BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ephedra25_contig00012582
         (510 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_001753833.1| predicted protein [Physcomitrella patens] gi...   262   4e-68
ref|XP_002964905.1| hypothetical protein SELMODRAFT_167316 [Sela...   260   2e-67
ref|XP_002986487.1| hypothetical protein SELMODRAFT_182414 [Sela...   260   2e-67
gb|EXB29767.1| hypothetical protein L484_008930 [Morus notabilis]     258   7e-67
ref|NP_177623.1| plastid transcriptionally active 2 [Arabidopsis...   257   1e-66
ref|XP_006476695.1| PREDICTED: pentatricopeptide repeat-containi...   257   1e-66
gb|EMJ11568.1| hypothetical protein PRUPE_ppa001337mg [Prunus pe...   256   2e-66
ref|XP_002888995.1| hypothetical protein ARALYDRAFT_476621 [Arab...   256   2e-66
ref|XP_002280557.1| PREDICTED: pentatricopeptide repeat-containi...   256   2e-66
ref|XP_002322139.2| hypothetical protein POPTR_0015s08030g [Popu...   256   3e-66
ref|XP_006300609.1| hypothetical protein CARUB_v10019779mg [Caps...   256   3e-66
ref|XP_006344988.1| PREDICTED: pentatricopeptide repeat-containi...   255   4e-66
ref|XP_006439718.1| hypothetical protein CICLE_v10018817mg [Citr...   255   4e-66
ref|XP_006390383.1| hypothetical protein EUTSA_v10018112mg [Eutr...   255   4e-66
ref|XP_004157803.1| PREDICTED: pentatricopeptide repeat-containi...   254   6e-66
ref|XP_004152453.1| PREDICTED: pentatricopeptide repeat-containi...   254   6e-66
ref|XP_004236160.1| PREDICTED: pentatricopeptide repeat-containi...   254   8e-66
gb|EOY20557.1| Plastid transcriptionally active 2 isoform 3 [The...   253   1e-65
gb|EOY20556.1| Plastid transcriptionally active 2 isoform 2 [The...   253   1e-65
gb|EOY20555.1| Plastid transcriptionally active 2 isoform 1 [The...   253   1e-65

>ref|XP_001753833.1| predicted protein [Physcomitrella patens]
           gi|162694809|gb|EDQ81155.1| predicted protein
           [Physcomitrella patens]
          Length = 779

 Score =  262 bits (669), Expect = 4e-68
 Identities = 122/172 (70%), Positives = 145/172 (84%), Gaps = 6/172 (3%)
 Frame = +3

Query: 3   RQQWCKPNENIYTLIIGVLGREGLLDKCSEIFEEMPSYGVHWTVFTFTALINAYGRNGQY 182
           R QWCKPNE++YT++IG++GREG+LDK SE+FE+MP   V W V++FTALINAYGRNGQ+
Sbjct: 66  RHQWCKPNEHVYTIMIGIMGREGMLDKASELFEDMPLNDVEWNVYSFTALINAYGRNGQH 125

Query: 183 ETSLHLLARMKREGIAPALVTYNTVITACVRGGLDWEGLLGLFAQMRHDGIQPDIITYNT 362
           E SLHLLARMKRE + P L+TYNTVI AC +GGL+WEGLLGLFAQMRH+GIQPDIITYNT
Sbjct: 126 EASLHLLARMKREKVTPNLITYNTVINACAKGGLEWEGLLGLFAQMRHEGIQPDIITYNT 185

Query: 363 LLSACSSRGLLNEAEMVFRTMNEAGIVPNKATYTLLVDTF------KNIGEL 500
           LLSACSSRGL+ EA MVFRTMNEAG+VP+  TY  LVD +      + +GEL
Sbjct: 186 LLSACSSRGLVEEAGMVFRTMNEAGVVPDSITYNALVDIYGQADRHEGVGEL 237



 Score = 91.7 bits (226), Expect = 9e-17
 Identities = 50/160 (31%), Positives = 81/160 (50%)
 Frame = +3

Query: 3   RQQWCKPNENIYTLIIGVLGREGLLDKCSEIFEEMPSYGVHWTVFTFTALINAYGRNGQY 182
           R +  +P+   Y  ++      GL+++   +F  M   GV     T+ AL++ YG+  ++
Sbjct: 172 RHEGIQPDIITYNTLLSACSSRGLVEEAGMVFRTMNEAGVVPDSITYNALVDIYGQADRH 231

Query: 183 ETSLHLLARMKREGIAPALVTYNTVITACVRGGLDWEGLLGLFAQMRHDGIQPDIITYNT 362
           E    LL  M++ G AP +V YN +I A  R G  +     +F QM+  G  PD++T++T
Sbjct: 232 EGVGELLREMEQAGNAPDVVAYNILIEAYGRAG-KYRAAAKMFKQMQEAGCTPDVVTFST 290

Query: 363 LLSACSSRGLLNEAEMVFRTMNEAGIVPNKATYTLLVDTF 482
           LL A    G  +E  ++F  M E G  P+  TY  L+  F
Sbjct: 291 LLEAYGKHGCYDEVRLLFTDMKERGTEPDVNTYNTLIQVF 330



 Score = 87.0 bits (214), Expect = 2e-15
 Identities = 50/156 (32%), Positives = 80/156 (51%)
 Frame = +3

Query: 21  PNENIYTLIIGVLGREGLLDKCSEIFEEMPSYGVHWTVFTFTALINAYGRNGQYETSLHL 200
           P+   Y ++I   GR G     +++F++M   G    V TF+ L+ AYG++G Y+    L
Sbjct: 248 PDVVAYNILIEAYGRAGKYRAAAKMFKQMQEAGCTPDVVTFSTLLEAYGKHGCYDEVRLL 307

Query: 201 LARMKREGIAPALVTYNTVITACVRGGLDWEGLLGLFAQMRHDGIQPDIITYNTLLSACS 380
              MK  G  P + TYNT+I    +GG   E  + LF  +   G++PD+ TY  LL +C 
Sbjct: 308 FTDMKERGTEPDVNTYNTLIQVFGQGGFFQES-INLFWDLLDGGVEPDMSTYAGLLYSCG 366

Query: 381 SRGLLNEAEMVFRTMNEAGIVPNKATYTLLVDTFKN 488
             GL   A+ + R M ++ + P    +T L+  + N
Sbjct: 367 KGGLHKAAKKIHRHMLQSYVTPTTDGFTGLITAYGN 402



 Score = 78.6 bits (192), Expect = 8e-13
 Identities = 53/159 (33%), Positives = 73/159 (45%)
 Frame = +3

Query: 18  KPNENIYTLIIGVLGREGLLDKCSEIFEEMPSYGVHWTVFTFTALINAYGRNGQYETSLH 197
           +P+ + Y  ++   G+ GL     +I   M    V  T   FT LI AYG    Y  + +
Sbjct: 352 EPDMSTYAGLLYSCGKGGLHKAAKKIHRHMLQSYVTPTTDGFTGLITAYGNAALYSEATY 411

Query: 198 LLARMKREGIAPALVTYNTVITACVRGGLDWEGLLGLFAQMRHDGIQPDIITYNTLLSAC 377
               MK  G  P L TYN +I A   GGL  E     +  M  +GI  D+ TYN+L+ A 
Sbjct: 412 AFNSMKESGCKPDLETYNALIGAHAGGGLYCEA-GSAYLTMIDEGISADVSTYNSLIEAF 470

Query: 378 SSRGLLNEAEMVFRTMNEAGIVPNKATYTLLVDTFKNIG 494
              GL ++A    R M EA   PN+ TY  L+  +   G
Sbjct: 471 GRGGLFDDAIEFSRDMEEARCSPNRHTYEALMGVYCTAG 509



 Score = 63.2 bits (152), Expect = 4e-08
 Identities = 44/156 (28%), Positives = 71/156 (45%)
 Frame = +3

Query: 6   QQWCKPNENIYTLIIGVLGREGLLDKCSEIFEEMPSYGVHWTVFTFTALINAYGRNGQYE 185
           Q +  P  + +T +I   G   L  + +  F  M   G    + T+ ALI A+   G Y 
Sbjct: 383 QSYVTPTTDGFTGLITAYGNAALYSEATYAFNSMKESGCKPDLETYNALIGAHAGGGLYC 442

Query: 186 TSLHLLARMKREGIAPALVTYNTVITACVRGGLDWEGLLGLFAQMRHDGIQPDIITYNTL 365
            +      M  EGI+  + TYN++I A  RGGL ++  +     M      P+  TY  L
Sbjct: 443 EAGSAYLTMIDEGISADVSTYNSLIEAFGRGGL-FDDAIEFSRDMEEARCSPNRHTYEAL 501

Query: 366 LSACSSRGLLNEAEMVFRTMNEAGIVPNKATYTLLV 473
           +    + GL +EA+  F  +   G +P+  +Y LL+
Sbjct: 502 MGVYCTAGLFDEAKAQFLDLQVGGELPSVDSYCLLL 537



 Score = 59.3 bits (142), Expect = 5e-07
 Identities = 37/143 (25%), Positives = 64/143 (44%)
 Frame = +3

Query: 3   RQQWCKPNENIYTLIIGVLGREGLLDKCSEIFEEMPSYGVHWTVFTFTALINAYGRNGQY 182
           ++  CKP+   Y  +IG     GL  +    +  M   G+   V T+ +LI A+GR G +
Sbjct: 417 KESGCKPDLETYNALIGAHAGGGLYCEAGSAYLTMIDEGISADVSTYNSLIEAFGRGGLF 476

Query: 183 ETSLHLLARMKREGIAPALVTYNTVITACVRGGLDWEGLLGLFAQMRHDGIQPDIITYNT 362
           + ++     M+    +P   TY  ++      GL ++     F  ++  G  P + +Y  
Sbjct: 477 DDAIEFSRDMEEARCSPNRHTYEALMGVYCTAGL-FDEAKAQFLDLQVGGELPSVDSYCL 535

Query: 363 LLSACSSRGLLNEAEMVFRTMNE 431
           LLS C+ R   ++A  V   M E
Sbjct: 536 LLSVCARRNRWDDASKVLEEMLE 558


>ref|XP_002964905.1| hypothetical protein SELMODRAFT_167316 [Selaginella moellendorffii]
           gi|300167138|gb|EFJ33743.1| hypothetical protein
           SELMODRAFT_167316 [Selaginella moellendorffii]
          Length = 773

 Score =  260 bits (664), Expect = 2e-67
 Identities = 120/169 (71%), Positives = 142/169 (84%)
 Frame = +3

Query: 3   RQQWCKPNENIYTLIIGVLGREGLLDKCSEIFEEMPSYGVHWTVFTFTALINAYGRNGQY 182
           RQQWCKP E+IYT++IG++GREGLL+KCSEIFE+MP   V W V+ FTALINAYGRNGQY
Sbjct: 74  RQQWCKPTEHIYTIMIGIMGREGLLEKCSEIFEDMPENDVKWNVYAFTALINAYGRNGQY 133

Query: 183 ETSLHLLARMKREGIAPALVTYNTVITACVRGGLDWEGLLGLFAQMRHDGIQPDIITYNT 362
           E SLHLLARMK+E + P L+TYNTV+ AC +GGLDWEGLL LFAQMRH+GIQPD+ITYNT
Sbjct: 134 EASLHLLARMKKEQVEPNLITYNTVLNACSKGGLDWEGLLNLFAQMRHEGIQPDLITYNT 193

