BLASTX nr result
ID: Ephedra25_contig00012857
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Ephedra25_contig00012857
(934 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002886430.1| hypothetical protein ARALYDRAFT_475032 [Arab... 54 3e-08
ref|XP_002509739.1| replication factor C / DNA polymerase III ga... 54 3e-08
ref|XP_002283246.1| PREDICTED: replication factor C subunit 2 [V... 55 3e-08
ref|NP_176504.1| replication factor C 2 [Arabidopsis thaliana] g... 53 3e-08
gb|EOY24643.1| Replication factor C / DNA polymerase III gamma-t... 53 4e-08
gb|EOY24642.1| Replication factor C 2 isoform 1 [Theobroma cacao... 53 4e-08
ref|XP_006652657.1| PREDICTED: replication factor C subunit 4-li... 56 6e-08
gb|AFK40126.1| unknown [Medicago truncatula] 54 6e-08
ref|XP_006391776.1| hypothetical protein EUTSA_v10023584mg [Eutr... 53 6e-08
gb|EMJ01585.1| hypothetical protein PRUPE_ppa008426mg [Prunus pe... 53 6e-08
ref|XP_006358877.1| PREDICTED: replication factor C subunit 2-li... 53 6e-08
ref|XP_006857848.1| hypothetical protein AMTR_s00069p00063160 [A... 51 6e-08
ref|XP_006599948.1| PREDICTED: replication factor C subunit 2-li... 55 7e-08
ref|XP_004147970.1| PREDICTED: replication factor C subunit 2-li... 54 8e-08
ref|XP_006302449.1| hypothetical protein CARUB_v10020535mg, part... 52 1e-07
ref|XP_004976529.1| PREDICTED: replication factor C subunit 2-li... 55 1e-07
ref|XP_002446951.1| hypothetical protein SORBIDRAFT_06g025740 [S... 55 1e-07
ref|NP_001149058.1| LOC100282678 [Zea mays] gi|195624372|gb|ACG3... 55 1e-07
gb|ACF87138.1| unknown [Zea mays] 55 1e-07
ref|XP_004245638.1| PREDICTED: replication factor C subunit 2-li... 52 1e-07
>ref|XP_002886430.1| hypothetical protein ARALYDRAFT_475032 [Arabidopsis lyrata subsp.
lyrata] gi|297332271|gb|EFH62689.1| hypothetical protein
ARALYDRAFT_475032 [Arabidopsis lyrata subsp. lyrata]
Length = 334
Score = 54.3 bits (129), Expect(2) = 3e-08
Identities = 27/47 (57%), Positives = 33/47 (70%)
Frame = +3
Query: 738 IIDNSETISHLRIITMDKHMSNLILSRSPGPRKTTSILALAHELWQP 878
I+ N + +S L++I D +M NLILS PG KTTSILALAHEL P
Sbjct: 30 IVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELLGP 76
Score = 31.2 bits (69), Expect(2) = 3e-08
Identities = 13/21 (61%), Positives = 18/21 (85%)
Frame = +1
Query: 871 GSHFKFAIMELNAFDDRGINV 933
G ++K A++ELNA DDRGI+V
Sbjct: 75 GPNYKEAVLELNASDDRGIDV 95
>ref|XP_002509739.1| replication factor C / DNA polymerase III gamma-tau subunit,
putative [Ricinus communis] gi|223549638|gb|EEF51126.1|
replication factor C / DNA polymerase III gamma-tau
subunit, putative [Ricinus communis]
Length = 333
Score = 54.3 bits (129), Expect(2) = 3e-08
Identities = 27/47 (57%), Positives = 33/47 (70%)
Frame = +3
Query: 738 IIDNSETISHLRIITMDKHMSNLILSRSPGPRKTTSILALAHELWQP 878
I+ N + +S L++I D +M NLILS PG KTTSILALAHEL P
Sbjct: 29 IVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELLGP 75
