BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ephedra25_contig00019302
         (1603 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_006843179.1| hypothetical protein AMTR_s00146p00072100 [A...   434   e-119
ref|XP_003572398.1| PREDICTED: RNA pseudourine synthase 3, mitoc...   412   e-112
gb|EAZ43360.1| hypothetical protein OsJ_27960 [Oryza sativa Japo...   411   e-112
ref|NP_001062265.1| Os08g0520100 [Oryza sativa Japonica Group] g...   411   e-112
ref|XP_002267010.1| PREDICTED: RNA pseudourine synthase 3, mitoc...   409   e-111
ref|XP_004974856.1| PREDICTED: RNA pseudouridine synthase 3, mit...   408   e-111
gb|EOY26277.1| Pseudouridine synthase family protein [Theobroma ...   407   e-111
ref|XP_004300876.1| PREDICTED: RNA pseudourine synthase 3, mitoc...   405   e-110
gb|AFW61502.1| hypothetical protein ZEAMMB73_778378 [Zea mays]        405   e-110
ref|XP_004158518.1| PREDICTED: RNA pseudourine synthase 3, mitoc...   404   e-110
ref|XP_006601250.1| PREDICTED: RNA pseudouridine synthase 3, mit...   404   e-110
ref|XP_004138653.1| PREDICTED: RNA pseudourine synthase 3, mitoc...   404   e-110
emb|CBI18448.3| unnamed protein product [Vitis vinifera]              400   e-109
ref|XP_006385075.1| hypothetical protein POPTR_0004s23670g [Popu...   400   e-109
ref|XP_004243668.1| PREDICTED: RNA pseudourine synthase 3, mitoc...   400   e-108
ref|XP_006353749.1| PREDICTED: RNA pseudouridine synthase 3, mit...   399   e-108
ref|XP_004515176.1| PREDICTED: RNA pseudourine synthase 3, mitoc...   397   e-108
dbj|BAD09700.1| putative ribosomal large subunit pseudouridine s...   397   e-108
gb|ESW32964.1| hypothetical protein PHAVU_001G032500g [Phaseolus...   396   e-107
ref|XP_006436406.1| hypothetical protein CICLE_v10031422mg [Citr...   394   e-107

>ref|XP_006843179.1| hypothetical protein AMTR_s00146p00072100 [Amborella trichopoda]
            gi|548845403|gb|ERN04854.1| hypothetical protein
            AMTR_s00146p00072100 [Amborella trichopoda]
          Length = 462

 Score =  434 bits (1117), Expect = e-119
 Identities = 226/409 (55%), Positives = 291/409 (71%), Gaps = 16/409 (3%)
 Frame = +1

Query: 223  PLAAKTYRST-ITAFKWVFYWCPDLPLPTIYNLFQTFQVLVETEESRSSGAAR------- 378
            PL  K   +  +TA  W+ ++  ++    IY  FQ  QVL E  E       +       
Sbjct: 56   PLPGKNNEAARVTAIIWLKHYFAEIDSLVIYRHFQRGQVLRECLEDGDPSEGKHHCMFIH 115

Query: 379  --KPVGDRDVLSSGCTVYLPVSIYYRKIWKKRYEPLPRGTMHPNADEIRYIRSLVLYKDR 552
              K VG  +V+ +G  +Y+PVSI   KI  KRY+ +P GT+HPNADEI Y+R LV+YKD 
Sbjct: 116  PLKKVGANEVMKNGLQIYVPVSICESKI-SKRYDTIPSGTLHPNADEIDYLRRLVMYKDS 174

Query: 553  AIIVLNRPTHLPAQASLGIHNSMDALAAATLSYEYEEGPKVVHRIDRESSGILVMGRTQE 732
            AIIVLN+P  LP + +L +HNSMDALAAA LS+ Y+EGPK+VHR+DRESSGI++MGRT E
Sbjct: 175  AIIVLNKPPKLPVKGNLPVHNSMDALAAAALSFGYDEGPKLVHRLDRESSGIILMGRTDE 234

Query: 733  SIQCLHDLFREKNIMPSENKNSVRDEIFEQRYWALVIGCPKEKEGVISAPLSKVALDEKP 912
            S + L  LF   +   +      R +   ++YWALVIG PKEK+G+ISAPLSKV L++  
Sbjct: 235  SFKRLRSLFNYGSNGLTSESTGDRCKGAIRKYWALVIGSPKEKQGLISAPLSKVLLNDGK 294

Query: 913  KERVIIS-RSELDGPQEAVTQYRVLGPTINGCSWIELCPLTGRKHQLRVHCAEALGTPIV 1089
             ER+I++  S LDG QEA+T+YRVLGPTINGCSWIELCPLTGRKHQLRVHCAEALGTPIV
Sbjct: 295  TERLILAYNSSLDGAQEAITEYRVLGPTINGCSWIELCPLTGRKHQLRVHCAEALGTPIV 354

Query: 1090 GDYKYGWYIHKRWQQIRQRDVDPDTGRRFLLKLHPHLNVNRGTVLAKVPLLHLHCRELAI 1269
            GDYKYGWY+HK W+Q+ + D DP+TG+ + ++ H +L V +G+VL+KVPLLHLHCREL I
Sbjct: 355  GDYKYGWYVHKCWKQMPRADFDPETGKPYKMRRHHNLAVQKGSVLSKVPLLHLHCRELVI 414

Query: 1270 PNVAKKLGLI-DSN----CESAYKKNTLRFVAPLPTHMAMSWNVMASCL 1401
            PN+ K      D+N    C+S  K++ LRFVAP+P+HM +SWNVM+SCL
Sbjct: 415  PNIEKYFEKSQDANKPMKCKS--KQDVLRFVAPMPSHMKISWNVMSSCL 461


>ref|XP_003572398.1| PREDICTED: RNA pseudourine synthase 3, mitochondrial-like
            [Brachypodium distachyon]
          Length = 479

 Score =  412 bits (1060), Expect = e-112
 Identities = 218/426 (51%), Positives = 281/426 (65%), Gaps = 15/426 (3%)
 Frame = +1

Query: 169  QYFALPRVPHSHYSETTTPLAAKTYRSTITAFKWVFYWCPDLPLPTIYNLFQTFQVLVET 348
            Q  +LP  P           AA      ++A  WV +   D+P   +   F   QV  E 
Sbjct: 55   QLLSLPPFPAGADPLPGRKTAAAEASRRVSAVSWVKHCFADVPQEVVQAHFNKRQVFAEC 114

Query: 349  EESRSSGAA-------RKPVGDRDVLSSGCTVYLPVSIYYRKIWKKRYEPLPRGTMHPNA 507
             +   S  +        K +   +V+  G  ++LPVS+   +I KKRYE +P  T+HPN 
Sbjct: 115  SDQEVSAVSIRSQEHHLKKIKHSEVMEPGMRIHLPVSVAEAEI-KKRYETIPAATLHPNK 173

Query: 508  DEIRYIRSLVLYKDRAIIVLNRPTHLPAQASLGIHNSMDALAAATLSYEYEEGPKVVHRI 687
            DEI Y++ LV+YKD AI+VLN+P  +P +  L +HNSMD LAAA LSY  E+GPK+VHR+
Sbjct: 174  DEIEYLKRLVIYKDSAILVLNKPPKVPMKGHLPVHNSMDVLAAAALSYGNEDGPKLVHRL 233

Query: 688  DRESSGILVMGRTQESIQCLHDLFREKNIMPSENK--NSVRDEIFEQRYWALVIGCPKEK 861
            DR++SG+L+MGRT+ES   LH LF    +  + +   NS   E + QRYWALVIG PKE 
Sbjct: 234  DRDTSGLLLMGRTKESFTRLHWLFTSVKLARTASPIWNSAC-ESYLQRYWALVIGTPKES 292

Query: 862  EGVISAPLSKVALDEKPKERVIISR-SELDGPQEAVTQYRVLGPTINGCSWIELCPLTGR 1038
            EGVISAPL+KV LD+   ERVI++  S +DG QEAVT+YRV+GPTINGCSWIELCPLTGR
Sbjct: 293  EGVISAPLTKVLLDDGKAERVILAHPSGIDGAQEAVTEYRVMGPTINGCSWIELCPLTGR 352

Query: 1039 KHQLRVHCAEALGTPIVGDYKYGWYIHKRWQQIRQRDVDPDTGRRFLLKLHPHLNVNRGT 1218
            KHQLRVHCAEALGTPIVGDYKYGW++H+RW+Q  Q D +P TG ++ L+    L V +G+
Sbjct: 353  KHQLRVHCAEALGTPIVGDYKYGWFVHQRWKQNPQPDFEPFTGEQYKLRRPEGLEVQKGS 412