Query: 363 LLSACSSRGLLNEAEMVFRTMNEAGIVPNKATYTLLVDTFKNIGELEMV 509
           LLSACSSRGL+ +A MVF+TMNE+G+V +  TY  LVDTF    +L  V
Sbjct: 194 LLSACSSRGLVEQAAMVFKTMNESGVVADAVTYKSLVDTFAGSNQLGRV 242



 Score = 81.3 bits (199), Expect = 1e-13
 Identities = 45/160 (28%), Positives = 77/160 (48%)
 Frame = +3

Query: 3   RQQWCKPNENIYTLIIGVLGREGLLDKCSEIFEEMPSYGVHWTVFTFTALINAYGRNGQY 182
           R +  +P+   Y  ++      GL+++ + +F+ M   GV     T+ +L++ +  + Q 
Sbjct: 180 RHEGIQPDLITYNTLLSACSSRGLVEQAAMVFKTMNESGVVADAVTYKSLVDTFAGSNQL 239

Query: 183 ETSLHLLARMKREGIAPALVTYNTVITACVRGGLDWEGLLGLFAQMRHDGIQPDIITYNT 362
                LL  M+ EG  P +  YN++I A    G +  G  G+F QM+  G  PD+ TY+T
Sbjct: 240 GRVEELLREMEDEGNPPDIAGYNSLIEAYADAG-NVHGAAGVFKQMQRGGCAPDVETYST 298

Query: 363 LLSACSSRGLLNEAEMVFRTMNEAGIVPNKATYTLLVDTF 482
           LL    ++G   +   +F  M +    P  ATY  L+  F
Sbjct: 299 LLRIYGNQGCFEQVRSLFSDMKDLSTPPTVATYNSLIQVF 338



 Score = 74.7 bits (182), Expect = 1e-11
 Identities = 44/194 (22%), Positives = 82/194 (42%), Gaps = 34/194 (17%)
 Frame = +3

Query: 15  CKPNENIYTLIIGVLGREGLLDKCSEIFEEMPSYGVHWTVFTFTALINAYGRNGQYETSL 194
           C P+   Y+ ++ + G +G  ++   +F +M       TV T+ +LI  +G  G ++ S+
Sbjct: 289 CAPDVETYSTLLRIYGNQGCFEQVRSLFSDMKDLSTPPTVATYNSLIQVFGEGGYFQESI 348

Query: 195 HLLARMKREGIAPALVTYNTVITACVRGGLDWE---------------------GLLGLF 311
           +L   M   G+ P   TY+ +++ C RGGL  E                     GL+  +
Sbjct: 349 NLFHDMVDSGVKPDDATYSALLSVCGRGGLTREAAKIHQHMLTNESTPSLEASAGLISSY 408

Query: 312 AQM-------------RHDGIQPDIITYNTLLSACSSRGLLNEAEMVFRTMNEAGIVPNK 452
            +M             R  G+ P +  Y+ L+   +  GL  EA      MN+AG     
Sbjct: 409 GKMAMYKDALVSYYRIREAGLDPQVSAYDALIQGYAKGGLYVEAGSTLYAMNKAGFQAPV 468

Query: 453 ATYTLLVDTFKNIG 494
           ++   +++ +  +G
Sbjct: 469 SSVNSVMEAYSKVG 482



 Score = 67.0 bits (162), Expect = 2e-09
 Identities = 41/130 (31%), Positives = 61/130 (46%)
 Frame = +3

Query: 36  YTLIIGVLGREGLLDKCSEIFEEMPSYGVHWTVFTFTALINAYGRNGQYETSLHLLARMK 215
           Y  +I      G +   + +F++M   G    V T++ L+  YG  G +E    L + MK
Sbjct: 261 YNSLIEAYADAGNVHGAAGVFKQMQRGGCAPDVETYSTLLRIYGNQGCFEQVRSLFSDMK 320

Query: 216 REGIAPALVTYNTVITACVRGGLDWEGLLGLFAQMRHDGIQPDIITYNTLLSACSSRGLL 395
                P + TYN++I     GG   E  + LF  M   G++PD  TY+ LLS C   GL 
Sbjct: 321 DLSTPPTVATYNSLIQVFGEGGYFQES-INLFHDMVDSGVKPDDATYSALLSVCGRGGLT 379

Query: 396 NEAEMVFRTM 425
            EA  + + M
Sbjct: 380 REAAKIHQHM 389


>ref|XP_002986487.1| hypothetical protein SELMODRAFT_182414 [Selaginella moellendorffii]
           gi|300145670|gb|EFJ12344.1| hypothetical protein
           SELMODRAFT_182414 [Selaginella moellendorffii]
          Length = 773

 Score =  260 bits (664), Expect = 2e-67
 Identities = 120/169 (71%), Positives = 142/169 (84%)
 Frame = +3

Query: 3   RQQWCKPNENIYTLIIGVLGREGLLDKCSEIFEEMPSYGVHWTVFTFTALINAYGRNGQY 182
           RQQWCKP E+IYT++IG++GREGLL+KCSEIFE+MP   V W V+ FTALINAYGRNGQY
Sbjct: 74  RQQWCKPTEHIYTIMIGIMGREGLLEKCSEIFEDMPENDVKWNVYAFTALINAYGRNGQY 133

Query: 183 ETSLHLLARMKREGIAPALVTYNTVITACVRGGLDWEGLLGLFAQMRHDGIQPDIITYNT 362
           E SLHLLARMK+E + P L+TYNTV+ AC +GGLDWEGLL LFAQMRH+GIQPD+ITYNT
Sbjct: 134 EASLHLLARMKKERVEPNLITYNTVLNACSKGGLDWEGLLNLFAQMRHEGIQPDLITYNT 193

Query: 363 LLSACSSRGLLNEAEMVFRTMNEAGIVPNKATYTLLVDTFKNIGELEMV 509
           LLSACSSRGL+ +A MVF+TMNE+G+V +  TY  LVDTF    +L  V
Sbjct: 194 LLSACSSRGLVEQAAMVFKTMNESGVVADAVTYKSLVDTFAGSNQLGRV 242



 Score = 83.2 bits (204), Expect = 3e-14
 Identities = 46/160 (28%), Positives = 78/160 (48%)
 Frame = +3

Query: 3   RQQWCKPNENIYTLIIGVLGREGLLDKCSEIFEEMPSYGVHWTVFTFTALINAYGRNGQY 182
           R +  +P+   Y  ++      GL+++ + +F+ M   GV     T+ +L++ +  + Q 
Sbjct: 180 RHEGIQPDLITYNTLLSACSSRGLVEQAAMVFKTMNESGVVADAVTYKSLVDTFAGSNQL 239

Query: 183 ETSLHLLARMKREGIAPALVTYNTVITACVRGGLDWEGLLGLFAQMRHDGIQPDIITYNT 362
                LL  M+ EG +P +  YN++I A    G +  G  G+F QM+  G  PD+ TY+T
Sbjct: 240 GRVEELLREMEDEGNSPDIAGYNSLIEAYADAG-NVHGAAGVFKQMQRGGCAPDVETYST 298

Query: 363 LLSACSSRGLLNEAEMVFRTMNEAGIVPNKATYTLLVDTF 482
           LL    ++G   +   +F  M E    P  ATY  L+  F
Sbjct: 299 LLRIYGNQGCFEQVRSLFSDMKELSTPPTVATYNSLIQVF 338



 Score = 74.7 bits (182), Expect = 1e-11
 Identities = 44/194 (22%), Positives = 82/194 (42%), Gaps = 34/194 (17%)
 Frame = +3

Query: 15  CKPNENIYTLIIGVLGREGLLDKCSEIFEEMPSYGVHWTVFTFTALINAYGRNGQYETSL 194
           C P+   Y+ ++ + G +G  ++   +F +M       TV T+ +LI  +G  G ++ S+
Sbjct: 289 CAPDVETYSTLLRIYGNQGCFEQVRSLFSDMKELSTPPTVATYNSLIQVFGEGGYFQESI 348

Query: 195 HLLARMKREGIAPALVTYNTVITACVRGGLDWE---------------------GLLGLF 311
           +L   M   G+ P   TY+ +++ C RGGL  E                     GL+  +
Sbjct: 349 NLFHDMVDSGVKPDDATYSALLSVCGRGGLTREAAKIHQHMLTNESTPSLEASAGLISSY 408

Query: 312 AQM-------------RHDGIQPDIITYNTLLSACSSRGLLNEAEMVFRTMNEAGIVPNK 452
            +M             R  G+ P +  Y+ L+   +  GL  EA      MN+AG     
Sbjct: 409 GKMAMYKDALVSYYRIREAGLDPQVSAYDALIQGYAKGGLYVEAGSTLYAMNKAGFQAPV 468

Query: 453 ATYTLLVDTFKNIG 494
           ++   +++ +  +G
Sbjct: 469 SSVNSVMEAYSKVG 482



 Score = 67.8 bits (164), Expect = 1e-09
 Identities = 41/130 (31%), Positives = 61/130 (46%)
 Frame = +3

Query: 36  YTLIIGVLGREGLLDKCSEIFEEMPSYGVHWTVFTFTALINAYGRNGQYETSLHLLARMK 215
           Y  +I      G +   + +F++M   G    V T++ L+  YG  G +E    L + MK
Sbjct: 261 YNSLIEAYADAGNVHGAAGVFKQMQRGGCAPDVETYSTLLRIYGNQGCFEQVRSLFSDMK 320

Query: 216 REGIAPALVTYNTVITACVRGGLDWEGLLGLFAQMRHDGIQPDIITYNTLLSACSSRGLL 395
                P + TYN++I     GG   E  + LF  M   G++PD  TY+ LLS C   GL 
Sbjct: 321 ELSTPPTVATYNSLIQVFGEGGYFQES-INLFHDMVDSGVKPDDATYSALLSVCGRGGLT 379

Query: 396 NEAEMVFRTM 425
            EA  + + M
Sbjct: 380 REAAKIHQHM 389


>gb|EXB29767.1| hypothetical protein L484_008930 [Morus notabilis]
          Length = 905

 Score =  258 bits (658), Expect = 7e-67
 Identities = 121/169 (71%), Positives = 148/169 (87%)
 Frame = +3

Query: 3   RQQWCKPNENIYTLIIGVLGREGLLDKCSEIFEEMPSYGVHWTVFTFTALINAYGRNGQY 182
           RQ WCKPNE+IYT++I +LGREGLLDK +EIF+EMPS GV  +VF++TALINAYGRNGQY
Sbjct: 150 RQIWCKPNEHIYTIMISLLGREGLLDKSAEIFDEMPSQGVVRSVFSYTALINAYGRNGQY 209

Query: 183 ETSLHLLARMKREGIAPALVTYNTVITACVRGGLDWEGLLGLFAQMRHDGIQPDIITYNT 362
           ETSL LL RMK++ ++P ++TYNTVI AC RGGLDWEGLLGLFA+MRH+GIQPD++TYNT
Sbjct: 210 ETSLQLLDRMKKDKVSPNILTYNTVINACARGGLDWEGLLGLFAEMRHEGIQPDLVTYNT 269

Query: 363 LLSACSSRGLLNEAEMVFRTMNEAGIVPNKATYTLLVDTFKNIGELEMV 509
           LL AC++RGL +EAEMVFRTMNE GIVP+  TY+ LV+TF  +G+LE V
Sbjct: 270 LLGACANRGLGDEAEMVFRTMNEGGIVPDITTYSCLVETFGKLGKLEKV 318