Score = 31.2 bits (69), Expect(2) = 3e-08
Identities = 13/21 (61%), Positives = 18/21 (85%)
Frame = +1
Query: 871 GSHFKFAIMELNAFDDRGINV 933
G ++K A++ELNA DDRGI+V
Sbjct: 74 GPNYKEAVLELNASDDRGIDV 94
>ref|XP_002283246.1| PREDICTED: replication factor C subunit 2 [Vitis vinifera]
gi|297742576|emb|CBI34725.3| unnamed protein product
[Vitis vinifera]
Length = 330
Score = 54.7 bits (130), Expect(2) = 3e-08
Identities = 26/44 (59%), Positives = 33/44 (75%)
Frame = +3
Query: 738 IIDNSETISHLRIITMDKHMSNLILSRSPGPRKTTSILALAHEL 869
I+ N +T+S L++I D +M NLILS PG KTTS+LALAHEL
Sbjct: 26 IVGNEDTVSRLQVIARDGNMPNLILSGPPGTGKTTSVLALAHEL 69
Score = 30.8 bits (68), Expect(2) = 3e-08
Identities = 12/21 (57%), Positives = 19/21 (90%)
Frame = +1
Query: 871 GSHFKFAIMELNAFDDRGINV 933
G++++ A++ELNA DDRGI+V
Sbjct: 71 GANYREAVLELNASDDRGIDV 91
>ref|NP_176504.1| replication factor C 2 [Arabidopsis thaliana]
gi|75169912|sp|Q9CAM7.1|RFC2_ARATH RecName:
Full=Replication factor C subunit 2; Short=AtRFC2;
AltName: Full=Activator 1 subunit 2; AltName:
Full=Protein EMBRYO DEFECTIVE 2811
gi|12323266|gb|AAG51618.1|AC010795_22 replication
factor, putative; 74998-73295 [Arabidopsis thaliana]
gi|182623790|gb|ACB88833.1| At1g63160 [Arabidopsis
thaliana] gi|332195942|gb|AEE34063.1| replication factor
C 2 [Arabidopsis thaliana]
Length = 333
Score = 53.1 bits (126), Expect(2) = 3e-08
Identities = 26/44 (59%), Positives = 32/44 (72%)
Frame = +3
Query: 738 IIDNSETISHLRIITMDKHMSNLILSRSPGPRKTTSILALAHEL 869
I+ N + +S L++I D +M NLILS PG KTTSILALAHEL
Sbjct: 29 IVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHEL 72
Score = 32.0 bits (71), Expect(2) = 3e-08
Identities = 13/21 (61%), Positives = 19/21 (90%)
Frame = +1
Query: 871 GSHFKFAIMELNAFDDRGINV 933
G+++K A++ELNA DDRGI+V
Sbjct: 74 GTNYKEAVLELNASDDRGIDV 94
>gb|EOY24643.1| Replication factor C / DNA polymerase III gamma-tau subunit isoform
2 [Theobroma cacao]
Length = 393
Score = 52.8 bits (125), Expect(2) = 4e-08
Identities = 26/44 (59%), Positives = 32/44 (72%)
Frame = +3
Query: 738 IIDNSETISHLRIITMDKHMSNLILSRSPGPRKTTSILALAHEL 869
I+ N + +S L++I D +M NLILS PG KTTSILALAHEL
Sbjct: 28 IVGNEDAVSRLQVIAHDGNMPNLILSGPPGTGKTTSILALAHEL 71
Score = 32.0 bits (71), Expect(2) = 4e-08
Identities = 13/21 (61%), Positives = 19/21 (90%)
Frame = +1
Query: 871 GSHFKFAIMELNAFDDRGINV 933
G+++K A++ELNA DDRGI+V
Sbjct: 73 GTNYKEAVLELNASDDRGIDV 93
>gb|EOY24642.1| Replication factor C 2 isoform 1 [Theobroma cacao]
gi|508777388|gb|EOY24644.1| Replication factor C 2
isoform 1 [Theobroma cacao]
Length = 332
Score = 52.8 bits (125), Expect(2) = 4e-08
Identities = 26/44 (59%), Positives = 32/44 (72%)
Frame = +3
Query: 738 IIDNSETISHLRIITMDKHMSNLILSRSPGPRKTTSILALAHEL 869
I+ N + +S L++I D +M NLILS PG KTTSILALAHEL
Sbjct: 28 IVGNEDAVSRLQVIAHDGNMPNLILSGPPGTGKTTSILALAHEL 71
Score = 32.0 bits (71), Expect(2) = 4e-08
