BLASTX nr result
ID: Ephedra25_contig00015681
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Ephedra25_contig00015681
(1184 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_006661522.1| PREDICTED: DNA-directed RNA polymerase IV su... 190 8e-46
ref|XP_003566523.1| PREDICTED: DNA-directed RNA polymerase D sub... 190 8e-46
ref|XP_006653694.1| PREDICTED: DNA-directed RNA polymerase IV su... 188 4e-45
gb|EEC77828.1| hypothetical protein OsI_17044 [Oryza sativa Indi... 183 1e-43
gb|EEE61535.1| hypothetical protein OsJ_15844 [Oryza sativa Japo... 182 3e-43
gb|EMT22317.1| DNA-directed RNA polymerase III subunit RPC1 [Aeg... 181 7e-43
gb|ACL30982.1| mutant DNA dependent RNA polymerase D largest sub... 181 7e-43
ref|NP_001182824.1| DNA dependent RNA polymerase D largest subun... 181 7e-43
ref|XP_006391790.1| hypothetical protein EUTSA_v10023214mg [Eutr... 180 1e-42
ref|XP_004970758.1| PREDICTED: DNA-directed RNA polymerase D sub... 177 6e-42
ref|XP_004970756.1| PREDICTED: DNA-directed RNA polymerase D sub... 177 6e-42
ref|XP_004970755.1| PREDICTED: DNA-directed RNA polymerase D sub... 177 6e-42
ref|XP_004970754.1| PREDICTED: DNA-directed RNA polymerase D sub... 177 6e-42
ref|XP_006300646.1| hypothetical protein CARUB_v10019657mg [Caps... 177 7e-42
gb|EMS66983.1| DNA-directed RNA polymerase D subunit 1 [Triticum... 174 5e-41
ref|XP_002886441.1| NRPD1a [Arabidopsis lyrata subsp. lyrata] gi... 174 6e-41
ref|NP_176490.2| DNA-directed RNA polymerase IV subunit 1 [Arabi... 173 1e-40
ref|XP_006477376.1| PREDICTED: DNA-directed RNA polymerase IV su... 170 1e-39
ref|XP_006477375.1| PREDICTED: DNA-directed RNA polymerase IV su... 170 1e-39
ref|XP_002275898.2| PREDICTED: LOW QUALITY PROTEIN: DNA-directed... 168 3e-39
>ref|XP_006661522.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1-like [Oryza
brachyantha]
Length = 1492
Score = 190 bits (483), Expect = 8e-46
Identities = 133/388 (34%), Positives = 193/388 (49%), Gaps = 5/388 (1%)
Frame = +2
Query: 8 FRNIYSDIIKVVLDHTQVGNSMVAMVKSGSKGSFQKLVQQGAFLGIQFYRDRQNFPFGFP 187
F+++++D++K+V H NSM+AM+ SGSKGS K VQQ A +G+Q FPF P
Sbjct: 751 FKSVFNDLLKMVHQHASKDNSMMAMINSGSKGSVLKFVQQTACVGLQL--PASIFPFRIP 808
Query: 188 PKLYRSFHTTVIPKESTSQASKCKHLQGSLESI---NYLGLIGSSFFEGLNPFEYFIHSV 358
+L + ++ C+ G+ E + N +I +SF +GLNP E +H++
Sbjct: 809 SELS-------CVSWNRHKSLNCEMTDGTSERMGGQNIYAVIRNSFLDGLNPLECLLHAI 861
Query: 359 SSRGNSFSQGADVPGXXXXXXXXXXXDIVVAYDGTVRNLYGNQIVQFSYSNHIQDNLEID 538
S R N FS+ ADVPG D VAYDGTVR+ YG QIVQFSY+ D + D
Sbjct: 862 SGRANFFSENADVPGTLTRKLMYHLRDTYVAYDGTVRSSYGQQIVQFSYNT--ADGMFRD 919
Query: 539 SPEAGLHLAGEAMGALAASSLGEMAYGILEKQLPSGHSHPLQILQEILGSGQG-KDCCKK 715
G G +G+ AA S+ E AYG L+ + + PL LQE+L + K
Sbjct: 920 HDLEG--EPGAPVGSWAACSISEAAYGALDHPVNALEDSPLMNLQEVLKCRKSTKSVDHT 977
Query: 716 ILLRLSRDLRNVHCGLEYGALLVKHHLETVELLQLTERYGVVFDSQIYHKIKHSKEALSF 895
LL LS+ LR G EY +L VK HLE V+ L + +++ K + +
Sbjct: 978 GLLFLSKHLRKYRYGFEYASLQVKDHLERVDFSDLVDAVMILYGGSDMQKTQGN------ 1031
Query: 896 TSSPVLPWVIHFSLSKEKLREKGLEISKLLNILKEEYANTLSKFRNLKLPNILFMGSEC- 1072
PW+ HF LS+E ++ K L + ++ L E+Y N L K N +P++ S C
Sbjct: 1032 ------PWITHFHLSQETMKIKRLRLGFIVRELIEQY-NALRKQSNNTIPSVCISNSNCS 1084
Query: 1073 CRNGCQYLCSNDKIFNSVCVHFVAETSS 1156
N C C + C+ VA+ S
Sbjct: 1085 VGNECVKNC-------TCCITMVAQVES 1105
>ref|XP_003566523.1| PREDICTED: DNA-directed RNA polymerase D subunit 1-like [Brachypodium
distachyon]
Length = 1470
Score = 190 bits (483), Expect = 8e-46
Identities = 130/384 (33%), Positives = 194/384 (50%), Gaps = 1/384 (0%)
Frame = +2
Query: 8 FRNIYSDIIKVVLDHTQVGNSMVAMVKSGSKGSFQKLVQQGAFLGIQFYRDRQNFPFGFP 187
F++++SD++K+V HT NSM+AM+ +GSKGS K VQQ A +G+Q + FPF P
Sbjct: 730 FKSVFSDLLKMVQQHTPKDNSMMAMINAGSKGSMLKFVQQAACVGLQLPAGK--FPFRIP 787
Query: 188 PKLYRSFHTTVIPKESTSQASKCKHLQGSLESINYLGLIGSSFFEGLNPFEYFIHSVSSR 367
+L + + K L G N +I +SF EGLNP E +HS+S R
Sbjct: 788 SELTCASWNRHKSLDCDISEGARKRLGGQ----NSHAVIRNSFIEGLNPLECLLHSISGR 843
Query: 368 GNSFSQGADVPGXXXXXXXXXXXDIVVAYDGTVRNLYGNQIVQFSYSNHIQDNLEIDSPE 547
N FS+ ADVPG DI VAYDGTVR+ YG QIVQF+Y +++ D +
Sbjct: 844 ANFFSENADVPGTLTKNLMYHLRDIYVAYDGTVRSSYGQQIVQFTYDT--AEDIYTDCGQ 901