 Score = 89.7 bits (221), Expect = 4e-16
 Identities = 49/160 (30%), Positives = 75/160 (46%)
 Frame = +3

Query: 15  CKPNENIYTLIIGVLGREGLLDKCSEIFEEMPSYGVHWTVFTFTALINAYGRNGQYETSL 194
           C PN N Y++++ + G++G  +   E+F EM          T+  LI  +G  G ++  +
Sbjct: 365 CLPNANTYSILLNLYGKQGRYEDVRELFLEMKVSNTEPDAATYNILIQVFGEGGYFKEVV 424

Query: 195 HLLARMKREGIAPALVTYNTVITACVRGGLDWEGLLGLFAQMRHDGIQPDIITYNTLLSA 374
            L   M  E + P + TY  +I AC +GGL  +  + +   M   GI P    Y  ++ A
Sbjct: 425 TLFHDMVEENVEPNMETYEGLIIACGKGGLHGDAKI-ILNHMNEKGIVPSSKVYTGVIEA 483

Query: 375 CSSRGLLNEAEMVFRTMNEAGIVPNKATYTLLVDTFKNIG 494
                L  EA + F TMNE G  P+  TY  L+  F   G
Sbjct: 484 YGQAALYEEALVAFNTMNEVGSRPSVETYNSLIHAFSRGG 523



 Score = 87.8 bits (216), Expect = 1e-15
 Identities = 45/154 (29%), Positives = 79/154 (51%)
 Frame = +3

Query: 21  PNENIYTLIIGVLGREGLLDKCSEIFEEMPSYGVHWTVFTFTALINAYGRNGQYETSLHL 200
           P+   Y +++      G + +   +F +M + G      T++ L+N YG+ G+YE    L
Sbjct: 332 PDITSYNVLLEAYAESGSISEAVGVFRQMQTAGCLPNANTYSILLNLYGKQGRYEDVREL 391

Query: 201 LARMKREGIAPALVTYNTVITACVRGGLDWEGLLGLFAQMRHDGIQPDIITYNTLLSACS 380
              MK     P   TYN +I     GG  ++ ++ LF  M  + ++P++ TY  L+ AC 
Sbjct: 392 FLEMKVSNTEPDAATYNILIQVFGEGGY-FKEVVTLFHDMVEENVEPNMETYEGLIIACG 450

Query: 381 SRGLLNEAEMVFRTMNEAGIVPNKATYTLLVDTF 482
             GL  +A+++   MNE GIVP+   YT +++ +
Sbjct: 451 KGGLHGDAKIILNHMNEKGIVPSSKVYTGVIEAY 484



 Score = 70.1 bits (170), Expect = 3e-10
 Identities = 43/161 (26%), Positives = 78/161 (48%)
 Frame = +3

Query: 21  PNENIYTLIIGVLGREGLLDKCSEIFEEMPSYGVHWTVFTFTALINAYGRNGQYETSLHL 200
           P+  +YT +I   G+  L ++    F  M   G   +V T+ +LI+A+ R G Y+ +  +
Sbjct: 472 PSSKVYTGVIEAYGQAALYEEALVAFNTMNEVGSRPSVETYNSLIHAFSRGGLYKEAEAI 531

Query: 201 LARMKREGIAPALVTYNTVITACVRGGLDWEGLLGLFAQMRHDGIQPDIITYNTLLSACS 380
           L RM    +A  +  +N++I A  +GG   E  +  + +M      PD  T   LLS   
Sbjct: 532 LQRMGNSAVARNVDLFNSLIEAFRQGG-QIEEAVKAYIEMGKSRCDPDERTLEALLSVYC 590

Query: 381 SRGLLNEAEMVFRTMNEAGIVPNKATYTLLVDTFKNIGELE 503
             GL++E E  F+ +  +GI+P+   Y  ++  +     ++
Sbjct: 591 FAGLVDECEEHFKEIKASGILPSVMCYCTMLAVYARCDRID 631



 Score = 63.5 bits (153), Expect = 3e-08
 Identities = 41/155 (26%), Positives = 73/155 (47%)
 Frame = +3

Query: 18  KPNENIYTLIIGVLGREGLLDKCSEIFEEMPSYGVHWTVFTFTALINAYGRNGQYETSLH 197
           +PN   Y  +I   G+ GL      I   M   G+  +   +T +I AYG+   YE +L 
Sbjct: 436 EPNMETYEGLIIACGKGGLHGDAKIILNHMNEKGIVPSSKVYTGVIEAYGQAALYEEALV 495

Query: 198 LLARMKREGIAPALVTYNTVITACVRGGLDWEGLLGLFAQMRHDGIQPDIITYNTLLSAC 377
               M   G  P++ TYN++I A  RGGL ++    +  +M +  +  ++  +N+L+ A 
Sbjct: 496 AFNTMNEVGSRPSVETYNSLIHAFSRGGL-YKEAEAILQRMGNSAVARNVDLFNSLIEAF 554

Query: 378 SSRGLLNEAEMVFRTMNEAGIVPNKATYTLLVDTF 482
              G + EA   +  M ++   P++ T   L+  +
Sbjct: 555 RQGGQIEEAVKAYIEMGKSRCDPDERTLEALLSVY 589


>ref|NP_177623.1| plastid transcriptionally active 2 [Arabidopsis thaliana]
           gi|75194055|sp|Q9S7Q2.1|PP124_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At1g74850, chloroplastic; AltName: Full=Protein PLASTID
           TRANSCRIPTIONALLY ACTIVE 2; Flags: Precursor
           gi|5882738|gb|AAD55291.1|AC008263_22 Contains 3 PF|01535
           DUF17 domains [Arabidopsis thaliana]
           gi|12323908|gb|AAG51934.1|AC013258_28 hypothetical
           protein; 81052-84129 [Arabidopsis thaliana]
           gi|332197518|gb|AEE35639.1| plastid transcriptionally
           active 2 [Arabidopsis thaliana]
          Length = 862

 Score =  257 bits (657), Expect = 1e-66
 Identities = 122/169 (72%), Positives = 146/169 (86%)
 Frame = +3

Query: 3   RQQWCKPNENIYTLIIGVLGREGLLDKCSEIFEEMPSYGVHWTVFTFTALINAYGRNGQY 182
           RQ WCKPNE+IYT++I +LGREGLLDKC E+F+EMPS GV  +VF++TALINAYGRNG+Y
Sbjct: 133 RQIWCKPNEHIYTIMISLLGREGLLDKCLEVFDEMPSQGVSRSVFSYTALINAYGRNGRY 192

Query: 183 ETSLHLLARMKREGIAPALVTYNTVITACVRGGLDWEGLLGLFAQMRHDGIQPDIITYNT 362
           ETSL LL RMK E I+P+++TYNTVI AC RGGLDWEGLLGLFA+MRH+GIQPDI+TYNT
Sbjct: 193 ETSLELLDRMKNEKISPSILTYNTVINACARGGLDWEGLLGLFAEMRHEGIQPDIVTYNT 252

Query: 363 LLSACSSRGLLNEAEMVFRTMNEAGIVPNKATYTLLVDTFKNIGELEMV 509
           LLSAC+ RGL +EAEMVFRTMN+ GIVP+  TY+ LV+TF  +  LE V
Sbjct: 253 LLSACAIRGLGDEAEMVFRTMNDGGIVPDLTTYSHLVETFGKLRRLEKV 301



 Score = 82.4 bits (202), Expect = 6e-14
 Identities = 49/160 (30%), Positives = 75/160 (46%)
 Frame = +3

Query: 15  CKPNENIYTLIIGVLGREGLLDKCSEIFEEMPSYGVHWTVFTFTALINAYGRNGQYETSL 194
           C PN N Y++++ + G+ G  D   ++F EM S        T+  LI  +G  G ++  +
Sbjct: 348 CTPNANTYSVLLNLFGQSGRYDDVRQLFLEMKSSNTDPDAATYNILIEVFGEGGYFKEVV 407

Query: 195 HLLARMKREGIAPALVTYNTVITACVRGGLDWEGLLGLFAQMRHDGIQPDIITYNTLLSA 374
            L   M  E I P + TY  +I AC +GGL  E    +   M  + I P    Y  ++ A
Sbjct: 408 TLFHDMVEENIEPDMETYEGIIFACGKGGLH-EDARKILQYMTANDIVPSSKAYTGVIEA 466

Query: 375 CSSRGLLNEAEMVFRTMNEAGIVPNKATYTLLVDTFKNIG 494
                L  EA + F TM+E G  P+  T+  L+ +F   G
Sbjct: 467 FGQAALYEEALVAFNTMHEVGSNPSIETFHSLLYSFARGG 506



 Score = 81.3 bits (199), Expect = 1e-13
 Identities = 42/154 (27%), Positives = 77/154 (50%)
 Frame = +3

Query: 21  PNENIYTLIIGVLGREGLLDKCSEIFEEMPSYGVHWTVFTFTALINAYGRNGQYETSLHL 200
           P+   Y +++    + G + +   +F +M + G      T++ L+N +G++G+Y+    L
Sbjct: 315 PDITSYNVLLEAYAKSGSIKEAMGVFHQMQAAGCTPNANTYSVLLNLFGQSGRYDDVRQL 374

Query: 201 LARMKREGIAPALVTYNTVITACVRGGLDWEGLLGLFAQMRHDGIQPDIITYNTLLSACS 380
              MK     P   TYN +I     GG  ++ ++ LF  M  + I+PD+ TY  ++ AC 
Sbjct: 375 FLEMKSSNTDPDAATYNILIEVFGEGGY-FKEVVTLFHDMVEENIEPDMETYEGIIFACG 433

Query: 381 SRGLLNEAEMVFRTMNEAGIVPNKATYTLLVDTF 482
             GL  +A  + + M    IVP+   YT +++ F
Sbjct: 434 KGGLHEDARKILQYMTANDIVPSSKAYTGVIEAF 467



 Score = 60.1 bits (144), Expect = 3e-07
 Identities = 40/154 (25%), Positives = 71/154 (46%)
 Frame = +3

Query: 21  PNENIYTLIIGVLGREGLLDKCSEIFEEMPSYGVHWTVFTFTALINAYGRNGQYETSLHL 200
           P+   YT +I   G+  L ++    F  M   G + ++ TF +L+ ++ R G  + S  +
Sbjct: 455 PSSKAYTGVIEAFGQAALYEEALVAFNTMHEVGSNPSIETFHSLLYSFARGGLVKESEAI 514

Query: 201 LARMKREGIAPALVTYNTVITACVRGGLDWEGLLGLFAQMRHDGIQPDIITYNTLLSACS 380
           L+R+   GI     T+N  I A  +GG  +E  +  +  M      PD  T   +LS  S
Sbjct: 515 LSRLVDSGIPRNRDTFNAQIEAYKQGG-KFEEAVKTYVDMEKSRCDPDERTLEAVLSVYS 573

Query: 381 SRGLLNEAEMVFRTMNEAGIVPNKATYTLLVDTF 482
              L++E    F  M  + I+P+   Y +++  +
Sbjct: 574 FARLVDECREQFEEMKASDILPSIMCYCMMLAVY 607


>ref|XP_006476695.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74850,
           chloroplastic-like [Citrus sinensis]
          Length = 871

 Score =  257 bits (656), Expect = 1e-66
 Identities = 123/169 (72%), Positives = 146/169 (86%)
 Frame = +3

