMGKQAM IYVTNYQLR+ DTLAYVLYYPQ+P
Sbjct: 217 SPRNTYQSAMGKQAMGIYVTNYQLRM---------------------DTLAYVLYYPQKP 255
Query: 352 LVTTRAMDHLHFR*LPIEI 296
LVTTRAM+HLHFR LP I
Sbjct: 256 LVTTRAMEHLHFRQLPAGI 274
>gb|AAB94061.1| RPB140 [Magnolia virginiana]
Length = 555
Score = 92.0 bits (227), Expect = 8e-17
Identities = 50/79 (63%), Positives = 53/79 (67%)
Frame = -2
Query: 532 SPRNTYQLAMGKQAMWIYVTNYQLRIVSVVLSMWLIRLLSTSMSVLQDTLAYVLYYPQRP 353
SPRNTYQ AMGKQAM IYVTNYQLR+ DTLAYVLYYPQ+P
Sbjct: 217 SPRNTYQSAMGKQAMGIYVTNYQLRM---------------------DTLAYVLYYPQKP 255
Query: 352 LVTTRAMDHLHFR*LPIEI 296
LVTTRAM+HLHFR LP I
Sbjct: 256 LVTTRAMEHLHFRQLPAGI 274
>gb|AAC08937.1| RPB140 [Chloranthus spicatus]
Length = 533
Score = 92.0 bits (227), Expect = 8e-17
Identities = 50/79 (63%), Positives = 53/79 (67%)
Frame = -2
Query: 532 SPRNTYQLAMGKQAMWIYVTNYQLRIVSVVLSMWLIRLLSTSMSVLQDTLAYVLYYPQRP 353
SPRNTYQ AMGKQAM IYVTNYQLR+ DTLAYVLYYPQ+P
Sbjct: 195 SPRNTYQSAMGKQAMGIYVTNYQLRM---------------------DTLAYVLYYPQKP 233
Query: 352 LVTTRAMDHLHFR*LPIEI 296
LVTTRAM+HLHFR LP I
Sbjct: 234 LVTTRAMEHLHFRQLPAGI 252
>emb|CAD90164.1| DNA-directed RNA polymerase II largest subunit [Mimulus guttatus]
Length = 348
Score = 92.0 bits (227), Expect = 8e-17
Identities = 50/79 (63%), Positives = 53/79 (67%)
Frame = -2
Query: 532 SPRNTYQLAMGKQAMWIYVTNYQLRIVSVVLSMWLIRLLSTSMSVLQDTLAYVLYYPQRP 353
SPRNTYQ AMGKQAM IYVTNYQLR+ DTLAYVLYYPQ+P
Sbjct: 211 SPRNTYQSAMGKQAMGIYVTNYQLRM---------------------DTLAYVLYYPQKP 249
Query: 352 LVTTRAMDHLHFR*LPIEI 296
LVTTRAM+HLHFR LP I
Sbjct: 250 LVTTRAMEHLHFRQLPAGI 268
>emb|CAD89358.1| RNA polymerase II, second largest subunit [Vitis piasezkii]
Length = 551
Score = 92.0 bits (227), Expect = 8e-17
Identities = 50/79 (63%), Positives = 53/79 (67%)
Frame = -2
Query: 532 SPRNTYQLAMGKQAMWIYVTNYQLRIVSVVLSMWLIRLLSTSMSVLQDTLAYVLYYPQRP 353
SPRNTYQ AMGKQAM IYVTNYQLR+ DTLAYVLYYPQ+P
Sbjct: 213 SPRNTYQSAMGKQAMGIYVTNYQLRM---------------------DTLAYVLYYPQKP 251
Query: 352 LVTTRAMDHLHFR*LPIEI 296
LVTTRAM+HLHFR LP I
Sbjct: 252 LVTTRAMEHLHFRQLPAGI 270
>ref|XP_003561873.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like
[Brachypodium distachyon]
Length = 1228
Score = 92.0 bits (227), Expect = 8e-17
Identities = 50/79 (63%), Positives = 53/79 (67%)
Frame = -2