Query: 548 AGLHLAGEAMGALAASSLGEMAYGILEKQLPSGHSHPLQILQEILGSGQGKDCCKKI-LL 724
G G +G+ AA S+ E AYG L+ + PL LQE+L +G + LL
Sbjct: 902 EGEF--GAPVGSWAACSISEAAYGALDHPVNVIEDSPLMNLQEVLKCQKGTNSLDHFGLL 959
Query: 725 RLSRDLRNVHCGLEYGALLVKHHLETVELLQLTERYGVVFDSQIYHKIKHSKEALSFTSS 904
LS++L+ G EY +L V+++LE ++ +L + +D K K S
Sbjct: 960 FLSKNLKKYRYGFEYASLYVQNYLEPMDFSELVNTVMIQYDGGGVQKTKGS--------- 1010
Query: 905 PVLPWVIHFSLSKEKLREKGLEISKLLNILKEEYANTLSKFRNLKLPNILFMGSECCRNG 1084
PW+ HF +SKE ++ K L + L+ L E Y + N+ +P + +C +
Sbjct: 1011 ---PWITHFHISKEMMKRKRLGLRLLVEDLTEHYNAKRDQLNNV-IPKVYISKCKCSDDD 1066
Query: 1085 CQYLCSNDKIFNSVCVHFVAETSS 1156
C N++ + C+ VA+ S
Sbjct: 1067 D---CINNQ---TCCITVVAQDES 1084
>ref|XP_006653694.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1-like [Oryza
brachyantha]
Length = 1386
Score = 188 bits (477), Expect = 4e-45
Identities = 126/362 (34%), Positives = 184/362 (50%), Gaps = 2/362 (0%)
Frame = +2
Query: 8 FRNIYSDIIKVVLDHTQVGNSMVAMVKSGSKGSFQKLVQQGAFLGIQFYRDRQNFPFGFP 187
F++I++D++K+V H NSM+AM+ SGSKGS K VQQ A +G+Q + FPF P
Sbjct: 645 FKSIFNDLLKMVQHHVSKDNSMMAMINSGSKGSIPKFVQQTACVGLQLPASK--FPFKIP 702
Query: 188 PKLYRSFHTTVIPKESTSQASKCKHLQGSLESINYLGLIGSSFFEGLNPFEYFIHSVSSR 367
L + + + S+ + +I +SF +GLNP E +H++S R
Sbjct: 703 SIL----SCVSWNRHKSLDYEITDYTIESMGGQSMYAVIRNSFLDGLNPLECLLHAISGR 758
Query: 368 GNSFSQGADVPGXXXXXXXXXXXDIVVAYDGTVRNLYGNQIVQFSYSNHIQDNLEIDSPE 547
N FS+ ADVPG D +AYDGTVR+ YG QIVQFSY D + I+
Sbjct: 759 ANFFSENADVPGTLTRKLMYHLRDTYIAYDGTVRSSYGQQIVQFSYDT--SDGMYIEHDI 816
Query: 548 AGLHLAGEAMGALAASSLGEMAYGILEKQLPSGHSHPLQILQEILGSGQGKDCCKKI-LL 724
G G +G+ AA S+ E AYG L+ + PL LQE+L +G + LL
Sbjct: 817 EG--EPGTPVGSWAACSISEAAYGALDHPVNGLEDSPLMNLQEVLKCHKGTNSVDHTGLL 874
Query: 725 RLSRDLRNVHCGLEYGALLVKHHLETVELLQLTERYGVVFDSQIYHKIKHSKEALSFTSS 904
LS+ LR G EY +L VK HLE V+ L + +++ K K +
Sbjct: 875 FLSKHLRKYRYGFEYASLEVKDHLERVDFSDLVDTVMILYGGSDIQKSKGN--------- 925
Query: 905 PVLPWVIHFSLSKEKLREKGLEISKLLNILKEEYANTLSKFRNLKLPNILFMGSEC-CRN 1081
PWV HF L++E ++ K L + ++ L ++Y N L K N +P++ + S+C N
Sbjct: 926 ---PWVTHFHLNQEAMKIKRLGLGYVVRELIDQY-NALRKQLNNTIPSVCILSSKCSVGN 981
Query: 1082 GC 1087
GC
Sbjct: 982 GC 983
>gb|EEC77828.1| hypothetical protein OsI_17044 [Oryza sativa Indica Group]
Length = 1598
Score = 183 bits (465), Expect = 1e-43
Identities = 122/358 (34%), Positives = 184/358 (51%), Gaps = 4/358 (1%)
Frame = +2
Query: 8 FRNIYSDIIKVVLDHTQVGNSMVAMVKSGSKGSFQKLVQQGAFLGIQFYRDRQNFPFGFP 187
F+++++D++K+V + NSM+ M+ SGSKGS K VQQ A +G+Q + FPF P
Sbjct: 665 FKSVFNDLLKMVQQYVSKDNSMMTMINSGSKGSVLKFVQQTACVGLQLPASK--FPFRIP 722
Query: 188 PKLYRSFHTTVIPKESTSQASKCKHLQGSLESI---NYLGLIGSSFFEGLNPFEYFIHSV 358
+L + ++ C+ G+ E + + +I +SF +GLNP E +H++
Sbjct: 723 SQLS-------CVSWNRHKSLNCEITDGTSECVGGQDMYAVIRNSFLDGLNPLECLLHAI 775
Query: 359 SSRGNSFSQGADVPGXXXXXXXXXXXDIVVAYDGTVRNLYGNQIVQFSYSNHIQDNLEID 538
S R N FS+ ADVPG D VAYDGTVR+ YG QIV+FSY D + D
Sbjct: 776 SGRANFFSENADVPGTLTRKLMYHLRDTYVAYDGTVRSSYGQQIVRFSYDT--ADGMYSD 833
Query: 539 SPEAGLHLAGEAMGALAASSLGEMAYGILEKQLPSGHSHPLQILQEILGSGQGKDCCKKI 718
G G +G+ AA S+ E AYG L+ + S PL LQE+L +G +
Sbjct: 834 HDLEG--EPGAPVGSWAACSISEAAYGALDHPVNSLEDSPLMNLQEVLKCHKGTNSLDHT 891
Query: 719 -LLRLSRDLRNVHCGLEYGALLVKHHLETVELLQLTERYGVVFDSQIYHKIKHSKEALSF 895
LL LS+ LR G EY +L VK HLE V+ + + +++ K K +
Sbjct: 892 GLLFLSKHLRKYRYGFEYASLEVKDHLERVDFSDMVDTVIILYGGSDMQKTKGN------ 945
Query: 896 TSSPVLPWVIHFSLSKEKLREKGLEISKLLNILKEEYANTLSKFRNLKLPNILFMGSE 1069
PW+ HF LS+E ++ K L + ++ + ++Y NTL K N +P++ SE
Sbjct: 946 ------PWITHFHLSQETMKIKRLGLEFIVREIIDQY-NTLRKQLNNAIPSVSISNSE 996
>gb|EEE61535.1| hypothetical protein OsJ_15844 [Oryza sativa Japonica Group]
Length = 1623
Score = 182 bits (461), Expect = 3e-43
Identities = 120/358 (33%), Positives = 184/358 (51%), Gaps = 4/358 (1%)
Frame = +2
Query: 8 FRNIYSDIIKVVLDHTQVGNSMVAMVKSGSKGSFQKLVQQGAFLGIQFYRDRQNFPFGFP 187
F+++++D++K+V + NSM+ M+ SGSKGS K VQQ A +G+Q + FPF P
Sbjct: 686 FKSVFNDLLKMVQQYVSKDNSMMTMINSGSKGSVLKFVQQTACVGLQLPASK--FPFRIP 743
Query: 188 PKLYRSFHTTVIPKESTSQASKCKHLQGSLESI---NYLGLIGSSFFEGLNPFEYFIHSV 358
+L + ++ C+ G+ E + + ++ +SF +GLNP E +H++
Sbjct: 744 SQLS-------CVSWNRHKSLNCEITDGTSECVGGQDMYAVVRNSFLDGLNPLECLLHAI 796