Query: 1219 VLAKVPLLHLHCRELAIPNVAKKLGLI-----DSNCESAYKKNTLRFVAPLPTHMAMSWN 1383
            VL+KVPLLHLHCRE+ +PN+AK L        D    S  K N LRF+AP+P HM +SWN
Sbjct: 413  VLSKVPLLHLHCREMVVPNIAKFLSNTGDWHDDGTPWSKEKPNLLRFIAPMPAHMKISWN 472

Query: 1384 VMASCL 1401
            +M+S L
Sbjct: 473  IMSSYL 478


>gb|EAZ43360.1| hypothetical protein OsJ_27960 [Oryza sativa Japonica Group]
          Length = 509

 Score =  411 bits (1057), Expect = e-112
 Identities = 215/402 (53%), Positives = 279/402 (69%), Gaps = 19/402 (4%)
 Frame = +1

Query: 253  ITAFKWVFYWCPDLPLPTI---------YNLFQTFQVLVETEESRSSGAARKPVGDRDVL 405
            +TA  WV ++  D+P   +         Y+     +V VET +S+      K +   DV+
Sbjct: 113  VTAVSWVKHYLADVPQEVVQAHFNKRLVYSECSDHEVSVETIKSQKHHL--KKIKHNDVM 170

Query: 406  SSGCTVYLPVSIYYRKIWKKRYEPLPRGTMHPNADEIRYIRSLVLYKDRAIIVLNRPTHL 585
              G  ++LPVS+   +I KKRYE +P  T+HPN DEI Y+R LV++KD AI+VLN+P  +
Sbjct: 171  EPGMRIHLPVSVAEGEI-KKRYETIPTATLHPNKDEIEYLRRLVIHKDSAILVLNKPPKV 229

Query: 586  PAQASLGIHNSMDALAAATLSYEYEEGPKVVHRIDRESSGILVMGRTQESIQCLHDLFRE 765
            P + +L +HNSMD LAAA LSY  EEGPK+VHR+DRESSG+L+ GRT+ES   LH LF  
Sbjct: 230  PMKGNLPVHNSMDVLAAAALSYGNEEGPKLVHRLDRESSGLLLFGRTKESFTRLHWLFTS 289

Query: 766  KNIMPSENKN-SVRDEIFEQRYWALVIGCPKEKEGVISAPLSKVALDEKPKERVIISR-S 939
             N+  + ++  +   E + QRYWALVIG PKE+EG+ISAPLSKV LD+   ERVI++  S
Sbjct: 290  VNLAKTNSQVWNAACEAYMQRYWALVIGTPKEREGIISAPLSKVLLDDGKAERVILAHPS 349

Query: 940  ELDGPQEAVTQYRVLGPTINGCSWIELCPLTGRKHQLRVHCAEALGTPIVGDYKYGWYIH 1119
             +DG QEAVT YRV+GPTI+GCSWIEL PLTGRKHQLRVHCAEALGTPIVGDYKYGW++H
Sbjct: 350  GIDGAQEAVTAYRVMGPTIHGCSWIELRPLTGRKHQLRVHCAEALGTPIVGDYKYGWFVH 409

Query: 1120 KRWQQIRQRDVDPDTGRRFLLKLHPHLNVNRGTVLAKVPLLHLHCRELAIPNVAKKLGLI 1299
            +RW+Q  Q D +P TG  + L+    L + +G+VL+KVPLLHLHCRE+ IPN+AK    +
Sbjct: 410  QRWKQNPQPDFEPFTGEPYKLRRPEGLEIQKGSVLSKVPLLHLHCREMVIPNIAK---FL 466

Query: 1300 DSNCE--------SAYKKNTLRFVAPLPTHMAMSWNVMASCL 1401
             SN E        S  K N LRF+AP+P HM +SWN+M+S L
Sbjct: 467  SSNGEWHENGAPWSKEKPNLLRFIAPMPAHMKISWNIMSSYL 508


>ref|NP_001062265.1| Os08g0520100 [Oryza sativa Japonica Group]
            gi|122234516|sp|Q0J4D4.1|PUS3_ORYSJ RecName: Full=RNA
            pseudouridine synthase 3, mitochondrial; AltName:
            Full=RNA pseudouridylate synthase 3; AltName:
            Full=RNA-uridine isomerase 3; Flags: Precursor
            gi|113624234|dbj|BAF24179.1| Os08g0520100 [Oryza sativa
            Japonica Group] gi|125562210|gb|EAZ07658.1| hypothetical
            protein OsI_29911 [Oryza sativa Indica Group]
          Length = 475

 Score =  411 bits (1057), Expect = e-112
 Identities = 215/402 (53%), Positives = 279/402 (69%), Gaps = 19/402 (4%)
 Frame = +1

Query: 253  ITAFKWVFYWCPDLPLPTI---------YNLFQTFQVLVETEESRSSGAARKPVGDRDVL 405
            +TA  WV ++  D+P   +         Y+     +V VET +S+      K +   DV+
Sbjct: 79   VTAVSWVKHYLADVPQEVVQAHFNKRLVYSECSDHEVSVETIKSQKHHL--KKIKHNDVM 136

Query: 406  SSGCTVYLPVSIYYRKIWKKRYEPLPRGTMHPNADEIRYIRSLVLYKDRAIIVLNRPTHL 585
              G  ++LPVS+   +I KKRYE +P  T+HPN DEI Y+R LV++KD AI+VLN+P  +
Sbjct: 137  EPGMRIHLPVSVAEGEI-KKRYETIPTATLHPNKDEIEYLRRLVIHKDSAILVLNKPPKV 195

Query: 586  PAQASLGIHNSMDALAAATLSYEYEEGPKVVHRIDRESSGILVMGRTQESIQCLHDLFRE 765
            P + +L +HNSMD LAAA LSY  EEGPK+VHR+DRESSG+L+ GRT+ES   LH LF  
Sbjct: 196  PMKGNLPVHNSMDVLAAAALSYGNEEGPKLVHRLDRESSGLLLFGRTKESFTRLHWLFTS 255

Query: 766  KNIMPSENKN-SVRDEIFEQRYWALVIGCPKEKEGVISAPLSKVALDEKPKERVIISR-S 939
             N+  + ++  +   E + QRYWALVIG PKE+EG+ISAPLSKV LD+   ERVI++  S
Sbjct: 256  VNLAKTNSQVWNAACEAYMQRYWALVIGTPKEREGIISAPLSKVLLDDGKAERVILAHPS 315

Query: 940  ELDGPQEAVTQYRVLGPTINGCSWIELCPLTGRKHQLRVHCAEALGTPIVGDYKYGWYIH 1119
             +DG QEAVT YRV+GPTI+GCSWIEL PLTGRKHQLRVHCAEALGTPIVGDYKYGW++H
Sbjct: 316  GIDGAQEAVTAYRVMGPTIHGCSWIELRPLTGRKHQLRVHCAEALGTPIVGDYKYGWFVH 375

Query: 1120 KRWQQIRQRDVDPDTGRRFLLKLHPHLNVNRGTVLAKVPLLHLHCRELAIPNVAKKLGLI 1299
            +RW+Q  Q D +P TG  + L+    L + +G+VL+KVPLLHLHCRE+ IPN+AK    +
Sbjct: 376  QRWKQNPQPDFEPFTGEPYKLRRPEGLEIQKGSVLSKVPLLHLHCREMVIPNIAK---FL 432

Query: 1300 DSNCE--------SAYKKNTLRFVAPLPTHMAMSWNVMASCL 1401
             SN E        S  K N LRF+AP+P HM +SWN+M+S L
Sbjct: 433  SSNGEWHENGAPWSKEKPNLLRFIAPMPAHMKISWNIMSSYL 474


>ref|XP_002267010.1| PREDICTED: RNA pseudourine synthase 3, mitochondrial-like [Vitis
            vinifera]
          Length = 479

 Score =  409 bits (1052), Expect = e-111
 Identities = 207/401 (51%), Positives = 285/401 (71%), Gaps = 18/401 (4%)
 Frame = +1

Query: 253  ITAFKWVFYWCPDLPLPTIYNLFQTFQVLVETEESRSSGAAR-------KPVGDRDVLSS 411
            +TA  W+ Y+  ++P   + + F    V +E      S   +       + +   +V+ +
Sbjct: 81   VTAISWIKYYFDEIPGSVVQSHFNKGLVHMERSNLDDSSLEKEGQIKPLRKIKPNEVMEA 140

Query: 412  GCTVYLPVSIYYRKIWKKRYEPLPRGTMHPNADEIRYIRSLVLYKDRAIIVLNRPTHLPA 591
            G  +Y+PVS+   +I  KR++ +P GT+HPNADEI Y++ LV YKD AI+VLN+P  +P 
Sbjct: 141  GTRIYVPVSVAEARI-SKRFDTIPSGTLHPNADEIEYLQRLVTYKDPAILVLNKPPKVPL 199