Query: 3   RQQWCKPNENIYTLIIGVLGREGLLDKCSEIFEEMPSYGVHWTVFTFTALINAYGRNGQY 182
           RQ WCKP+E IYT++I +LGRE LLDK SE+FEEMPS GV  +VF++TALINAYGR+GQY
Sbjct: 139 RQIWCKPSEQIYTIMISLLGRENLLDKASEVFEEMPSQGVPRSVFSYTALINAYGRHGQY 198

Query: 183 ETSLHLLARMKREGIAPALVTYNTVITACVRGGLDWEGLLGLFAQMRHDGIQPDIITYNT 362
           ETSL LL RMKRE IAP ++TYNTVI ACVRGGLDWE LLGLFA+MRH+GIQPDI+TYNT
Sbjct: 199 ETSLELLDRMKREKIAPNILTYNTVINACVRGGLDWEDLLGLFAEMRHEGIQPDIVTYNT 258

Query: 363 LLSACSSRGLLNEAEMVFRTMNEAGIVPNKATYTLLVDTFKNIGELEMV 509
           LLSAC SRGL +EAEMVFRTMNE G++P+  T++ LV+TF  +G+LE V
Sbjct: 259 LLSACGSRGLGDEAEMVFRTMNEGGVLPDLTTFSYLVETFGKLGKLEKV 307



 Score = 87.8 bits (216), Expect = 1e-15
 Identities = 44/154 (28%), Positives = 79/154 (51%)
 Frame = +3

Query: 21  PNENIYTLIIGVLGREGLLDKCSEIFEEMPSYGVHWTVFTFTALINAYGRNGQYETSLHL 200
           P+   Y +++    + G + +  ++F +M + G      T++ L+N YGRNG+Y+    L
Sbjct: 321 PDVTCYNVLLEAHAKMGSIKEAMDVFRQMQAAGSVANATTYSILLNLYGRNGRYDDVREL 380

Query: 201 LARMKREGIAPALVTYNTVITACVRGGLDWEGLLGLFAQMRHDGIQPDIITYNTLLSACS 380
              MK     P   TYN +I     GG  ++ ++ LF  M  + ++P++ TY  L+ AC 
Sbjct: 381 FLEMKASNTEPNAATYNILIQVFGEGGY-FKEVVTLFHDMVEENVEPNMETYEGLIFACG 439

Query: 381 SRGLLNEAEMVFRTMNEAGIVPNKATYTLLVDTF 482
             GL  + + +   MNE G VP+   YT +++ +
Sbjct: 440 KGGLHEDVKKILLYMNERGTVPSSKAYTGVIEAY 473



 Score = 80.1 bits (196), Expect = 3e-13
 Identities = 48/157 (30%), Positives = 70/157 (44%)
 Frame = +3

Query: 24  NENIYTLIIGVLGREGLLDKCSEIFEEMPSYGVHWTVFTFTALINAYGRNGQYETSLHLL 203
           N   Y++++ + GR G  D   E+F EM +        T+  LI  +G  G ++  + L 
Sbjct: 357 NATTYSILLNLYGRNGRYDDVRELFLEMKASNTEPNAATYNILIQVFGEGGYFKEVVTLF 416

Query: 204 ARMKREGIAPALVTYNTVITACVRGGLDWEGLLGLFAQMRHDGIQPDIITYNTLLSACSS 383
             M  E + P + TY  +I AC +GGL  E +  +   M   G  P    Y  ++ A   
Sbjct: 417 HDMVEENVEPNMETYEGLIFACGKGGLH-EDVKKILLYMNERGTVPSSKAYTGVIEAYGL 475

Query: 384 RGLLNEAEMVFRTMNEAGIVPNKATYTLLVDTFKNIG 494
             L  EA + F TMNE    P   TY  L+ TF   G
Sbjct: 476 AALYEEALVAFNTMNEVESKPTIETYNSLLHTFSRGG 512



 Score = 73.6 bits (179), Expect = 3e-11
 Identities = 47/169 (27%), Positives = 78/169 (46%)
 Frame = +3

Query: 3   RQQWCKPNENIYTLIIGVLGREGLLDKCSEIFEEMPSYGVHWTVFTFTALINAYGRNGQY 182
           R +  +P+   Y  ++   G  GL D+   +F  M   GV   + TF+ L+  +G+ G+ 
Sbjct: 245 RHEGIQPDIVTYNTLLSACGSRGLGDEAEMVFRTMNEGGVLPDLTTFSYLVETFGKLGKL 304

Query: 183 ETSLHLLARMKREGIAPALVTYNTVITACVRGGLDWEGLLGLFAQMRHDGIQPDIITYNT 362
           E    LL  M+  G  P +  YN ++ A  + G   E  + +F QM+  G   +  TY+ 
Sbjct: 305 EKVSELLREMESGGNLPDVTCYNVLLEAHAKMGSIKEA-MDVFRQMQAAGSVANATTYSI 363

Query: 363 LLSACSSRGLLNEAEMVFRTMNEAGIVPNKATYTLLVDTFKNIGELEMV 509
           LL+     G  ++   +F  M  +   PN ATY +L+  F   G  + V
Sbjct: 364 LLNLYGRNGRYDDVRELFLEMKASNTEPNAATYNILIQVFGEGGYFKEV 412



 Score = 65.5 bits (158), Expect = 7e-09
 Identities = 40/154 (25%), Positives = 75/154 (48%)
 Frame = +3

Query: 21  PNENIYTLIIGVLGREGLLDKCSEIFEEMPSYGVHWTVFTFTALINAYGRNGQYETSLHL 200
           P+   YT +I   G   L ++    F  M       T+ T+ +L++ + R G Y+    +
Sbjct: 461 PSSKAYTGVIEAYGLAALYEEALVAFNTMNEVESKPTIETYNSLLHTFSRGGLYKECQAI 520

Query: 201 LARMKREGIAPALVTYNTVITACVRGGLDWEGLLGLFAQMRHDGIQPDIITYNTLLSACS 380
           L+RM   G+A    ++N VI A  +GG  +E  +  + +M      P+  T   +LS   
Sbjct: 521 LSRMSESGVARNSDSFNAVIEAFRQGG-RFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 579

Query: 381 SRGLLNEAEMVFRTMNEAGIVPNKATYTLLVDTF 482
             GL++E++  F+ +  +GI+P+   Y +L+  +
Sbjct: 580 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVY 613


>gb|EMJ11568.1| hypothetical protein PRUPE_ppa001337mg [Prunus persica]
          Length = 850

 Score =  256 bits (654), Expect = 2e-66
 Identities = 118/169 (69%), Positives = 147/169 (86%)
 Frame = +3

Query: 3   RQQWCKPNENIYTLIIGVLGREGLLDKCSEIFEEMPSYGVHWTVFTFTALINAYGRNGQY 182
           RQ WCKPNE+IYT++I +LGREGLLDKCSE+F++MPS GV  +VF++TALINAYGRNGQY
Sbjct: 118 RQIWCKPNEHIYTIMISLLGREGLLDKCSEVFDDMPSQGVVRSVFSYTALINAYGRNGQY 177

Query: 183 ETSLHLLARMKREGIAPALVTYNTVITACVRGGLDWEGLLGLFAQMRHDGIQPDIITYNT 362
           ETSL  L RMK++ ++P+++TYNTV+ AC RGGL+WEGLLGLFA+MRH+GIQPD++TYNT
Sbjct: 178 ETSLQFLDRMKKDKVSPSILTYNTVLNACARGGLEWEGLLGLFAEMRHEGIQPDLVTYNT 237

Query: 363 LLSACSSRGLLNEAEMVFRTMNEAGIVPNKATYTLLVDTFKNIGELEMV 509
           LLSAC+ RGL +EAEMVFRTMNE GIVP+  TY  LV+TF  + +LE V
Sbjct: 238 LLSACAGRGLGDEAEMVFRTMNEGGIVPDITTYRYLVETFGKLDKLEKV 286



 Score = 86.7 bits (213), Expect = 3e-15
 Identities = 51/160 (31%), Positives = 73/160 (45%)
 Frame = +3

Query: 15  CKPNENIYTLIIGVLGREGLLDKCSEIFEEMPSYGVHWTVFTFTALINAYGRNGQYETSL 194
           C PN   Y++++ + GR G  D   E+F EM          T+  LI  +G  G ++  +
Sbjct: 333 CMPNAATYSILLNLYGRHGRYDDVRELFLEMKISNTEPDPATYNILIQVFGEGGYFKEVV 392

Query: 195 HLLARMKREGIAPALVTYNTVITACVRGGLDWEGLLGLFAQMRHDGIQPDIITYNTLLSA 374
            L   M  E I P + TY  +I AC +GGL  E    +   M   GI P    Y  ++ A
Sbjct: 393 TLFHDMVEENIEPNMETYEGLIYACGKGGLH-EDAKNILLHMSEKGIVPSSKAYTGVIEA 451

Query: 375 CSSRGLLNEAEMVFRTMNEAGIVPNKATYTLLVDTFKNIG 494
                L +EA + F TMNE G  P+  +Y  L+  F   G
Sbjct: 452 YGQAALYDEALVAFNTMNEVGSKPSVESYNSLIYAFARGG 491



 Score = 83.2 bits (204), Expect = 3e-14
 Identities = 45/154 (29%), Positives = 80/154 (51%)
 Frame = +3

Query: 21  PNENIYTLIIGVLGREGLLDKCSEIFEEMPSYGVHWTVFTFTALINAYGRNGQYETSLHL 200
           P+   Y +++    + G + +   +F +M + G      T++ L+N YGR+G+Y+    L
Sbjct: 300 PDITSYNVLLEAYAQLGSIRESMGVFRQMQAAGCMPNAATYSILLNLYGRHGRYDDVREL 359

Query: 201 LARMKREGIAPALVTYNTVITACVRGGLDWEGLLGLFAQMRHDGIQPDIITYNTLLSACS 380
              MK     P   TYN +I     GG  ++ ++ LF  M  + I+P++ TY  L+ AC 
Sbjct: 360 FLEMKISNTEPDPATYNILIQVFGEGGY-FKEVVTLFHDMVEENIEPNMETYEGLIYACG 418

Query: 381 SRGLLNEAEMVFRTMNEAGIVPNKATYTLLVDTF 482
             GL  +A+ +   M+E GIVP+   YT +++ +
Sbjct: 419 KGGLHEDAKNILLHMSEKGIVPSSKAYTGVIEAY 452



 Score = 66.6 bits (161), Expect = 3e-09
 Identities = 44/154 (28%), Positives = 74/154 (48%)
 Frame = +3

Query: 21  PNENIYTLIIGVLGREGLLDKCSEIFEEMPSYGVHWTVFTFTALINAYGRNGQYETSLHL 200
           P+   YT +I   G+  L D+    F  M   G   +V ++ +LI A+ R G Y  +  +
Sbjct: 440 PSSKAYTGVIEAYGQAALYDEALVAFNTMNEVGSKPSVESYNSLIYAFARGGLYRETEAV 499

Query: 201 LARMKREGIAPALVTYNTVITACVRGGLDWEGLLGLFAQMRHDGIQPDIITYNTLLSACS 380
           L+ M   G A  + T+N +I A  +GG  +E  +  + +M       D  T   +LS   
Sbjct: 500 LSIMGEVGAARNVHTFNGMIEAFRQGG-QFEEAIKAYVEMEKRRCDHDEWTLEAVLSVYC 558

