BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ephedra25_contig00019053
         (478 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAY78476.1| RNA polymerase IV second largest subunit [Ginkgo ...   254   1e-65
gb|AFW59623.1| putative DNA-directed RNA polymerase subunit fami...   209   3e-52
ref|XP_002468227.1| hypothetical protein SORBIDRAFT_01g042100 [S...   209   3e-52
ref|XP_002445131.1| hypothetical protein SORBIDRAFT_07g004600 [S...   209   4e-52
ref|XP_002447199.1| hypothetical protein SORBIDRAFT_06g030300 [S...   208   7e-52
gb|ADB19859.1| mutant required to maintain repression 7-2/ RNA p...   205   4e-51
ref|NP_001177299.1| required to maintain repression7 [Zea mays] ...   205   4e-51
gb|AAY45706.1| RNA polymerase IV second largest subunit [Zea mays]    205   4e-51
gb|EEE61785.1| hypothetical protein OsJ_16357 [Oryza sativa Japo...   204   1e-50
gb|EEC78111.1| hypothetical protein OsI_17620 [Oryza sativa Indi...   204   1e-50
ref|NP_001054041.1| Os04g0641000 [Oryza sativa Japonica Group] g...   204   1e-50
emb|CAJ86030.1| B0414F07.4 [Oryza sativa Indica Group]                204   1e-50
emb|CAE05960.2| OSJNBa0063C18.1 [Oryza sativa Japonica Group]         204   1e-50
emb|CAD41847.2| OSJNBb0079B02.6 [Oryza sativa Japonica Group]         204   1e-50
gb|EXB86677.1| DNA-directed RNA polymerase D subunit 2a [Morus n...   202   3e-50
gb|AFW57180.1| putative DNA-directed RNA polymerase subunit fami...   202   3e-50
ref|XP_006652896.1| PREDICTED: DNA-directed RNA polymerases IV a...   202   4e-50
ref|XP_006827132.1| hypothetical protein AMTR_s00010p00249150 [A...   202   5e-50
ref|XP_004145500.1| PREDICTED: DNA-directed RNA polymerase D sub...   202   5e-50
ref|XP_004501385.1| PREDICTED: DNA-directed RNA polymerase D sub...   201   6e-50

>gb|AAY78476.1| RNA polymerase IV second largest subunit [Ginkgo biloba]
          Length = 651

 Score =  254 bits (648), Expect = 1e-65
 Identities = 110/150 (73%), Positives = 133/150 (88%)
 Frame = +3

Query: 27  ISDATPFRPITVDYITERLKKCGYEQWGREQMYSGRTGSPMETKIFIGPTFYQRLIHMAE 206
           + DATP+ P+T+ YITE+L +CGY+QWG+EQMY+GRTG  +++KIFIGPT+YQRLIHMAE
Sbjct: 470 VGDATPYGPVTLQYITEQLHRCGYQQWGKEQMYNGRTGCKLQSKIFIGPTYYQRLIHMAE 529

Query: 207 DKIKYRNRGPVHPLTRQPVHDRKRHGGVKFGEMERDCMLAHGATSNLLERLFYLSDFSNM 386
           DK+KYRN GPVHPLTRQPV DRKRHGGVKFGEMERDCMLAHGAT+NLLERLF+LSDFS M
Sbjct: 530 DKMKYRNHGPVHPLTRQPVADRKRHGGVKFGEMERDCMLAHGATANLLERLFFLSDFSTM 589

Query: 387 HICSKCQMVAPVVLESGSRGPHCNFCKTTR 476
           H+C +C+ +A V+L  G RGP+C FCKT +
Sbjct: 590 HVCRECRNMATVILRDGVRGPYCPFCKTAK 619


>gb|AFW59623.1| putative DNA-directed RNA polymerase subunit family protein [Zea
            mays]
          Length = 2163

 Score =  209 bits (532), Expect = 3e-52
 Identities = 98/151 (64%), Positives = 117/151 (77%), Gaps = 5/151 (3%)
 Frame = +3

