BLASTX nr result
ID: Ephedra25_contig00017388
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Ephedra25_contig00017388
(2047 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_006839002.1| hypothetical protein AMTR_s00002p00271910 [A... 172 5e-40
ref|XP_002279088.1| PREDICTED: pentatricopeptide repeat-containi... 164 2e-37
ref|XP_004162510.1| PREDICTED: pentatricopeptide repeat-containi... 159 3e-36
ref|XP_004138834.1| PREDICTED: pentatricopeptide repeat-containi... 159 3e-36
gb|EXB51131.1| hypothetical protein L484_009095 [Morus notabilis] 159 4e-36
ref|XP_002517094.1| pentatricopeptide repeat-containing protein,... 156 4e-35
gb|EMJ22798.1| hypothetical protein PRUPE_ppa026817mg, partial [... 153 2e-34
gb|EEC76169.1| hypothetical protein OsI_13484 [Oryza sativa Indi... 153 2e-34
ref|NP_001051249.1| Os03g0746400 [Oryza sativa Japonica Group] g... 153 2e-34
gb|ABF98845.1| pentatricopeptide, putative, expressed [Oryza sat... 153 2e-34
gb|AAK71569.2|AC087852_29 putative reverse transcriptase [Oryza ... 153 2e-34
ref|XP_006650574.1| PREDICTED: pentatricopeptide repeat-containi... 152 7e-34
ref|XP_002520317.1| pentatricopeptide repeat-containing protein,... 151 1e-33
ref|XP_006849933.1| hypothetical protein AMTR_s00022p00121040 [A... 149 3e-33
ref|XP_003548477.1| PREDICTED: pentatricopeptide repeat-containi... 149 3e-33
gb|EOY05751.1| Pentatricopeptide repeat superfamily protein, put... 149 5e-33
ref|XP_003610755.1| Pentatricopeptide repeat-containing protein ... 149 6e-33
ref|XP_002307458.2| pentatricopeptide repeat-containing family p... 144 1e-31
ref|XP_002308024.2| pentatricopeptide repeat-containing family p... 144 1e-31
ref|XP_004136469.1| PREDICTED: pentatricopeptide repeat-containi... 144 1e-31
>ref|XP_006839002.1| hypothetical protein AMTR_s00002p00271910 [Amborella trichopoda]
gi|548841508|gb|ERN01571.1| hypothetical protein
AMTR_s00002p00271910 [Amborella trichopoda]
Length = 569
Score = 172 bits (436), Expect = 5e-40
Identities = 110/398 (27%), Positives = 187/398 (46%), Gaps = 14/398 (3%)
Frame = +1
Query: 622 VMSVMELVLNEWELGLRTFLWAKQQLNYKHTTEAYELIVHILGNAKKFDIMWQLLEEFKR 801
V V+ ++W L F WA +Q+ + ++TE Y+++V ILG K+FD MW ++EE ++
Sbjct: 139 VNKVLRRYNDDWISALNFFRWASKQVGFVNSTETYDMMVDILGKMKQFDKMWDIVEEMRK 198
Query: 802 EGFLFRLKTLEVIFQSYVRAGSIEDSMEAFKQLCRLDDSVGTAALNSLIRVLCME---NR 972
G L L T+ + + AG +D+++ F + L T+++N ++ LC E R
Sbjct: 199 IGGLISLSTVSKMMRRLSGAGKWKDTIDVFYGIESLGLRKDTSSMNVVLDTLCKERNVER 258
Query: 973 KNDCSLVLRRLKEKCPPNEMTYSILIHAFCEGNKLSEALNIFEEMIQNNIQPSLATYSYI 1152
D LVL R + PPN T+++LIH +C+ +L EA EM P + +Y+ +
Sbjct: 259 ARDLFLVLGR---EIPPNAHTFNVLIHGWCKAKRLEEAEWTMREMKGYGFNPCVISYTSL 315
Query: 1153 IKALSANKQTEFAQKLFDHMKA-----------YALRKFGRTPEVGEFLTDTGLLDEGPS 1299
++A + + + L + M+A + FG+ E E L + +
Sbjct: 316 VEAYCSLHDFQNVEALLNEMEAKGCPPSVVTYTVVMHAFGKAKETQEALRIYERMKKSGC 375
Query: 1300 NFDSKAYXXXXXXXXXXXXXXXXXXXXXXMVKKGFTPSSKTYSSIFSHLCRKRKSREAFE 1479
D+ Y M G TPS TY+++ S +C + EA E
Sbjct: 376 TPDALFYNSLIFILGKAGRLRDARTIFEEMPNNGITPSLTTYNTLISVICEHSQEEEALE 435
Query: 1480 LFNIVVATSHFPDLQTLNTLIETFCSTGHVGIAMELWYMMQEKGYGCNRESYCVFIHGLC 1659
+ + +S PD++T L++ FC G + + L + M K + ++ + +HGLC
Sbjct: 436 VLREMKESSCKPDIRTYTPLLKMFCKKGRMKVLEYLLHDMIRKDISLDLGTFSLLVHGLC 495
Query: 1660 YNSLFEDAFFYFNEMVQNGIVPLFETYRKLLYGLLRGN 1773
S + A +F EMV G+VP + T+R L L R N
Sbjct: 496 RASKLDGACLFFEEMVIRGLVPKYNTFRILREELDRMN 533
>ref|XP_002279088.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22670,
mitochondrial [Vitis vinifera]
Length = 535
Score = 164 bits (414), Expect = 2e-37
Identities = 104/394 (26%), Positives = 173/394 (43%), Gaps = 11/394 (2%)
Frame = +1
Query: 604 SLRPEFVMSVMELVLNEWELGLRTFLWAKQQLNYKHTTEAYELIVHILGNAKKFDIMWQL 783
S+ V V++ N+W F WAK Q Y+H+ +Y +V ILG KKFD+MW+L
Sbjct: 116 SVSESLVEQVLKRFSNDWIPAFGFFKWAKAQTGYRHSMNSYNSMVDILGKLKKFDLMWEL 175
Query: 784 LEEFKREGFLFRLKTLEVIFQSYVRAGSIEDSMEAFKQLCRLDDSVGTAALNSLIRVLCM 963
+EE R G L T+ + + RA +D++EAF+ + R T A+N+L+ L
Sbjct: 176 VEEMDRLGGYVSLATMTKVMRRLARASRWKDAIEAFRGMERFGVKKDTLAMNTLMDALVK 235
Query: 964 ENRKNDCSLVLRRLKEKCPPNEMTYSILIHAFCEGNKLSEALNIFEEMIQNNIQPSLATY 1143
EN + V K+ N T+++LIH +C+ K+ AL EM ++ P + +Y
Sbjct: 236 ENSVEHANDVFVEFKDSILLNPHTFNVLIHGWCKARKMDNALKSMAEMKEHGFCPDVISY 295
Query: 1144 SYIIKALSANKQTEFAQKLFDHMK-----------AYALRKFGRTPEVGEFLTDTGLLDE 1290
+ I++A K + + M+ + G+ E+ + L +
Sbjct: 296 TSIVEAYCREKDFRKVNSVLNEMEEKGCPPNVVTYTIVMHALGKGKEISKALEVYEKMKG 355
Query: 1291 GPSNFDSKAYXXXXXXXXXXXXXXXXXXXXXXMVKKGFTPSSKTYSSIFSHLCRKRKSRE 1470
D+ Y M K+G P TY+++ S C + +
Sbjct: 356 SSCVPDTSFYSSLIYILSKAGRLKDARDVFEDMTKQGAIPDVLTYNTMISAACMHSQEED 415
Query: 1471 AFELFNIVVATSHFPDLQTLNTLIETFCSTGHVGIAMELWYMMQEKGYGCNRESYCVFIH 1650
A +L + +S PDL T + L++ C + + L M + +Y + +H
Sbjct: 416 ALKLLLKMEESSCKPDLNTYSPLLKMCCRNNRMKVLSALLNHMFKNDISLEVGTYSLLVH 475