Query: 381 SRGLLNEAEMVFRTMNEAGIVPNKATYTLLVDTF 482
             GL+NE E  F+ M  +GI+P+   Y +++  +
Sbjct: 559 VAGLVNECEEHFQEMKASGILPSVMCYCMMLAVY 592


>ref|XP_002888995.1| hypothetical protein ARALYDRAFT_476621 [Arabidopsis lyrata subsp.
           lyrata] gi|297334836|gb|EFH65254.1| hypothetical protein
           ARALYDRAFT_476621 [Arabidopsis lyrata subsp. lyrata]
          Length = 863

 Score =  256 bits (654), Expect = 2e-66
 Identities = 121/169 (71%), Positives = 146/169 (86%)
 Frame = +3

Query: 3   RQQWCKPNENIYTLIIGVLGREGLLDKCSEIFEEMPSYGVHWTVFTFTALINAYGRNGQY 182
           RQ WCKPNE+IYT++I +LGREGLLDKC E+F+EMPS GV  +VF++TALINAYGRNG+Y
Sbjct: 133 RQIWCKPNEHIYTIMISLLGREGLLDKCLEVFDEMPSQGVSRSVFSYTALINAYGRNGRY 192

Query: 183 ETSLHLLARMKREGIAPALVTYNTVITACVRGGLDWEGLLGLFAQMRHDGIQPDIITYNT 362
           ETSL LL RMK + I+P+++TYNTVI AC RGGLDWEGLLGLFA+MRH+GIQPDI+TYNT
Sbjct: 193 ETSLELLDRMKNDKISPSILTYNTVINACARGGLDWEGLLGLFAEMRHEGIQPDIVTYNT 252

Query: 363 LLSACSSRGLLNEAEMVFRTMNEAGIVPNKATYTLLVDTFKNIGELEMV 509
           LLSAC+ RGL +EAEMVFRTMN+ GIVP+  TY+ LV+TF  +  LE V
Sbjct: 253 LLSACAIRGLGDEAEMVFRTMNDGGIVPDLTTYSHLVETFGKLRRLEKV 301



 Score = 84.0 bits (206), Expect = 2e-14
 Identities = 50/160 (31%), Positives = 75/160 (46%)
 Frame = +3

Query: 15  CKPNENIYTLIIGVLGREGLLDKCSEIFEEMPSYGVHWTVFTFTALINAYGRNGQYETSL 194
           C PN N Y++++ + G+ G  D   ++F EM S        T+  LI  +G  G ++  +
Sbjct: 348 CTPNANTYSVLLNLFGQSGRYDDVRQLFLEMKSSNTDPDAATYNILIEVFGEGGYFKEVV 407

Query: 195 HLLARMKREGIAPALVTYNTVITACVRGGLDWEGLLGLFAQMRHDGIQPDIITYNTLLSA 374
            L   M  E I P + TY  +I AC +GGL  E    +   M  + I P    Y  ++ A
Sbjct: 408 TLFHDMVEENIEPDMETYEGIIFACGKGGLH-EDARKILQYMTANDIVPSSKAYTGVIEA 466

Query: 375 CSSRGLLNEAEMVFRTMNEAGIVPNKATYTLLVDTFKNIG 494
                L  EA + F TM+E G  P+  TY  L+ +F   G
Sbjct: 467 FGQAALYEEALVAFNTMHEVGSNPSIETYHSLLYSFARGG 506



 Score = 81.3 bits (199), Expect = 1e-13
 Identities = 42/154 (27%), Positives = 77/154 (50%)
 Frame = +3

Query: 21  PNENIYTLIIGVLGREGLLDKCSEIFEEMPSYGVHWTVFTFTALINAYGRNGQYETSLHL 200
           P+   Y +++    + G + +   +F +M + G      T++ L+N +G++G+Y+    L
Sbjct: 315 PDITSYNVLLEAYAKSGSIKEAMGVFHQMQAAGCTPNANTYSVLLNLFGQSGRYDDVRQL 374

Query: 201 LARMKREGIAPALVTYNTVITACVRGGLDWEGLLGLFAQMRHDGIQPDIITYNTLLSACS 380
              MK     P   TYN +I     GG  ++ ++ LF  M  + I+PD+ TY  ++ AC 
Sbjct: 375 FLEMKSSNTDPDAATYNILIEVFGEGGY-FKEVVTLFHDMVEENIEPDMETYEGIIFACG 433

Query: 381 SRGLLNEAEMVFRTMNEAGIVPNKATYTLLVDTF 482
             GL  +A  + + M    IVP+   YT +++ F
Sbjct: 434 KGGLHEDARKILQYMTANDIVPSSKAYTGVIEAF 467



 Score = 58.9 bits (141), Expect = 7e-07
 Identities = 39/154 (25%), Positives = 71/154 (46%)
 Frame = +3

Query: 21  PNENIYTLIIGVLGREGLLDKCSEIFEEMPSYGVHWTVFTFTALINAYGRNGQYETSLHL 200
           P+   YT +I   G+  L ++    F  M   G + ++ T+ +L+ ++ R G  + S  +
Sbjct: 455 PSSKAYTGVIEAFGQAALYEEALVAFNTMHEVGSNPSIETYHSLLYSFARGGLVKESEAI 514

Query: 201 LARMKREGIAPALVTYNTVITACVRGGLDWEGLLGLFAQMRHDGIQPDIITYNTLLSACS 380
           L+R+   GI     T+N  I A  +GG  +E  +  +  M      PD  T   +LS  S
Sbjct: 515 LSRLVDSGIPRNRDTFNAQIEAYKQGG-KFEEAVKTYVDMEKSRCDPDERTLEAVLSVYS 573

Query: 381 SRGLLNEAEMVFRTMNEAGIVPNKATYTLLVDTF 482
              L++E    F  M  + I+P+   Y +++  +
Sbjct: 574 FARLVDECREQFEEMKASDILPSIMCYCMMLAVY 607


>ref|XP_002280557.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74850,
           chloroplastic [Vitis vinifera]
          Length = 869

 Score =  256 bits (654), Expect = 2e-66
 Identities = 121/169 (71%), Positives = 147/169 (86%)
 Frame = +3

Query: 3   RQQWCKPNENIYTLIIGVLGREGLLDKCSEIFEEMPSYGVHWTVFTFTALINAYGRNGQY 182
           RQ WCKPNE+IYT++IGVLGREGLL+KC EIF+EMPS+GV  +VF+FTALINAYGRNGQY
Sbjct: 138 RQIWCKPNEHIYTIMIGVLGREGLLEKCQEIFDEMPSHGVAPSVFSFTALINAYGRNGQY 197

Query: 183 ETSLHLLARMKREGIAPALVTYNTVITACVRGGLDWEGLLGLFAQMRHDGIQPDIITYNT 362
           ++SL LL RMK+E ++P+++TYNTVI +C RGGLDWE LLGLFAQMRH+GIQ DI+TYNT
Sbjct: 198 KSSLELLDRMKKERVSPSILTYNTVINSCARGGLDWEELLGLFAQMRHEGIQADIVTYNT 257

Query: 363 LLSACSSRGLLNEAEMVFRTMNEAGIVPNKATYTLLVDTFKNIGELEMV 509
           LLSAC+ RGL +EAEMVFRTMNE GI+P+  TY+ LV+TF  +  LE V
Sbjct: 258 LLSACARRGLGDEAEMVFRTMNEGGILPDITTYSYLVETFGKLNRLEKV 306



 Score = 89.0 bits (219), Expect = 6e-16
 Identities = 50/160 (31%), Positives = 72/160 (45%)
 Frame = +3

Query: 15  CKPNENIYTLIIGVLGREGLLDKCSEIFEEMPSYGVHWTVFTFTALINAYGRNGQYETSL 194
           C PN   Y++++ + GR G  D   ++F EM          T+  LIN +G  G ++  +
Sbjct: 353 CVPNAATYSILLNLYGRHGRYDDVRDLFLEMKVSNTEPNAATYNILINVFGEGGYFKEVV 412

Query: 195 HLLARMKREGIAPALVTYNTVITACVRGGLDWEGLLGLFAQMRHDGIQPDIITYNTLLSA 374
            L   M  E + P + TY  +I AC +GGL  E    +   M   G+ P    Y  ++ A
Sbjct: 413 TLFHDMVEENVEPNMETYEGLIFACGKGGLH-EDAKKILLHMNEKGVVPSSKAYTGVIEA 471

Query: 375 CSSRGLLNEAEMVFRTMNEAGIVPNKATYTLLVDTFKNIG 494
                L  EA + F TMNE G  P   TY  L+  F   G
Sbjct: 472 YGQAALYEEALVAFNTMNEVGSKPTVETYNSLIQMFAKGG 511



 Score = 85.9 bits (211), Expect = 5e-15
 Identities = 44/154 (28%), Positives = 79/154 (51%)
 Frame = +3

Query: 21  PNENIYTLIIGVLGREGLLDKCSEIFEEMPSYGVHWTVFTFTALINAYGRNGQYETSLHL 200
           P+   Y +++    + G + +   +F +M   G      T++ L+N YGR+G+Y+    L
Sbjct: 320 PDITSYNVLLEAHAQSGSIKEAMGVFRQMQGAGCVPNAATYSILLNLYGRHGRYDDVRDL 379

Query: 201 LARMKREGIAPALVTYNTVITACVRGGLDWEGLLGLFAQMRHDGIQPDIITYNTLLSACS 380
              MK     P   TYN +I     GG  ++ ++ LF  M  + ++P++ TY  L+ AC 
Sbjct: 380 FLEMKVSNTEPNAATYNILINVFGEGGY-FKEVVTLFHDMVEENVEPNMETYEGLIFACG 438

Query: 381 SRGLLNEAEMVFRTMNEAGIVPNKATYTLLVDTF 482
             GL  +A+ +   MNE G+VP+   YT +++ +
Sbjct: 439 KGGLHEDAKKILLHMNEKGVVPSSKAYTGVIEAY 472



 Score = 70.1 bits (170), Expect = 3e-10
 Identities = 44/154 (28%), Positives = 74/154 (48%)
 Frame = +3

Query: 21  PNENIYTLIIGVLGREGLLDKCSEIFEEMPSYGVHWTVFTFTALINAYGRNGQYETSLHL 200
           P+   YT +I   G+  L ++    F  M   G   TV T+ +LI  + + G Y+ S  +
Sbjct: 460 PSSKAYTGVIEAYGQAALYEEALVAFNTMNEVGSKPTVETYNSLIQMFAKGGLYKESEAI 519

Query: 201 LARMKREGIAPALVTYNTVITACVRGGLDWEGLLGLFAQMRHDGIQPDIITYNTLLSACS 380
           L +M + G+A    T+N VI A  +GG  +E  +  + +M      PD  T   +LS   
Sbjct: 520 LLKMGQSGVARNRDTFNGVIEAFRQGG-QFEEAIKAYVEMEKARCDPDEQTLEAVLSVYC 578

Query: 381 SRGLLNEAEMVFRTMNEAGIVPNKATYTLLVDTF 482
             GL+ E+E  F  +   GI+P+   Y +++  +
Sbjct: 579 FAGLVEESEEQFGEIKALGILPSVMCYCMMLAVY 612



 Score = 62.4 bits (150), Expect = 6e-08
 Identities = 43/162 (26%), Positives = 74/162 (45%)
 Frame = +3