Query: 592  QASLGIHNSMDALAAATLSYEYEEGPKVVHRIDRESSGILVMGRTQESIQCLHDLFREKN 771
            + +L +HNSMDALAAA L+++YEEGPK+VHR+DRESSG+L+MGRT+ES+  LH LF + N
Sbjct: 200  KGNLPVHNSMDALAAAALTFDYEEGPKLVHRLDRESSGLLLMGRTKESVAHLHWLFSDIN 259

Query: 772  IMPSENKNSVRDEIFE---QRYWALVIGCPKEKEGVISAPLSKVALDEKPKERVIIS-RS 939
               S +K    D+  E   QRYWALVIG PK+KEGVI APLSKV LD+   ERVI++ +S
Sbjct: 260  KAKSLSK--AWDDACEATCQRYWALVIGSPKQKEGVIHAPLSKVLLDDGKTERVILANQS 317

Query: 940  ELDGPQEAVTQYRVLGPTINGCSWIELCPLTGRKHQLRVHCAEALGTPIVGDYKYGWYIH 1119
             L+  QEA+T+YRVLGP INGCSWIELCP T RKHQLRVHCAEALGTPIVGDYKYGW++H
Sbjct: 318  GLEASQEAITEYRVLGPMINGCSWIELCPRTSRKHQLRVHCAEALGTPIVGDYKYGWFVH 377

Query: 1120 KRWQQIRQRDVDPDTGRRFLLKLHPHLNVNRGTVLAKVPLLHLHCRELAIPNVAKKLGLI 1299
            +RW+Q+ + D++P TG+ + ++    L+V +G+VL+KVPLLHLHCREL +PN+AK L ++
Sbjct: 378  RRWKQMPRVDLEPTTGKPYKMRRPEGLDVQKGSVLSKVPLLHLHCRELILPNIAKFLPIL 437

Query: 1300 DSNCES-------AYKKNTLRFVAPLPTHMAMSWNVMASCL 1401
            D   ++       + K + LRFVA +P HM +SWN+M+S L
Sbjct: 438  DPKPKNQNQYPKLSLKPDILRFVASMPNHMKISWNLMSSYL 478


>ref|XP_004974856.1| PREDICTED: RNA pseudouridine synthase 3, mitochondrial-like, partial
            [Setaria italica]
          Length = 464

 Score =  408 bits (1049), Expect = e-111
 Identities = 210/397 (52%), Positives = 276/397 (69%), Gaps = 14/397 (3%)
 Frame = +1

Query: 253  ITAFKWVFYWCPDLPLPTIYNLFQTFQVLVETEESRSSGAA-------RKPVGDRDVLSS 411
            +TA  WV ++  D+P   +   F    V  E  E   S  +        K +   DV+  
Sbjct: 68   VTAVSWVKHYFADVPQEAVQAHFNRRMVFSECSEHEFSAESIRTQKHHLKKIKHNDVMEP 127

Query: 412  GCTVYLPVSIYYRKIWKKRYEPLPRGTMHPNADEIRYIRSLVLYKDRAIIVLNRPTHLPA 591
            G  ++LPVS+   +I KKRYE +P  T+HPN DEI Y+R LV+++D +I+VLN+P  +P 
Sbjct: 128  GMRIHLPVSVAEGEI-KKRYETIPTATLHPNKDEIEYLRRLVIHRDSSILVLNKPPKVPM 186

Query: 592  QASLGIHNSMDALAAATLSYEYEEGPKVVHRIDRESSGILVMGRTQESIQCLHDLFREKN 771
            +  L +HNSMD LAAA LSY  +EGPK+VHR+DRESSG+++MGRT+ES   LH LF   N
Sbjct: 187  KGHLPVHNSMDVLAAAALSYGNKEGPKLVHRLDRESSGLILMGRTKESFTQLHWLFTSVN 246

Query: 772  IMPSENKN-SVRDEIFEQRYWALVIGCPKEKEGVISAPLSKVALDEKPKERVIISR-SEL 945
            +  + ++  +   E + Q+YWALVIG PKE+EGVISAP+SKV LD+   ERVI++  S +
Sbjct: 247  LARTTSQTWNKACEAYVQKYWALVIGTPKEREGVISAPISKVLLDDGKAERVILAHPSGI 306

Query: 946  DGPQEAVTQYRVLGPTINGCSWIELCPLTGRKHQLRVHCAEALGTPIVGDYKYGWYIHKR 1125
            DG QEA+T+YRV+GPTINGCSWIEL PLTGRKHQLRVHCAEALGTPIVGDYKYGW++H+R
Sbjct: 307  DGAQEAITEYRVMGPTINGCSWIELRPLTGRKHQLRVHCAEALGTPIVGDYKYGWFVHQR 366

Query: 1126 WQQIRQRDVDPDTGRRFLLKLHPHLNVNRGTVLAKVPLLHLHCRELAIPNVAKKLGLI-- 1299
            W+Q  Q D +P TG  + ++    L V +G+VL+KVPLLHLHCRE+ +PN+AK L  I  
Sbjct: 367  WKQNPQPDFEPFTGEPYKIRRPEGLEVQKGSVLSKVPLLHLHCREMVLPNIAKFLSSIGE 426

Query: 1300 --DSNCESAYKK-NTLRFVAPLPTHMAMSWNVMASCL 1401
              D     A +K N LRF+AP+P HM +SWNVM+S L
Sbjct: 427  WHDGGAAWAKEKPNLLRFIAPMPPHMKISWNVMSSYL 463


>gb|EOY26277.1| Pseudouridine synthase family protein [Theobroma cacao]
          Length = 471

 Score =  407 bits (1046), Expect = e-111
 Identities = 212/410 (51%), Positives = 290/410 (70%), Gaps = 17/410 (4%)
 Frame = +1

Query: 223  PLAAKTYRST--ITAFKWVFYWCPDLPLPTIYNLFQTFQVLVETEESRSSGAAR------ 378
            PL  K    T  +TA  W+ Y+  ++P   I + F    V +E+  +  +   R      
Sbjct: 63   PLPGKNPGGTARVTAISWLKYYFDEIPDSAIQSHFNKGLVQMESSNAGDTCIERDGLMKP 122

Query: 379  -KPVGDRDVLSSGCTVYLPVSIYYRKIWKKRYEPLPRGTMHPNADEIRYIRSLVLYKDRA 555
             + +   +V+  G  V++PVSI   +I  KR++ +P GT++PN DEI Y++ LV YKD A
Sbjct: 123  LRKIKHNEVMEVGTRVWVPVSIAETRI-SKRFDCIPSGTLYPNKDEIDYLQRLVKYKDYA 181

Query: 556  IIVLNRPTHLPAQASLGIHNSMDALAAATLSYEYEEGPKVVHRIDRESSGILVMGRTQES 735
            I+VLN+P  LP + SL +HNSMDALAAA LSY+++EGPK+VHR+DRESSG+L+MGRT+ES
Sbjct: 182  ILVLNKPPKLPVKGSLPVHNSMDALAAAALSYDHDEGPKLVHRLDRESSGLLLMGRTKES 241

Query: 736  IQCLHDLFREKNIMPSENK--NSVRDEIFEQRYWALVIGCPKEKEGVISAPLSKVALDEK 909
            +  LH LF + N + S  K  N   D  + QR+WALVIG PKEKEG+I APLSK+ LD+ 
Sbjct: 242  VAHLHWLFNDLNTVKSSCKAWNDACDVKY-QRFWALVIGTPKEKEGLICAPLSKILLDDG 300

Query: 910  PKERVIISRSE-LDGPQEAVTQYRVLGPTINGCSWIELCPLTGRKHQLRVHCAEALGTPI 1086
              ERVI++++  L+  QEA+T+YRVLGP INGCSWIEL PLT RKHQLRVHCAEALGTPI
Sbjct: 301  KTERVILAQNVGLEASQEAITEYRVLGPMINGCSWIELRPLTSRKHQLRVHCAEALGTPI 360

Query: 1087 VGDYKYGWYIHKRWQQIRQRDVDPDTGRRFLLKLHPHLNVNRGTVLAKVPLLHLHCRELA 1266
            VGDYKYGW++H+RW+Q+ + D++P TG+ + L+    L+V +G+VL+KVPLLHLHCREL 
Sbjct: 361  VGDYKYGWFVHRRWKQMPRVDIEPTTGKPYKLRRPEGLDVQKGSVLSKVPLLHLHCRELV 420

Query: 1267 IPNVAKKLGLIDSNCES-----AYKKNTLRFVAPLPTHMAMSWNVMASCL 1401
            +PN+AK L +++ N E+     + K + LRFVA +P HM +SWN+M+S L
Sbjct: 421  LPNIAKFLPVLNKNTETLPPALSMKPDLLRFVATMPKHMKISWNLMSSYL 470


>ref|XP_004300876.1| PREDICTED: RNA pseudourine synthase 3, mitochondrial-like [Fragaria
            vesca subsp. vesca]
          Length = 469