Query: 359 SSRGNSFSQGADVPGXXXXXXXXXXXDIVVAYDGTVRNLYGNQIVQFSYSNHIQDNLEID 538
S R N FS+ ADVPG D VAYDGTVR+ YG QIV+FSY D + D
Sbjct: 797 SGRANFFSENADVPGTLTRKLMYHLRDTYVAYDGTVRSSYGQQIVRFSYDT--ADGMYSD 854
Query: 539 SPEAGLHLAGEAMGALAASSLGEMAYGILEKQLPSGHSHPLQILQEILGSGQGKDCCKKI 718
G G +G+ AA S+ E AYG L+ + S PL LQE+L +G +
Sbjct: 855 HDLEG--EPGAPVGSWAACSISEAAYGALDHPVNSLEDSPLMNLQEVLKCHKGTNSLDHT 912
Query: 719 -LLRLSRDLRNVHCGLEYGALLVKHHLETVELLQLTERYGVVFDSQIYHKIKHSKEALSF 895
LL LS+ LR G EY +L VK HLE V+ + + +++ K K +
Sbjct: 913 GLLFLSKHLRKYRYGFEYASLEVKDHLERVDFSDMVDTVIILYGGSDMQKTKGN------ 966
Query: 896 TSSPVLPWVIHFSLSKEKLREKGLEISKLLNILKEEYANTLSKFRNLKLPNILFMGSE 1069
PW+ HF L++E ++ K L + ++ + ++Y NTL K N +P++ SE
Sbjct: 967 ------PWITHFHLNQETMKIKRLGLEFIVREIIDQY-NTLRKQLNNAIPSVSISNSE 1017
>gb|EMT22317.1| DNA-directed RNA polymerase III subunit RPC1 [Aegilops tauschii]
Length = 1334
Score = 181 bits (458), Expect = 7e-43
Identities = 132/388 (34%), Positives = 192/388 (49%), Gaps = 5/388 (1%)
Frame = +2
Query: 8 FRNIYSDIIKVVLDHTQVGNSMVAMVKSGSKGSFQKLVQQGAFLGIQFYRDRQNFPFGFP 187
F++++SD+ K+V HT NSM+ M +GSKGS K VQQ A +G+Q R FPF P
Sbjct: 659 FKSVFSDLQKMVQQHTAKNNSMMMMTNAGSKGSMLKFVQQTACVGLQLPASR--FPFRIP 716
Query: 188 PKLYRSFHTTVIPKESTSQASKCKHL-QGSLESI---NYLGLIGSSFFEGLNPFEYFIHS 355
+L S AS +H +G+ E + N +I +SF GLNP E +HS
Sbjct: 717 SEL--------------SCASWNRHKSEGTGECLGGQNLYAVIRNSFAGGLNPLECLLHS 762
Query: 356 VSSRGNSFSQGADVPGXXXXXXXXXXXDIVVAYDGTVRNLYGNQIVQFSYSNHIQDNLEI 535
+S R N FS+ ADVPG D+ VAYDGTVR+ YG QI+QF+Y +D
Sbjct: 763 ISGRANFFSENADVPGTLTRKLMYHLRDLYVAYDGTVRSSYGQQIMQFTYDT-AEDMCSD 821
Query: 536 DSPEAGLHLAGEAMGALAASSLGEMAYGILEKQLPSGHSHPLQILQEILGSGQGKDCCKK 715
+ E L G +G+ AA S+ E AYG L+ + S PL LQ++L +G
Sbjct: 822 RNVEGEL---GAPVGSWAACSISEAAYGALDHPVNSLEESPLMNLQDVLKCQKGGTSMDH 878
Query: 716 I-LLRLSRDLRNVHCGLEYGALLVKHHLETVELLQLTERYGVVFDSQIYHKIKHSKEALS 892
+ LL LS++L+ GLEY +L VK HLE V L + +++ K S
Sbjct: 879 VGLLFLSKNLKKYRYGLEYASLEVKDHLEPVNFSDLVDTVMILYGGCGIESTKGS----- 933
Query: 893 FTSSPVLPWVIHFSLSKEKLREKGLEISKLLNILKEEYANTLSKFRNLKLPNILFMGSEC 1072
PW+ HF LS+E + +K L ++ ++ L E+Y +K L P + +C
Sbjct: 934 -------PWITHFHLSQEMMTKKRLGLTLVVEELTEQYN---AKRDKLNFPKVYISKGKC 983
Query: 1073 CRNGCQYLCSNDKIFNSVCVHFVAETSS 1156
+ C N + + C+ V + S
Sbjct: 984 ---SADHECGNRQ---TCCITVVTQDDS 1005
>gb|ACL30982.1| mutant DNA dependent RNA polymerase D largest subunit rpd1-8 [Zea
mays]
Length = 1444
Score = 181 bits (458), Expect = 7e-43
Identities = 124/360 (34%), Positives = 180/360 (50%), Gaps = 5/360 (1%)
Frame = +2
Query: 8 FRNIYSDIIKVVLDHTQVGNSMVAMVKSGSKGSFQKLVQQGAFLGIQFYRDRQNFPFGFP 187
F++++ D++K+V H NSM+ M+ +GSKGS K QQ A +G+Q + FPF P
Sbjct: 717 FKDVFRDLLKMVQQHVSNDNSMMVMINAGSKGSMLKYAQQTACIGLQLPASK--FPFRIP 774
Query: 188 PKL----YRSFHTTVIPKESTSQASKCKHLQGSLESINYLGLIGSSFFEGLNPFEYFIHS 355
+L + + ESTS+ + N +I +SF EGLNP E +H+
Sbjct: 775 SQLSCISWNGQKSLNYEAESTSER---------VGGQNLYAVIKNSFIEGLNPLECLLHA 825
Query: 356 VSSRGNSFSQGADVPGXXXXXXXXXXXDIVVAYDGTVRNLYGNQIVQFSYSNHIQDNLEI 535
+S R N FS+ ADVPG DI VAYDGTVR+ YG QIVQFSY
Sbjct: 826 ISGRANFFSENADVPGTLTRKLMYHLRDIHVAYDGTVRSSYGQQIVQFSY---------- 875
Query: 536 DSPEAGLHLAGEAMGALAASSLGEMAYGILEKQLPSGHSHPLQILQEILGSGQGKDCCKK 715
DS + + G +G AA S+ E AYG LE + PL LQE+ + +
Sbjct: 876 DSVDDLVDKLGAPVGCRAACSISEAAYGALEHPVNGLEDSPLMNLQEVFKCHKATNSGDH 935
Query: 716 I-LLRLSRDLRNVHCGLEYGALLVKHHLETVELLQLTERYGVVFDSQIYHKIKHSKEALS 892
I LL LSR L+ GLEY +L VK+HLE V L E +++D + KI++
Sbjct: 936 IGLLFLSRHLKKYRYGLEYASLEVKNHLERVNFSDLVETIMIIYDG--HDKIRNEG---- 989
Query: 893 FTSSPVLPWVIHFSLSKEKLREKGLEISKLLNILKEEYANTLSKFRNLKLPNILFMGSEC 1072
W HF ++K +++K L + +++ L +EY T + N +P+I +C
Sbjct: 990 -------MWTTHFHINKAMMKKKRLGLRFVVDELAKEYDTTRDQLNN-AIPSIRISRRKC 1041
>ref|NP_001182824.1| DNA dependent RNA polymerase D largest subunit [Zea mays]
gi|219662980|gb|ACL30979.1| DNA dependent RNA polymerase
D largest subunit [Zea mays] gi|414869425|tpg|DAA47982.1|
TPA: putative DNA dependent RNA polymerase D largest
subunit family protein [Zea mays]
gi|414869426|tpg|DAA47983.1| TPA: putative DNA dependent
RNA polymerase D largest subunit family protein [Zea
mays]
Length = 1444
Score = 181 bits (458), Expect = 7e-43