Query: 532 SPRNTYQLAMGKQAMWIYVTNYQLRIVSVVLSMWLIRLLSTSMSVLQDTLAYVLYYPQRP 353
SPRNTYQ AMGKQAM IYVTNYQLR+ DTLAYVLYYPQ+P
Sbjct: 765 SPRNTYQSAMGKQAMGIYVTNYQLRM---------------------DTLAYVLYYPQKP 803
Query: 352 LVTTRAMDHLHFR*LPIEI 296
LVTTRAM+HLHFR LP I
Sbjct: 804 LVTTRAMEHLHFRQLPAGI 822
>ref|XP_002971836.1| hypothetical protein SELMODRAFT_148107 [Selaginella moellendorffii]
gi|300160135|gb|EFJ26753.1| hypothetical protein
SELMODRAFT_148107 [Selaginella moellendorffii]
Length = 1178
Score = 92.0 bits (227), Expect = 8e-17
Identities = 50/79 (63%), Positives = 53/79 (67%)
Frame = -2
Query: 532 SPRNTYQLAMGKQAMWIYVTNYQLRIVSVVLSMWLIRLLSTSMSVLQDTLAYVLYYPQRP 353
SPRNTYQ AMGKQAM IYVTNYQLR+ DTLAYVLYYPQ+P
Sbjct: 714 SPRNTYQSAMGKQAMGIYVTNYQLRM---------------------DTLAYVLYYPQKP 752
Query: 352 LVTTRAMDHLHFR*LPIEI 296
LVTTRAM+HLHFR LP I
Sbjct: 753 LVTTRAMEHLHFRQLPAGI 771
>ref|XP_002972363.1| hypothetical protein SELMODRAFT_172903 [Selaginella moellendorffii]
gi|300159830|gb|EFJ26449.1| hypothetical protein
SELMODRAFT_172903 [Selaginella moellendorffii]
Length = 1178
Score = 92.0 bits (227), Expect = 8e-17
Identities = 50/79 (63%), Positives = 53/79 (67%)
Frame = -2
Query: 532 SPRNTYQLAMGKQAMWIYVTNYQLRIVSVVLSMWLIRLLSTSMSVLQDTLAYVLYYPQRP 353
SPRNTYQ AMGKQAM IYVTNYQLR+ DTLAYVLYYPQ+P
Sbjct: 714 SPRNTYQSAMGKQAMGIYVTNYQLRM---------------------DTLAYVLYYPQKP 752
Query: 352 LVTTRAMDHLHFR*LPIEI 296
LVTTRAM+HLHFR LP I
Sbjct: 753 LVTTRAMEHLHFRQLPAGI 771
>ref|XP_002466750.1| hypothetical protein SORBIDRAFT_01g013470 [Sorghum bicolor]
gi|241920604|gb|EER93748.1| hypothetical protein
SORBIDRAFT_01g013470 [Sorghum bicolor]
Length = 1218
Score = 92.0 bits (227), Expect = 8e-17
Identities = 50/79 (63%), Positives = 53/79 (67%)
Frame = -2
Query: 532 SPRNTYQLAMGKQAMWIYVTNYQLRIVSVVLSMWLIRLLSTSMSVLQDTLAYVLYYPQRP 353
SPRNTYQ AMGKQAM IYVTNYQLR+ DTLAYVLYYPQ+P
Sbjct: 755 SPRNTYQSAMGKQAMGIYVTNYQLRM---------------------DTLAYVLYYPQKP 793
Query: 352 LVTTRAMDHLHFR*LPIEI 296
LVTTRAM+HLHFR LP I
Sbjct: 794 LVTTRAMEHLHFRQLPAGI 812
>gb|EEE59590.1| hypothetical protein OsJ_11898 [Oryza sativa Japonica Group]
Length = 1218
Score = 92.0 bits (227), Expect = 8e-17
Identities = 50/79 (63%), Positives = 53/79 (67%)
Frame = -2
Query: 532 SPRNTYQLAMGKQAMWIYVTNYQLRIVSVVLSMWLIRLLSTSMSVLQDTLAYVLYYPQRP 353
SPRNTYQ AMGKQAM IYVTNYQLR+ DTLAYVLYYPQ+P