Query: 36   ATPFRPITVDYITERLKKCGYEQWGREQMYSGRTGSPMETKIFIGPTFYQRLIHMAEDKI 215
            ATPF   +VD I E+L K GY +WG E + +GRTG  M++ +F+GPTFYQRLIHM+EDK+
Sbjct: 1980 ATPFTTASVDVIAEQLHKAGYSRWGAENVLNGRTGERMKSLVFMGPTFYQRLIHMSEDKV 2039

Query: 216  KYRNRGPVHPLTRQPVHDRKRHGGVKFGEMERDCMLAHGATSNLLERLFYLSDFSNMHIC 395
            KYRN GPVHPLTRQPV DRKR GGVKFGEMERDC+LAHG+ +NL ERLF LSDFS MHIC
Sbjct: 2040 KYRNTGPVHPLTRQPVADRKRFGGVKFGEMERDCLLAHGSAANLHERLFMLSDFSQMHIC 2099

Query: 396  SKCQMVAPVVLES-----GSRGPHCNFCKTT 473
              C+ VA VV+ S       RGP+C FCK++
Sbjct: 2100 QTCERVANVVMRSVPGGKKIRGPYCGFCKSS 2130


>ref|XP_002468227.1| hypothetical protein SORBIDRAFT_01g042100 [Sorghum bicolor]
            gi|241922081|gb|EER95225.1| hypothetical protein
            SORBIDRAFT_01g042100 [Sorghum bicolor]
          Length = 1228

 Score =  209 bits (532), Expect = 3e-52
 Identities = 98/151 (64%), Positives = 118/151 (78%), Gaps = 5/151 (3%)
 Frame = +3

Query: 36   ATPFRPITVDYITERLKKCGYEQWGREQMYSGRTGSPMETKIFIGPTFYQRLIHMAEDKI 215
            ATPF   +VD I E+L + GY +WG E + +GRTG  M++ IF+GPTFYQRLIHM+EDK+
Sbjct: 1045 ATPFTTASVDVIAEQLHRAGYSRWGTENVLNGRTGERMQSLIFMGPTFYQRLIHMSEDKV 1104

Query: 216  KYRNRGPVHPLTRQPVHDRKRHGGVKFGEMERDCMLAHGATSNLLERLFYLSDFSNMHIC 395
            K+RN GPVHPLTRQPV DRKR GGVKFGEMERDC+LAHG+ +NL ERLF LSDFS MHIC
Sbjct: 1105 KFRNTGPVHPLTRQPVADRKRFGGVKFGEMERDCLLAHGSAANLHERLFMLSDFSQMHIC 1164

Query: 396  SKCQMVAPVVLESGS-----RGPHCNFCKTT 473
              C+ VA VV+ S S     RGP+C FCK++
Sbjct: 1165 QTCERVANVVMRSVSGGKKIRGPYCGFCKSS 1195


>ref|XP_002445131.1| hypothetical protein SORBIDRAFT_07g004600 [Sorghum bicolor]
            gi|241941481|gb|EES14626.1| hypothetical protein
            SORBIDRAFT_07g004600 [Sorghum bicolor]
          Length = 1251

 Score =  209 bits (531), Expect = 4e-52
 Identities = 98/155 (63%), Positives = 121/155 (78%), Gaps = 6/155 (3%)
 Frame = +3

Query: 24   KISDATPFRPITVDYITERLKKCGYEQWGREQMYSGRTGSPMETKIFIGPTFYQRLIHMA 203
            K+  ATPF   TVD ITE+L K G+ +WG E + +G+TG  M++ +F+GPTFYQRL+HMA
Sbjct: 1063 KVRYATPFTTPTVDVITEQLHKAGFSRWGEESVLNGQTGERMKSLVFMGPTFYQRLVHMA 1122

Query: 204  EDKIKYRNRGPVHPLTRQPVHDRKRHGGVKFGEMERDCMLAHGATSNLLERLFYLSDFSN 383
            EDK+K+RN GPVHP+TRQPV D+KR GGVKFGEMERDCMLAHGA +NL ERLF LSDFS 
Sbjct: 1123 EDKVKFRNTGPVHPVTRQPVEDKKRFGGVKFGEMERDCMLAHGAAANLHERLFTLSDFSQ 1182