Query: 1651 GLCYNSLFEDAFFYFNEMVQNGIVPLFETYRKLL 1752
GLC + E A +F EMV G+VP T++ LL
Sbjct: 476 GLCKSGKLEHACLFFEEMVSKGLVPKDCTHKLLL 509
Score = 62.4 bits (150), Expect = 7e-07
Identities = 41/166 (24%), Positives = 76/166 (45%), Gaps = 4/166 (2%)
Frame = +1
Query: 715 TEAYELIVHILGNAKKFDIMWQLLEEFKREGFLFRLKTLEVIFQSYVRAGSIEDSMEAFK 894
T Y +++IL A + + E+ ++G + + T + + ED A K
Sbjct: 362 TSFYSSLIYILSKAGRLKDARDVFEDMTKQGAIPDVLTYNTMISAACMHSQEED---ALK 418
Query: 895 QLCRLDDSVGTAALNS---LIRVLCMENRKNDCSLVLRRLKEKCPPNEM-TYSILIHAFC 1062
L ++++S LN+ L+++ C NR S +L + + E+ TYS+L+H C
Sbjct: 419 LLLKMEESSCKPDLNTYSPLLKMCCRNNRMKVLSALLNHMFKNDISLEVGTYSLLVHGLC 478
Query: 1063 EGNKLSEALNIFEEMIQNNIQPSLATYSYIIKALSANKQTEFAQKL 1200
+ KL A FEEM+ + P T+ ++K L E +++
Sbjct: 479 KSGKLEHACLFFEEMVSKGLVPKDCTHKLLLKELEKKSMVEAKERV 524
>ref|XP_004162510.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22670,
mitochondrial-like [Cucumis sativus]
Length = 614
Score = 159 bits (403), Expect = 3e-36
Identities = 105/406 (25%), Positives = 178/406 (43%), Gaps = 14/406 (3%)
Frame = +1
Query: 574 PEFVPQIKSGS---LRPEFVMSVMELVLNEWELGLRTFLWAKQQLNYKHTTEAYELIVHI 744
PE V + +G + V +++ N+W F WAK Q+ Y+H+ E+Y +V I
Sbjct: 180 PENVAEALNGKAYRVSNTLVAQLLKRFHNDWIQAYGIFKWAKDQIPYRHSPESYNSMVDI 239
Query: 745 LGNAKKFDIMWQLLEEFKREGFLFRLKTLEVIFQSYVRAGSIEDSMEAFKQLCRLDDSVG 924
LG AK F +MW+L++E L+T+ + + RAG ++++ AF+ + + S
Sbjct: 240 LGKAKNFRLMWELVDEMNHLAGSVSLETMSKVIRRLARAGRHQEAIHAFRNIEKYGISTD 299
Query: 925 TAALNSLIRVLCMENRKNDCSLVLRRLKEKCPPNEMTYSILIHAFCEGNKLSEALNIFEE 1104
T A+N L+ L E D V R LK P N ++++LIH +C+ KL EA I E
Sbjct: 300 TTAMNVLMDALVKEASVEDAHNVFRELKCSIPFNLASFNVLIHGYCKAKKLDEAWKIMGE 359
Query: 1105 MIQNNIQPSLATYSYIIKALSANKQTEFAQKLFDHMK-----------AYALRKFGRTPE 1251
+ ++ ++P + +Y+ I+A K K+ M+ + G+ +
Sbjct: 360 VEKSGLEPDVISYTAFIEAHCREKDFRNVDKVLVQMEHKGCKPNVITFTIIMHALGKAKQ 419
Query: 1252 VGEFLTDTGLLDEGPSNFDSKAYXXXXXXXXXXXXXXXXXXXXXXMVKKGFTPSSKTYSS 1431
+ E L + + DS Y M K+G TP TY++
Sbjct: 420 INEALKVYEKMKKEGCVPDSSFYSSLIFILGKAGRLTDVKEIVEDMEKQGVTPDVLTYNT 479
Query: 1432 IFSHLCRKRKSREAFELFNIVVATSHFPDLQTLNTLIETFCSTGHVGIAMELWYMMQEKG 1611
+ S C + A L + S PDL+T + L++ FC + + L M +
Sbjct: 480 LISCACAHSQEETALTLLLKMEEVSCKPDLKTYHPLLKMFCRKKRMKVLKFLLDHMFKND 539
Query: 1612 YGCNRESYCVFIHGLCYNSLFEDAFFYFNEMVQNGIVPLFETYRKL 1749
+Y + + GLC N A +F EM+ +VP T++ L
Sbjct: 540 VSIEAGTYAILVRGLCENGKLHLACSFFGEMLSKAMVPKDSTFKML 585
>ref|XP_004138834.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22670,
mitochondrial-like [Cucumis sativus]
Length = 591
Score = 159 bits (403), Expect = 3e-36
Identities = 105/406 (25%), Positives = 178/406 (43%), Gaps = 14/406 (3%)
Frame = +1
Query: 574 PEFVPQIKSGS---LRPEFVMSVMELVLNEWELGLRTFLWAKQQLNYKHTTEAYELIVHI 744
PE V + +G + V +++ N+W F WAK Q+ Y+H+ E+Y +V I
Sbjct: 157 PENVAEALNGKAYRVSNTLVAQLLKRFHNDWIQAYGIFKWAKDQIPYRHSPESYNSMVDI 216
Query: 745 LGNAKKFDIMWQLLEEFKREGFLFRLKTLEVIFQSYVRAGSIEDSMEAFKQLCRLDDSVG 924
LG AK F +MW+L++E L+T+ + + RAG ++++ AF+ + + S
Sbjct: 217 LGKAKNFRLMWELVDEMNHLAGSVSLETMSKVIRRLARAGRHQEAIHAFRNIEKYGISTD 276
Query: 925 TAALNSLIRVLCMENRKNDCSLVLRRLKEKCPPNEMTYSILIHAFCEGNKLSEALNIFEE 1104
T A+N L+ L E D V R LK P N ++++LIH +C+ KL EA I E
Sbjct: 277 TTAMNVLMDALVKEASVEDAHNVFRELKCSIPFNLASFNVLIHGYCKAKKLDEAWKIMGE 336
Query: 1105 MIQNNIQPSLATYSYIIKALSANKQTEFAQKLFDHMK-----------AYALRKFGRTPE 1251
+ ++ ++P + +Y+ I+A K K+ M+ + G+ +
Sbjct: 337 VEKSGLEPDVISYTAFIEAHCREKDFRNVDKVLVQMEHKGCKPNVITFTIIMHALGKAKQ 396
Query: 1252 VGEFLTDTGLLDEGPSNFDSKAYXXXXXXXXXXXXXXXXXXXXXXMVKKGFTPSSKTYSS 1431
+ E L + + DS Y M K+G TP TY++
Sbjct: 397 INEALKVYEKMKKEGCVPDSSFYSSLIFILGKAGRLTDVKEIVEDMEKQGVTPDVLTYNT 456
Query: 1432 IFSHLCRKRKSREAFELFNIVVATSHFPDLQTLNTLIETFCSTGHVGIAMELWYMMQEKG 1611
+ S C + A L + S PDL+T + L++ FC + + L M +
Sbjct: 457 LISCACAHSQEETALTLLLKMEEVSCKPDLKTYHPLLKMFCRKKRMKVLKFLLDHMFKND 516
Query: 1612 YGCNRESYCVFIHGLCYNSLFEDAFFYFNEMVQNGIVPLFETYRKL 1749
+Y + + GLC N A +F EM+ +VP T++ L
Sbjct: 517 VSIEAGTYAILVRGLCENGKLHLACSFFGEMLSKAMVPKDSTFKML 562
>gb|EXB51131.1| hypothetical protein L484_009095 [Morus notabilis]
Length = 542
Score = 159 bits (402), Expect = 4e-36
Identities = 108/408 (26%), Positives = 179/408 (43%), Gaps = 15/408 (3%)
Frame = +1
Query: 574 PEFVPQIKSG---SLRPEFVMSVMELVLNEWELGLRTFLWAKQQLNYKHTTEAYELIVHI 744
PE Q G S+ V +++ ++W F WAK Q YKH+ E Y+L++ I
Sbjct: 109 PEEAAQALDGCGLSVSENTVEQLLKRFSHDWVPAFGVFKWAKLQAGYKHSPELYDLMIDI 168
Query: 745 LGNAKKFDIMWQLLEEFKR-EGFLFRLKTLEVIFQSYVRAGSIEDSMEAFKQLCRLDDSV 921
LG AKKF +MW+L+EE EG++ L T+ + R +++++ F+ + R S
Sbjct: 169 LGKAKKFQLMWELIEEMNNLEGYI-SLSTMTKAMRRLARVCMYKEAIDVFRGIERFGLSK 227
Query: 922 GTAALNSLIRVLCMENRKNDCSLVLRRLKEKCPPNEMTYSILIHAFCEGNKLSEALNIFE 1101
ALN+L+ L E V +K+ P N+ +++ILI+ +C +L +A I E
Sbjct: 228 DVVALNNLMDALMKEKSVEHAYEVFSEVKKSIPVNDQSFNILINGWCRARQLDKARKIME 287