Query: 18  KPNENIYTLIIGVLGREGLLDKCSEIFEEMPSYGVHWTVFTFTALINAYGRNGQYETSLH 197
           +PN   Y  +I   G+ GL +   +I   M   GV  +   +T +I AYG+   YE +L 
Sbjct: 424 EPNMETYEGLIFACGKGGLHEDAKKILLHMNEKGVVPSSKAYTGVIEAYGQAALYEEALV 483

Query: 198 LLARMKREGIAPALVTYNTVITACVRGGLDWEGLLGLFAQMRHDGIQPDIITYNTLLSAC 377
               M   G  P + TYN++I    +GGL ++    +  +M   G+  +  T+N ++ A 
Sbjct: 484 AFNTMNEVGSKPTVETYNSLIQMFAKGGL-YKESEAILLKMGQSGVARNRDTFNGVIEAF 542

Query: 378 SSRGLLNEAEMVFRTMNEAGIVPNKATYTLLVDTFKNIGELE 503
              G   EA   +  M +A   P++ T   ++  +   G +E
Sbjct: 543 RQGGQFEEAIKAYVEMEKARCDPDEQTLEAVLSVYCFAGLVE 584


>ref|XP_002322139.2| hypothetical protein POPTR_0015s08030g [Populus trichocarpa]
           gi|550322283|gb|EEF06266.2| hypothetical protein
           POPTR_0015s08030g [Populus trichocarpa]
          Length = 866

 Score =  256 bits (653), Expect = 3e-66
 Identities = 118/169 (69%), Positives = 147/169 (86%)
 Frame = +3

Query: 3   RQQWCKPNENIYTLIIGVLGREGLLDKCSEIFEEMPSYGVHWTVFTFTALINAYGRNGQY 182
           RQ WCKPNE+IYT++I +LGREGLL+KCS+IFEEM ++GV  +VF++TALIN+YGRNG+Y
Sbjct: 135 RQIWCKPNEHIYTIMISLLGREGLLEKCSDIFEEMGAHGVSRSVFSYTALINSYGRNGKY 194

Query: 183 ETSLHLLARMKREGIAPALVTYNTVITACVRGGLDWEGLLGLFAQMRHDGIQPDIITYNT 362
           E SL LL RMK+E ++P+++TYNTVI +C RGGLDWEGLLGLFA+MRH+GIQPDI+TYNT
Sbjct: 195 EVSLELLERMKKERVSPSILTYNTVINSCARGGLDWEGLLGLFAEMRHEGIQPDIVTYNT 254

Query: 363 LLSACSSRGLLNEAEMVFRTMNEAGIVPNKATYTLLVDTFKNIGELEMV 509
           LL ACS+RGL +EAEMVFRTMNE G+VP+  TYT LVDTF  +  L+ V
Sbjct: 255 LLCACSNRGLGDEAEMVFRTMNEGGVVPDITTYTYLVDTFGKLNRLDKV 303



 Score = 84.0 bits (206), Expect = 2e-14
 Identities = 47/160 (29%), Positives = 73/160 (45%)
 Frame = +3

Query: 15  CKPNENIYTLIIGVLGREGLLDKCSEIFEEMPSYGVHWTVFTFTALINAYGRNGQYETSL 194
           C PN   Y++++G+ G+ G  D+  E+F EM          T+  LI+ +G  G ++  +
Sbjct: 350 CVPNAETYSILLGLYGKHGRYDEVRELFLEMKVSNTEPDAATYNTLIDVFGEGGYFKEVV 409

Query: 195 HLLARMKREGIAPALVTYNTVITACVRGGLDWEGLLGLFAQMRHDGIQPDIITYNTLLSA 374
            L   M  E + P + TY  +I AC +GGL  +    +   M   G+ P    Y  ++ A
Sbjct: 410 TLFHDMAEENVEPNMETYEGLIFACGKGGLH-DDAKKILLHMSEKGMIPSSKAYTGVIEA 468

Query: 375 CSSRGLLNEAEMVFRTMNEAGIVPNKATYTLLVDTFKNIG 494
                +  EA +   TMNE G  P   TY  L+  F   G
Sbjct: 469 YGQAAMYEEALVTLNTMNEMGSKPTIETYNTLIYMFARGG 508



 Score = 78.6 bits (192), Expect = 8e-13
 Identities = 49/189 (25%), Positives = 86/189 (45%), Gaps = 35/189 (18%)
 Frame = +3

Query: 21  PNENIYTLIIGVLGREGLLDKCSEIFEEM---------PSYGVHWTVF------------ 137
           P+   YT ++   G+   LDK SE+ +EM          SY V    +            
Sbjct: 282 PDITTYTYLVDTFGKLNRLDKVSELLKEMASTGNVPEISSYNVLLEAYARIGNIEDATGV 341

Query: 138 --------------TFTALINAYGRNGQYETSLHLLARMKREGIAPALVTYNTVITACVR 275
                         T++ L+  YG++G+Y+    L   MK     P   TYNT+I     
Sbjct: 342 FRLMQEAGCVPNAETYSILLGLYGKHGRYDEVRELFLEMKVSNTEPDAATYNTLIDVFGE 401

Query: 276 GGLDWEGLLGLFAQMRHDGIQPDIITYNTLLSACSSRGLLNEAEMVFRTMNEAGIVPNKA 455
           GG  ++ ++ LF  M  + ++P++ TY  L+ AC   GL ++A+ +   M+E G++P+  
Sbjct: 402 GGY-FKEVVTLFHDMAEENVEPNMETYEGLIFACGKGGLHDDAKKILLHMSEKGMIPSSK 460

Query: 456 TYTLLVDTF 482
            YT +++ +
Sbjct: 461 AYTGVIEAY 469



 Score = 74.3 bits (181), Expect = 2e-11
 Identities = 47/169 (27%), Positives = 77/169 (45%)
 Frame = +3

Query: 3   RQQWCKPNENIYTLIIGVLGREGLLDKCSEIFEEMPSYGVHWTVFTFTALINAYGRNGQY 182
           R +  +P+   Y  ++      GL D+   +F  M   GV   + T+T L++ +G+  + 
Sbjct: 241 RHEGIQPDIVTYNTLLCACSNRGLGDEAEMVFRTMNEGGVVPDITTYTYLVDTFGKLNRL 300

Query: 183 ETSLHLLARMKREGIAPALVTYNTVITACVRGGLDWEGLLGLFAQMRHDGIQPDIITYNT 362
           +    LL  M   G  P + +YN ++ A  R G + E   G+F  M+  G  P+  TY+ 
Sbjct: 301 DKVSELLKEMASTGNVPEISSYNVLLEAYARIG-NIEDATGVFRLMQEAGCVPNAETYSI 359

Query: 363 LLSACSSRGLLNEAEMVFRTMNEAGIVPNKATYTLLVDTFKNIGELEMV 509
           LL      G  +E   +F  M  +   P+ ATY  L+D F   G  + V
Sbjct: 360 LLGLYGKHGRYDEVRELFLEMKVSNTEPDAATYNTLIDVFGEGGYFKEV 408



 Score = 66.6 bits (161), Expect = 3e-09
 Identities = 48/189 (25%), Positives = 77/189 (40%), Gaps = 34/189 (17%)
 Frame = +3

Query: 18  KPNENIYTLIIGVLGREGLLDKCSEIFEEMPSYGVHWTVFTFTALINAYGRNGQYETSLH 197
           +PN   Y  +I   G+ GL D   +I   M   G+  +   +T +I AYG+   YE +L 
Sbjct: 421 EPNMETYEGLIFACGKGGLHDDAKKILLHMSEKGMIPSSKAYTGVIEAYGQAAMYEEALV 480

Query: 198 LLARMKREGIAPALVTYNTVITACVRGGL------------------------------- 284
            L  M   G  P + TYNT+I    RGGL                               
Sbjct: 481 TLNTMNEMGSKPTIETYNTLIYMFARGGLYKETEAILLKMGDFGVARERDSFNGVIEGFR 540

Query: 285 ---DWEGLLGLFAQMRHDGIQPDIITYNTLLSACSSRGLLNEAEMVFRTMNEAGIVPNKA 455
               +E  +  + +M    + PD  T   +LS     GL++E+   F+ +  +GI+PN  
Sbjct: 541 QGGQFEEAIKAYVEMEKSRLVPDERTLEAVLSVYCIAGLVDESVEQFQEIKASGILPNVM 600

Query: 456 TYTLLVDTF 482
            Y +++  +
Sbjct: 601 CYCMMLAVY 609


>ref|XP_006300609.1| hypothetical protein CARUB_v10019779mg [Capsella rubella]
           gi|482569319|gb|EOA33507.1| hypothetical protein
           CARUB_v10019779mg [Capsella rubella]
          Length = 865

 Score =  256 bits (653), Expect = 3e-66
 Identities = 121/169 (71%), Positives = 145/169 (85%)
 Frame = +3

Query: 3   RQQWCKPNENIYTLIIGVLGREGLLDKCSEIFEEMPSYGVHWTVFTFTALINAYGRNGQY 182
           RQ WCKPNE+IYT++I +LGREGLLDKC E+F+EMP  GV  +VF++TALINAYGRNG+Y
Sbjct: 133 RQIWCKPNEHIYTIMISLLGREGLLDKCLEVFDEMPGQGVSRSVFSYTALINAYGRNGRY 192

Query: 183 ETSLHLLARMKREGIAPALVTYNTVITACVRGGLDWEGLLGLFAQMRHDGIQPDIITYNT 362
           ETSL LL RMK E I+P+++TYNTVI AC RGGLDWEGLLGLFA+MRH+GIQ DI+TYNT
Sbjct: 193 ETSLELLDRMKNEKISPSILTYNTVINACARGGLDWEGLLGLFAEMRHEGIQSDIVTYNT 252

Query: 363 LLSACSSRGLLNEAEMVFRTMNEAGIVPNKATYTLLVDTFKNIGELEMV 509
           LLSAC+ RGL +EAEMVFRTMN+ GIVP+  TY+ LV+TF  +G LE V
Sbjct: 253 LLSACAIRGLGDEAEMVFRTMNDGGIVPDLTTYSHLVETFGKLGRLEKV 301



 Score = 84.3 bits (207), Expect = 1e-14
 Identities = 50/160 (31%), Positives = 75/160 (46%)
 Frame = +3

Query: 15  CKPNENIYTLIIGVLGREGLLDKCSEIFEEMPSYGVHWTVFTFTALINAYGRNGQYETSL 194
           C PN N Y++++ + G+ G  D   ++F EM S        T+  LI  +G  G ++  +
Sbjct: 348 CTPNANTYSVLLNLFGQSGRYDDVRQLFLEMKSSNTDPDAATYNILIEVFGEGGYFKEVV 407

Query: 195 HLLARMKREGIAPALVTYNTVITACVRGGLDWEGLLGLFAQMRHDGIQPDIITYNTLLSA 374
            L   M  E I P + TY  +I AC +GGL  E    +   M  + I P    Y  ++ A
Sbjct: 408 TLFHDMVEENIEPDMETYEGIIFACGKGGLQ-EDARKILQYMTANDIVPSSKAYTGVIEA 466

Query: 375 CSSRGLLNEAEMVFRTMNEAGIVPNKATYTLLVDTFKNIG 494
                L  EA + F TM+E G  P+  TY  L+ +F   G
Sbjct: 467 FGQAALYEEALVAFNTMHEVGSNPSIETYHSLLYSFARGG 506



 Score = 81.3 bits (199), Expect = 1e-13
 Identities = 42/154 (27%), Positives = 77/154 (50%)
 Frame = +3