Query: 384  MHICSKCQMVAPVVL---ESGSR---GPHCNFCKT 470
            MHIC  CQ VA V++   E GS+   GP+C FC++
Sbjct: 1183 MHICQACQRVANVIMRPAEGGSKKVHGPYCMFCRS 1217


>ref|XP_002447199.1| hypothetical protein SORBIDRAFT_06g030300 [Sorghum bicolor]
            gi|241938382|gb|EES11527.1| hypothetical protein
            SORBIDRAFT_06g030300 [Sorghum bicolor]
          Length = 1239

 Score =  208 bits (529), Expect = 7e-52
 Identities = 97/151 (64%), Positives = 117/151 (77%), Gaps = 5/151 (3%)
 Frame = +3

Query: 36   ATPFRPITVDYITERLKKCGYEQWGREQMYSGRTGSPMETKIFIGPTFYQRLIHMAEDKI 215
            ATPF   +VD I E+L K GY +WG E + +GRTG  M++ +F+GPTFYQRLIHM+EDK+
Sbjct: 1056 ATPFTTASVDVIAEQLHKAGYSRWGAENVLNGRTGERMQSLVFMGPTFYQRLIHMSEDKV 1115

Query: 216  KYRNRGPVHPLTRQPVHDRKRHGGVKFGEMERDCMLAHGATSNLLERLFYLSDFSNMHIC 395
            K+RN GPVHPLTRQPV DRKR GGVKFGEMERDC+LAHG+ +NL ERLF LSDFS MHIC
Sbjct: 1116 KFRNTGPVHPLTRQPVADRKRFGGVKFGEMERDCLLAHGSAANLHERLFMLSDFSQMHIC 1175

Query: 396  SKCQMVAPVVLES-----GSRGPHCNFCKTT 473
              C+ VA VV+ S       RGP+C FCK++
Sbjct: 1176 QTCERVANVVMRSVPGGKKIRGPYCGFCKSS 1206


>gb|ADB19859.1| mutant required to maintain repression 7-2/ RNA polymerase D second
            largest subunit 2-2 [Zea mays]
          Length = 1229

 Score =  205 bits (522), Expect = 4e-51
 Identities = 95/151 (62%), Positives = 117/151 (77%), Gaps = 5/151 (3%)
 Frame = +3

Query: 36   ATPFRPITVDYITERLKKCGYEQWGREQMYSGRTGSPMETKIFIGPTFYQRLIHMAEDKI 215
            ATPF   +VD I E+L + GY +WG E + +GRTG  +++ +F+GPTFYQRLIHM+EDK+
Sbjct: 1046 ATPFTTASVDVIAEQLHRAGYSRWGSENVLNGRTGERVQSLVFMGPTFYQRLIHMSEDKV 1105

Query: 216  KYRNRGPVHPLTRQPVHDRKRHGGVKFGEMERDCMLAHGATSNLLERLFYLSDFSNMHIC 395
            K+RN GPVHPLTRQPV DRKR GGVKFGEMERDC+LAHG+ +NL ERLF LSDFS MHIC
Sbjct: 1106 KFRNTGPVHPLTRQPVADRKRFGGVKFGEMERDCLLAHGSAANLHERLFLLSDFSQMHIC 1165

Query: 396  SKCQMVAPVVLES-----GSRGPHCNFCKTT 473
              C+ VA VV+ S       RGP+C FCK++
Sbjct: 1166 QTCERVANVVMRSVPGGKKIRGPYCGFCKSS 1196


>ref|NP_001177299.1| required to maintain repression7 [Zea mays]
            gi|283443696|gb|ADB19857.1| required to maintain
            repression 7/RNA polymerase D second largest subunit [Zea
            mays] gi|297185477|gb|ADI24118.1| RPD2/E2a [Zea mays]
            gi|414585188|tpg|DAA35759.1| TPA: putative DNA-directed
            RNA polymerase subunit family protein [Zea mays]
          Length = 1229

 Score =  205 bits (522), Expect = 4e-51
 Identities = 95/151 (62%), Positives = 117/151 (77%), Gaps = 5/151 (3%)
 Frame = +3