Sbjct: 755 SPRNTYQSAMGKQAMGIYVTNYQLRM---------------------DTLAYVLYYPQKP 793
Query: 352 LVTTRAMDHLHFR*LPIEI 296
LVTTRAM+HLHFR LP I
Sbjct: 794 LVTTRAMEHLHFRQLPAGI 812
>ref|XP_001766425.1| predicted protein [Physcomitrella patens]
gi|162682334|gb|EDQ68753.1| predicted protein
[Physcomitrella patens]
Length = 1185
Score = 92.0 bits (227), Expect = 8e-17
Identities = 50/79 (63%), Positives = 53/79 (67%)
Frame = -2
Query: 532 SPRNTYQLAMGKQAMWIYVTNYQLRIVSVVLSMWLIRLLSTSMSVLQDTLAYVLYYPQRP 353
SPRNTYQ AMGKQAM IYVTNYQLR+ DTLAYVLYYPQ+P
Sbjct: 719 SPRNTYQSAMGKQAMGIYVTNYQLRM---------------------DTLAYVLYYPQKP 757
Query: 352 LVTTRAMDHLHFR*LPIEI 296
LVTTRAM+HLHFR LP I
Sbjct: 758 LVTTRAMEHLHFRQLPAGI 776
>ref|XP_002274051.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 [Vitis
vinifera] gi|147841183|emb|CAN72948.1| hypothetical
protein VITISV_033708 [Vitis vinifera]
gi|302143287|emb|CBI21848.3| unnamed protein product
[Vitis vinifera]
Length = 1193
Score = 92.0 bits (227), Expect = 8e-17
Identities = 50/79 (63%), Positives = 53/79 (67%)
Frame = -2
Query: 532 SPRNTYQLAMGKQAMWIYVTNYQLRIVSVVLSMWLIRLLSTSMSVLQDTLAYVLYYPQRP 353
SPRNTYQ AMGKQAM IYVTNYQLR+ DTLAYVLYYPQ+P
Sbjct: 728 SPRNTYQSAMGKQAMGIYVTNYQLRM---------------------DTLAYVLYYPQKP 766
Query: 352 LVTTRAMDHLHFR*LPIEI 296
LVTTRAM+HLHFR LP I
Sbjct: 767 LVTTRAMEHLHFRQLPAGI 785
>gb|AAW22892.1| RNA polymerase II second largest subunit [Dicksonia antarctica]
Length = 525
Score = 92.0 bits (227), Expect = 8e-17
Identities = 50/79 (63%), Positives = 53/79 (67%)
Frame = -2
Query: 532 SPRNTYQLAMGKQAMWIYVTNYQLRIVSVVLSMWLIRLLSTSMSVLQDTLAYVLYYPQRP 353
SPRNTYQ AMGKQAM IYVTNYQLR+ DTLAYVLYYPQ+P
Sbjct: 194 SPRNTYQSAMGKQAMGIYVTNYQLRM---------------------DTLAYVLYYPQKP 232
Query: 352 LVTTRAMDHLHFR*LPIEI 296
LVTTRAM+HLHFR LP I
Sbjct: 233 LVTTRAMEHLHFRQLPAGI 251
>gb|AAW22893.1| RNA polymerase II second largest subunit [Dryopteris filix-mas]
Length = 459
Score = 92.0 bits (227), Expect = 8e-17
Identities = 50/79 (63%), Positives = 53/79 (67%)
Frame = -2
Query: 532 SPRNTYQLAMGKQAMWIYVTNYQLRIVSVVLSMWLIRLLSTSMSVLQDTLAYVLYYPQRP 353
SPRNTYQ AMGKQAM IYVTNYQLR+ DTLAYVLYYPQ+P
Sbjct: 198 SPRNTYQSAMGKQAMGIYVTNYQLRM---------------------DTLAYVLYYPQKP 236
Query: 352 LVTTRAMDHLHFR*LPIEI 296
LVTTRAM+HLHFR LP I
Sbjct: 237 LVTTRAMEHLHFRQLPAGI 255