 Score =  405 bits (1042), Expect = e-110
 Identities = 210/394 (53%), Positives = 284/394 (72%), Gaps = 9/394 (2%)
 Frame = +1

Query: 247  STITAFKWVFYWCPDLPLPTIYNLFQTFQVLVETEESRSSGAARKPVGDRDVLSSGCTVY 426
            S +TA  W+ Y+  ++    I + F   + LV+ E   S G   + +   +V+  G  VY
Sbjct: 80   SHVTAVSWLRYYFHEIDDAAIRSHFN--KGLVQMECESSIGKHMRKIRPSEVMEEGARVY 137

Query: 427  LPVSIYYRKIWKKRYEPLPRGTMHPNADEIRYIRSLVLYKDRAIIVLNRPTHLPAQASLG 606
            + VSI   K+  +R++ +P  T++PNADEI Y++ LV YKD AIIVLN+P  LP + ++ 
Sbjct: 138  VAVSIAESKV-SRRFDCIPSETLYPNADEIDYLQRLVKYKDSAIIVLNKPPKLPVKGNVP 196

Query: 607  IHNSMDALAAATLSYEYEEGPKVVHRIDRESSGILVMGRTQESIQCLHDLFREKNIMPSE 786
            +HNSMDALAAA LSY+Y+EGPK+VHR+DRESSGIL+MGRT+ES+  L  L+ + N+  S 
Sbjct: 197  VHNSMDALAAAALSYDYDEGPKLVHRLDRESSGILLMGRTKESLYLLQSLYTDINVGKSS 256

Query: 787  NK---NSVRDEIFEQRYWALVIGCPKEKEGVISAPLSKVALDEKPKERVIIS-RSELDGP 954
             +   ++ R +   QRYWALVIG PKEKEG+I APL+KV LD+   ERVI++ +S L+  
Sbjct: 257  CRAWNDACRAKC--QRYWALVIGSPKEKEGLICAPLTKVLLDDGKTERVILAHQSGLEAS 314

Query: 955  QEAVTQYRVLGPTINGCSWIELCPLTGRKHQLRVHCAEALGTPIVGDYKYGWYIHKRWQQ 1134
            Q A+TQYRVLGPTINGCSWIEL PLT RKHQLRVHCAEALGTPIVGDYKYGW++H+RW+Q
Sbjct: 315  QPALTQYRVLGPTINGCSWIELQPLTSRKHQLRVHCAEALGTPIVGDYKYGWFVHRRWKQ 374

Query: 1135 IRQRDVDPDTGRRFLLKLHPHLNVNRGTVLAKVPLLHLHCRELAIPNVAKKLGLIDSNCE 1314
            +   D++P TG ++ L+    L+V +G+V++KVPLLHLHCREL +PN+AK L L+D   +
Sbjct: 375  MPHIDIEPATGLQYKLRRPAGLDVQKGSVVSKVPLLHLHCRELVLPNIAKFLCLLDQKLD 434

Query: 1315 SAY-----KKNTLRFVAPLPTHMAMSWNVMASCL 1401
            + Y     K + LRFVA +PTHM +SWN+M+S L
Sbjct: 435  NRYTVDSSKPDVLRFVASMPTHMKISWNLMSSYL 468


>gb|AFW61502.1| hypothetical protein ZEAMMB73_778378 [Zea mays]
          Length = 478

 Score =  405 bits (1041), Expect = e-110
 Identities = 208/397 (52%), Positives = 271/397 (68%), Gaps = 14/397 (3%)
 Frame = +1

Query: 253  ITAFKWVFYWCPDLPLPTIYNLFQTFQVLVETEESRSSGAA-------RKPVGDRDVLSS 411
            +TA  WV ++  D+P   +   F    V  E  + + S  +        K +   D +  
Sbjct: 82   VTAVSWVKHYFADVPQEAVQAHFNRRMVFSECYDHKVSADSIRTQKHHLKKIKHNDAMEP 141

Query: 412  GCTVYLPVSIYYRKIWKKRYEPLPRGTMHPNADEIRYIRSLVLYKDRAIIVLNRPTHLPA 591
            G  ++LPVS+    I KKRYE +P  T+HPN DEI Y+R LV+Y+D AI+VLN+P  +P 
Sbjct: 142  GMRIHLPVSVAESDI-KKRYETIPTATLHPNKDEIEYLRRLVIYRDSAILVLNKPPKVPM 200

Query: 592  QASLGIHNSMDALAAATLSYEYEEGPKVVHRIDRESSGILVMGRTQESIQCLHDLFREKN 771
            +  L +HNSMD LAAA LSY  EEGPK+VHR+DRESSG+++MGRT+ES   LH L    N
Sbjct: 201  KGHLPVHNSMDVLAAAALSYGSEEGPKLVHRLDRESSGLILMGRTKESFTRLHWLLTSVN 260

Query: 772  IMPSENKN-SVRDEIFEQRYWALVIGCPKEKEGVISAPLSKVALDEKPKERVIISR-SEL 945
            +  + ++  +   E + Q+YWALVIG PKE+EGVISAP+SKV LD+   ERVI++  S +
Sbjct: 261  LARTSSQTWNKACEAYAQKYWALVIGTPKEREGVISAPISKVLLDDGKAERVILAHPSGI 320

Query: 946  DGPQEAVTQYRVLGPTINGCSWIELCPLTGRKHQLRVHCAEALGTPIVGDYKYGWYIHKR 1125
            DG QEA+T+YRV+GPTINGCSWIEL PLTGRKHQLRVHCAEALGTPIVGDYKYGW++H+ 
Sbjct: 321  DGAQEAITEYRVMGPTINGCSWIELQPLTGRKHQLRVHCAEALGTPIVGDYKYGWFVHQT 380

Query: 1126 WQQIRQRDVDPDTGRRFLLKLHPHLNVNRGTVLAKVPLLHLHCRELAIPNVAKKLGLIDS 1305
            W+Q  Q D +P TG  + L+    L + +G+VL+KVPLLHLHCRE+ IPN+AK L     
Sbjct: 381  WKQNPQPDFEPFTGEPYKLRRPEGLEIQKGSVLSKVPLLHLHCREMVIPNIAKFLSSTGG 440

Query: 1306 NCESA-----YKKNTLRFVAPLPTHMAMSWNVMASCL 1401
              E+       K N LRFVAP+P HM +SWN+M+S L
Sbjct: 441  WHENGTPWAKEKPNLLRFVAPMPPHMKISWNIMSSYL 477


>ref|XP_004158518.1| PREDICTED: RNA pseudourine synthase 3, mitochondrial-like [Cucumis
            sativus]
          Length = 471

 Score =  404 bits (1039), Expect = e-110
 Identities = 203/396 (51%), Positives = 286/396 (72%), Gaps = 13/396 (3%)
 Frame = +1

Query: 253  ITAFKWVFYWCPDLPLPTIYNLFQTFQVLVETEE-----SRSSGAARKPVGDRDVLSSGC 417
            +TA +WV Y+  ++    I + F+   V VE  +      + +    + +   +++ +G 
Sbjct: 78   VTAIRWVKYYFDEIQDSQIQSHFRKGLVQVECPQLGGLDEKGNLKPMRKIRSGEIMETGA 137

Query: 418  TVYLPVSIYYRKIWKKRYEPLPRGTMHPNADEIRYIRSLVLYKDRAIIVLNRPTHLPAQA 597
             ++LPVS+   K+  +R++ +P GT++PNADEI+Y++ LV YKD AIIVLN+P  LP + 
Sbjct: 138  RIHLPVSVAEMKV-ARRFDTIPSGTLYPNADEIKYLQRLVKYKDSAIIVLNKPPKLPVKG 196

Query: 598  SLGIHNSMDALAAATLSYEYEEGPKVVHRIDRESSGILVMGRTQESIQCLHDLFREKNIM 777
            +L +HNSMDALA A LSY+Y++GPK+VHR+DRESSGIL+MGRT+ES+  L  LF   NI 
Sbjct: 197  TLPVHNSMDALADAALSYDYDDGPKLVHRLDRESSGILLMGRTKESVDHLQWLF--SNIR 254

Query: 778  PSENKNSVRDEIFE---QRYWALVIGCPKEKEGVISAPLSKVALDEKPKERVIIS-RSEL 945
             ++      +E      Q+YWALVIGCP+E+EGVISAPLSKV LD+   ERVI++ ++ +
Sbjct: 255  NAKFTCKAWEEACNATYQKYWALVIGCPREREGVISAPLSKVLLDDGKTERVILANKASI 314

Query: 946  DGPQEAVTQYRVLGPTINGCSWIELCPLTGRKHQLRVHCAEALGTPIVGDYKYGWYIHKR 1125
            +  QEA+T+YRVLGPTINGCSWIELCP T RKHQLR+HCAEALGTPIVGDYKYGW++H+R
Sbjct: 315  EASQEAITEYRVLGPTINGCSWIELCPRTSRKHQLRIHCAEALGTPIVGDYKYGWFVHRR 374