Query: 21  PNENIYTLIIGVLGREGLLDKCSEIFEEMPSYGVHWTVFTFTALINAYGRNGQYETSLHL 200
           P+   Y +++    + G + +   +F +M + G      T++ L+N +G++G+Y+    L
Sbjct: 315 PDITSYNVLLEAYAKSGSIKESMGVFHQMQAAGCTPNANTYSVLLNLFGQSGRYDDVRQL 374

Query: 201 LARMKREGIAPALVTYNTVITACVRGGLDWEGLLGLFAQMRHDGIQPDIITYNTLLSACS 380
              MK     P   TYN +I     GG  ++ ++ LF  M  + I+PD+ TY  ++ AC 
Sbjct: 375 FLEMKSSNTDPDAATYNILIEVFGEGGY-FKEVVTLFHDMVEENIEPDMETYEGIIFACG 433

Query: 381 SRGLLNEAEMVFRTMNEAGIVPNKATYTLLVDTF 482
             GL  +A  + + M    IVP+   YT +++ F
Sbjct: 434 KGGLQEDARKILQYMTANDIVPSSKAYTGVIEAF 467



 Score = 58.5 bits (140), Expect = 9e-07
 Identities = 39/154 (25%), Positives = 71/154 (46%)
 Frame = +3

Query: 21  PNENIYTLIIGVLGREGLLDKCSEIFEEMPSYGVHWTVFTFTALINAYGRNGQYETSLHL 200
           P+   YT +I   G+  L ++    F  M   G + ++ T+ +L+ ++ R G  + S  +
Sbjct: 455 PSSKAYTGVIEAFGQAALYEEALVAFNTMHEVGSNPSIETYHSLLYSFARGGLVKESEAI 514

Query: 201 LARMKREGIAPALVTYNTVITACVRGGLDWEGLLGLFAQMRHDGIQPDIITYNTLLSACS 380
           L+R+   GI     T+N  I A  +GG  +E  +  +  M      PD  T   +LS  S
Sbjct: 515 LSRLVDSGIPRNRDTFNAQIEAYKQGGR-FEEAVKTYVDMEKSRCDPDERTLEAVLSVYS 573

Query: 381 SRGLLNEAEMVFRTMNEAGIVPNKATYTLLVDTF 482
              L++E    F  M  + I+P+   Y +++  +
Sbjct: 574 FARLVDECREQFEEMKASDILPSIMCYCMMLAVY 607



 Score = 55.1 bits (131), Expect = 1e-05
 Identities = 37/155 (23%), Positives = 73/155 (47%)
 Frame = +3

Query: 18  KPNENIYTLIIGVLGREGLLDKCSEIFEEMPSYGVHWTVFTFTALINAYGRNGQYETSLH 197
           +P+   Y  II   G+ GL +   +I + M +  +  +   +T +I A+G+   YE +L 
Sbjct: 419 EPDMETYEGIIFACGKGGLQEDARKILQYMTANDIVPSSKAYTGVIEAFGQAALYEEALV 478

Query: 198 LLARMKREGIAPALVTYNTVITACVRGGLDWEGLLGLFAQMRHDGIQPDIITYNTLLSAC 377
               M   G  P++ TY++++ +  RGGL  E    + +++   GI  +  T+N  + A 
Sbjct: 479 AFNTMHEVGSNPSIETYHSLLYSFARGGLVKES-EAILSRLVDSGIPRNRDTFNAQIEAY 537

Query: 378 SSRGLLNEAEMVFRTMNEAGIVPNKATYTLLVDTF 482
              G   EA   +  M ++   P++ T   ++  +
Sbjct: 538 KQGGRFEEAVKTYVDMEKSRCDPDERTLEAVLSVY 572


>ref|XP_006344988.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74850,
           chloroplastic-like [Solanum tuberosum]
          Length = 860

 Score =  255 bits (652), Expect = 4e-66
 Identities = 119/169 (70%), Positives = 147/169 (86%)
 Frame = +3

Query: 3   RQQWCKPNENIYTLIIGVLGREGLLDKCSEIFEEMPSYGVHWTVFTFTALINAYGRNGQY 182
           RQ WCKPNE+IYTL+IG+LGREGLLDK  EIF+EM ++ V  TVF++TA+INAYGRNGQY
Sbjct: 128 RQIWCKPNEHIYTLMIGILGREGLLDKAFEIFDEMSTHSVARTVFSYTAIINAYGRNGQY 187

Query: 183 ETSLHLLARMKREGIAPALVTYNTVITACVRGGLDWEGLLGLFAQMRHDGIQPDIITYNT 362
           ETSL LL +MK+E I P+++TYNTVI +C RGG +WEGLLGLFA+MRH+GIQPD++TYNT
Sbjct: 188 ETSLQLLEKMKQENIVPSILTYNTVINSCARGGYEWEGLLGLFAEMRHEGIQPDLVTYNT 247

Query: 363 LLSACSSRGLLNEAEMVFRTMNEAGIVPNKATYTLLVDTFKNIGELEMV 509
           LLSACSSR L +EAEMVFRTMNEAG++P+  TY+ LV+TF  +G+LE V
Sbjct: 248 LLSACSSRELEDEAEMVFRTMNEAGVLPDVTTYSYLVETFGKLGKLEKV 296



 Score = 84.7 bits (208), Expect = 1e-14
 Identities = 43/154 (27%), Positives = 78/154 (50%)
 Frame = +3

Query: 21  PNENIYTLIIGVLGREGLLDKCSEIFEEMPSYGVHWTVFTFTALINAYGRNGQYETSLHL 200
           P    Y +++      G + +  ++F +M + G      T++ L+N YG+NG+Y+    L
Sbjct: 310 PEVTSYNVLLEAYAHLGSMKEAMDVFRQMQAAGCVANAETYSILLNLYGKNGRYDQVREL 369

Query: 201 LARMKREGIAPALVTYNTVITACVRGGLDWEGLLGLFAQMRHDGIQPDIITYNTLLSACS 380
              MK     P   TYN +I     GG  ++ ++ LF  M  + ++P++ TY  L+ AC 
Sbjct: 370 FLEMKTSNTEPDADTYNILIQVFGEGGY-FKEVVTLFHDMVEEKVEPNMETYEGLIYACG 428

Query: 381 SRGLLNEAEMVFRTMNEAGIVPNKATYTLLVDTF 482
             GL  +A+ +   MN  G+VP+   YT +++ +
Sbjct: 429 KGGLHEDAKRILLHMNGQGLVPSSKVYTAVIEAY 462



 Score = 84.3 bits (207), Expect = 1e-14
 Identities = 48/160 (30%), Positives = 73/160 (45%)
 Frame = +3

Query: 15  CKPNENIYTLIIGVLGREGLLDKCSEIFEEMPSYGVHWTVFTFTALINAYGRNGQYETSL 194
           C  N   Y++++ + G+ G  D+  E+F EM +        T+  LI  +G  G ++  +
Sbjct: 343 CVANAETYSILLNLYGKNGRYDQVRELFLEMKTSNTEPDADTYNILIQVFGEGGYFKEVV 402

Query: 195 HLLARMKREGIAPALVTYNTVITACVRGGLDWEGLLGLFAQMRHDGIQPDIITYNTLLSA 374
            L   M  E + P + TY  +I AC +GGL  E    +   M   G+ P    Y  ++ A
Sbjct: 403 TLFHDMVEEKVEPNMETYEGLIYACGKGGLH-EDAKRILLHMNGQGLVPSSKVYTAVIEA 461

Query: 375 CSSRGLLNEAEMVFRTMNEAGIVPNKATYTLLVDTFKNIG 494
                L  EA + F TMNE G  P   T+  L+ TF   G
Sbjct: 462 YGQAALYEEAVVAFNTMNEVGSRPMVETFNSLIHTFAKGG 501



 Score = 55.8 bits (133), Expect = 6e-06
 Identities = 38/155 (24%), Positives = 71/155 (45%)
 Frame = +3

Query: 18  KPNENIYTLIIGVLGREGLLDKCSEIFEEMPSYGVHWTVFTFTALINAYGRNGQYETSLH 197
           +PN   Y  +I   G+ GL +    I   M   G+  +   +TA+I AYG+   YE ++ 
Sbjct: 414 EPNMETYEGLIYACGKGGLHEDAKRILLHMNGQGLVPSSKVYTAVIEAYGQAALYEEAVV 473

Query: 198 LLARMKREGIAPALVTYNTVITACVRGGLDWEGLLGLFAQMRHDGIQPDIITYNTLLSAC 377
               M   G  P + T+N++I    +GGL ++    ++ +M   G+  +  ++N L+   
Sbjct: 474 AFNTMNEVGSRPMVETFNSLIHTFAKGGL-YKESEAIWFRMGEVGVPRNRDSFNGLIEGY 532

Query: 378 SSRGLLNEAEMVFRTMNEAGIVPNKATYTLLVDTF 482
              G   EA   +  M +A   P++ T   ++  +
Sbjct: 533 RQGGQFEEAIKAYVEMEKARCDPDERTLEAVLSVY 567


>ref|XP_006439718.1| hypothetical protein CICLE_v10018817mg [Citrus clementina]
           gi|557541980|gb|ESR52958.1| hypothetical protein
           CICLE_v10018817mg [Citrus clementina]
          Length = 871

 Score =  255 bits (652), Expect = 4e-66
 Identities = 122/169 (72%), Positives = 145/169 (85%)
 Frame = +3

Query: 3   RQQWCKPNENIYTLIIGVLGREGLLDKCSEIFEEMPSYGVHWTVFTFTALINAYGRNGQY 182
           RQ WCKP+E IYT++I +LGRE LLDK SE+FEEMPS GV  +VF++TALINAYGR+GQY
Sbjct: 139 RQIWCKPSEQIYTIMISLLGRENLLDKASEVFEEMPSQGVARSVFSYTALINAYGRHGQY 198

Query: 183 ETSLHLLARMKREGIAPALVTYNTVITACVRGGLDWEGLLGLFAQMRHDGIQPDIITYNT 362
           ETSL LL RMKRE IAP ++TYNTVI ACVRGGLDWE LLGLFA+MRH+GIQPDI+TYNT
Sbjct: 199 ETSLELLDRMKREKIAPNILTYNTVINACVRGGLDWEDLLGLFAEMRHEGIQPDIVTYNT 258

Query: 363 LLSACSSRGLLNEAEMVFRTMNEAGIVPNKATYTLLVDTFKNIGELEMV 509
           LLSAC  RGL +EAEMVFRTMNE G++P+  T++ LV+TF  +G+LE V
Sbjct: 259 LLSACGGRGLGDEAEMVFRTMNEGGVLPDLTTFSYLVETFGKLGKLEKV 307



 Score = 87.8 bits (216), Expect = 1e-15
 Identities = 44/154 (28%), Positives = 79/154 (51%)
 Frame = +3

Query: 21  PNENIYTLIIGVLGREGLLDKCSEIFEEMPSYGVHWTVFTFTALINAYGRNGQYETSLHL 200
           P+   Y +++    + G + +  ++F +M + G      T++ L+N YGRNG+Y+    L
Sbjct: 321 PDVTCYNVLLEAHAKMGSIKEAMDVFRQMQAAGSVANATTYSILLNLYGRNGRYDDVREL 380