Query: 36   ATPFRPITVDYITERLKKCGYEQWGREQMYSGRTGSPMETKIFIGPTFYQRLIHMAEDKI 215
            ATPF   +VD I E+L + GY +WG E + +GRTG  +++ +F+GPTFYQRLIHM+EDK+
Sbjct: 1046 ATPFTTASVDVIAEQLHRAGYSRWGSENVLNGRTGERVQSLVFMGPTFYQRLIHMSEDKV 1105

Query: 216  KYRNRGPVHPLTRQPVHDRKRHGGVKFGEMERDCMLAHGATSNLLERLFYLSDFSNMHIC 395
            K+RN GPVHPLTRQPV DRKR GGVKFGEMERDC+LAHG+ +NL ERLF LSDFS MHIC
Sbjct: 1106 KFRNTGPVHPLTRQPVADRKRFGGVKFGEMERDCLLAHGSAANLHERLFLLSDFSQMHIC 1165

Query: 396  SKCQMVAPVVLES-----GSRGPHCNFCKTT 473
              C+ VA VV+ S       RGP+C FCK++
Sbjct: 1166 QTCERVANVVMRSVPGGKKIRGPYCGFCKSS 1196


>gb|AAY45706.1| RNA polymerase IV second largest subunit [Zea mays]
          Length = 1170

 Score =  205 bits (522), Expect = 4e-51
 Identities = 95/151 (62%), Positives = 117/151 (77%), Gaps = 5/151 (3%)
 Frame = +3

Query: 36   ATPFRPITVDYITERLKKCGYEQWGREQMYSGRTGSPMETKIFIGPTFYQRLIHMAEDKI 215
            ATPF   +VD I E+L + GY +WG E + +GRTG  +++ +F+GPTFYQRLIHM+EDK+
Sbjct: 987  ATPFTTASVDVIAEQLHRAGYSRWGSENVLNGRTGERVQSLVFMGPTFYQRLIHMSEDKV 1046

Query: 216  KYRNRGPVHPLTRQPVHDRKRHGGVKFGEMERDCMLAHGATSNLLERLFYLSDFSNMHIC 395
            K+RN GPVHPLTRQPV DRKR GGVKFGEMERDC+LAHG+ +NL ERLF LSDFS MHIC
Sbjct: 1047 KFRNTGPVHPLTRQPVADRKRFGGVKFGEMERDCLLAHGSAANLHERLFLLSDFSQMHIC 1106

Query: 396  SKCQMVAPVVLES-----GSRGPHCNFCKTT 473
              C+ VA VV+ S       RGP+C FCK++
Sbjct: 1107 QTCERVANVVMRSVPGGKKIRGPYCGFCKSS 1137


>gb|EEE61785.1| hypothetical protein OsJ_16357 [Oryza sativa Japonica Group]
          Length = 1185

 Score =  204 bits (518), Expect = 1e-50
 Identities = 94/151 (62%), Positives = 115/151 (76%), Gaps = 5/151 (3%)
 Frame = +3

Query: 36   ATPFRPITVDYITERLKKCGYEQWGREQMYSGRTGSPMETKIFIGPTFYQRLIHMAEDKI 215
            ATPF   + D IT++L K G+ +WG E + +GRTG  M + IF+GPTFYQRLIHMAEDK+
Sbjct: 1002 ATPFTTASFDVITDQLHKAGFSRWGAESVLNGRTGERMHSLIFMGPTFYQRLIHMAEDKV 1061

Query: 216  KYRNRGPVHPLTRQPVHDRKRHGGVKFGEMERDCMLAHGATSNLLERLFYLSDFSNMHIC 395
            K+RN GPVHPLTRQPV DRKR GGVKFGEMERDC+LAHGA +NL ERLF LSDFS MH+C
Sbjct: 1062 KFRNTGPVHPLTRQPVADRKRFGGVKFGEMERDCLLAHGAAANLHERLFMLSDFSQMHVC 1121

Query: 396  SKCQMVAPVVLE-----SGSRGPHCNFCKTT 473
              C+ VA V++         RGP+C FC+++
Sbjct: 1122 QTCERVANVIMRPVPGGKKIRGPYCGFCRSS 1152