Query: 1126 WQQIRQRDVDPDTGRRFLLKLHPHLNVNRGTVLAKVPLLHLHCRELAIPNVAKKLGLI-- 1299
            W+Q+ + DV+P +GR + L+    L+V +G+VL+KVPLLHLHCREL +PN+AK L +   
Sbjct: 375  WKQMPRVDVEPISGRPYKLRRPEGLDVQKGSVLSKVPLLHLHCRELVLPNIAKFLNVFYG 434

Query: 1300 --DSNCESAYKKNTLRFVAPLPTHMAMSWNVMASCL 1401
               +   S++  + LRFVA +P+HM +SWN+M+S L
Sbjct: 435  KGPNRPVSSFDSDLLRFVARMPSHMRISWNLMSSYL 470


>ref|XP_006601250.1| PREDICTED: RNA pseudouridine synthase 3, mitochondrial-like isoform
            X1 [Glycine max]
          Length = 476

 Score =  404 bits (1038), Expect = e-110
 Identities = 210/422 (49%), Positives = 292/422 (69%), Gaps = 11/422 (2%)
 Frame = +1

Query: 169  QYFALPRVPHSHYSETTTPLAAKTYRSTITAFKWVFYWCPDLPLPTIYNLFQTFQVLVET 348
            Q  +LP  P  H     + ++    R  +TA  W+ Y+        I + F+   V +E 
Sbjct: 56   QLLSLPPFP-GHPLPDKSSISGSRQRDYVTAVNWIKYYFKGTWGSVIESHFREGLVQMEA 114

Query: 349  EESRSSGAAR----KPVGDRDVLSSGCTVYLPVSIYYRKIWKKRYEPLPRGTMHPNADEI 516
            ++S +    +    + +   +V+  G  V++PVSI   +I  KRY+ +P GT++PNADEI
Sbjct: 115  DDSSTQKEEQMKPMRKIRPNEVMKRGARVHVPVSICETRI-SKRYDAIPSGTLYPNADEI 173

Query: 517  RYIRSLVLYKDRAIIVLNRPTHLPAQASLGIHNSMDALAAATLSYEYEEGPKVVHRIDRE 696
            +Y++ LV+YKD AIIVLN+P  LP + SL +HNSMDALAAA LSY+Y+EGPK+VHR+DRE
Sbjct: 174  KYLQRLVIYKDSAIIVLNKPPKLPVKGSLPVHNSMDALAAAALSYDYDEGPKLVHRLDRE 233

Query: 697  SSGILVMGRTQESIQCLHDLFREKNIMPSENKN-SVRDEIFEQRYWALVIGCPKEKEGVI 873
            SSGIL++GRT++S+  L  LF   N   S  K+ +   E   QRYWALVIG PKEKEG+I
Sbjct: 234  SSGILLLGRTKDSVSHLQWLFSNINNAKSSCKDWNEACEATYQRYWALVIGTPKEKEGII 293

Query: 874  SAPLSKVALDEKPKERVIISR-SELDGPQEAVTQYRVLGPTINGCSWIELCPLTGRKHQL 1050
             APLSKV L++   ER+I++  S ++  QEAVT+YRVLGP INGCSW+EL PLT RKHQL
Sbjct: 294  HAPLSKVLLNDGKTERIILAHHSSVEPRQEAVTEYRVLGPQINGCSWVELRPLTYRKHQL 353

Query: 1051 RVHCAEALGTPIVGDYKYGWYIHKRWQQIRQRDVDPDTGRRFLLKLHPHLNVNRGTVLAK 1230
            RVHCAEALGTPIVGDYKYGW++H RW+Q+ + D++P TG+ + L+    L+V +G+VL+K
Sbjct: 354  RVHCAEALGTPIVGDYKYGWFVHSRWKQMPRVDIEPTTGKPYKLRRPEGLDVQKGSVLSK 413

Query: 1231 VPLLHLHCRELAIPNVAKKLGLIDSNCES-----AYKKNTLRFVAPLPTHMAMSWNVMAS 1395
            VPLLHLHCREL +PN+ K + +++++ E        + + LRFVA +P+HM +SWN+M+S
Sbjct: 414  VPLLHLHCRELVLPNIVKFMHVLNNSSEELRTSLREQPDVLRFVATMPSHMRISWNLMSS 473

Query: 1396 CL 1401
             L
Sbjct: 474  YL 475


>ref|XP_004138653.1| PREDICTED: RNA pseudourine synthase 3, mitochondrial-like [Cucumis
            sativus]
          Length = 471

 Score =  404 bits (1038), Expect = e-110
 Identities = 202/396 (51%), Positives = 286/396 (72%), Gaps = 13/396 (3%)
 Frame = +1

Query: 253  ITAFKWVFYWCPDLPLPTIYNLFQTFQVLVETEE-----SRSSGAARKPVGDRDVLSSGC 417
            +TA +WV Y+  ++    I + F+   V VE  +      + +    + +   +++ +G 
Sbjct: 78   VTAIRWVKYYFDEIQDSQIQSHFRKGLVQVECPQLGGLDEKGNLKPMRKIRSGEIMETGA 137

Query: 418  TVYLPVSIYYRKIWKKRYEPLPRGTMHPNADEIRYIRSLVLYKDRAIIVLNRPTHLPAQA 597
             ++LPVS+   K+  +R++ +P GT++PNADEI+Y++ LV YKD AIIVLN+P  LP + 
Sbjct: 138  RIHLPVSVAEMKV-ARRFDTIPSGTLYPNADEIKYLQRLVKYKDSAIIVLNKPPKLPVKG 196

Query: 598  SLGIHNSMDALAAATLSYEYEEGPKVVHRIDRESSGILVMGRTQESIQCLHDLFREKNIM 777
            +L +HNSMDALA A LSY+Y++GPK+VHR+DRESSGIL+MGRT+ES+  L  LF   NI 
Sbjct: 197  TLPVHNSMDALADAALSYDYDDGPKLVHRLDRESSGILLMGRTKESVDHLQWLF--SNIR 254

Query: 778  PSENKNSVRDEIFE---QRYWALVIGCPKEKEGVISAPLSKVALDEKPKERVIIS-RSEL 945
             ++      +E      Q+YWALVIGCP+E+EGVISAPLSKV LD+   ERV+++ ++ +
Sbjct: 255  NAKFTCKAWEEACNATYQKYWALVIGCPREREGVISAPLSKVLLDDGKTERVVLANKASI 314

Query: 946  DGPQEAVTQYRVLGPTINGCSWIELCPLTGRKHQLRVHCAEALGTPIVGDYKYGWYIHKR 1125
            +  QEA+T+YRVLGPTINGCSWIELCP T RKHQLR+HCAEALGTPIVGDYKYGW++H+R
Sbjct: 315  EASQEAITEYRVLGPTINGCSWIELCPRTSRKHQLRIHCAEALGTPIVGDYKYGWFVHRR 374

Query: 1126 WQQIRQRDVDPDTGRRFLLKLHPHLNVNRGTVLAKVPLLHLHCRELAIPNVAKKLGLI-- 1299
            W+Q+ + DV+P +GR + L+    L+V +G+VL+KVPLLHLHCREL +PN+AK L +   
Sbjct: 375  WKQMPRVDVEPISGRPYKLRRPEGLDVQKGSVLSKVPLLHLHCRELVLPNIAKFLNVFYG 434

Query: 1300 --DSNCESAYKKNTLRFVAPLPTHMAMSWNVMASCL 1401
               +   S++  + LRFVA +P+HM +SWN+M+S L
Sbjct: 435  KGPNRPVSSFDSDLLRFVARMPSHMRISWNLMSSYL 470


>emb|CBI18448.3| unnamed protein product [Vitis vinifera]
          Length = 481

 Score =  400 bits (1029), Expect = e-109
 Identities = 206/403 (51%), Positives = 284/403 (70%), Gaps = 20/403 (4%)
 Frame = +1

Query: 253  ITAFKWVFYWCPDLPLPTIYNLFQTFQVLVETEESRSSGAAR-------KPVGDRDVLSS 411
            +TA  W+ Y+  ++P   + + F    V +E      S   +       + +   +V+ +
Sbjct: 81   VTAISWIKYYFDEIPGSVVQSHFNKGLVHMERSNLDDSSLEKEGQIKPLRKIKPNEVMEA 140

Query: 412  GCTVYLPVSIYYRKIWKKRYEPLPRGTMHPNADEIRYIRSLVLYK--DRAIIVLNRPTHL 585
            G  +Y+PVS+   +I  KR++ +P GT+HPNADEI Y++ L L K  D AI+VLN+P  +
Sbjct: 141  GTRIYVPVSVAEARI-SKRFDTIPSGTLHPNADEIEYLQRLWLLKFQDPAILVLNKPPKV 199