Query: 1102 EMIQNNIQPSLATYSYIIKALSANKQTEFAQKLFDHMK-----------AYALRKFGRTP 1248
+M ++ +P +Y+ ++ A +K L D M + G+
Sbjct: 288 DMEKHGFKPDTFSYTCLVDAYCGDKDFRKVYALLDEMNDKGCTPNIVTYTILMHALGKAK 347
Query: 1249 EVGEFLTDTGLLDEGPSNFDSKAYXXXXXXXXXXXXXXXXXXXXXXMVKKGFTPSSKTYS 1428
+V E L + E D+ Y M K+G P+ TY+
Sbjct: 348 QVNEALKVYEKMKENGCVPDASFYNSLIFILGKAGRLKDAREVFDDMSKQGVAPNGLTYT 407
Query: 1429 SIFSHLCRKRKSREAFELFNIVVATSHFPDLQTLNTLIETFCSTGHVGIAMELWYMMQEK 1608
++ S +C EA +L + S PDL T L++ C + + L M
Sbjct: 408 TMISCVCDHSLEEEALKLLKKMEEESCKPDLGTYAPLLKMCCKKKRMKVLYFLLNHMFNN 467
Query: 1609 GYGCNRESYCVFIHGLCYNSLFEDAFFYFNEMVQNGIVPLFETYRKLL 1752
+ +Y + I GLC + E A +F EMV G+VP + Y++LL
Sbjct: 468 DVSIDVGTYSLLITGLCKSGKVEHACSFFEEMVSKGLVPQYSPYKRLL 515
>ref|XP_002517094.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis] gi|223543729|gb|EEF45257.1| pentatricopeptide
repeat-containing protein, putative [Ricinus communis]
Length = 549
Score = 156 bits (394), Expect = 4e-35
Identities = 100/412 (24%), Positives = 183/412 (44%), Gaps = 12/412 (2%)
Frame = +1
Query: 622 VMSVMELVLNEWELGLRTFLWAKQQLNYKHTTEAYELIVHILGNAKKFDIMWQLLEEFKR 801
+ ++ N+W L F WAK Q Y H + Y+L+V ILG KKF MW+L++E +
Sbjct: 134 ISQLLNRFCNDWVPALGLFTWAKHQTGYVHPPDLYDLMVDILGRRKKFSFMWELVKEMEN 193
Query: 802 -EGFLFRLKTLEVIFQSYVRAGSIEDSMEAFKQLCRLDDSVGTAALNSLIRVLCMENRKN 978
EG++ L T++ + + RAG+ +D++EAF+ + +L ALN L+ L E
Sbjct: 194 LEGYV-SLVTMKKVMRRLARAGNFQDAVEAFRGIEKLGVRKDIEALNVLMDALVKEGSVE 252
Query: 979 DCSLVLRRLKEKCPPNEMTYSILIHAFCEGNKLSEALNIFEEMIQNNIQPSLATYSYIIK 1158
K+ + +++IL+H +C+ KL +A I +EM + QP++ +Y+ I+
Sbjct: 253 HAYSAFMEFKDSIHVDFQSFNILLHGYCKARKLDDARKIMDEMDKQGFQPNVVSYTCFIE 312
Query: 1159 ALSANKQTEFAQKLFDHMKAYA-----------LRKFGRTPEVGEFLTDTGLLDEGPSNF 1305
K + +F M+ + + G+ +V + L ++
Sbjct: 313 LYCKLKDFRNVEAIFSEMQEKSCKPNVITYTIFMHALGKAKQVNKALEVYEMMKSNCCVP 372
Query: 1306 DSKAYXXXXXXXXXXXXXXXXXXXXXXMVKKGFTPSSKTYSSIFSHLCRKRKSREAFELF 1485
D+ Y M K+G +P TY+++ + C + A +L
Sbjct: 373 DASFYSSLIFVLTQSGRLKDAWDVFEDMKKQGVSPDLLTYNTMITSACTHLEEENALKLL 432
Query: 1486 NIVVATSHFPDLQTLNTLIETFCSTGHVGIAMELWYMMQEKGYGCNRESYCVFIHGLCYN 1665
+ S PD+QT L++ C + + L M + + +Y + + GLC +
Sbjct: 433 RRMEEDSCKPDIQTYAPLLKMCCRKKRIKVLKFLLNHMFKNNISIDLGTYVLLVGGLCKS 492
Query: 1666 SLFEDAFFYFNEMVQNGIVPLFETYRKLLYGLLRGNNPDMLADLSSIVGELE 1821
E A +F EMV G++P TY+ L+ L + N + + ++ + E
Sbjct: 493 GKLELACSFFEEMVMKGLIPRDRTYKMLVEELEQNNLTEAKEKIQKLMFQTE 544
>gb|EMJ22798.1| hypothetical protein PRUPE_ppa026817mg, partial [Prunus persica]
Length = 543
Score = 153 bits (387), Expect = 2e-34
Identities = 113/446 (25%), Positives = 186/446 (41%), Gaps = 23/446 (5%)
Frame = +1
Query: 484 VVAQNDRSTAKQFLQPLSCSAAEKGISVH---LPEFVPQIKSGS---------LRPEFVM 627
V AQ R +K +PLS +A I L P +++ + L V
Sbjct: 85 VEAQKLRDPSKAVKRPLSETADTDDIDKVCRILKNGYPSLENAAQALDGCVSDLSNSLVE 144
Query: 628 SVMELVLNEWELGLRTFLWAKQQLNYKHTTEAYELIVHILGNAKKFDIMWQLLEEFKREG 807
V++ NEW F+WAK Q Y+H EAY +V ILG ++ F++MW+++EE
Sbjct: 145 RVLKRFSNEWVPAFGFFIWAKAQTGYRHPPEAYNSMVDILGKSENFELMWEMVEE----- 199
Query: 808 FLFRLKTLEVIFQSYVRAGSIEDSMEAFKQLCRLDDSVGTAALNSLIRVLCMENRKNDCS 987
++ + RAG +++++AF+ + R +LN+L+ L E
Sbjct: 200 ---------MVMRRLARAGRYKEAIDAFRGIERFGVRRDVLSLNTLMGALVKERSVEHAH 250
Query: 988 LVLRRLKEKCPPNEMTYSILIHAFCEGNKLSEALNIFEEMIQNNIQPSLATYSYIIKALS 1167
V KE P N T+++LIH +C+ KL A N EEM ++ P + +Y+ I+A
Sbjct: 251 EVFLEFKESIPLNPQTFNVLIHGWCKPRKLDIARNTMEEMEKHGFHPDVLSYTCFIEAYC 310
Query: 1168 ANKQTEFAQKLFDHMKAYA-----------LRKFGRTPEVGEFLTDTGLLDEGPSNFDSK 1314
+K ++ MK A + G+ E+ + L + D+
Sbjct: 311 HDKDFRKVDEVLGEMKDKACEPNTVTYTIIMHALGKAREITKALEVYEKMKRSGCVPDTS 370
Query: 1315 AYXXXXXXXXXXXXXXXXXXXXXXMVKKGFTPSSKTYSSIFSHLCRKRKSREAFELFNIV 1494
Y M +G P + T++++ S C + A +L +
Sbjct: 371 FYNSLIFLLGKAGRLKDVQEVVEDMTNQGVKPDTLTHNTLISSACAHSQEEAALKLLKNM 430
Query: 1495 VATSHFPDLQTLNTLIETFCSTGHVGIAMELWYMMQEKGYGCNRESYCVFIHGLCYNSLF 1674
S PDL+T L++ FC + + L M + +Y + + GLC N
Sbjct: 431 EEESCKPDLKTYAPLLKLFCRKKRMRVLCFLLDHMFKNDVSIEGGTYALLVRGLCSNGKL 490
Query: 1675 EDAFFYFNEMVQNGIVPLFETYRKLL 1752
E+A +F EMV G VP TY L+
Sbjct: 491 ENACSFFEEMVSKGFVPKDSTYNMLI 516
>gb|EEC76169.1| hypothetical protein OsI_13484 [Oryza sativa Indica Group]
Length = 1874
Score = 153 bits (387), Expect = 2e-34
Identities = 103/389 (26%), Positives = 172/389 (44%), Gaps = 14/389 (3%)
Frame = +1
Query: 649 NEWELGLRTFLWAKQQLNYKHTTEAYELIVHILGNAKKFDIMWQLLEEFKREGFLFRLKT 828
N+W F+W Q Y H ++Y+L+V ILG K+FD+MW L+ + G L L T
Sbjct: 1464 NDWVAAFGFFMWVGTQGGYCHCADSYDLMVDILGKFKQFDLMWGLINQMVEVGGLMSLMT 1523
Query: 829 LEVIFQSYVRAGSIEDSMEAFKQLCRLDDSVGTAALNSLIRVLCMENRKNDCSLVLRRLK 1008
+ + + A ++++AF ++ R T A+N L+ LC E V + L+
Sbjct: 1524 MTKVMRRLAGASRWTEAIDAFHKMDRFGVVKDTKAMNVLLDTLCKERSVKRARGVFQELR 1583
Query: 1009 EKCPPNEMTYSILIHAFCEGNKLSEALNIFEEMIQNNIQPSLATYSYIIKALSANKQTEF 1188