>gb|EEC78111.1| hypothetical protein OsI_17620 [Oryza sativa Indica Group]
          Length = 1177

 Score =  204 bits (518), Expect = 1e-50
 Identities = 94/151 (62%), Positives = 115/151 (76%), Gaps = 5/151 (3%)
 Frame = +3

Query: 36   ATPFRPITVDYITERLKKCGYEQWGREQMYSGRTGSPMETKIFIGPTFYQRLIHMAEDKI 215
            ATPF   + D IT++L K G+ +WG E + +GRTG  M + IF+GPTFYQRLIHMAEDK+
Sbjct: 994  ATPFTTASFDVITDQLHKAGFSRWGAESVLNGRTGERMHSLIFMGPTFYQRLIHMAEDKV 1053

Query: 216  KYRNRGPVHPLTRQPVHDRKRHGGVKFGEMERDCMLAHGATSNLLERLFYLSDFSNMHIC 395
            K+RN GPVHPLTRQPV DRKR GGVKFGEMERDC+LAHGA +NL ERLF LSDFS MH+C
Sbjct: 1054 KFRNTGPVHPLTRQPVADRKRFGGVKFGEMERDCLLAHGAAANLHERLFMLSDFSQMHVC 1113

Query: 396  SKCQMVAPVVLE-----SGSRGPHCNFCKTT 473
              C+ VA V++         RGP+C FC+++
Sbjct: 1114 QTCERVANVIMRPVPGGKKIRGPYCGFCRSS 1144


>ref|NP_001054041.1| Os04g0641000 [Oryza sativa Japonica Group]
            gi|113565612|dbj|BAF15955.1| Os04g0641000, partial [Oryza
            sativa Japonica Group]
          Length = 1270

 Score =  204 bits (518), Expect = 1e-50
 Identities = 94/151 (62%), Positives = 115/151 (76%), Gaps = 5/151 (3%)
 Frame = +3

Query: 36   ATPFRPITVDYITERLKKCGYEQWGREQMYSGRTGSPMETKIFIGPTFYQRLIHMAEDKI 215
            ATPF   + D IT++L K G+ +WG E + +GRTG  M + IF+GPTFYQRLIHMAEDK+
Sbjct: 1087 ATPFTTASFDVITDQLHKAGFSRWGAESVLNGRTGERMHSLIFMGPTFYQRLIHMAEDKV 1146

Query: 216  KYRNRGPVHPLTRQPVHDRKRHGGVKFGEMERDCMLAHGATSNLLERLFYLSDFSNMHIC 395
            K+RN GPVHPLTRQPV DRKR GGVKFGEMERDC+LAHGA +NL ERLF LSDFS MH+C
Sbjct: 1147 KFRNTGPVHPLTRQPVADRKRFGGVKFGEMERDCLLAHGAAANLHERLFMLSDFSQMHVC 1206

Query: 396  SKCQMVAPVVLE-----SGSRGPHCNFCKTT 473
              C+ VA V++         RGP+C FC+++
Sbjct: 1207 QTCERVANVIMRPVPGGKKIRGPYCGFCRSS 1237


>emb|CAJ86030.1| B0414F07.4 [Oryza sativa Indica Group]
          Length = 1343

 Score =  204 bits (518), Expect = 1e-50
 Identities = 94/151 (62%), Positives = 115/151 (76%), Gaps = 5/151 (3%)
 Frame = +3

Query: 36   ATPFRPITVDYITERLKKCGYEQWGREQMYSGRTGSPMETKIFIGPTFYQRLIHMAEDKI 215
            ATPF   + D IT++L K G+ +WG E + +GRTG  M + IF+GPTFYQRLIHMAEDK+
Sbjct: 1160 ATPFTTASFDVITDQLHKAGFSRWGAESVLNGRTGERMHSLIFMGPTFYQRLIHMAEDKV 1219

Query: 216  KYRNRGPVHPLTRQPVHDRKRHGGVKFGEMERDCMLAHGATSNLLERLFYLSDFSNMHIC 395
            K+RN GPVHPLTRQPV DRKR GGVKFGEMERDC+LAHGA +NL ERLF LSDFS MH+C
Sbjct: 1220 KFRNTGPVHPLTRQPVADRKRFGGVKFGEMERDCLLAHGAAANLHERLFMLSDFSQMHVC 1279