Query: 586  PAQASLGIHNSMDALAAATLSYEYEEGPKVVHRIDRESSGILVMGRTQESIQCLHDLFRE 765
            P + +L +HNSMDALAAA L+++YEEGPK+VHR+DRESSG+L+MGRT+ES+  LH LF +
Sbjct: 200  PLKGNLPVHNSMDALAAAALTFDYEEGPKLVHRLDRESSGLLLMGRTKESVAHLHWLFSD 259

Query: 766  KNIMPSENKNSVRDEIFE---QRYWALVIGCPKEKEGVISAPLSKVALDEKPKERVIIS- 933
             N   S +K    D+  E   QRYWALVIG PK+KEGVI APLSKV LD+   ERVI++ 
Sbjct: 260  INKAKSLSK--AWDDACEATCQRYWALVIGSPKQKEGVIHAPLSKVLLDDGKTERVILAN 317

Query: 934  RSELDGPQEAVTQYRVLGPTINGCSWIELCPLTGRKHQLRVHCAEALGTPIVGDYKYGWY 1113
            +S L+  QEA+T+YRVLGP INGCSWIELCP T RKHQLRVHCAEALGTPIVGDYKYGW+
Sbjct: 318  QSGLEASQEAITEYRVLGPMINGCSWIELCPRTSRKHQLRVHCAEALGTPIVGDYKYGWF 377

Query: 1114 IHKRWQQIRQRDVDPDTGRRFLLKLHPHLNVNRGTVLAKVPLLHLHCRELAIPNVAKKLG 1293
            +H+RW+Q+ + D++P TG+ + ++    L+V +G+VL+KVPLLHLHCREL +PN+AK L 
Sbjct: 378  VHRRWKQMPRVDLEPTTGKPYKMRRPEGLDVQKGSVLSKVPLLHLHCRELILPNIAKFLP 437

Query: 1294 LIDSNCES-------AYKKNTLRFVAPLPTHMAMSWNVMASCL 1401
            ++D   ++       + K + LRFVA +P HM +SWN+M+S L
Sbjct: 438  ILDPKPKNQNQYPKLSLKPDILRFVASMPNHMKISWNLMSSYL 480


>ref|XP_006385075.1| hypothetical protein POPTR_0004s23670g [Populus trichocarpa]
            gi|550341843|gb|ERP62872.1| hypothetical protein
            POPTR_0004s23670g [Populus trichocarpa]
          Length = 462

 Score =  400 bits (1028), Expect = e-109
 Identities = 204/398 (51%), Positives = 283/398 (71%), Gaps = 15/398 (3%)
 Frame = +1

Query: 253  ITAFKWVFYWCPDLPLPTIYNLFQTFQVLVETEESRSS------GAARKPVGDRDVLSSG 414
            +TA  WV Y+  ++    I + F    V +E   S  S      G   + +   DV+  G
Sbjct: 67   VTAISWVKYYFDEIQDSVIQSHFNKSLVQIECPSSSDSVEMEGLGKPMRKIKPSDVMEVG 126

Query: 415  CTVYLPVSIYYRKIWKKRYEPLPRGTMHPNADEIRYIRSLVLYKDRAIIVLNRPTHLPAQ 594
              +++PVS+    I  KR++ +P GT++PNADEI Y++ LV YKD A++VLN+P  +P +
Sbjct: 127  ARIHIPVSVAETAI-SKRFDTIPSGTLYPNADEIEYLQRLVKYKDSALLVLNKPPKVPVK 185

Query: 595  ASLGIHNSMDALAAATLSYEYEEGPKVVHRIDRESSGILVMGRTQESIQCLHDLFREKNI 774
             ++ IHNSMDALAAA LSY Y+EGPK+VHR+DRESSG+L+MGRT+ESI  L  LF   N 
Sbjct: 186  GNMPIHNSMDALAAAALSYGYDEGPKLVHRLDRESSGLLLMGRTKESIAHLQLLFSYIN- 244

Query: 775  MPSENKNSVRDEIFE---QRYWALVIGCPKEKEGVISAPLSKVALDEKPKERVIISR-SE 942
              +++K    ++  E   QRYWALVIG PK+KEG+ISA LSKV LD+   ERV++++ S 
Sbjct: 245  -KAQSKCHAWNDACEATYQRYWALVIGSPKDKEGLISARLSKVLLDDGKTERVVLAQHSS 303

Query: 943  LDGPQEAVTQYRVLGPTINGCSWIELCPLTGRKHQLRVHCAEALGTPIVGDYKYGWYIHK 1122
            L+  ++AVT+YRVLGPTINGCSWIEL PLT RKHQLRVHCAEALGTPIVGDYKYGW++H+
Sbjct: 304  LEPSRDAVTEYRVLGPTINGCSWIELRPLTSRKHQLRVHCAEALGTPIVGDYKYGWFVHR 363

Query: 1123 RWQQIRQRDVDPDTGRRFLLKLHPHLNVNRGTVLAKVPLLHLHCRELAIPNVAKKLGLID 1302
            RW+Q+ + D++P +G+ + L+    +++ +G+VLAKVPLLHLHCREL +PN+AK L ++D
Sbjct: 364  RWKQMPRVDIEPSSGKPYKLRWPEGVDIQKGSVLAKVPLLHLHCRELVLPNIAKFLDVLD 423

Query: 1303 SNCESAY-----KKNTLRFVAPLPTHMAMSWNVMASCL 1401
               E+ +     + + LRFVA +P+HM +SWN+M+S L
Sbjct: 424  GKSENVHPALSTRPDLLRFVASMPSHMKISWNLMSSFL 461


>ref|XP_004243668.1| PREDICTED: RNA pseudourine synthase 3, mitochondrial-like [Solanum
            lycopersicum]
          Length = 475

 Score =  400 bits (1027), Expect = e-108
 Identities = 216/439 (49%), Positives = 293/439 (66%), Gaps = 12/439 (2%)
 Frame = +1

Query: 121  TNHEYHSQMRRKRVAP-QYFALPRVPHSHYSETTTPLAAKTYRSTITAFKWVFYWCPDLP 297
            +N+  H   ++  V P Q  +LP  P                   +TA  W+ Y+  ++P
Sbjct: 38   SNNITHLGRQKDGVKPSQLLSLPPFPGCPLPGKKVATGPDQPSCHVTAISWIKYYFDEIP 97

Query: 298  LPTIYNLFQTFQVLVETEESRSS--GAAR--KPVGDRDVLSSGCTVYLPVSIYYRKIWKK 465
               I + F    V +E  E  +S  G  R  + +   +V+  G  +++P+S+   +I  K
Sbjct: 98   GSVIQSHFNKGLVQLELNELFTSKEGQTRLLRKIKHSEVMEVGARIHVPISVAETRI-SK 156

Query: 466  RYEPLPRGTMHPNADEIRYIRSLVLYKDRAIIVLNRPTHLPAQASLGIHNSMDALAAATL 645
            RY+ +P GT++PNADEI Y++ LV YKD AI+VLN+P  LP + +L +HNSMDALAAA L
Sbjct: 157  RYDVIPSGTLYPNADEIAYLQRLVFYKDPAILVLNKPPKLPVKGNLHVHNSMDALAAAAL 216

Query: 646  SYEYEEGPKVVHRIDRESSGILVMGRTQESIQCLHDLFREKNIMPSENK--NSVRDEIFE 819
            SYEY+EGP++VHR+DRESSG+ +MGRT+ESI  LH LF       S +K  N      + 
Sbjct: 217  SYEYDEGPRLVHRLDRESSGLHLMGRTEESISHLHLLFSNTKRSKSLSKAWNDACGSTY- 275

Query: 820  QRYWALVIGCPKEKEGVISAPLSKVALDEKPKERVIISR-SELDGPQEAVTQYRVLGPTI 996
            QRYWALVIG PK KEGVISAPL+KV LD+   ERV++++ S L+   EAVT+YR+LGP I
Sbjct: 276  QRYWALVIGSPKVKEGVISAPLTKVLLDDGRTERVMLAQQSGLEASDEAVTEYRLLGPMI 335

Query: 997  NGCSWIELCPLTGRKHQLRVHCAEALGTPIVGDYKYGWYIHKRWQQIRQRDVDPDTGRRF 1176
            NGCSWIEL P T RKHQLRVHCAEALGTPIVGDYKYGW++H++W+Q+ + DV+P TG+ +
Sbjct: 336  NGCSWIELRPHTSRKHQLRVHCAEALGTPIVGDYKYGWFVHRKWKQMPRVDVEPITGKPY 395

Query: 1177 LLKLHPHLNVNRGTVLAKVPLLHLHCRELAIPNVAKKLGL----IDSNCESAYKKNTLRF 1344
             LK    L+V +G+VL+KVPLLHLHCREL +PN+AK + L       N + + K + LRF
Sbjct: 396  RLKRPEGLDVQKGSVLSKVPLLHLHCRELVLPNIAKFIELHSRKTRKNTDYSSKPDLLRF 455