PP+E +++ L+H +C+ L EAL+ EEM Q+ PS+ TY+ +++A K +
Sbjct: 1584 GTIPPDENSFNTLVHGWCKARMLKEALDTMEEMKQHGFSPSVVTYTSLVEAYCMEKDFQT 1643
Query: 1189 AQKLFDHMK--------------AYALRKFGRTPEVGEFLTDTGLLDEGPSNFDSKAYXX 1326
L D M+ +AL K GRT E + T L ++G + D+ Y
Sbjct: 1644 VYALLDEMRKRRCPPNVVTYTILMHALGKAGRTREALD--TFDKLKEDGVAP-DASFYNS 1700
Query: 1327 XXXXXXXXXXXXXXXXXXXXMVKKGFTPSSKTYSSIFSHLCRKRKSREAFELFNIVVATS 1506
M G P+ T++++ S C ++ A +L + S
Sbjct: 1701 LIYILGRAGRLEDAYSVVEEMRTTGIAPNVTTFNTLISAACDHSQAENALKLLVKMEEQS 1760
Query: 1507 HFPDLQTLNTLIETFCSTGHVGIAMELWYMMQEKGYGCNRESYCVFIHGLCYNSLFEDAF 1686
PD++T L++ C V I + L M K + +Y + + LC N +
Sbjct: 1761 CNPDIKTYTPLLKLCCKRQWVKILLFLVCHMFRKDISPDFSTYTLLVSWLCRNGKVAQSC 1820
Query: 1687 FYFNEMVQNGIVPLFETYRKLLYGLLRGN 1773
+ EMV G P ET+ ++ L + N
Sbjct: 1821 LFLEEMVSKGFAPKQETFDLVMEKLEKRN 1849
>ref|NP_001051249.1| Os03g0746400 [Oryza sativa Japonica Group]
gi|113549720|dbj|BAF13163.1| Os03g0746400, partial [Oryza
sativa Japonica Group]
Length = 613
Score = 153 bits (387), Expect = 2e-34
Identities = 103/389 (26%), Positives = 172/389 (44%), Gaps = 14/389 (3%)
Frame = +1
Query: 649 NEWELGLRTFLWAKQQLNYKHTTEAYELIVHILGNAKKFDIMWQLLEEFKREGFLFRLKT 828
N+W F+W Q Y H ++Y+L+V ILG K+FD+MW L+ + G L L T
Sbjct: 203 NDWVAAFGFFMWVGTQGGYCHCADSYDLMVDILGKFKQFDLMWGLINQMVEVGGLMSLMT 262
Query: 829 LEVIFQSYVRAGSIEDSMEAFKQLCRLDDSVGTAALNSLIRVLCMENRKNDCSLVLRRLK 1008
+ + + A ++++AF ++ R T A+N L+ LC E V + L+
Sbjct: 263 MTKVMRRLAGASRWTEAIDAFHKMDRFGVVKDTKAMNVLLDTLCKERSVKRARGVFQELR 322
Query: 1009 EKCPPNEMTYSILIHAFCEGNKLSEALNIFEEMIQNNIQPSLATYSYIIKALSANKQTEF 1188
PP+E +++ L+H +C+ L EAL+ EEM Q+ PS+ TY+ +++A K +
Sbjct: 323 GTIPPDENSFNTLVHGWCKARMLKEALDTMEEMKQHGFSPSVVTYTSLVEAYCMEKDFQT 382
Query: 1189 AQKLFDHMK--------------AYALRKFGRTPEVGEFLTDTGLLDEGPSNFDSKAYXX 1326
L D M+ +AL K GRT E + T L ++G + D+ Y
Sbjct: 383 VYALLDEMRKRRCPPNVVTYTILMHALGKAGRTREALD--TFDKLKEDGVAP-DASFYNS 439
Query: 1327 XXXXXXXXXXXXXXXXXXXXMVKKGFTPSSKTYSSIFSHLCRKRKSREAFELFNIVVATS 1506
M G P+ T++++ S C ++ A +L + S
Sbjct: 440 LIYILGRAGRLEDAYSVVEEMRTTGIAPNVTTFNTLISAACDHSQAENALKLLVKMEEQS 499
Query: 1507 HFPDLQTLNTLIETFCSTGHVGIAMELWYMMQEKGYGCNRESYCVFIHGLCYNSLFEDAF 1686
PD++T L++ C V I + L M K + +Y + + LC N +
Sbjct: 500 CNPDIKTYTPLLKLCCKRQWVKILLFLVCHMFRKDISPDFSTYTLLVSWLCRNGKVAQSC 559
Query: 1687 FYFNEMVQNGIVPLFETYRKLLYGLLRGN 1773
+ EMV G P ET+ ++ L + N
Sbjct: 560 LFLEEMVSKGFAPKQETFDLVMEKLEKRN 588
>gb|ABF98845.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica Group]
gi|215693326|dbj|BAG88708.1| unnamed protein product
[Oryza sativa Japonica Group] gi|222625789|gb|EEE59921.1|
hypothetical protein OsJ_12549 [Oryza sativa Japonica
Group]
Length = 554
Score = 153 bits (387), Expect = 2e-34
Identities = 103/389 (26%), Positives = 172/389 (44%), Gaps = 14/389 (3%)
Frame = +1
Query: 649 NEWELGLRTFLWAKQQLNYKHTTEAYELIVHILGNAKKFDIMWQLLEEFKREGFLFRLKT 828
N+W F+W Q Y H ++Y+L+V ILG K+FD+MW L+ + G L L T
Sbjct: 144 NDWVAAFGFFMWVGTQGGYCHCADSYDLMVDILGKFKQFDLMWGLINQMVEVGGLMSLMT 203
Query: 829 LEVIFQSYVRAGSIEDSMEAFKQLCRLDDSVGTAALNSLIRVLCMENRKNDCSLVLRRLK 1008
+ + + A ++++AF ++ R T A+N L+ LC E V + L+
Sbjct: 204 MTKVMRRLAGASRWTEAIDAFHKMDRFGVVKDTKAMNVLLDTLCKERSVKRARGVFQELR 263
Query: 1009 EKCPPNEMTYSILIHAFCEGNKLSEALNIFEEMIQNNIQPSLATYSYIIKALSANKQTEF 1188
PP+E +++ L+H +C+ L EAL+ EEM Q+ PS+ TY+ +++A K +
Sbjct: 264 GTIPPDENSFNTLVHGWCKARMLKEALDTMEEMKQHGFSPSVVTYTSLVEAYCMEKDFQT 323
Query: 1189 AQKLFDHMK--------------AYALRKFGRTPEVGEFLTDTGLLDEGPSNFDSKAYXX 1326
L D M+ +AL K GRT E + T L ++G + D+ Y
Sbjct: 324 VYALLDEMRKRRCPPNVVTYTILMHALGKAGRTREALD--TFDKLKEDGVAP-DASFYNS 380
Query: 1327 XXXXXXXXXXXXXXXXXXXXMVKKGFTPSSKTYSSIFSHLCRKRKSREAFELFNIVVATS 1506
M G P+ T++++ S C ++ A +L + S
Sbjct: 381 LIYILGRAGRLEDAYSVVEEMRTTGIAPNVTTFNTLISAACDHSQAENALKLLVKMEEQS 440
Query: 1507 HFPDLQTLNTLIETFCSTGHVGIAMELWYMMQEKGYGCNRESYCVFIHGLCYNSLFEDAF 1686
PD++T L++ C V I + L M K + +Y + + LC N +
Sbjct: 441 CNPDIKTYTPLLKLCCKRQWVKILLFLVCHMFRKDISPDFSTYTLLVSWLCRNGKVAQSC 500
Query: 1687 FYFNEMVQNGIVPLFETYRKLLYGLLRGN 1773
+ EMV G P ET+ ++ L + N
Sbjct: 501 LFLEEMVSKGFAPKQETFDLVMEKLEKRN 529
>gb|AAK71569.2|AC087852_29 putative reverse transcriptase [Oryza sativa Japonica Group]
Length = 1833
Score = 153 bits (387), Expect = 2e-34
Identities = 103/389 (26%), Positives = 172/389 (44%), Gaps = 14/389 (3%)
Frame = +1
Query: 649 NEWELGLRTFLWAKQQLNYKHTTEAYELIVHILGNAKKFDIMWQLLEEFKREGFLFRLKT 828
N+W F+W Q Y H ++Y+L+V ILG K+FD+MW L+ + G L L T
Sbjct: 1423 NDWVAAFGFFMWVGTQGGYCHCADSYDLMVDILGKFKQFDLMWGLINQMVEVGGLMSLMT 1482
Query: 829 LEVIFQSYVRAGSIEDSMEAFKQLCRLDDSVGTAALNSLIRVLCMENRKNDCSLVLRRLK 1008
+ + + A ++++AF ++ R T A+N L+ LC E V + L+
Sbjct: 1483 MTKVMRRLAGASRWTEAIDAFHKMDRFGVVKDTKAMNVLLDTLCKERSVKRARGVFQELR 1542
Query: 1009 EKCPPNEMTYSILIHAFCEGNKLSEALNIFEEMIQNNIQPSLATYSYIIKALSANKQTEF 1188