Query: 396  SKCQMVAPVVLE-----SGSRGPHCNFCKTT 473
              C+ VA V++         RGP+C FC+++
Sbjct: 1280 QTCERVANVIMRPVPGGKKIRGPYCGFCRSS 1310


>emb|CAE05960.2| OSJNBa0063C18.1 [Oryza sativa Japonica Group]
          Length = 1316

 Score =  204 bits (518), Expect = 1e-50
 Identities = 94/151 (62%), Positives = 115/151 (76%), Gaps = 5/151 (3%)
 Frame = +3

Query: 36   ATPFRPITVDYITERLKKCGYEQWGREQMYSGRTGSPMETKIFIGPTFYQRLIHMAEDKI 215
            ATPF   + D IT++L K G+ +WG E + +GRTG  M + IF+GPTFYQRLIHMAEDK+
Sbjct: 1133 ATPFTTASFDVITDQLHKAGFSRWGAESVLNGRTGERMHSLIFMGPTFYQRLIHMAEDKV 1192

Query: 216  KYRNRGPVHPLTRQPVHDRKRHGGVKFGEMERDCMLAHGATSNLLERLFYLSDFSNMHIC 395
            K+RN GPVHPLTRQPV DRKR GGVKFGEMERDC+LAHGA +NL ERLF LSDFS MH+C
Sbjct: 1193 KFRNTGPVHPLTRQPVADRKRFGGVKFGEMERDCLLAHGAAANLHERLFMLSDFSQMHVC 1252

Query: 396  SKCQMVAPVVLE-----SGSRGPHCNFCKTT 473
              C+ VA V++         RGP+C FC+++
Sbjct: 1253 QTCERVANVIMRPVPGGKKIRGPYCGFCRSS 1283


>emb|CAD41847.2| OSJNBb0079B02.6 [Oryza sativa Japonica Group]
          Length = 1343

 Score =  204 bits (518), Expect = 1e-50
 Identities = 94/151 (62%), Positives = 115/151 (76%), Gaps = 5/151 (3%)
 Frame = +3

Query: 36   ATPFRPITVDYITERLKKCGYEQWGREQMYSGRTGSPMETKIFIGPTFYQRLIHMAEDKI 215
            ATPF   + D IT++L K G+ +WG E + +GRTG  M + IF+GPTFYQRLIHMAEDK+
Sbjct: 1160 ATPFTTASFDVITDQLHKAGFSRWGAESVLNGRTGERMHSLIFMGPTFYQRLIHMAEDKV 1219

Query: 216  KYRNRGPVHPLTRQPVHDRKRHGGVKFGEMERDCMLAHGATSNLLERLFYLSDFSNMHIC 395
            K+RN GPVHPLTRQPV DRKR GGVKFGEMERDC+LAHGA +NL ERLF LSDFS MH+C
Sbjct: 1220 KFRNTGPVHPLTRQPVADRKRFGGVKFGEMERDCLLAHGAAANLHERLFMLSDFSQMHVC 1279

Query: 396  SKCQMVAPVVLE-----SGSRGPHCNFCKTT 473
              C+ VA V++         RGP+C FC+++
Sbjct: 1280 QTCERVANVIMRPVPGGKKIRGPYCGFCRSS 1310


>gb|EXB86677.1| DNA-directed RNA polymerase D subunit 2a [Morus notabilis]
          Length = 1196

 Score =  202 bits (515), Expect = 3e-50
 Identities = 96/159 (60%), Positives = 119/159 (74%), Gaps = 5/159 (3%)
 Frame = +3

Query: 9    LIKS*KISDATPFRPITVDYITERLKKCGYEQWGREQMYSGRTGSPMETKIFIGPTFYQR 188
            L K   +  ATPF   +VD ITE+L K G+ +WG E++Y+GRTG  + + IF+GPTFYQR
Sbjct: 1004 LAKGIPLRHATPFSTPSVDAITEQLHKAGFSRWGNERVYNGRTGEMVRSLIFMGPTFYQR 1063