Query: 1345 VAPLPTHMAMSWNVMASCL 1401
            VAP+P+ M +SW +M+SCL
Sbjct: 456  VAPMPSPMKISWKLMSSCL 474


>ref|XP_006353749.1| PREDICTED: RNA pseudouridine synthase 3, mitochondrial-like isoform
            X1 [Solanum tuberosum] gi|565374397|ref|XP_006353750.1|
            PREDICTED: RNA pseudouridine synthase 3,
            mitochondrial-like isoform X2 [Solanum tuberosum]
            gi|565374399|ref|XP_006353751.1| PREDICTED: RNA
            pseudouridine synthase 3, mitochondrial-like isoform X3
            [Solanum tuberosum]
          Length = 475

 Score =  399 bits (1026), Expect = e-108
 Identities = 207/394 (52%), Positives = 280/394 (71%), Gaps = 11/394 (2%)
 Frame = +1

Query: 253  ITAFKWVFYWCPDLPLPTIYNLFQTFQVLVETEESRSS--GAAR--KPVGDRDVLSSGCT 420
            +TA  W+ Y+  ++P   I   F    V +E  E  +S  G  R  + +   +V+  G  
Sbjct: 83   VTAISWIKYYFDEIPGSVIQTHFNKGLVQLEFNELFTSKEGQTRLLRKIKHSEVMEVGAR 142

Query: 421  VYLPVSIYYRKIWKKRYEPLPRGTMHPNADEIRYIRSLVLYKDRAIIVLNRPTHLPAQAS 600
            +++P+S+   +I  KRY+ +P GT++PNADEI Y++ LV YKD AI+VLN+P  LP + +
Sbjct: 143  IHVPISVAETRI-SKRYDVIPSGTLYPNADEIAYLQRLVFYKDPAILVLNKPPKLPLKGN 201

Query: 601  LGIHNSMDALAAATLSYEYEEGPKVVHRIDRESSGILVMGRTQESIQCLHDLFREKNIMP 780
            L +HNSMDALAAA LSYEY+EGP++VHR+DRESSG+ +MGRT+ESI  LH LF       
Sbjct: 202  LPVHNSMDALAAAALSYEYDEGPRLVHRLDRESSGLHLMGRTEESISHLHLLFSNTKKSK 261

Query: 781  SENK--NSVRDEIFEQRYWALVIGCPKEKEGVISAPLSKVALDEKPKERVIISR-SELDG 951
            S +K  N      + QRYWALVIG PKEKEGVISAPL+KV LD+   ERV++++ S L+ 
Sbjct: 262  SLSKAWNDACGSTY-QRYWALVIGSPKEKEGVISAPLTKVLLDDGRTERVMLAQQSGLEA 320

Query: 952  PQEAVTQYRVLGPTINGCSWIELCPLTGRKHQLRVHCAEALGTPIVGDYKYGWYIHKRWQ 1131
              EAVT+YR+LGP INGCSWIEL P T RKHQ+RVHCAEALGTPIVGDYKYGW++H++W+
Sbjct: 321  SDEAVTEYRLLGPMINGCSWIELRPHTSRKHQIRVHCAEALGTPIVGDYKYGWFVHRKWK 380

Query: 1132 QIRQRDVDPDTGRRFLLKLHPHLNVNRGTVLAKVPLLHLHCRELAIPNVAKKLGL----I 1299
            Q+ + DV+P TG+ + LK    L+V +G+VL+KVPLLHLHCREL +PN+AK + L     
Sbjct: 381  QMPRVDVEPTTGKPYRLKRPEGLDVQKGSVLSKVPLLHLHCRELVLPNIAKFIELHSRKT 440

Query: 1300 DSNCESAYKKNTLRFVAPLPTHMAMSWNVMASCL 1401
              + + + K + LRFVAP+P+ M +SW +M+SCL
Sbjct: 441  KKHSDYSSKPDLLRFVAPMPSPMKISWKLMSSCL 474


>ref|XP_004515176.1| PREDICTED: RNA pseudourine synthase 3, mitochondrial-like isoform X1
            [Cicer arietinum]
          Length = 479

 Score =  397 bits (1019), Expect = e-108
 Identities = 212/427 (49%), Positives = 291/427 (68%), Gaps = 16/427 (3%)
 Frame = +1

Query: 169  QYFALPRVP-HSHYSETTTPLAAKTYRSTITAFKWVFYWCPDLPLPTIYNLFQTFQV--- 336
            Q  +LP  P H    + +T    K  R  +TA  W+ Y+        I + F+   V   
Sbjct: 56   QLLSLPPFPCHPLPGKNSTSAPGK--RDHVTAVNWIKYYFKGTSGSVIESHFREGLVQME 113

Query: 337  -LVETEESRSSGAARKP---VGDRDVLSSGCTVYLPVSIYYRKIWKKRYEPLPRGTMHPN 504
             L+  +  +      KP   +   +V+  G  V++ VS+   KI  KR++P+P GT+ PN
Sbjct: 114  DLIVDDSFKQKKELMKPMRKIRPNEVMKPGARVHVSVSMAETKI-SKRFDPIPSGTLCPN 172

Query: 505  ADEIRYIRSLVLYKDRAIIVLNRPTHLPAQASLGIHNSMDALAAATLSYEYEEGPKVVHR 684
            ADEI+Y++ LV+YKD AII+LN+P  LP + +L +HNSMDALAAA LSY+Y++GPK+VHR
Sbjct: 173  ADEIKYLQRLVIYKDSAIIMLNKPPKLPVKGNLPVHNSMDALAAAALSYDYDDGPKLVHR 232

Query: 685  IDRESSGILVMGRTQESIQCLHDLFREKNIMPSENK--NSVRDEIFEQRYWALVIGCPKE 858
            +DRESSGIL++GRT++S+  L  LF   N   S  K  N   +  + QRYWALVIG PKE
Sbjct: 233  LDRESSGILLLGRTKDSVSHLQWLFSNINNTKSSCKAWNDACESTY-QRYWALVIGTPKE 291

Query: 859  KEGVISAPLSKVALDEKPKERVIISR-SELDGPQEAVTQYRVLGPTINGCSWIELCPLTG 1035
            KEG+I APLSKV L++   ERVI++  S ++  QEAVT+YRVLGP INGCSW+EL PLT 
Sbjct: 292  KEGIIHAPLSKVLLNDGKTERVILAHESSIEPHQEAVTEYRVLGPKINGCSWVELRPLTY 351

Query: 1036 RKHQLRVHCAEALGTPIVGDYKYGWYIHKRWQQIRQRDVDPDTGRRFLLKLHPHLNVNRG 1215
            RKHQLRVHCAEALGTPIVGDYKYGW++H RW+Q+ + D++P TG+ + L+    L+V +G
Sbjct: 352  RKHQLRVHCAEALGTPIVGDYKYGWFVHSRWKQMPRVDIEPTTGKPYKLRRPEGLDVQKG 411

Query: 1216 TVLAKVPLLHLHCRELAIPNVAKKLGLIDSNCES-----AYKKNTLRFVAPLPTHMAMSW 1380
            +VL+KVPLLHLHCRELA+PN+AK L +++ + +      + + + LRFVA +P HM +SW
Sbjct: 412  SVLSKVPLLHLHCRELALPNIAKFLNVLEKSSQQLDPSLSLQPDVLRFVATMPNHMRISW 471

Query: 1381 NVMASCL 1401
            N+M+S L
Sbjct: 472  NLMSSYL 478


>dbj|BAD09700.1| putative ribosomal large subunit pseudouridine synthase C protein
            [Oryza sativa Japonica Group] gi|42409169|dbj|BAD10435.1|
            putative ribosomal large subunit pseudouridine synthase C
            protein [Oryza sativa Japonica Group]
          Length = 340

 Score =  397 bits (1019), Expect = e-108
 Identities = 200/343 (58%), Positives = 254/343 (74%), Gaps = 10/343 (2%)
 Frame = +1

Query: 403  LSSGCTVYLPVSIYYRKIWKKRYEPLPRGTMHPNADEIRYIRSLVLYKDRAIIVLNRPTH 582
            +  G  ++LPVS+   +I KKRYE +P  T+HPN DEI Y+R LV++KD AI+VLN+P  
Sbjct: 1    MEPGMRIHLPVSVAEGEI-KKRYETIPTATLHPNKDEIEYLRRLVIHKDSAILVLNKPPK 59

Query: 583  LPAQASLGIHNSMDALAAATLSYEYEEGPKVVHRIDRESSGILVMGRTQESIQCLHDLFR 762
            +P + +L +HNSMD LAAA LSY  EEGPK+VHR+DRESSG+L+ GRT+ES   LH LF 
Sbjct: 60   VPMKGNLPVHNSMDVLAAAALSYGNEEGPKLVHRLDRESSGLLLFGRTKESFTRLHWLFT 119