PP+E +++ L+H +C+ L EAL+ EEM Q+ PS+ TY+ +++A K +
Sbjct: 1543 GTIPPDENSFNTLVHGWCKARMLKEALDTMEEMKQHGFSPSVVTYTSLVEAYCMEKDFQT 1602
Query: 1189 AQKLFDHMK--------------AYALRKFGRTPEVGEFLTDTGLLDEGPSNFDSKAYXX 1326
L D M+ +AL K GRT E + T L ++G + D+ Y
Sbjct: 1603 VYALLDEMRKRRCPPNVVTYTILMHALGKAGRTREALD--TFDKLKEDGVAP-DASFYNS 1659
Query: 1327 XXXXXXXXXXXXXXXXXXXXMVKKGFTPSSKTYSSIFSHLCRKRKSREAFELFNIVVATS 1506
M G P+ T++++ S C ++ A +L + S
Sbjct: 1660 LIYILGRAGRLEDAYSVVEEMRTTGIAPNVTTFNTLISAACDHSQAENALKLLVKMEEQS 1719
Query: 1507 HFPDLQTLNTLIETFCSTGHVGIAMELWYMMQEKGYGCNRESYCVFIHGLCYNSLFEDAF 1686
PD++T L++ C V I + L M K + +Y + + LC N +
Sbjct: 1720 CNPDIKTYTPLLKLCCKRQWVKILLFLVCHMFRKDISPDFSTYTLLVSWLCRNGKVAQSC 1779
Query: 1687 FYFNEMVQNGIVPLFETYRKLLYGLLRGN 1773
+ EMV G P ET+ ++ L + N
Sbjct: 1780 LFLEEMVSKGFAPKQETFDLVMEKLEKRN 1808
>ref|XP_006650574.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22670,
mitochondrial-like [Oryza brachyantha]
Length = 549
Score = 152 bits (383), Expect = 7e-34
Identities = 101/389 (25%), Positives = 169/389 (43%), Gaps = 14/389 (3%)
Frame = +1
Query: 649 NEWELGLRTFLWAKQQLNYKHTTEAYELIVHILGNAKKFDIMWQLLEEFKREGFLFRLKT 828
N+W F+WA Q Y H ++Y+L+V ILG +K+FD+MW L+ + G L L T
Sbjct: 139 NDWVAAFGFFMWAGTQGGYCHCADSYDLMVDILGKSKQFDLMWGLINQMVEVGGLVSLMT 198
Query: 829 LEVIFQSYVRAGSIEDSMEAFKQLCRLDDSVGTAALNSLIRVLCMENRKNDCSLVLRRLK 1008
+ + + A D+++AF ++ R T A+N L+ LC E + L+
Sbjct: 199 MTKVMRRLAGASRWTDAIDAFHRMDRFGVVKDTKAMNVLLDTLCKERSVKRARGAFQELR 258
Query: 1009 EKCPPNEMTYSILIHAFCEGNKLSEALNIFEEMIQNNIQPSLATYSYIIKALSANKQTEF 1188
PP+E +++ L+H +C+ L EAL EEM Q+ PS+ TY+ +++A K +
Sbjct: 259 GTIPPDESSFNTLVHGWCKARMLKEALETMEEMNQHGFSPSVVTYTSLLEAYCMEKDFQT 318
Query: 1189 AQKLFDHMK--------------AYALRKFGRTPEVGEFLTDTGLLDEGPSNFDSKAYXX 1326
L D M +AL K GRT E + L ++G + D+ Y
Sbjct: 319 VYSLLDEMHKRRCPPNVITYTIVMHALGKAGRTREALDMFDK--LKEDGVAP-DASFYNS 375
Query: 1327 XXXXXXXXXXXXXXXXXXXXMVKKGFTPSSKTYSSIFSHLCRKRKSREAFELFNIVVATS 1506
M K G + T++++ S C ++ A +L + S
Sbjct: 376 LIYILGRAGRLEDAYSVVEEMHKTGIPSNVTTFNTLISAACDHSQAENALKLLVKMEEQS 435
Query: 1507 HFPDLQTLNTLIETFCSTGHVGIAMELWYMMQEKGYGCNRESYCVFIHGLCYNSLFEDAF 1686
PD++T L++ C V + L M K + +Y + + LC N +
Sbjct: 436 CKPDIKTYTPLLKLCCKKQWVKTLLFLVCHMFRKDISPDFSTYTLLVSWLCRNGKVAQSC 495
Query: 1687 FYFNEMVQNGIVPLFETYRKLLYGLLRGN 1773
+ EM+ G P ET+ ++ L + N
Sbjct: 496 LFLEEMISKGFTPKLETFDLVMKKLEKRN 524
>ref|XP_002520317.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis] gi|223540536|gb|EEF42103.1| pentatricopeptide
repeat-containing protein, putative [Ricinus communis]
Length = 439
Score = 151 bits (381), Expect = 1e-33
Identities = 102/414 (24%), Positives = 183/414 (44%), Gaps = 12/414 (2%)
Frame = +1
Query: 613 PEFVMSVMELVLNEWELGLRTFLWAKQQLNYKHTTEAYELIVHILGNAKKFDIMWQLLEE 792
PE V V+ N + R F WA++QL+Y H+ AY ++ L +++ IMW L+
Sbjct: 22 PEIVEDVLRRFENAGMVAYRFFEWAEKQLHYTHSVRAYHTMIESLAKIRQYQIMWDLINA 81
Query: 793 FKREGFLFRLKTLEVIFQSYVRAGSIEDSMEAFKQLCRLDDSVGTAALNSLIRVLCMENR 972
KR+ L ++T +I + Y RA +E+++ F + + D AA N L LC
Sbjct: 82 MKRKRML-NVETFCIIMRKYARAQKLEEAVYTFNVMEKYDVPPNLAAFNGLFSALCKSKN 140
Query: 973 KNDCSLVLRRLKEKCPPNEMTYSILIHAFCEGNKLSEALNIFEEMIQNNIQPSLATYSYI 1152
+ K++ P+ TY+IL+ + + L +A IF EM+ P + TY +
Sbjct: 141 VRKAQEIFDSSKDRFVPDSKTYTILLEGWGKTPNLPKAREIFREMVDVGCSPDIVTYGIM 200
Query: 1153 IKALSANKQTEFAQKLFDHMK-----------AYALRKFGRTPEVGEFLTDTGL-LDEGP 1296
+ L + + A + M + + +G + E DT L +++
Sbjct: 201 VDILCKAGRVDEALDIVKEMDLTICKPTSFIYSVLIHTYGIENRI-EDAVDTFLGMEKNG 259
Query: 1297 SNFDSKAYXXXXXXXXXXXXXXXXXXXXXXMVKKGFTPSSKTYSSIFSHLCRKRKSREAF 1476
D AY M KG P+S+T + I ++L + ++ EAF
Sbjct: 260 VKADVAAYNALIGAFCKVNKFKNVYRVLNEMDYKGMQPNSRTLNIILNNLIARGETDEAF 319
Query: 1477 ELFNIVVATSHFPDLQTLNTLIETFCSTGHVGIAMELWYMMQEKGYGCNRESYCVFIHGL 1656
+F ++ PD T +I+ FC + +A+++W M++K + + ++ V I+GL
Sbjct: 320 RVFRRMIKVCE-PDADTYTMMIKMFCERNELEMALKVWKYMKKKHFVPSMHTFSVLINGL 378
Query: 1657 CYNSLFEDAFFYFNEMVQNGIVPLFETYRKLLYGLLRGNNPDMLADLSSIVGEL 1818
C A +M++ GI P T+ +L + L++ D+L L + L
Sbjct: 379 CEEGDVSHACVMLEDMIEKGIRPSGVTFGRLRHLLIKEGREDVLEFLQQKINVL 432
>ref|XP_006849933.1| hypothetical protein AMTR_s00022p00121040 [Amborella trichopoda]
gi|548853531|gb|ERN11514.1| hypothetical protein
AMTR_s00022p00121040 [Amborella trichopoda]
Length = 438
Score = 149 bits (377), Expect = 3e-33
Identities = 95/403 (23%), Positives = 179/403 (44%), Gaps = 11/403 (2%)
Frame = +1
Query: 613 PEFVMSVMELVLNEWELGLRTFLWAKQQLNYKHTTEAYELIVHILGNAKKFDIMWQLLEE 792
P+ V +++ N R F W +Q+NY H+ ++Y +++ L +++ +MW L+ +
Sbjct: 21 PDLVEDILKRFENAGMQAYRFFQWVDKQINYSHSVKSYHIMIGSLAKIRQYQLMWDLVND 80
Query: 793 FKREGFLFRLKTLEVIFQSYVRAGSIEDSMEAFKQLCRLDDSVGTAALNSLIRVLCMENR 972
+R+ L +T ++ + Y RA +++++ F + + + A NSL+ C
Sbjct: 81 MRRKDILNN-ETFCIMIRKYARAHKVDEAVYTFNVMDKFGLTPNLTAFNSLLSAFCKAKN 139