Identities = 124/360 (34%), Positives = 180/360 (50%), Gaps = 5/360 (1%)
Frame = +2
Query: 8 FRNIYSDIIKVVLDHTQVGNSMVAMVKSGSKGSFQKLVQQGAFLGIQFYRDRQNFPFGFP 187
F++++ D++K+V H NSM+ M+ +GSKGS K QQ A +G+Q + FPF P
Sbjct: 717 FKDVFRDLLKMVQQHVSNDNSMMVMINAGSKGSMLKYAQQTACIGLQLPASK--FPFRIP 774
Query: 188 PKL----YRSFHTTVIPKESTSQASKCKHLQGSLESINYLGLIGSSFFEGLNPFEYFIHS 355
+L + + ESTS+ + N +I +SF EGLNP E +H+
Sbjct: 775 SQLSCISWNGQKSLNYEAESTSER---------VGGQNLYAVIKNSFIEGLNPLECLLHA 825
Query: 356 VSSRGNSFSQGADVPGXXXXXXXXXXXDIVVAYDGTVRNLYGNQIVQFSYSNHIQDNLEI 535
+S R N FS+ ADVPG DI VAYDGTVR+ YG QIVQFSY
Sbjct: 826 ISGRANFFSENADVPGTLTRKLMYHLRDIHVAYDGTVRSSYGQQIVQFSY---------- 875
Query: 536 DSPEAGLHLAGEAMGALAASSLGEMAYGILEKQLPSGHSHPLQILQEILGSGQGKDCCKK 715
DS + + G +G AA S+ E AYG LE + PL LQE+ + +
Sbjct: 876 DSVDDLVDKLGAPVGCRAACSISEAAYGALEHPVNGLEDSPLMNLQEVFKCHKATNSGDH 935
Query: 716 I-LLRLSRDLRNVHCGLEYGALLVKHHLETVELLQLTERYGVVFDSQIYHKIKHSKEALS 892
I LL LSR L+ GLEY +L VK+HLE V L E +++D + KI++
Sbjct: 936 IGLLFLSRHLKKYRYGLEYASLEVKNHLERVNFSDLVETIMIIYDG--HDKIRNEG---- 989
Query: 893 FTSSPVLPWVIHFSLSKEKLREKGLEISKLLNILKEEYANTLSKFRNLKLPNILFMGSEC 1072
W HF ++K +++K L + +++ L +EY T + N +P+I +C
Sbjct: 990 -------MWTTHFHINKAMMKKKRLGLRFVVDELAKEYDTTRDQLNN-AIPSIRISRRKC 1041
>ref|XP_006391790.1| hypothetical protein EUTSA_v10023214mg [Eutrema salsugineum]
gi|557088296|gb|ESQ29076.1| hypothetical protein
EUTSA_v10023214mg [Eutrema salsugineum]
Length = 1465
Score = 180 bits (456), Expect = 1e-42
Identities = 121/358 (33%), Positives = 184/358 (51%), Gaps = 2/358 (0%)
Frame = +2
Query: 8 FRNIYSDIIKVVLDHTQVGNSMVAMVKSGSKGSFQKLVQQGAFLGIQFYRDRQNFPFGFP 187
F++ Y D+ + + NS + M K+GSKG+ KLVQ +G+Q FGFP
Sbjct: 712 FKDAYRDVQALAYRYGDQSNSFLIMSKAGSKGNIGKLVQHSMCIGLQ--NSSVALSFGFP 769
Query: 188 PKLYRSFHTTVIPKESTSQASKCK-HLQGSLESINYLGLIGSSFFEGLNPFEYFIHSVSS 364
KL T + TS K + + ES G+I +SF GLNP E F+HSV+S
Sbjct: 770 RKL-----TCAAWNDPTSPLRGAKGEDKTASESFVPYGVIENSFLTGLNPLESFVHSVTS 824
Query: 365 RGNSFSQGADVPGXXXXXXXXXXXDIVVAYDGTVRNLYGNQIVQFSYSNHIQDNLEIDSP 544
R +SFS AD+PG DI AYDGTVRN +GN +VQFSY E DSP
Sbjct: 825 RDSSFSGNADLPGTLSRKLMFFMRDIYAAYDGTVRNSFGNHLVQFSY--------ETDSP 876
Query: 545 EAGLHLAGEAMGALAASSLGEMAYGILEKQLPSGHSHPLQILQEILGSGQGKDCCKKIL- 721
+AGEA+G+L+A +L E AY L++ + + PL L+ +L G K ++ +
Sbjct: 877 VE--EIAGEAVGSLSACALTEAAYSALDQPISLLETSPLLNLKNVLECGSKKGQREQTMS 934
Query: 722 LRLSRDLRNVHCGLEYGALLVKHHLETVELLQLTERYGVVFDSQIYHKIKHSKEALSFTS 901
L LS L G EYG+L +K+HLE + ++ ++F + FT
Sbjct: 935 LYLSETLSKKKHGFEYGSLDIKNHLEKLSFSEIVSTSMIIFSPR------------KFTR 982
Query: 902 SPVLPWVIHFSLSKEKLREKGLEISKLLNILKEEYANTLSKFRNLKLPNILFMGSECC 1075
P+ PWV+HF +SK+ +++K L +++ L ++Y + ++ + L L ++ + C
Sbjct: 983 IPLSPWVLHFHISKKAMKQKQLNAESVVSSLNKQYTSRKNELK-LDLTDLQIQSTNHC 1039
>ref|XP_004970758.1| PREDICTED: DNA-directed RNA polymerase D subunit 1-like isoform X5
[Setaria italica]
Length = 1181
Score = 177 bits (450), Expect = 6e-42
Identities = 127/394 (32%), Positives = 196/394 (49%), Gaps = 11/394 (2%)
Frame = +2
Query: 8 FRNIYSDIIKVVLDHTQVGNSMVAMVKSGSKGSFQKLVQQGAFLGIQFYRDRQNFPFGFP 187
F+++++D++K+V H NSM+ M+ +GSKGS K VQQ A +G+Q + FPF P
Sbjct: 448 FKDVFNDLLKMVQHHVSNDNSMMVMINAGSKGSMLKYVQQTACVGLQLPASK--FPFRIP 505
Query: 188 PKL----YRSFHTTVIPKESTSQASKCKHLQGSLESINYLGLIGSSFFEGLNPFEYFIHS 355
+L + + ESTS+ H++G N +I +SF EGLNP E +H+
Sbjct: 506 SQLSCVSWNRQKSLNCEAESTSE-----HVEGQ----NLYAVIRNSFIEGLNPLECLLHA 556
Query: 356 VSSRGNSFSQGADVPGXXXXXXXXXXXDIVVAYDGTVRNLYGNQIVQFSYSNHIQDNLEI 535
+S R N FS+ ADVPG D+ VAYDGTVR+ YG I+QFSY D++
Sbjct: 557 ISGRANFFSEHADVPGTLTRKLMYHLRDLHVAYDGTVRSSYGQHIMQFSYDT--ADDMCC 614
Query: 536 DSPEAGLHLAGEAMGALAASSLGEMAYGILEKQLPSGHSHPLQILQEILGSGQGKDCCKK 715
+ G G +G+ AA S+ E AYG L+ + PL LQE+ + +
Sbjct: 615 NHDLVG--ELGAPVGSWAACSISEAAYGALDHPVNGLEDSPLMNLQEVFKCHKATNSGDH 672
Query: 716 I-LLRLSRDLRNVHCGLEYGALLVKHHLETVELLQLTERYGVVFDSQIYHKIKHSKEALS 892
+ LL LS+ L+ LEY +L VK+HLE V L E +++D K +
Sbjct: 673 VGLLFLSKHLKKYRYSLEYASLEVKNHLERVNFSDLVETIMIIYDG--CDKTRKGG---- 726
Query: 893 FTSSPVLPWVIHFSLSKEKLREKGLEISKLLNILKEEYANTLSKFRNLKLPNI------L 1054
PW HF +SKE +++K L + ++ L +EY T ++ N +P++
Sbjct: 727 -------PWTTHFHISKEMMKKKRLGLGFVVEELTKEYDATRNQLNN-AIPSVHISKRKC 778