Query: 189  LIHMAEDKIKYRNRGPVHPLTRQPVHDRKRHGGVKFGEMERDCMLAHGATSNLLERLFYL 368
            L+HM+EDK+K+RN GPVHPLTRQPV DRKR GGVKFGEMERDC+LAHGA++NL ERLF L
Sbjct: 1064 LVHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGVKFGEMERDCLLAHGASANLHERLFTL 1123

Query: 369  SDFSNMHICSKCQMVAPVVLES-----GSRGPHCNFCKT 470
            SD S MHIC +C  VA ++  S       RGP+C  CK+
Sbjct: 1124 SDSSQMHICHRCHNVANIIQRSLMGGRKVRGPYCRICKS 1162


>gb|AFW57180.1| putative DNA-directed RNA polymerase subunit family protein [Zea
            mays]
          Length = 1259

 Score =  202 bits (515), Expect = 3e-50
 Identities = 94/156 (60%), Positives = 118/156 (75%), Gaps = 7/156 (4%)
 Frame = +3

Query: 24   KISDATPFRPITVDYITERLKKCGYEQWGREQMYSGRTGSPMETKIFIGPTFYQRLIHMA 203
            K+  ATPF   TV+ I E+L K G+ +WG E + +G+TG  M++ +F+GPTFYQRL+HMA
Sbjct: 1070 KVRYATPFTTPTVEVIAEQLHKAGFCRWGEESVLNGQTGERMKSLVFMGPTFYQRLVHMA 1129

Query: 204  EDKIKYRNRGPVHPLTRQPVHDRKRHGGVKFGEMERDCMLAHGATSNLLERLFYLSDFSN 383
            EDK+K+RN GPVHPLTRQPV D+KR GGVKFGEMERDCMLAHGA +NL ERLF LSDFS 
Sbjct: 1130 EDKVKFRNTGPVHPLTRQPVEDKKRFGGVKFGEMERDCMLAHGAAANLHERLFTLSDFSR 1189

Query: 384  MHICSKCQMVAPVVLESGS-------RGPHCNFCKT 470
            MHIC  C+ VA V++ +         RGP+C FC++
Sbjct: 1190 MHICQACERVANVIVRAAEGGGGKKVRGPYCLFCRS 1225


>ref|XP_006652896.1| PREDICTED: DNA-directed RNA polymerases IV and V subunit 2-like
            [Oryza brachyantha]
          Length = 1250

 Score =  202 bits (514), Expect = 4e-50
 Identities = 94/151 (62%), Positives = 114/151 (75%), Gaps = 5/151 (3%)
 Frame = +3

Query: 36   ATPFRPITVDYITERLKKCGYEQWGREQMYSGRTGSPMETKIFIGPTFYQRLIHMAEDKI 215
            ATPF   + D IT++L K G+ +WG E + +GRTG  M + IF+GP FYQRLIHMAEDK+
Sbjct: 1067 ATPFTTASFDVITDQLHKAGFSRWGAESVLNGRTGERMHSLIFMGPNFYQRLIHMAEDKV 1126

Query: 216  KYRNRGPVHPLTRQPVHDRKRHGGVKFGEMERDCMLAHGATSNLLERLFYLSDFSNMHIC 395
            K+RN GPVHPLTRQPV DRKR GGVKFGEMERDC+LAHGA +NL ERLF LSDFS MHIC
Sbjct: 1127 KFRNTGPVHPLTRQPVADRKRFGGVKFGEMERDCLLAHGAAANLHERLFMLSDFSQMHIC 1186

Query: 396  SKCQMVAPVVLE-----SGSRGPHCNFCKTT 473
              C+ VA V++         RGP+C FC+++
Sbjct: 1187 QTCERVANVIMRPVPGGKKIRGPYCGFCRSS 1217


>ref|XP_006827132.1| hypothetical protein AMTR_s00010p00249150 [Amborella trichopoda]
            gi|548831561|gb|ERM94369.1| hypothetical protein
            AMTR_s00010p00249150 [Amborella trichopoda]
          Length = 1221

 Score =  202 bits (513), Expect = 5e-50
 Identities = 93/153 (60%), Positives = 119/153 (77%), Gaps = 4/153 (2%)
 Frame = +3