Query: 973 KNDCSLVLRRLKEKCPPNEMTYSILIHAFCEGNKLSEALNIFEEMIQNNIQPSLATYSYI 1152
+ +K++ PN +TYSIL+ + + L +A IF EMI N +P + TY +
Sbjct: 140 VRKAQEIFDDMKDRFEPNSITYSILLEGWGKEPNLPKAREIFLEMIDKNCEPDIVTYGIM 199
Query: 1153 IKALSANKQTEFAQKLFDHMK-----------AYALRKFGRTPEVGEFLTDTGLLDEGPS 1299
I +L + E A M+ + + +G +G+ + +++
Sbjct: 200 IDSLCKAGRVEEATGYMKEMRSRGCIPTSYIYSILIHTYGVERSIGDAVDSFLEMEKDGI 259
Query: 1300 NFDSKAYXXXXXXXXXXXXXXXXXXXXXXMVKKGFTPSSKTYSSIFSHLCRKRKSREAFE 1479
D AY M KK P+S+T + I + L ++ EAF
Sbjct: 260 KADVAAYNALISAFCRAKKFKNVYRVLEEMDKKSVAPNSRTCNIILNGLIGSGETDEAFR 319
Query: 1480 LFNIVVATSHFPDLQTLNTLIETFCSTGHVGIAMELWYMMQEKGYGCNRESYCVFIHGLC 1659
+F ++ PD T +I+ FC + AM++W M K + + ++ V I+GLC
Sbjct: 320 IFKSMIKHCE-PDSDTYTMMIKMFCEIDKLEKAMKVWKYMGLKQFVPSMHTFSVLINGLC 378
Query: 1660 YNSLFEDAFFYFNEMVQNGIVPLFETYRKLLYGLLRGNNPDML 1788
A +M++ GI P T+R++ LL+ D+L
Sbjct: 379 RKGELNKACILLEDMIEKGIRPPDLTFRRVRQLLLKEGRKDVL 421
>ref|XP_003548477.1| PREDICTED: pentatricopeptide repeat-containing protein At5g15010,
mitochondrial-like [Glycine max]
Length = 612
Score = 149 bits (377), Expect = 3e-33
Identities = 109/391 (27%), Positives = 171/391 (43%), Gaps = 18/391 (4%)
Frame = +1
Query: 607 LRPEFVMSVMELVLNEWELGLRTFLWAKQQLNYKHTTEAYELIVHILGNAKKFDIMWQLL 786
L PE V+ V+ N+WE FLWA +Q Y H+ Y ++ ILG +KFD W L+
Sbjct: 156 LSPELVVEVLSRTRNDWEAAFTFFLWAGKQPGYAHSVREYHSMISILGKMRKFDTAWNLI 215
Query: 787 EEFK--REGF-LFRLKTLEVIFQSYVRAGSIEDSMEAFKQLCRLDDSVGTAALNSLIRVL 957
EE + R G L +TL ++ + Y + ++ F R + VG +SL+ L
Sbjct: 216 EEMRGGRNGLSLVTPQTLLIMIRKYCAVHDVARAINTFYAYKRFNFRVGLEEFHSLLSAL 275
Query: 958 CMENRKNDCSLVLRRLKEKCPPNEMTYSILIHAFCE-GNKLSEALNIFEEMIQNNIQPSL 1134
C D +L K+ P + +++I+++ +C S A I+ EMI+ IQ +
Sbjct: 276 CRYKNVQDAEYLLFCNKDVFPLDTKSFNIILNGWCNLIVSTSHAERIWHEMIKRRIQHDV 335
Query: 1135 ATYSYIIKALSANKQTEFAQKLFDHMK--------------AYALRKFGRTPEVGEFLTD 1272
+Y II S + + ++FD MK YAL K GR V E +
Sbjct: 336 VSYGSIISCYSKSSKLYKVLRMFDEMKKRKITPDRKVYNAVIYALAK-GRL--VKEAVNL 392
Query: 1273 TGLLDEGPSNFDSKAYXXXXXXXXXXXXXXXXXXXXXXMVKKGFTPSSKTYSSIFSHLCR 1452
G ++ D Y M+K+ +P+ +T+ + F L
Sbjct: 393 IGTMEGNDVTPDVVTYNSLIKPLCKAHKVDEAKQLFDEMLKRHLSPTIQTFHAFFRIL-- 450
Query: 1453 KRKSREAFELFNIVVATSHFPDLQTLNTLIETFCSTGHVGIAMELWYMMQEKGYGCNRES 1632
R E FEL + + +P ++T LI FC + ++W M+E +R S
Sbjct: 451 -RTKEEVFELLDKMKELRCYPTIETYIMLIRKFCRWCQLDDVFKIWDAMREDEISHDRSS 509
Query: 1633 YCVFIHGLCYNSLFEDAFFYFNEMVQNGIVP 1725
Y V IHGL N E+A Y+ EM + G +P
Sbjct: 510 YIVLIHGLFLNGKLEEAQRYYAEMQEKGFLP 540
>gb|EOY05751.1| Pentatricopeptide repeat superfamily protein, putative [Theobroma
cacao]
Length = 554
Score = 149 bits (376), Expect = 5e-33
Identities = 110/413 (26%), Positives = 173/413 (41%), Gaps = 21/413 (5%)
Frame = +1
Query: 655 WELGLRTFLWAKQQLNYKHTTEAYELIVHILGNAKKFDIMWQLLEEFKREGFLFRLKTLE 834
W F+WAK+Q Y+HT E Y+ +V ILG AKKFD++ L+ E + RL T+
Sbjct: 145 WISAYGVFIWAKKQSGYRHTPELYDSMVDILGKAKKFDLVLDLVNEMNQLKGYIRLNTMV 204
Query: 835 VIFQSYVRAGSIEDSMEAFKQLCRLDDSVGTAALNSLIRVLCMENRKNDCSLVLRRLKEK 1014
+ + +AG +++EAF++L ALN L+ L + V LKE
Sbjct: 205 KVIRRLAKAGRFSEAIEAFRRLEEYGIGKDVVALNGLLDALVKGDGVEHAYEVFVELKEC 264
Query: 1015 CPPNEMTYSILIHAFCEGNKLSEALNIFEEMIQNNIQPSLATYSYIIKALSANKQTEFAQ 1194
P N +++ILIH FC+ +L +A I EM + QP + +Y+ I+A K
Sbjct: 265 MPLNSSSFNILIHGFCKARRLDDARKILNEMEEYGCQPCVVSYTSFIEAYCHEKDFHNVD 324
Query: 1195 KLFDHMKAYALRK-----------------FGRTPEVGEFLTDTGLLDEGPSNFDSKAYX 1323
+ D MK R G+ EV E + + G L DS Y
Sbjct: 325 AVLDEMKEKGCRPNVVTYTIIMHARGKAGIIGKALEVYEKMKNDGCLP------DSSFYS 378
Query: 1324 XXXXXXXXXXXXXXXXXXXXXMVKKGFTPSSKTYSSIFSHLCRKRKSREAFELFNIVVAT 1503
M K+G P+ TY+++ + C +A +L +
Sbjct: 379 SLIFILSKSGRLKDADEIFEDMKKQGVRPNVLTYNTMITSACGHSLEEKALKLLQRMEED 438
Query: 1504 SHFPDLQTLNTLIETFCSTGHVGIAMELWYMMQEKGYGCNRESYCVFIHGLCYNSLFEDA 1683
S PD+ T L++ C + + L M + +Y + + LC + E A
Sbjct: 439 SCKPDISTYGPLLKMCCRKKRMKVLNFLLSHMLNNDVSIDLATYSLLVQRLCNSGKLEQA 498
Query: 1684 FFYFNEMVQNGIVPLFETYRKLLYGLLRGNN----PDMLADLSSIVGELELKG 1830
+F EMV G++P ++ RK L L N + + +L S + EL G
Sbjct: 499 CAFFEEMVLKGMIPK-DSIRKTLVEKLEKENMAKAKEQIQELMSNLKELVKTG 550
>ref|XP_003610755.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355512090|gb|AES93713.1| Pentatricopeptide
repeat-containing protein [Medicago truncatula]
Length = 596
Score = 149 bits (375), Expect = 6e-33
Identities = 104/389 (26%), Positives = 178/389 (45%), Gaps = 12/389 (3%)
Frame = +1
Query: 622 VMSVMELVLNEWELGLRTFLWAKQQLNYKHTTEAYELIVHILGNAKKFDIMWQLLEEFKR 801
VM V++ N+W F+WAK+Q Y H+ E Y L+V ILG AK+FD+MW+L++E KR
Sbjct: 180 VMQVLKRFGNDWVAAYGFFIWAKKQTPYVHSPEVYNLMVDILGKAKEFDLMWKLVKEMKR 239
Query: 802 -EGFLFRLKTLEVIFQSYVRAGSIEDSMEAFKQLCRLDDSVGTAALNSLIRVLCMENRKN 978
EG++ L T+ + + + +A ED++EAF+ + + TAALN L+ L
Sbjct: 240 IEGYVC-LDTMSKVMRRFAKAQRHEDAVEAFRGMGKYGVEKDTAALNKLLDALVKGQSIE 298
Query: 979 DCSLVLRRLKEKCPPNEMTYSILIHAFCEGNKLSEALNIFEEMIQNNIQPSLATYSYIIK 1158