Query: 1055 FMGSECCRNGCQYLCSNDKIFNSVCVHFVAETSS 1156
+G +C +N ++ C+ VA+ S
Sbjct: 779 SVGDQCVQN------------SACCITLVAQAES 800
>ref|XP_004970756.1| PREDICTED: DNA-directed RNA polymerase D subunit 1-like isoform X3
[Setaria italica]
Length = 1362
Score = 177 bits (450), Expect = 6e-42
Identities = 127/394 (32%), Positives = 196/394 (49%), Gaps = 11/394 (2%)
Frame = +2
Query: 8 FRNIYSDIIKVVLDHTQVGNSMVAMVKSGSKGSFQKLVQQGAFLGIQFYRDRQNFPFGFP 187
F+++++D++K+V H NSM+ M+ +GSKGS K VQQ A +G+Q + FPF P
Sbjct: 629 FKDVFNDLLKMVQHHVSNDNSMMVMINAGSKGSMLKYVQQTACVGLQLPASK--FPFRIP 686
Query: 188 PKL----YRSFHTTVIPKESTSQASKCKHLQGSLESINYLGLIGSSFFEGLNPFEYFIHS 355
+L + + ESTS+ H++G N +I +SF EGLNP E +H+
Sbjct: 687 SQLSCVSWNRQKSLNCEAESTSE-----HVEGQ----NLYAVIRNSFIEGLNPLECLLHA 737
Query: 356 VSSRGNSFSQGADVPGXXXXXXXXXXXDIVVAYDGTVRNLYGNQIVQFSYSNHIQDNLEI 535
+S R N FS+ ADVPG D+ VAYDGTVR+ YG I+QFSY D++
Sbjct: 738 ISGRANFFSEHADVPGTLTRKLMYHLRDLHVAYDGTVRSSYGQHIMQFSYDT--ADDMCC 795
Query: 536 DSPEAGLHLAGEAMGALAASSLGEMAYGILEKQLPSGHSHPLQILQEILGSGQGKDCCKK 715
+ G G +G+ AA S+ E AYG L+ + PL LQE+ + +
Sbjct: 796 NHDLVG--ELGAPVGSWAACSISEAAYGALDHPVNGLEDSPLMNLQEVFKCHKATNSGDH 853
Query: 716 I-LLRLSRDLRNVHCGLEYGALLVKHHLETVELLQLTERYGVVFDSQIYHKIKHSKEALS 892
+ LL LS+ L+ LEY +L VK+HLE V L E +++D K +
Sbjct: 854 VGLLFLSKHLKKYRYSLEYASLEVKNHLERVNFSDLVETIMIIYDG--CDKTRKGG---- 907
Query: 893 FTSSPVLPWVIHFSLSKEKLREKGLEISKLLNILKEEYANTLSKFRNLKLPNI------L 1054
PW HF +SKE +++K L + ++ L +EY T ++ N +P++
Sbjct: 908 -------PWTTHFHISKEMMKKKRLGLGFVVEELTKEYDATRNQLNN-AIPSVHISKRKC 959
Query: 1055 FMGSECCRNGCQYLCSNDKIFNSVCVHFVAETSS 1156
+G +C +N ++ C+ VA+ S
Sbjct: 960 SVGDQCVQN------------SACCITLVAQAES 981
>ref|XP_004970755.1| PREDICTED: DNA-directed RNA polymerase D subunit 1-like isoform X2
[Setaria italica]
Length = 1450
Score = 177 bits (450), Expect = 6e-42
Identities = 127/394 (32%), Positives = 196/394 (49%), Gaps = 11/394 (2%)
Frame = +2
Query: 8 FRNIYSDIIKVVLDHTQVGNSMVAMVKSGSKGSFQKLVQQGAFLGIQFYRDRQNFPFGFP 187
F+++++D++K+V H NSM+ M+ +GSKGS K VQQ A +G+Q + FPF P
Sbjct: 717 FKDVFNDLLKMVQHHVSNDNSMMVMINAGSKGSMLKYVQQTACVGLQLPASK--FPFRIP 774
Query: 188 PKL----YRSFHTTVIPKESTSQASKCKHLQGSLESINYLGLIGSSFFEGLNPFEYFIHS 355
+L + + ESTS+ H++G N +I +SF EGLNP E +H+
Sbjct: 775 SQLSCVSWNRQKSLNCEAESTSE-----HVEGQ----NLYAVIRNSFIEGLNPLECLLHA 825
Query: 356 VSSRGNSFSQGADVPGXXXXXXXXXXXDIVVAYDGTVRNLYGNQIVQFSYSNHIQDNLEI 535
+S R N FS+ ADVPG D+ VAYDGTVR+ YG I+QFSY D++
Sbjct: 826 ISGRANFFSEHADVPGTLTRKLMYHLRDLHVAYDGTVRSSYGQHIMQFSYDT--ADDMCC 883
Query: 536 DSPEAGLHLAGEAMGALAASSLGEMAYGILEKQLPSGHSHPLQILQEILGSGQGKDCCKK 715
+ G G +G+ AA S+ E AYG L+ + PL LQE+ + +
Sbjct: 884 NHDLVG--ELGAPVGSWAACSISEAAYGALDHPVNGLEDSPLMNLQEVFKCHKATNSGDH 941
Query: 716 I-LLRLSRDLRNVHCGLEYGALLVKHHLETVELLQLTERYGVVFDSQIYHKIKHSKEALS 892
+ LL LS+ L+ LEY +L VK+HLE V L E +++D K +
Sbjct: 942 VGLLFLSKHLKKYRYSLEYASLEVKNHLERVNFSDLVETIMIIYDG--CDKTRKGG---- 995
Query: 893 FTSSPVLPWVIHFSLSKEKLREKGLEISKLLNILKEEYANTLSKFRNLKLPNI------L 1054
PW HF +SKE +++K L + ++ L +EY T ++ N +P++
Sbjct: 996 -------PWTTHFHISKEMMKKKRLGLGFVVEELTKEYDATRNQLNN-AIPSVHISKRKC 1047
Query: 1055 FMGSECCRNGCQYLCSNDKIFNSVCVHFVAETSS 1156
+G +C +N ++ C+ VA+ S
Sbjct: 1048 SVGDQCVQN------------SACCITLVAQAES 1069
>ref|XP_004970754.1| PREDICTED: DNA-directed RNA polymerase D subunit 1-like isoform X1
[Setaria italica] gi|514785102|ref|XP_004970757.1|
PREDICTED: DNA-directed RNA polymerase D subunit 1-like
isoform X4 [Setaria italica]
Length = 1451
Score = 177 bits (450), Expect = 6e-42
Identities = 127/394 (32%), Positives = 196/394 (49%), Gaps = 11/394 (2%)
Frame = +2
Query: 8 FRNIYSDIIKVVLDHTQVGNSMVAMVKSGSKGSFQKLVQQGAFLGIQFYRDRQNFPFGFP 187
F+++++D++K+V H NSM+ M+ +GSKGS K VQQ A +G+Q + FPF P
Sbjct: 718 FKDVFNDLLKMVQHHVSNDNSMMVMINAGSKGSMLKYVQQTACVGLQLPASK--FPFRIP 775
Query: 188 PKL----YRSFHTTVIPKESTSQASKCKHLQGSLESINYLGLIGSSFFEGLNPFEYFIHS 355
+L + + ESTS+ H++G N +I +SF EGLNP E +H+
Sbjct: 776 SQLSCVSWNRQKSLNCEAESTSE-----HVEGQ----NLYAVIRNSFIEGLNPLECLLHA 826
Query: 356 VSSRGNSFSQGADVPGXXXXXXXXXXXDIVVAYDGTVRNLYGNQIVQFSYSNHIQDNLEI 535
+S R N FS+ ADVPG D+ VAYDGTVR+ YG I+QFSY D++