Identities = 13/21 (61%), Positives = 19/21 (90%)
Frame = +1
Query: 871 GSHFKFAIMELNAFDDRGINV 933
G+++K A++ELNA DDRGI+V
Sbjct: 73 GTNYKEAVLELNASDDRGIDV 93
>ref|XP_006652657.1| PREDICTED: replication factor C subunit 4-like [Oryza brachyantha]
Length = 335
Score = 55.8 bits (133), Expect(2) = 6e-08
Identities = 28/51 (54%), Positives = 34/51 (66%)
Frame = +3
Query: 726 RFEGIIDNSETISHLRIITMDKHMSNLILSRSPGPRKTTSILALAHELWQP 878
R ++ NS+ +S L +I D +M NLILS PG KTTSILALAHEL P
Sbjct: 28 RVADVVGNSDAVSRLEVIARDGNMPNLILSGPPGTGKTTSILALAHELLGP 78
Score = 28.5 bits (62), Expect(2) = 6e-08
Identities = 11/21 (52%), Positives = 17/21 (80%)
Frame = +1
Query: 871 GSHFKFAIMELNAFDDRGINV 933
G ++ A++ELNA DDRG++V
Sbjct: 77 GPSYREAVLELNASDDRGLDV 97
>gb|AFK40126.1| unknown [Medicago truncatula]
Length = 333
Score = 54.3 bits (129), Expect(2) = 6e-08
Identities = 27/47 (57%), Positives = 33/47 (70%)
Frame = +3
Query: 738 IIDNSETISHLRIITMDKHMSNLILSRSPGPRKTTSILALAHELWQP 878
I+ N + +S L++I D +M NLILS PG KTTSILALAHEL P
Sbjct: 29 IVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELLGP 75
Score = 30.0 bits (66), Expect(2) = 6e-08
Identities = 12/21 (57%), Positives = 18/21 (85%)
Frame = +1
Query: 871 GSHFKFAIMELNAFDDRGINV 933
G +++ A++ELNA DDRGI+V
Sbjct: 74 GPNYREAVLELNASDDRGIDV 94
>ref|XP_006391776.1| hypothetical protein EUTSA_v10023584mg [Eutrema salsugineum]
gi|557088282|gb|ESQ29062.1| hypothetical protein
EUTSA_v10023584mg [Eutrema salsugineum]
Length = 333
Score = 53.1 bits (126), Expect(2) = 6e-08
Identities = 26/47 (55%), Positives = 33/47 (70%)
Frame = +3
Query: 738 IIDNSETISHLRIITMDKHMSNLILSRSPGPRKTTSILALAHELWQP 878
I+ N + +S L++I D +M NLIL+ PG KTTSILALAHEL P
Sbjct: 29 IVGNEDAVSRLQVIARDGNMPNLILAGPPGTGKTTSILALAHELLGP 75
Score = 31.2 bits (69), Expect(2) = 6e-08
Identities = 13/21 (61%), Positives = 18/21 (85%)
Frame = +1
Query: 871 GSHFKFAIMELNAFDDRGINV 933
G ++K A++ELNA DDRGI+V
Sbjct: 74 GPNYKEAVLELNASDDRGIDV 94
>gb|EMJ01585.1| hypothetical protein PRUPE_ppa008426mg [Prunus persica]
Length = 332
Score = 53.1 bits (126), Expect(2) = 6e-08
Identities = 26/47 (55%), Positives = 33/47 (70%)
Frame = +3
Query: 738 IIDNSETISHLRIITMDKHMSNLILSRSPGPRKTTSILALAHELWQP 878
I+ N + +S L++I D +M NLIL+ PG KTTSILALAHEL P
Sbjct: 28 IVGNEDAVSRLQVIARDGNMPNLILAGPPGTGKTTSILALAHELLGP 74
Score = 31.2 bits (69), Expect(2) = 6e-08
Identities = 13/21 (61%), Positives = 18/21 (85%)
Frame = +1
Query: 871 GSHFKFAIMELNAFDDRGINV 933
G ++K A++ELNA DDRGI+V
Sbjct: 73 GPNYKEAVLELNASDDRGIDV 93
>ref|XP_006358877.1| PREDICTED: replication factor C subunit 2-like [Solanum tuberosum]
Length = 331
Score = 53.1 bits (126), Expect(2) = 6e-08
Identities = 26/47 (55%), Positives = 33/47 (70%)
Frame = +3
Query: 738 IIDNSETISHLRIITMDKHMSNLILSRSPGPRKTTSILALAHELWQP 878
I+ N + +S L++I D +M NLIL+ PG KTTSILALAHEL P
Sbjct: 27 IVGNEDAVSRLQVIARDGNMPNLILAGPPGTGKTTSILALAHELLGP 73