Query: 763  EKNIMPSENKN-SVRDEIFEQRYWALVIGCPKEKEGVISAPLSKVALDEKPKERVIISR- 936
              N+  + ++  +   E + QRYWALVIG PKE+EG+ISAPLSKV LD+   ERVI++  
Sbjct: 120  SVNLAKTNSQVWNAACEAYMQRYWALVIGTPKEREGIISAPLSKVLLDDGKAERVILAHP 179

Query: 937  SELDGPQEAVTQYRVLGPTINGCSWIELCPLTGRKHQLRVHCAEALGTPIVGDYKYGWYI 1116
            S +DG QEAVT YRV+GPTI+GCSWIEL PLTGRKHQLRVHCAEALGTPIVGDYKYGW++
Sbjct: 180  SGIDGAQEAVTAYRVMGPTIHGCSWIELRPLTGRKHQLRVHCAEALGTPIVGDYKYGWFV 239

Query: 1117 HKRWQQIRQRDVDPDTGRRFLLKLHPHLNVNRGTVLAKVPLLHLHCRELAIPNVAKKLGL 1296
            H+RW+Q  Q D +P TG  + L+    L + +G+VL+KVPLLHLHCRE+ IPN+AK    
Sbjct: 240  HQRWKQNPQPDFEPFTGEPYKLRRPEGLEIQKGSVLSKVPLLHLHCREMVIPNIAK---F 296

Query: 1297 IDSNCE--------SAYKKNTLRFVAPLPTHMAMSWNVMASCL 1401
            + SN E        S  K N LRF+AP+P HM +SWN+M+S L
Sbjct: 297  LSSNGEWHENGAPWSKEKPNLLRFIAPMPAHMKISWNIMSSYL 339


>gb|ESW32964.1| hypothetical protein PHAVU_001G032500g [Phaseolus vulgaris]
          Length = 480

 Score =  396 bits (1017), Expect = e-107
 Identities = 209/426 (49%), Positives = 290/426 (68%), Gaps = 15/426 (3%)
 Frame = +1

Query: 169  QYFALPRVPHSHYSETTTPLAAKTYRSTITAFKWVFYWCPDLPLPTIYNLFQTFQVLVET 348
            Q  +LP  P  H     +  +    R  +TA  W+ Y+        I + F+   V +E 
Sbjct: 57   QLLSLPPFP-GHPLPAKSSTSDPGQRDYVTAVNWIKYYFKGAWGSVIESHFREGLVQMED 115

Query: 349  EESRSSGAAR-------KPVGDRDVLSSGCTVYLPVSIYYRKIWKKRYEPLPRGTMHPNA 507
            E +  S   +       + +   +V+  G  V++PVSI   ++  KRY+ +P GT++PNA
Sbjct: 116  EVTADSYTQKENLMKPMRKIRPNEVMKHGARVHVPVSIAETRV-SKRYDAIPCGTLYPNA 174

Query: 508  DEIRYIRSLVLYKDRAIIVLNRPTHLPAQASLGIHNSMDALAAATLSYEYEEGPKVVHRI 687
            DEI+Y++ LV+YKD AIIVLN+P  LP + +L +HNSMDALAAA LSY+Y+EGPK+VHR+
Sbjct: 175  DEIKYLQRLVIYKDSAIIVLNKPPKLPVKGNLPVHNSMDALAAAALSYDYDEGPKLVHRL 234

Query: 688  DRESSGILVMGRTQESIQCLHDLFREKNIMPSENK--NSVRDEIFEQRYWALVIGCPKEK 861
            DRE+SGIL++GRT++S   L  LF   N   S  K  N   +  + QRYWALVIG PKEK
Sbjct: 235  DRETSGILLLGRTKDSASHLQWLFTNINNAKSSCKAWNDACEATY-QRYWALVIGTPKEK 293

Query: 862  EGVISAPLSKVALDEKPKERVIISR-SELDGPQEAVTQYRVLGPTINGCSWIELCPLTGR 1038
            EG+I APLSKV L++   ER+I++  S ++  QEAVT++RVLGP INGCSW+EL PLT R
Sbjct: 294  EGIIHAPLSKVLLNDGKTERIILANHSSVEPRQEAVTEFRVLGPKINGCSWVELRPLTYR 353

Query: 1039 KHQLRVHCAEALGTPIVGDYKYGWYIHKRWQQIRQRDVDPDTGRRFLLKLHPHLNVNRGT 1218
            KHQLRVHCAEALGTPIVGDYKYGW++H RW+Q+ + D++P TG+ + L+    L+V +G+
Sbjct: 354  KHQLRVHCAEALGTPIVGDYKYGWFVHSRWKQMPRIDIEPTTGKPYKLRRPEGLDVQKGS 413

Query: 1219 VLAKVPLLHLHCRELAIPNVAKKLGLIDSNCESAY-----KKNTLRFVAPLPTHMAMSWN 1383
            VL+KVPLLHLHCREL +PN+AK L +++++ E  +     +   LRFVA +P+HM +SWN
Sbjct: 414  VLSKVPLLHLHCRELVLPNIAKFLHVLNNSSEELHSSLNQQPEVLRFVATMPSHMRISWN 473

Query: 1384 VMASCL 1401
            +M+S L
Sbjct: 474  LMSSYL 479


>ref|XP_006436406.1| hypothetical protein CICLE_v10031422mg [Citrus clementina]
            gi|557538602|gb|ESR49646.1| hypothetical protein
            CICLE_v10031422mg [Citrus clementina]
          Length = 471

 Score =  394 bits (1013), Expect = e-107
 Identities = 203/400 (50%), Positives = 280/400 (70%), Gaps = 17/400 (4%)
 Frame = +1

Query: 253  ITAFKWVFYWCPDLPLPTIYNLFQTFQVLVETEESRSSGAAR------KPVGDRDVLSSG 414
            +TA  WV Y+  ++    I + F    V +E      S   +      + +   +V+  G
Sbjct: 73   VTAVSWVKYYFDEVQDSVIQSHFNKGLVQMECANMGDSFVEQGQMKPIRKIKTNEVMEPG 132

Query: 415  CTVYLPVSIYYRKIWKKRYEPLPRGTMHPNADEIRYIRSLVLYKDRAIIVLNRPTHLPAQ 594
              ++LPVS+   +I  KRY+ +P GT++PNADEI Y+R LV Y+D AI+VLN+P  +P +
Sbjct: 133  ARIFLPVSMVEGRI-SKRYDTIPSGTLNPNADEIDYLRRLVKYRDSAILVLNKPPKVPLK 191

Query: 595  ASLGIHNSMDALAAATLSYEYEEGPKVVHRIDRESSGILVMGRTQESIQCLHDLFREKNI 774
              L +HNSMDALAAA LSY+Y EGPK+VHR+DRESSG+L+MGRT+ES+  L  LF + N 
Sbjct: 192  GHLPVHNSMDALAAAALSYDYNEGPKLVHRLDRESSGLLLMGRTKESVSLLTWLFSDVNK 251

Query: 775  MPSENK--NSVRDEIFEQRYWALVIGCPKEKEGVISAPLSKVALDEKPKERVIISR-SEL 945
              S +K  N   + ++ QRYWALVIG PKEK+G+I APLSKV LD+   ER+I+++ S L
Sbjct: 252  SKSLSKAWNDACEAMY-QRYWALVIGSPKEKQGIIHAPLSKVLLDDGKTERIILAQNSGL 310

Query: 946  DGPQEAVTQYRVLGPTINGCSWIELCPLTGRKHQLRVHCAEALGTPIVGDYKYGWYIHKR 1125
            +  QEAVT+YRVLGP INGCSWIEL PLT RKHQLRVHCAEALGTPIVGDYKYGW++H+R
Sbjct: 311  EASQEAVTEYRVLGPMINGCSWIELRPLTCRKHQLRVHCAEALGTPIVGDYKYGWFVHRR 370

Query: 1126 WQQIRQRDVDPDTGRRFLLKLHPHLNVNRGTVLAKVPLLHLHCRELAIPNVAKKLGLIDS 1305
            W+Q+ + D++P +G+ + L+    L+V +G+VL+KVPLLHLHCREL +PN+AK   +++ 
Sbjct: 371  WKQMPRVDIEPTSGKPYKLRRPDGLDVQKGSVLSKVPLLHLHCRELVLPNIAKFRNVLNQ 430

Query: 1306 NCESAYK--------KNTLRFVAPLPTHMAMSWNVMASCL 1401
              ++ +          + LRFVA +P+HM +SWN+M+S L
Sbjct: 431  KSDNLFPTLSSKPDGPDLLRFVASMPSHMKISWNLMSSYL 470