Query: 24   KISDATPFRPITVDYITERLKKCGYEQWGREQMYSGRTGSPMETKIFIGPTFYQRLIHMA 203
            ++  ATPF   + D IT++L++ G+ +WG E++YSGRTG   ++ IFIGPTFYQRL+HMA
Sbjct: 1035 RLKYATPFSTASFDDITDQLQRYGFSRWGTERVYSGRTGEMQKSLIFIGPTFYQRLVHMA 1094

Query: 204  EDKIKYRNRGPVHPLTRQPVHDRKRHGGVKFGEMERDCMLAHGATSNLLERLFYLSDFSN 383
            EDK+K+RN GPVHPLTRQPV DRKR GGVKFGEMERDC++AHGA +NL ERLF LSDFS+
Sbjct: 1095 EDKMKFRNTGPVHPLTRQPVADRKRFGGVKFGEMERDCLIAHGAAANLHERLFVLSDFSH 1154

Query: 384  MHICSKCQMVAPVVLES----GSRGPHCNFCKT 470
            M +C+KC  +A V + +      RGP C FCK+
Sbjct: 1155 MFVCTKCSNMANVTIRTVANRRERGPFCRFCKS 1187


>ref|XP_004145500.1| PREDICTED: DNA-directed RNA polymerase D subunit 2a-like [Cucumis
            sativus]
          Length = 1197

 Score =  202 bits (513), Expect = 5e-50
 Identities = 93/150 (62%), Positives = 118/150 (78%), Gaps = 5/150 (3%)
 Frame = +3

Query: 36   ATPFRPITVDYITERLKKCGYEQWGREQMYSGRTGSPMETKIFIGPTFYQRLIHMAEDKI 215
            ATPF   +VD IT++L + G+ +WG E++Y+GRTG  M + IF+GPTFYQRLIHMAEDK+
Sbjct: 1014 ATPFSTPSVDAITDQLHRAGFSRWGSERVYNGRTGEMMRSLIFMGPTFYQRLIHMAEDKV 1073

Query: 216  KYRNRGPVHPLTRQPVHDRKRHGGVKFGEMERDCMLAHGATSNLLERLFYLSDFSNMHIC 395
            K+RN GPVHPLTRQPV DRKR GG+KFGEMERDC++AHGA++NL ERLF LSD S MH+C
Sbjct: 1074 KFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGASANLHERLFTLSDSSQMHVC 1133

Query: 396  SKCQMVAPVVLESGS-----RGPHCNFCKT 470
             KC+ VA V+  S +     RGP+C  C++
Sbjct: 1134 QKCKNVASVIQRSVAGGRKMRGPYCRVCES 1163


>ref|XP_004501385.1| PREDICTED: DNA-directed RNA polymerase D subunit 2a-like [Cicer
            arietinum]
          Length = 1199

 Score =  201 bits (512), Expect = 6e-50
 Identities = 92/153 (60%), Positives = 121/153 (79%), Gaps = 5/153 (3%)
 Frame = +3

Query: 27   ISDATPFRPITVDYITERLKKCGYEQWGREQMYSGRTGSPMETKIFIGPTFYQRLIHMAE 206
            + +ATPF   +V+ IT++L + G+ +WG E++Y+GRTG  + + IF+GPTFYQRL HM+E
Sbjct: 1013 LRNATPFSTSSVEAITDQLHRAGFSRWGNERVYNGRTGEMVRSLIFMGPTFYQRLHHMSE 1072

Query: 207  DKIKYRNRGPVHPLTRQPVHDRKRHGGVKFGEMERDCMLAHGATSNLLERLFYLSDFSNM 386
            DK+K+RN GPVHPLTRQPV DRKR GG+KFGEMERDC++AHGA++NL ERLF LSD S +
Sbjct: 1073 DKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGASANLYERLFTLSDSSQI 1132

Query: 387  HICSKCQMVAPVVLESGS-----RGPHCNFCKT 470
            HICSKC+ VA V+L   S     RGP+C FC++
Sbjct: 1133 HICSKCKNVANVILRPVSGGRKIRGPYCRFCES 1165