Score = 31.2 bits (69), Expect(2) = 6e-08
Identities = 13/21 (61%), Positives = 18/21 (85%)
Frame = +1
Query: 871 GSHFKFAIMELNAFDDRGINV 933
G ++K A++ELNA DDRGI+V
Sbjct: 72 GPNYKEAVLELNASDDRGIDV 92
>ref|XP_006857848.1| hypothetical protein AMTR_s00069p00063160 [Amborella trichopoda]
gi|548861950|gb|ERN19315.1| hypothetical protein
AMTR_s00069p00063160 [Amborella trichopoda]
Length = 331
Score = 51.2 bits (121), Expect(2) = 6e-08
Identities = 24/44 (54%), Positives = 32/44 (72%)
Frame = +3
Query: 738 IIDNSETISHLRIITMDKHMSNLILSRSPGPRKTTSILALAHEL 869
++ N + +S L++I D +M NLILS PG KT+SILALAHEL
Sbjct: 27 VVGNQDAVSRLQVIARDGNMPNLILSGPPGTGKTSSILALAHEL 70
Score = 33.1 bits (74), Expect(2) = 6e-08
Identities = 14/21 (66%), Positives = 19/21 (90%)
Frame = +1
Query: 871 GSHFKFAIMELNAFDDRGINV 933
G++FK A++ELNA DDRGI+V
Sbjct: 72 GTNFKEAVLELNASDDRGIDV 92
>ref|XP_006599948.1| PREDICTED: replication factor C subunit 2-like [Glycine max]
Length = 122
Score = 55.1 bits (131), Expect(2) = 7e-08
Identities = 26/44 (59%), Positives = 33/44 (75%)
Frame = +3
Query: 738 IIDNSETISHLRIITMDKHMSNLILSRSPGPRKTTSILALAHEL 869
I+DN +T+S L++I D +M NLIL PG KTTSI+ALAHEL
Sbjct: 26 IVDNEDTVSRLQVIARDDNMPNLILFGPPGTGKTTSIIALAHEL 69
Score = 29.3 bits (64), Expect(2) = 7e-08
Identities = 12/21 (57%), Positives = 18/21 (85%)
Frame = +1
Query: 871 GSHFKFAIMELNAFDDRGINV 933
G ++K A++ELNA +DRGI+V
Sbjct: 72 GPNYKEAVLELNASNDRGIDV 92
>ref|XP_004147970.1| PREDICTED: replication factor C subunit 2-like [Cucumis sativus]
gi|449494241|ref|XP_004159490.1| PREDICTED: replication
factor C subunit 2-like [Cucumis sativus]
Length = 331
Score = 54.3 bits (129), Expect(2) = 8e-08
Identities = 27/47 (57%), Positives = 33/47 (70%)
Frame = +3
Query: 738 IIDNSETISHLRIITMDKHMSNLILSRSPGPRKTTSILALAHELWQP 878
I+ N + +S L++I D +M NLILS PG KTTSILALAHEL P
Sbjct: 27 IVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELLGP 73
Score = 29.6 bits (65), Expect(2) = 8e-08
Identities = 12/21 (57%), Positives = 17/21 (80%)
Frame = +1
Query: 871 GSHFKFAIMELNAFDDRGINV 933
G ++K ++ELNA DDRGI+V
Sbjct: 72 GPNYKEGVLELNASDDRGIDV 92
>ref|XP_006302449.1| hypothetical protein CARUB_v10020535mg, partial [Capsella rubella]
gi|482571159|gb|EOA35347.1| hypothetical protein
CARUB_v10020535mg, partial [Capsella rubella]
Length = 360
Score = 52.0 bits (123), Expect(2) = 1e-07
Identities = 25/44 (56%), Positives = 32/44 (72%)
Frame = +3
Query: 738 IIDNSETISHLRIITMDKHMSNLILSRSPGPRKTTSILALAHEL 869
I+ N + +S L++I D +M NLIL+ PG KTTSILALAHEL
Sbjct: 56 IVGNEDAVSRLQVIARDGNMPNLILAGPPGTGKTTSILALAHEL 99
Score = 31.6 bits (70), Expect(2) = 1e-07
Identities = 13/21 (61%), Positives = 18/21 (85%)
Frame = +1
Query: 871 GSHFKFAIMELNAFDDRGINV 933
G ++K A++ELNA DDRGI+V
Sbjct: 101 GKNYKEAVLELNASDDRGIDV 121
>ref|XP_004976529.1| PREDICTED: replication factor C subunit 2-like [Setaria italica]