VL K P + +++ILI+ +C+ +A + EE ++ +P + TY+ I+
Sbjct: 299 IAHNVLDEFKSSVPLSSPSFNILINGWCKVRNFEKARKVMEERKEHGFEPDVFTYNNFIE 358
Query: 1159 ALSANKQTEFAQKLFDHMK-----------AYALRKFGRTPEVGEFLTDTGLLDEGPSNF 1305
+ +K ++ + M+ L +G+ ++ + L + + +
Sbjct: 359 SYCHDKDFRKVDEVLEEMRGNGCPPNAVTYTILLLGYGKAGQLSKALEEYERMKKDGIVP 418
Query: 1306 DSKAYXXXXXXXXXXXXXXXXXXXXXXMVKKGFTPSSKTYSSIFSHLCRKRKSREAFELF 1485
D+ Y M K+G TY+++ S C K A L
Sbjct: 419 DTPFYSSLMYILGKAGRLKDACEVFDDMPKQGVVRDVVTYNTMISTACAHSKEETALRLL 478
Query: 1486 NIVVATSHFPDLQTLNTLIETFCSTGHVGIAMELWYMMQEKGYGCNRESYCVFIHGLCYN 1665
+ TS PDLQT + L++ C + + L M + +R +Y + + L +
Sbjct: 479 KEMEETSCKPDLQTYHPLLKMCCKKKRMKVLKFLLDHMFKHDLCPDRGTYTLLVQSLSNS 538
Query: 1666 SLFEDAFFYFNEMVQNGIVPLFETYRKLL 1752
+A +F EMV G P+ ET KLL
Sbjct: 539 GKLVEACTFFEEMVSKGFTPM-ETTVKLL 566
>ref|XP_002307458.2| pentatricopeptide repeat-containing family protein [Populus
trichocarpa] gi|550339385|gb|EEE94454.2|
pentatricopeptide repeat-containing family protein
[Populus trichocarpa]
Length = 478
Score = 144 bits (364), Expect = 1e-31
Identities = 98/415 (23%), Positives = 185/415 (44%), Gaps = 14/415 (3%)
Frame = +1
Query: 616 EFVMSVMELVLNEWELGLRTFLWAKQQLNYKHTTEAYELIVHILGNAKKFDIMWQLLEEF 795
+ V V++ N + R F WA++Q +Y H+ +A+ ++ L +++ +MW +++
Sbjct: 61 QIVDDVLKKFENAGMVAYRFFEWAEKQRHYNHSVKAFHTVIDSLAKIRQYQLMWDVVKVM 120
Query: 796 KREGFLFRLKTLEVIFQSYVRAGSIEDSMEAFKQLCRLDDSVGTAALNSLIRVLCMENRK 975
K + + ++T +I + Y RA +E+++ F + + D AA N L+ LC
Sbjct: 121 KSKRMV-NVETFCIIMRKYARAQKVEEAVYTFNIMDKYDVPPNLAAFNGLLSALCKSKNV 179
Query: 976 NDCSLVLRRLKEKCPPNEMTYSILIHAFCEGNKLSEALNIFEEMIQNNIQPSLATYSYII 1155
+ +K++ P+ TYSIL+ + + L +A IF EM+ N +P + TY ++
Sbjct: 180 RKAQEIFDSIKDRFVPDSKTYSILLEGWGKDPNLPKAREIFREMVSNGCRPDIVTYGIMV 239
Query: 1156 KALSANKQTEFAQKLFDHMKAYALRKFGRTPEVGEFLTDT----GLLDEGPSNF------ 1305
L + + A + + M + + TP + L T +++ S F
Sbjct: 240 DVLCKAGRVDEALGIVNEMDSTVCKP---TPFIYSVLVHTYGIENRIEDAVSTFLEMENN 296
Query: 1306 ----DSKAYXXXXXXXXXXXXXXXXXXXXXXMVKKGFTPSSKTYSSIFSHLCRKRKSREA 1473
D Y M KG TP+S+T++ I S L + ++ EA
Sbjct: 297 GIEPDVAVYNALIGAFCKANRLKNVYRVLNEMDCKGVTPNSRTFNIILSSLIGRGETDEA 356
Query: 1474 FELFNIVVATSHFPDLQTLNTLIETFCSTGHVGIAMELWYMMQEKGYGCNRESYCVFIHG 1653
+ +F ++ PD T +I+ FC + A+++W M+ K + + ++ V I+G
Sbjct: 357 YRVFLRMIKVCE-PDADTYTMMIKMFCERDELKKALKVWKYMKLKRFMPSMHTFQVLING 415
Query: 1654 LCYNSLFEDAFFYFNEMVQNGIVPLFETYRKLLYGLLRGNNPDMLADLSSIVGEL 1818
LC A EM++ GI P T+ +L L++ D+L L + L
Sbjct: 416 LCEKGDVTQACVLLEEMIEKGIRPSGVTFGRLRQLLIKEGREDVLKFLQKKINVL 470
>ref|XP_002308024.2| pentatricopeptide repeat-containing family protein [Populus
trichocarpa] gi|550335473|gb|EEE91547.2|
pentatricopeptide repeat-containing family protein
[Populus trichocarpa]
Length = 838
Score = 144 bits (364), Expect = 1e-31
Identities = 108/399 (27%), Positives = 169/399 (42%), Gaps = 12/399 (3%)
Frame = +1
Query: 607 LRPEFVMSVMELVLNEWELGLRTFLWAKQQLNYKHTTEAYELIVHILGNAKKFDIMWQLL 786
L P+ V S+++ N +LG R F+WA ++ E+ +LI +L N ++ Q L
Sbjct: 57 LSPKIVTSIIQNPPNP-QLGFRFFIWASNFKRFR-AWESCDLITDLLINQNGLELYCQTL 114
Query: 787 EEFKREGFLFRLKTLEVIFQSYVRAGSIEDSMEAFKQLCRLDDSVGTAALNSLIRVLCME 966
E K G V+ + Y++ G + +ME F + D + N ++ VL +
Sbjct: 115 EALKNGGIKVHNDAFFVLIKVYLKMGLTDKAMETFGSMRDFDCTPDVYTYNMILDVLIQK 174
Query: 967 N-RKNDCSLVLRRLKEKCPPNEMTYSILIHAFCEGNKLSEALNIFEEMIQNNIQPSLATY 1143
N ++ R +K C PN T+SILI C+ + +AL++F+EM Q I P TY
Sbjct: 175 NFLLLALTVYTRMMKLNCLPNVATFSILIDGLCKSGNVKDALHLFDEMTQRGILPDAFTY 234
Query: 1144 SYIIKALSANKQTEFAQKLFDHMKAYA-----------LRKFGRTPEVGEFLTDTGLLDE 1290
+I L +K+ + A +LFD MK L F V E + L ++
Sbjct: 235 CVVISGLCRSKRVDDAYRLFDKMKDSGVGPDFVTCNALLNGFCMLDRVDEAFSLLRLFEK 294
Query: 1291 GPSNFDSKAYXXXXXXXXXXXXXXXXXXXXXXMVKKGFTPSSKTYSSIFSHLCRKRKSRE 1470
D + Y M++ P Y+ + L K R+
Sbjct: 295 DGYVLDVRGYSCLIRGLFRAKRYEDVQLLYRKMIEDNVKPDVYLYTIMMKGLAEAGKVRD 354
Query: 1471 AFELFNIVVATSHFPDLQTLNTLIETFCSTGHVGIAMELWYMMQEKGYGCNRESYCVFIH 1650
A EL N + + PD N LI+ FC G + A L + N ++Y + I
Sbjct: 355 ALELLNEMTESGVVPDTVCYNVLIKGFCDMGLLSEARSLQLEISRHDCFPNVKTYSILIS 414
Query: 1651 GLCYNSLFEDAFFYFNEMVQNGIVPLFETYRKLLYGLLR 1767
G+C N L DA FNEM + G P T+ L+ GL +
Sbjct: 415 GMCRNGLTRDAQEIFNEMEKLGCYPSAVTFNSLIDGLCK 453
Score = 95.5 bits (236), Expect = 8e-17
Identities = 85/356 (23%), Positives = 137/356 (38%), Gaps = 1/356 (0%)
Frame = +1
Query: 703 YKHTTEAYELIVHILGNAKKFDIMWQLLEEFKREGFLFRLKTLEVIFQSYVRAGSIEDSM 882
Y Y ++ L AK+++ + L + + + ++ + AG + D++
Sbjct: 297 YVLDVRGYSCLIRGLFRAKRYEDVQLLYRKMIEDNVKPDVYLYTIMMKGLAEAGKVRDAL 356
Query: 883 EAFKQLCRLDDSVGTAALNSLIRVLCMENRKNDC-SLVLRRLKEKCPPNEMTYSILIHAF 1059
E ++ T N LI+ C ++ SL L + C PN TYSILI
Sbjct: 357 ELLNEMTESGVVPDTVCYNVLIKGFCDMGLLSEARSLQLEISRHDCFPNVKTYSILISGM 416
Query: 1060 CEGNKLSEALNIFEEMIQNNIQPSLATYSYIIKALSANKQTEFAQKLFDHMKAYALRKFG 1239
C +A IF EM + PS T++ +I L Q E A LF M + G