Sbjct: 827 ISGRANFFSEHADVPGTLTRKLMYHLRDLHVAYDGTVRSSYGQHIMQFSYDT--ADDMCC 884
Query: 536 DSPEAGLHLAGEAMGALAASSLGEMAYGILEKQLPSGHSHPLQILQEILGSGQGKDCCKK 715
+ G G +G+ AA S+ E AYG L+ + PL LQE+ + +
Sbjct: 885 NHDLVG--ELGAPVGSWAACSISEAAYGALDHPVNGLEDSPLMNLQEVFKCHKATNSGDH 942
Query: 716 I-LLRLSRDLRNVHCGLEYGALLVKHHLETVELLQLTERYGVVFDSQIYHKIKHSKEALS 892
+ LL LS+ L+ LEY +L VK+HLE V L E +++D K +
Sbjct: 943 VGLLFLSKHLKKYRYSLEYASLEVKNHLERVNFSDLVETIMIIYDG--CDKTRKGG---- 996
Query: 893 FTSSPVLPWVIHFSLSKEKLREKGLEISKLLNILKEEYANTLSKFRNLKLPNI------L 1054
PW HF +SKE +++K L + ++ L +EY T ++ N +P++
Sbjct: 997 -------PWTTHFHISKEMMKKKRLGLGFVVEELTKEYDATRNQLNN-AIPSVHISKRKC 1048
Query: 1055 FMGSECCRNGCQYLCSNDKIFNSVCVHFVAETSS 1156
+G +C +N ++ C+ VA+ S
Sbjct: 1049 SVGDQCVQN------------SACCITLVAQAES 1070
>ref|XP_006300646.1| hypothetical protein CARUB_v10019657mg [Capsella rubella]
gi|482569356|gb|EOA33544.1| hypothetical protein
CARUB_v10019657mg [Capsella rubella]
Length = 1459
Score = 177 bits (449), Expect = 7e-42
Identities = 131/379 (34%), Positives = 194/379 (51%), Gaps = 4/379 (1%)
Frame = +2
Query: 8 FRNIYSDIIKVVLDHTQVGNSMVAMVKSGSKGSFQKLVQQGAFLGIQFYRDRQNFPFGFP 187
F++ Y DI + + NS + M K+GSKG+ KLVQ +G+Q FGFP
Sbjct: 712 FKDAYRDIQALAYRYGDQSNSFLIMSKAGSKGNIGKLVQHSMCIGLQ--NSAVALSFGFP 769
Query: 188 PKLY-RSFHTTVIPKESTSQASKCKHLQGSLESINYLGLIGSSFFEGLNPFEYFIHSVSS 364
KL +++ P S A K + ES G+I +SF GLNP E F+HSV+S
Sbjct: 770 RKLTCAAWNDPNSPLRSAKGADKT-----ATESYVPYGVIENSFLTGLNPLESFVHSVTS 824
Query: 365 RGNSFSQGADVPGXXXXXXXXXXXDIVVAYDGTVRNLYGNQIVQFSYSNHIQDNLEIDSP 544
R +SFS AD+PG DI AYDGTVRN +GNQ+VQF+Y E D P
Sbjct: 825 RDSSFSGNADLPGTLSRRLMFFMRDIYAAYDGTVRNSFGNQVVQFTY--------ETDGP 876
Query: 545 EAGLHLAGEAMGALAASSLGEMAYGILEKQLPSGHSHPLQILQEILGSGQGKDCCKK-IL 721
+ GEA+G+L+A +L E AY L++ + + PL L+ IL G K ++ I
Sbjct: 877 VE--EITGEALGSLSACALSEAAYSALDQPVSLLETSPLLNLKNILECGSKKGQREQTIS 934
Query: 722 LRLSRDLRNVHCGLEYGALLVKHHLETVELLQLTERYGVVFDSQIYHKIKHSKEALSFTS 901
L LS L G EYG+L +K++LE + ++ ++F + K
Sbjct: 935 LYLSETLSKKKHGFEYGSLEIKNYLEKLSFSEIVSTSMIIFSPRTNSK------------ 982
Query: 902 SPVLPWVIHFSLSKEKLREKGLEISKLLNILKEEYANTLSKFRNLKLPNILFMGSECCRN 1081
+P+ PWV HF +S++ L+ K L +++ L E Y+ S+ R LKL +++ + + C N
Sbjct: 983 APLSPWVCHFHISEKVLKRKQLNAESVVSSLNEHYS---SRNRELKL-DLVDLDIQ-CTN 1037
Query: 1082 GCQYLCSNDKIF--NSVCV 1132
C S+DK +S C+
Sbjct: 1038 HCP---SDDKAMTDDSFCI 1053
>gb|EMS66983.1| DNA-directed RNA polymerase D subunit 1 [Triticum urartu]
Length = 1402
Score = 174 bits (442), Expect = 5e-41
Identities = 122/338 (36%), Positives = 174/338 (51%), Gaps = 5/338 (1%)
Frame = +2
Query: 8 FRNIYSDIIKVVLDHTQVGNSMVAMVKSGSKGSFQKLVQQGAFLGIQFYRDRQNFPFGFP 187
F++++SD+ K+V HT NSM+ M +GSKGS K VQQ A +G+Q R FPF P
Sbjct: 695 FKSVFSDLQKMVQQHTAKNNSMMMMTNAGSKGSMLKFVQQTACVGLQLPASR--FPFRIP 752
Query: 188 PKLYRSFHTTVIPKESTSQASKCKHL-QGSLESI---NYLGLIGSSFFEGLNPFEYFIHS 355
+L S AS +H +G+ E + N +I +SF GLNP E +HS
Sbjct: 753 SEL--------------SCASWNRHKSEGTGECLGGQNLYAVIRNSFAGGLNPLECLLHS 798
Query: 356 VSSRGNSFSQGADVPGXXXXXXXXXXXDIVVAYDGTVRNLYGNQIVQFSYSNHIQDNLEI 535
+S R N FS+ ADVPG D+ VAYDGTVR+ YG QI+QF+Y +D
Sbjct: 799 ISGRANFFSENADVPGTLTRKLMYHLRDLYVAYDGTVRSSYGQQIMQFTYDT-AEDMCSD 857
Query: 536 DSPEAGLHLAGEAMGALAASSLGEMAYGILEKQLPSGHSHPLQILQEILGSGQGKDCCKK 715
+ E L G +G+ AA S+ E AYG L+ + S PL LQ++L +G
Sbjct: 858 RNVEGEL---GAPVGSWAACSISEAAYGALDHPVNSLEESPLMNLQDVLKCQKGGTSMDH 914
Query: 716 I-LLRLSRDLRNVHCGLEYGALLVKHHLETVELLQLTERYGVVFDSQIYHKIKHSKEALS 892
+ LL LS++L+ GLEY +L VK HLE V L + +++ K S
Sbjct: 915 VGLLFLSKNLKKYRYGLEYASLEVKDHLEPVNFSDLVDTVMILYGGCGIESTKGS----- 969
Query: 893 FTSSPVLPWVIHFSLSKEKLREKGLEISKLLNILKEEY 1006
W+ HF LS+E + +K L ++ ++ L E+Y
Sbjct: 970 -------AWITHFHLSQEMMTKKRLGLTLVVEELTEQY 1000
>ref|XP_002886441.1| NRPD1a [Arabidopsis lyrata subsp. lyrata] gi|297332282|gb|EFH62700.1|
NRPD1a [Arabidopsis lyrata subsp. lyrata]
Length = 1456
Score = 174 bits (441), Expect = 6e-41
Identities = 118/347 (34%), Positives = 177/347 (51%), Gaps = 2/347 (0%)
Frame = +2
Query: 8 FRNIYSDIIKVVLDHTQVGNSMVAMVKSGSKGSFQKLVQQGAFLGIQFYRDRQNFPFGFP 187
F++ Y D+ + + + NS + M K+GSKG+ KLVQ +G+Q + +GFP
Sbjct: 705 FKDAYRDVQALAYRYGEQSNSFLIMSKAGSKGNIGKLVQHSMCIGLQ--NSAVSLSYGFP 762