Length = 336
Score = 54.7 bits (130), Expect(2) = 1e-07
Identities = 27/51 (52%), Positives = 34/51 (66%)
Frame = +3
Query: 726 RFEGIIDNSETISHLRIITMDKHMSNLILSRSPGPRKTTSILALAHELWQP 878
R ++ NS+ ++ L +I D +M NLILS PG KTTSILALAHEL P
Sbjct: 28 RVADVVGNSDAVARLEVIARDGNMPNLILSGPPGTGKTTSILALAHELLGP 78
Score = 28.5 bits (62), Expect(2) = 1e-07
Identities = 11/21 (52%), Positives = 17/21 (80%)
Frame = +1
Query: 871 GSHFKFAIMELNAFDDRGINV 933
G ++ A++ELNA DDRG++V
Sbjct: 77 GPSYREAVLELNASDDRGLDV 97
>ref|XP_002446951.1| hypothetical protein SORBIDRAFT_06g025740 [Sorghum bicolor]
gi|241938134|gb|EES11279.1| hypothetical protein
SORBIDRAFT_06g025740 [Sorghum bicolor]
Length = 333
Score = 54.7 bits (130), Expect(2) = 1e-07
Identities = 27/51 (52%), Positives = 34/51 (66%)
Frame = +3
Query: 726 RFEGIIDNSETISHLRIITMDKHMSNLILSRSPGPRKTTSILALAHELWQP 878
R ++ NS+ ++ L +I D +M NLILS PG KTTSILALAHEL P
Sbjct: 25 RVADVVGNSDAVARLEVIARDGNMPNLILSGPPGTGKTTSILALAHELLGP 75
Score = 28.5 bits (62), Expect(2) = 1e-07
Identities = 11/21 (52%), Positives = 17/21 (80%)
Frame = +1
Query: 871 GSHFKFAIMELNAFDDRGINV 933
G ++ A++ELNA DDRG++V
Sbjct: 74 GPSYREAVLELNASDDRGLDV 94
>ref|NP_001149058.1| LOC100282678 [Zea mays] gi|195624372|gb|ACG34016.1| replication
factor C subunit 4 [Zea mays]
Length = 331
Score = 54.7 bits (130), Expect(2) = 1e-07
Identities = 27/51 (52%), Positives = 34/51 (66%)
Frame = +3
Query: 726 RFEGIIDNSETISHLRIITMDKHMSNLILSRSPGPRKTTSILALAHELWQP 878
R ++ NS+ ++ L +I D +M NLILS PG KTTSILALAHEL P
Sbjct: 23 RVADVVGNSDAVARLEVIARDGNMPNLILSGPPGTGKTTSILALAHELLGP 73
Score = 28.5 bits (62), Expect(2) = 1e-07
Identities = 11/21 (52%), Positives = 17/21 (80%)
Frame = +1
Query: 871 GSHFKFAIMELNAFDDRGINV 933
G ++ A++ELNA DDRG++V
Sbjct: 72 GPSYRDAVLELNASDDRGLDV 92
>gb|ACF87138.1| unknown [Zea mays]
Length = 331
Score = 54.7 bits (130), Expect(2) = 1e-07
Identities = 27/51 (52%), Positives = 34/51 (66%)
Frame = +3
Query: 726 RFEGIIDNSETISHLRIITMDKHMSNLILSRSPGPRKTTSILALAHELWQP 878
R ++ NS+ ++ L +I D +M NLILS PG KTTSILALAHEL P
Sbjct: 23 RVADVVGNSDAVARLEVIARDGNMPNLILSGPPGTGKTTSILALAHELLGP 73
Score = 28.5 bits (62), Expect(2) = 1e-07
Identities = 11/21 (52%), Positives = 17/21 (80%)
Frame = +1
Query: 871 GSHFKFAIMELNAFDDRGINV 933
G ++ A++ELNA DDRG++V
Sbjct: 72 GPSYRDAVLELNASDDRGLDV 92
>ref|XP_004245638.1| PREDICTED: replication factor C subunit 2-like [Solanum
lycopersicum]
Length = 331
Score = 52.0 bits (123), Expect(2) = 1e-07
Identities = 25/47 (53%), Positives = 33/47 (70%)
Frame = +3
Query: 738 IIDNSETISHLRIITMDKHMSNLILSRSPGPRKTTSILALAHELWQP 878
I+ N + ++ L++I D +M NLIL+ PG KTTSILALAHEL P
Sbjct: 27 IVGNEDAVARLQVIARDGNMPNLILAGPPGTGKTTSILALAHELLGP 73
Score = 31.2 bits (69), Expect(2) = 1e-07
Identities = 13/21 (61%), Positives = 18/21 (85%)
Frame = +1
Query: 871 GSHFKFAIMELNAFDDRGINV 933
G ++K A++ELNA DDRGI+V
Sbjct: 72 GPNYKEAVLELNASDDRGIDV 92