Sbjct: 417 CRNGLTRDAQEIFNEMEKLGCYPSAVTFNSLIDGLCKTGQLEKAHLLFYKM------EIG 470
Query: 1240 RTPEVGEFLTDTGLLDEGPSNFDSKAYXXXXXXXXXXXXXXXXXXXXXXMVKKGFTPSSK 1419
R P + FL L +GPS+ S
Sbjct: 471 RNPSL--FLR----LSQGPSH----------------------------------VLDSA 490
Query: 1420 TYSSIFSHLCRKRKSREAFELFNIVVATSHFPDLQTLNTLIETFCSTGHVGIAMELWYMM 1599
+ + LC +A+ + + + P + T N L+ FC G+ A +L+ M
Sbjct: 491 SLQKMVEQLCDSGLIHKAYRILMQLADSGDAPGIYTYNILVNGFCKLGNFNGAYKLFREM 550
Query: 1600 QEKGYGCNRESYCVFIHGLCYNSLFEDAFFYFNEMVQNGIVPLFETYRKLLYGLLR 1767
Q KG + +Y I+GL EDA+ F++M +NG P YR ++ + R
Sbjct: 551 QFKGLSPDTVTYGTLINGLLRFQREEDAYKVFDQMEKNGCTPDAAVYRTMMTWMCR 606
Score = 84.3 bits (207), Expect = 2e-13
Identities = 88/411 (21%), Positives = 159/411 (38%), Gaps = 32/411 (7%)
Frame = +1
Query: 694 QLNYKHTTEAYELIVHILGNAKKFDIMWQLLEEFKREGFLFRLKTLEVIFQSYVRAGSIE 873
+LN + +++ L + L +E + G L T V+ R+ ++
Sbjct: 189 KLNCLPNVATFSILIDGLCKSGNVKDALHLFDEMTQRGILPDAFTYCVVISGLCRSKRVD 248
Query: 874 DSMEAFKQLCRLDDSVGT--AALNSLIRVLCMENRKNDCSLVLRRL-KEKCPPNEMTYSI 1044
D+ F ++ D VG N+L+ CM +R ++ +LR K+ + YS
Sbjct: 249 DAYRLFDKM--KDSGVGPDFVTCNALLNGFCMLDRVDEAFSLLRLFEKDGYVLDVRGYSC 306
Query: 1045 LIHAFCEGNKLSEALNIFEEMIQNNIQPSLATYSYIIKALSANKQTEFAQKLFDHMKAYA 1224
LI + + ++ +MI++N++P + Y+ ++K L+ + A +L + M
Sbjct: 307 LIRGLFRAKRYEDVQLLYRKMIEDNVKPDVYLYTIMMKGLAEAGKVRDALELLNEMT--- 363
Query: 1225 LRKFGRTPEVGEF------LTDTGLLDEGPSNF----------DSKAYXXXXXXXXXXXX 1356
+ G P+ + D GLL E S + K Y
Sbjct: 364 --ESGVVPDTVCYNVLIKGFCDMGLLSEARSLQLEISRHDCFPNVKTYSILISGMCRNGL 421
Query: 1357 XXXXXXXXXXMVKKGFTPSSKTYSSIFSHLCRKRKSREAFELF-------------NIVV 1497
M K G PS+ T++S+ LC+ + +A LF +
Sbjct: 422 TRDAQEIFNEMEKLGCYPSAVTFNSLIDGLCKTGQLEKAHLLFYKMEIGRNPSLFLRLSQ 481
Query: 1498 ATSHFPDLQTLNTLIETFCSTGHVGIAMELWYMMQEKGYGCNRESYCVFIHGLCYNSLFE 1677
SH D +L ++E C +G + A + + + G +Y + ++G C F
Sbjct: 482 GPSHVLDSASLQKMVEQLCDSGLIHKAYRILMQLADSGDAPGIYTYNILVNGFCKLGNFN 541
Query: 1678 DAFFYFNEMVQNGIVPLFETYRKLLYGLLRGNNPDMLADLSSIVGELELKG 1830
A+ F EM G+ P TY L+ GLLR + D + ++E G
Sbjct: 542 GAYKLFREMQFKGLSPDTVTYGTLINGLLRFQREE---DAYKVFDQMEKNG 589
Score = 68.9 bits (167), Expect = 8e-09
Identities = 58/272 (21%), Positives = 103/272 (37%), Gaps = 6/272 (2%)
Frame = +1
Query: 1036 YSILIHAFCEGNKLSEALNIFEEMIQNNIQPSLATYSYIIKALSANKQTEFAQKLFDHMK 1215
+ +LI + + +A+ F M + P + TY+ I+ L A ++ M
Sbjct: 129 FFVLIKVYLKMGLTDKAMETFGSMRDFDCTPDVYTYNMILDVLIQKNFLLLALTVYTRMM 188
Query: 1216 AYALRKFGRTPEVGEF------LTDTGLLDEGPSNFDSKAYXXXXXXXXXXXXXXXXXXX 1377
K P V F L +G + + FD
Sbjct: 189 -----KLNCLPNVATFSILIDGLCKSGNVKDALHLFDE---------------------- 221
Query: 1378 XXXMVKKGFTPSSKTYSSIFSHLCRKRKSREAFELFNIVVATSHFPDLQTLNTLIETFCS 1557
M ++G P + TY + S LCR ++ +A+ LF+ + + PD T N L+ FC
Sbjct: 222 ---MTQRGILPDAFTYCVVISGLCRSKRVDDAYRLFDKMKDSGVGPDFVTCNALLNGFCM 278
Query: 1558 TGHVGIAMELWYMMQEKGYGCNRESYCVFIHGLCYNSLFEDAFFYFNEMVQNGIVPLFET 1737
V A L + ++ GY + Y I GL +ED + +M+++ + P
Sbjct: 279 LDRVDEAFSLLRLFEKDGYVLDVRGYSCLIRGLFRAKRYEDVQLLYRKMIEDNVKPDVYL 338
Query: 1738 YRKLLYGLLRGNNPDMLADLSSIVGELELKGI 1833
Y ++ GL + D ++ E+ G+
Sbjct: 339 YTIMMKGLAEAGK---VRDALELLNEMTESGV 367
>ref|XP_004136469.1| PREDICTED: pentatricopeptide repeat-containing protein At5g11310,
mitochondrial-like [Cucumis sativus]
gi|449503560|ref|XP_004162063.1| PREDICTED:
pentatricopeptide repeat-containing protein At5g11310,
mitochondrial-like [Cucumis sativus]
Length = 615
Score = 144 bits (363), Expect = 1e-31
Identities = 93/381 (24%), Positives = 173/381 (45%), Gaps = 23/381 (6%)
Frame = +1
Query: 676 FLWAKQQLNYKHTTEAYELIVHILGNAKKFDIMWQLLEEFKR---EGFLFRLKTLEVIFQ 846
FLWA ++ ++ + + ++++L +++FD W L+ R E FL ++ ++ +
Sbjct: 141 FLWAAKKSGFRPSAALFNRLINVLAKSREFDSAWSLITSRLRGGEESFLVSVEVFVILIR 200
Query: 847 SYVRAGSIEDSMEAFKQLCRLDDSVGTAA---LNSLIRVLCMENRKNDCSLVLRRLKE-- 1011
Y RAG ++ ++ ++ C L+ GT + L+ LC E S R +E
Sbjct: 201 RYARAGMVQPAIRTYEFACNLETISGTGSEGLFEILLDSLCKEGHVRVASEYFNRKREMG 260
Query: 1012 -KCPPNEMTYSILIHAFCEGNKLSEALNIFEEMIQNNIQPSLATYSYIIKALSANKQTEF 1188
P+ Y+ILI+ + KL A ++ EM +N I P++ TY +I+ + E
Sbjct: 261 SSFEPSIRAYNILINGWFRSRKLKHAQRLWFEMKKNKISPTVVTYGTLIEGYCRMRSVEI 320
Query: 1189 AQKLFDHMKAY--------------ALRKFGRTPEVGEFLTDTGLLDEGPSNFDSKAYXX 1326
A +L D M+ AL + GR E + +L++GP+ Y
Sbjct: 321 AIELVDEMRREGIEPNAIVYNPIVDALGEAGRFKEALGMMERFMVLEQGPT---ISTYNS 377
Query: 1327 XXXXXXXXXXXXXXXXXXXXMVKKGFTPSSKTYSSIFSHLCRKRKSREAFELFNIVVATS 1506
M+ +GFTP+ TY+ F + K E+ L+N ++ +
Sbjct: 378 LVKGYCKAGDLSGASKILKMMIGRGFTPTPTTYNYFFRFFSKYGKIEESMSLYNKMIESG 437
Query: 1507 HFPDLQTLNTLIETFCSTGHVGIAMELWYMMQEKGYGCNRESYCVFIHGLCYNSLFEDAF 1686
+ PD T + L++ C + +A+++ M+ +G+ + + + +H LC FE+AF
Sbjct: 438 YAPDKLTYHLLLKMLCEEERLNLAVQVCNEMKARGFDMDLATSTMLMHLLCKMHKFEEAF 497
Query: 1687 FYFNEMVQNGIVPLFETYRKL 1749
F M+ GIVP + T+ +L
Sbjct: 498 AEFEHMIHRGIVPQYLTFCRL 518