Query: 188 PKLYRSFHTTVIPKESTSQASKCKHLQGSL-ESINYLGLIGSSFFEGLNPFEYFIHSVSS 364
+L T + S K + ES G+I +SF GLNP E F+HSV+S
Sbjct: 763 REL-----TCASWNDPNSPLRGAKGEDSTATESYVPYGVIENSFLTGLNPLESFVHSVTS 817
Query: 365 RGNSFSQGADVPGXXXXXXXXXXXDIVVAYDGTVRNLYGNQIVQFSYSNHIQDNLEIDSP 544
R +SFS AD+PG DI AYDGTVRN +GNQ+VQF+Y E D P
Sbjct: 818 RDSSFSGNADLPGTLSRRLMFFMRDIYAAYDGTVRNSFGNQLVQFTY--------ETDGP 869
Query: 545 EAGLHLAGEAMGALAASSLGEMAYGILEKQLPSGHSHPLQILQEILGSGQGKDCCKKIL- 721
+ GEA+G+L+A +L E AY L++ + + PL L+ +L G K ++ +
Sbjct: 870 VE--DITGEALGSLSACALSEAAYSALDQPISLLETSPLLNLKNVLECGSKKGQREQTMT 927
Query: 722 LRLSRDLRNVHCGLEYGALLVKHHLETVELLQLTERYGVVFDSQIYHKIKHSKEALSFTS 901
L LS L G EYG+L +K+HLE + ++ ++F K+
Sbjct: 928 LYLSETLSKKKHGFEYGSLEIKNHLEKLSFSEIVSTSMIIFSPSTNTKV----------- 976
Query: 902 SPVLPWVIHFSLSKEKLREKGLEISKLLNILKEEYANTLSKFRNLKL 1042
P+ PWV HF +S++ L+ K L + +++ L E+Y S+ R LKL
Sbjct: 977 -PLSPWVCHFHISEKVLKRKQLNVESVVSSLNEQYK---SRNRELKL 1019
>ref|NP_176490.2| DNA-directed RNA polymerase IV subunit 1 [Arabidopsis thaliana]
gi|334183598|ref|NP_001185298.1| DNA-directed RNA
polymerase IV subunit 1 [Arabidopsis thaliana]
gi|75335311|sp|Q9LQ02.1|NRPD1_ARATH RecName:
Full=DNA-directed RNA polymerase IV subunit 1; AltName:
Full=DNA-directed RNA polymerase D subunit 1;
Short=AtNRPD1a; Short=Nuclear RNA polymerase D 1a;
AltName: Full=Protein RNA-DIRECTED DNA METHYLATION
DEFECTIVE 3; AltName: Full=Protein SILENCING DEFECTIVE 4;
AltName: Full=Protein SILENCING MOVEMENT DEFICIENT 2;
AltName: Full=RNA polymerase IV subunit 1a; Short=POL IV
1a gi|8493592|gb|AAF75815.1|AC011000_18 Contains
similarity to DNA-directed RNA Polymerase alpha-subunit
from Methanococcus jannaschii gi|3915860 and contains
Ribosomal protein L36 PF|00444 and RNA-Polymerase
alpha-subunit PF|00623 domains. EST gb|AA597311 comes
from this gene [Arabidopsis thaliana]
gi|12323252|gb|AAG51604.1|AC010795_8 RNA polymerase IIA
largest subunit, putative; 12353-6556 [Arabidopsis
thaliana] gi|59939208|gb|AAX12372.1| DNA-directed RNA
polymerase beta subunit [Arabidopsis thaliana]
gi|68300852|gb|AAY89363.1| RNA polymerase IV largest
subunit [Arabidopsis thaliana]
gi|332195920|gb|AEE34041.1| nuclear RNA polymerase D1A
[Arabidopsis thaliana] gi|332195921|gb|AEE34042.1|
nuclear RNA polymerase D1A [Arabidopsis thaliana]
Length = 1453
Score = 173 bits (439), Expect = 1e-40
Identities = 120/347 (34%), Positives = 175/347 (50%), Gaps = 2/347 (0%)
Frame = +2
Query: 8 FRNIYSDIIKVVLDHTQVGNSMVAMVKSGSKGSFQKLVQQGAFLGIQFYRDRQNFPFGFP 187
F++ Y D+ + + NS + M K+GSKG+ KLVQ +G+Q + FGFP
Sbjct: 704 FKDAYRDVQALAYRYGDQSNSFLIMSKAGSKGNIGKLVQHSMCIGLQ--NSAVSLSFGFP 761
Query: 188 PKLYRSFHTTVIPKESTSQASKCKHLQGSL-ESINYLGLIGSSFFEGLNPFEYFIHSVSS 364
+L T + S K + ES G+I +SF GLNP E F+HSV+S
Sbjct: 762 REL-----TCAAWNDPNSPLRGAKGKDSTTTESYVPYGVIENSFLTGLNPLESFVHSVTS 816
Query: 365 RGNSFSQGADVPGXXXXXXXXXXXDIVVAYDGTVRNLYGNQIVQFSYSNHIQDNLEIDSP 544
R +SFS AD+PG DI AYDGTVRN +GNQ+VQF+Y E D P
Sbjct: 817 RDSSFSGNADLPGTLSRRLMFFMRDIYAAYDGTVRNSFGNQLVQFTY--------ETDGP 868
Query: 545 EAGLHLAGEAMGALAASSLGEMAYGILEKQLPSGHSHPLQILQEILGSGQGKDCCKKIL- 721
+ GEA+G+L+A +L E AY L++ + + PL L+ +L G K ++ +
Sbjct: 869 VE--DITGEALGSLSACALSEAAYSALDQPISLLETSPLLNLKNVLECGSKKGQREQTMS 926
Query: 722 LRLSRDLRNVHCGLEYGALLVKHHLETVELLQLTERYGVVFDSQIYHKIKHSKEALSFTS 901
L LS L G EYG+L +K+HLE + ++ ++F S T
Sbjct: 927 LYLSEYLSKKKHGFEYGSLEIKNHLEKLSFSEIVSTSMIIFSPS------------SNTK 974
Query: 902 SPVLPWVIHFSLSKEKLREKGLEISKLLNILKEEYANTLSKFRNLKL 1042
P+ PWV HF +S++ L+ K L +++ L E+Y S+ R LKL
Sbjct: 975 VPLSPWVCHFHISEKVLKRKQLSAESVVSSLNEQYK---SRNRELKL 1018
>ref|XP_006477376.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1-like isoform X2
[Citrus sinensis] gi|568847098|ref|XP_006477377.1|
PREDICTED: DNA-directed RNA polymerase IV subunit 1-like
isoform X3 [Citrus sinensis]
gi|568847100|ref|XP_006477378.1| PREDICTED: DNA-directed
RNA polymerase IV subunit 1-like isoform X4 [Citrus
sinensis]
Length = 1443
Score = 170 bits (430), Expect = 1e-39
Identities = 117/367 (31%), Positives = 184/367 (50%), Gaps = 1/367 (0%)
Frame = +2
Query: 8 FRNIYSDIIKVVLDHTQVGNSMVAMVKSGSKGSFQKLVQQGAFLGIQFYRDRQNFPFGFP 187
F++++ DI + + NS++AM K+GSKG+ KLVQ LG+Q F FP
Sbjct: 703 FKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQ--HSLAPLSFRFP 760
Query: 188 PKLYRSFHTTVIPKESTSQASKCKHLQGSLESINYLGLIGSSFFEGLNPFEYFIHSVSSR 367
+L + + ++T A +S ++ +SF GLNP E FIHSV+SR
Sbjct: 761 HELSCAAWNRLRAGDNTECA----------KSYIPSAVVANSFLTGLNPLECFIHSVTSR 810
Query: 368 GNSFSQGADVPGXXXXXXXXXXXDIVVAYDGTVRNLYGNQIVQFSYSNHIQDNLEIDSPE 547
+SFS AD+PG D+ AYDGTVRN YGNQIVQFSY N+E S
Sbjct: 811 DSSFSDNADLPGTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSY------NIEGTSTP 864
Query: 548 AGLHLAGEAMGALAASSLGEMAYGILEKQLPSGHSHPLQILQEILGSGQGKDCCKKIL-L 724
G + G+++G+L+A ++ E AY L++ + + PL L+ +L G K + + L
Sbjct: 865 TG-EIGGQSVGSLSACAISEAAYSALDQPISLLETSPLLNLKNVLECGSKKSNADQTMSL 923
Query: 725 RLSRDLRNVHCGLEYGALLVKHHLETVELLQLTERYGVVFDSQIYHKIKHSKEALSFTSS 904
LS L G EYGAL VK+HLE + L + +++ Q +KH
Sbjct: 924 FLSNKLGKRRHGFEYGALEVKNHLECLMLSDIVSTSMIIYSPQT-GSMKHFS-------- 974
Query: 905 PVLPWVIHFSLSKEKLREKGLEISKLLNILKEEYANTLSKFRNLKLPNILFMGSECCRNG 1084
PW+ HF + KE ++ GL+ +++ L + ++ + + +P++L +C
Sbjct: 975 ---PWICHFHVRKEIMKRTGLKEHSIIDSLYRQCKAARTELK-ISVPDMLISNKDCSSIN 1030
Query: 1085 CQYLCSN 1105
Q C++
Sbjct: 1031 MQKECND 1037
>ref|XP_006477375.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1-like isoform X1
[Citrus sinensis]
Length = 1481
Score = 170 bits (430), Expect = 1e-39
Identities = 117/367 (31%), Positives = 184/367 (50%), Gaps = 1/367 (0%)
Frame = +2
Query: 8 FRNIYSDIIKVVLDHTQVGNSMVAMVKSGSKGSFQKLVQQGAFLGIQFYRDRQNFPFGFP 187
F++++ DI + + NS++AM K+GSKG+ KLVQ LG+Q F FP
Sbjct: 741 FKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQ--HSLAPLSFRFP 798
Query: 188 PKLYRSFHTTVIPKESTSQASKCKHLQGSLESINYLGLIGSSFFEGLNPFEYFIHSVSSR 367
+L + + ++T A +S ++ +SF GLNP E FIHSV+SR
Sbjct: 799 HELSCAAWNRLRAGDNTECA----------KSYIPSAVVANSFLTGLNPLECFIHSVTSR 848
Query: 368 GNSFSQGADVPGXXXXXXXXXXXDIVVAYDGTVRNLYGNQIVQFSYSNHIQDNLEIDSPE 547
+SFS AD+PG D+ AYDGTVRN YGNQIVQFSY N+E S
Sbjct: 849 DSSFSDNADLPGTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSY------NIEGTSTP 902
Query: 548 AGLHLAGEAMGALAASSLGEMAYGILEKQLPSGHSHPLQILQEILGSGQGKDCCKKIL-L 724
G + G+++G+L+A ++ E AY L++ + + PL L+ +L G K + + L
Sbjct: 903 TG-EIGGQSVGSLSACAISEAAYSALDQPISLLETSPLLNLKNVLECGSKKSNADQTMSL 961
Query: 725 RLSRDLRNVHCGLEYGALLVKHHLETVELLQLTERYGVVFDSQIYHKIKHSKEALSFTSS 904
LS L G EYGAL VK+HLE + L + +++ Q +KH
Sbjct: 962 FLSNKLGKRRHGFEYGALEVKNHLECLMLSDIVSTSMIIYSPQT-GSMKHFS-------- 1012
Query: 905 PVLPWVIHFSLSKEKLREKGLEISKLLNILKEEYANTLSKFRNLKLPNILFMGSECCRNG 1084
PW+ HF + KE ++ GL+ +++ L + ++ + + +P++L +C
Sbjct: 1013 ---PWICHFHVRKEIMKRTGLKEHSIIDSLYRQCKAARTELK-ISVPDMLISNKDCSSIN 1068
Query: 1085 CQYLCSN 1105
Q C++
Sbjct: 1069 MQKECND 1075
>ref|XP_002275898.2| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase D subunit
1-like [Vitis vinifera]
Length = 1560
Score = 168 bits (426), Expect = 3e-39
Identities = 115/361 (31%), Positives = 180/361 (49%), Gaps = 4/361 (1%)
Frame = +2
Query: 2 CEFRNIYSDIIKVVLDHTQVGNSMVAMVKSGSKGSFQKLVQQGAFLGIQFYRDRQNFPFG 181
C F+ + DI +V + NS++AM+K+GSKG+ KLVQQG LG+Q F
Sbjct: 735 CAFKQKFRDIQNLVYQYANKDNSLLAMLKAGSKGNLLKLVQQGLCLGLQ--HSLVPLSFK 792
Query: 182 FPPKLY-RSFHTTVIPKESTSQASKCKHLQGSLESINYLGLIGSSFFEGLNPFEYFIHSV 358
P +L +++ +P + S+ ES ++ +SF GLNP E F+HSV
Sbjct: 793 IPHQLSCAAWNKQKVPGLIQNDTSEYA------ESYIPYAVVENSFLMGLNPLECFVHSV 846
Query: 359 SSRGNSFSQGADVPGXXXXXXXXXXXDIVVAYDGTVRNLYGNQIVQFSYS-NHIQDNLE- 532
+SR +SFS AD+PG D+ +AYDGTVRN YGNQ+VQFSY+ H +
Sbjct: 847 TSRDSSFSDNADLPGTLTRRLMFFMRDLYIAYDGTVRNAYGNQLVQFSYNIEHTSTPSDG 906
Query: 533 IDSPEAGLHLAGEAMGALAASSLGEMAYGILEKQLPSGHSHPLQILQEILGSGQGKDCC- 709
I+ + G+ +G+++A ++ E AY L++ + PL L+ +L G K
Sbjct: 907 INEDTCAYDMGGQPVGSISACAISEAAYSALDQPISLLEPSPLLNLKRVLECGLRKSTAD 966
Query: 710 KKILLRLSRDLRNVHCGLEYGALLVKHHLETVELLQLTERYGVVFDSQIYHKIKHSKEAL 889
+ + L LS+ L G EYGAL VK+HLE + + +VF Q K S
Sbjct: 967 RTVSLFLSKKLEKRKHGFEYGALEVKNHLEKLLFSDIVSTVMIVFSPQNGSKTHFS---- 1022
Query: 890 SFTSSPVLPWVIHFSLSKEKLREKGLEISKLLNILKEEYANTLSKFRNLKLPNILFMGSE 1069
PWV HF + +E +++ L+ +++ L + N+ + LP++ +
Sbjct: 1023 --------PWVCHFHVCEEIAKKRSLKPHSIIDALYMK-CNSARAESKINLPDLQITSKD 1073
Query: 1070 C 1072
C
Sbjct: 1074 C 1074