Query: 201 LARMKREGIAPALVTYNTVITACVRGGLDWEGLLGLFAQMRHDGIQPDIITYNTLLSACS 380
              MK     P   TYN +I     GG  ++ ++ LF  M  + ++P++ TY  L+ AC 
Sbjct: 381 FLEMKASNTEPNAATYNILIQVFGEGGY-FKEVVTLFHDMVEENVEPNMETYEGLIFACG 439

Query: 381 SRGLLNEAEMVFRTMNEAGIVPNKATYTLLVDTF 482
             GL  + + +   MNE G VP+   YT +++ +
Sbjct: 440 KGGLHEDVKKILLYMNERGTVPSSKAYTGVIEAY 473



 Score = 79.7 bits (195), Expect = 4e-13
 Identities = 48/157 (30%), Positives = 70/157 (44%)
 Frame = +3

Query: 24  NENIYTLIIGVLGREGLLDKCSEIFEEMPSYGVHWTVFTFTALINAYGRNGQYETSLHLL 203
           N   Y++++ + GR G  D   E+F EM +        T+  LI  +G  G ++  + L 
Sbjct: 357 NATTYSILLNLYGRNGRYDDVRELFLEMKASNTEPNAATYNILIQVFGEGGYFKEVVTLF 416

Query: 204 ARMKREGIAPALVTYNTVITACVRGGLDWEGLLGLFAQMRHDGIQPDIITYNTLLSACSS 383
             M  E + P + TY  +I AC +GGL  E +  +   M   G  P    Y  ++ A   
Sbjct: 417 HDMVEENVEPNMETYEGLIFACGKGGLH-EDVKKILLYMNERGTVPSSKAYTGVIEAYGL 475

Query: 384 RGLLNEAEMVFRTMNEAGIVPNKATYTLLVDTFKNIG 494
             L  EA + F TMNE    P   TY  L+ TF   G
Sbjct: 476 AALYEEALVAFNTMNEVESKPTIETYNSLLHTFARGG 512



 Score = 73.2 bits (178), Expect = 3e-11
 Identities = 47/169 (27%), Positives = 78/169 (46%)
 Frame = +3

Query: 3   RQQWCKPNENIYTLIIGVLGREGLLDKCSEIFEEMPSYGVHWTVFTFTALINAYGRNGQY 182
           R +  +P+   Y  ++   G  GL D+   +F  M   GV   + TF+ L+  +G+ G+ 
Sbjct: 245 RHEGIQPDIVTYNTLLSACGGRGLGDEAEMVFRTMNEGGVLPDLTTFSYLVETFGKLGKL 304

Query: 183 ETSLHLLARMKREGIAPALVTYNTVITACVRGGLDWEGLLGLFAQMRHDGIQPDIITYNT 362
           E    LL  M+  G  P +  YN ++ A  + G   E  + +F QM+  G   +  TY+ 
Sbjct: 305 EKVSELLREMESGGNLPDVTCYNVLLEAHAKMGSIKEA-MDVFRQMQAAGSVANATTYSI 363

Query: 363 LLSACSSRGLLNEAEMVFRTMNEAGIVPNKATYTLLVDTFKNIGELEMV 509
           LL+     G  ++   +F  M  +   PN ATY +L+  F   G  + V
Sbjct: 364 LLNLYGRNGRYDDVRELFLEMKASNTEPNAATYNILIQVFGEGGYFKEV 412



 Score = 65.5 bits (158), Expect = 7e-09
 Identities = 40/154 (25%), Positives = 75/154 (48%)
 Frame = +3

Query: 21  PNENIYTLIIGVLGREGLLDKCSEIFEEMPSYGVHWTVFTFTALINAYGRNGQYETSLHL 200
           P+   YT +I   G   L ++    F  M       T+ T+ +L++ + R G Y+    +
Sbjct: 461 PSSKAYTGVIEAYGLAALYEEALVAFNTMNEVESKPTIETYNSLLHTFARGGLYKECQAI 520

Query: 201 LARMKREGIAPALVTYNTVITACVRGGLDWEGLLGLFAQMRHDGIQPDIITYNTLLSACS 380
           L+RM   G+A    ++N VI A  +GG  +E  +  + +M      P+  T   +LS   
Sbjct: 521 LSRMSESGVARNSDSFNAVIEAFRQGG-RFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 579

Query: 381 SRGLLNEAEMVFRTMNEAGIVPNKATYTLLVDTF 482
             GL++E++  F+ +  +GI+P+   Y +L+  +
Sbjct: 580 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVY 613



 Score = 57.4 bits (137), Expect = 2e-06
 Identities = 38/155 (24%), Positives = 68/155 (43%)
 Frame = +3

Query: 18  KPNENIYTLIIGVLGREGLLDKCSEIFEEMPSYGVHWTVFTFTALINAYGRNGQYETSLH 197
           +PN   Y  +I   G+ GL +   +I   M   G   +   +T +I AYG    YE +L 
Sbjct: 425 EPNMETYEGLIFACGKGGLHEDVKKILLYMNERGTVPSSKAYTGVIEAYGLAALYEEALV 484

Query: 198 LLARMKREGIAPALVTYNTVITACVRGGLDWEGLLGLFAQMRHDGIQPDIITYNTLLSAC 377
               M      P + TYN+++    RGGL ++    + ++M   G+  +  ++N ++ A 
Sbjct: 485 AFNTMNEVESKPTIETYNSLLHTFARGGL-YKECQAILSRMSESGVARNSDSFNAVIEAF 543

Query: 378 SSRGLLNEAEMVFRTMNEAGIVPNKATYTLLVDTF 482
              G   EA   +  M +    PN+ T   ++  +
Sbjct: 544 RQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVY 578


>ref|XP_006390383.1| hypothetical protein EUTSA_v10018112mg [Eutrema salsugineum]
           gi|557086817|gb|ESQ27669.1| hypothetical protein
           EUTSA_v10018112mg [Eutrema salsugineum]
          Length = 863

 Score =  255 bits (652), Expect = 4e-66
 Identities = 122/169 (72%), Positives = 145/169 (85%)
 Frame = +3

Query: 3   RQQWCKPNENIYTLIIGVLGREGLLDKCSEIFEEMPSYGVHWTVFTFTALINAYGRNGQY 182
           RQ WCKPNE+IYT++I +LGREGLLDKC EIF+EMPS GV  +VF++TALINAYGRNG+Y
Sbjct: 132 RQIWCKPNEHIYTIMISLLGREGLLDKCLEIFDEMPSQGVARSVFSYTALINAYGRNGRY 191

Query: 183 ETSLHLLARMKREGIAPALVTYNTVITACVRGGLDWEGLLGLFAQMRHDGIQPDIITYNT 362
           ETSL LL RMK E I+P+++TYNTVI AC RGGLDWEGLLGLFA+MRH+GIQPDI+TYNT
Sbjct: 192 ETSLELLDRMKNEKISPSILTYNTVINACARGGLDWEGLLGLFAEMRHEGIQPDIVTYNT 251

Query: 363 LLSACSSRGLLNEAEMVFRTMNEAGIVPNKATYTLLVDTFKNIGELEMV 509
           LLSAC+ RGL +EAEMVFRTMN+ GIVP+  TY+ LV+TF  +  L  V
Sbjct: 252 LLSACAIRGLGDEAEMVFRTMNDGGIVPDLTTYSHLVETFGKLSRLVKV 300



 Score = 82.4 bits (202), Expect = 6e-14
 Identities = 49/160 (30%), Positives = 74/160 (46%)
 Frame = +3

Query: 15  CKPNENIYTLIIGVLGREGLLDKCSEIFEEMPSYGVHWTVFTFTALINAYGRNGQYETSL 194
           C PN N Y++++ + G+ G  D   ++F EM S        T+  LI  +G  G ++  +
Sbjct: 347 CTPNANTYSVLLNLFGQSGRYDDVRQLFLEMKSSNTDPDAATYNILIEVFGEGGYFKEVV 406

Query: 195 HLLARMKREGIAPALVTYNTVITACVRGGLDWEGLLGLFAQMRHDGIQPDIITYNTLLSA 374
            L   M  E I P + TY  +I AC +GGL  E    +   M    + P    Y  ++ A
Sbjct: 407 TLFHDMVEENIEPDMETYEGIIFACGKGGLH-EDARKVLQYMTAKDVVPSSKAYTGVIEA 465

Query: 375 CSSRGLLNEAEMVFRTMNEAGIVPNKATYTLLVDTFKNIG 494
                L  EA + F TM+E G  P+  TY  L+ +F   G
Sbjct: 466 FGQAALYEEALVAFNTMHEVGSNPSIETYHSLLYSFARGG 505



 Score = 81.6 bits (200), Expect = 1e-13
 Identities = 42/154 (27%), Positives = 77/154 (50%)
 Frame = +3

Query: 21  PNENIYTLIIGVLGREGLLDKCSEIFEEMPSYGVHWTVFTFTALINAYGRNGQYETSLHL 200
           P+   Y +++    + G + +   +F +M + G      T++ L+N +G++G+Y+    L
Sbjct: 314 PDITSYNVLLEAYAKSGSIKEAMGVFHQMQAAGCTPNANTYSVLLNLFGQSGRYDDVRQL 373

Query: 201 LARMKREGIAPALVTYNTVITACVRGGLDWEGLLGLFAQMRHDGIQPDIITYNTLLSACS 380
              MK     P   TYN +I     GG  ++ ++ LF  M  + I+PD+ TY  ++ AC 
Sbjct: 374 FLEMKSSNTDPDAATYNILIEVFGEGGY-FKEVVTLFHDMVEENIEPDMETYEGIIFACG 432

Query: 381 SRGLLNEAEMVFRTMNEAGIVPNKATYTLLVDTF 482
             GL  +A  V + M    +VP+   YT +++ F
Sbjct: 433 KGGLHEDARKVLQYMTAKDVVPSSKAYTGVIEAF 466



 Score = 60.8 bits (146), Expect = 2e-07
 Identities = 39/154 (25%), Positives = 72/154 (46%)
 Frame = +3

Query: 21  PNENIYTLIIGVLGREGLLDKCSEIFEEMPSYGVHWTVFTFTALINAYGRNGQYETSLHL 200
           P+   YT +I   G+  L ++    F  M   G + ++ T+ +L+ ++ R G ++ S  +
Sbjct: 454 PSSKAYTGVIEAFGQAALYEEALVAFNTMHEVGSNPSIETYHSLLYSFARGGLFKESEVI 513

Query: 201 LARMKREGIAPALVTYNTVITACVRGGLDWEGLLGLFAQMRHDGIQPDIITYNTLLSACS 380
           L+R+   GI     T+N  I A  +GG  +E  +  +  M      PD  T   +LS  S
Sbjct: 514 LSRLVDSGIPRNRDTFNAQIEAYRQGG-KFEEAVKTYVDMEKSRCDPDERTLEAVLSVYS 572

Query: 381 SRGLLNEAEMVFRTMNEAGIVPNKATYTLLVDTF 482
              L++E    F  M  + I+P+   Y +++  +
Sbjct: 573 CARLVDECREQFEEMKASDILPSIMCYCMMLSVY 606


>ref|XP_004157803.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74850,
           chloroplastic-like [Cucumis sativus]
          Length = 864

 Score =  254 bits (650), Expect = 6e-66
 Identities = 120/169 (71%), Positives = 146/169 (86%)
 Frame = +3

Query: 3   RQQWCKPNENIYTLIIGVLGREGLLDKCSEIFEEMPSYGVHWTVFTFTALINAYGRNGQY 182
           RQ WCKPNE+IYT+II +LGREGLL+KCSEIF+EM S GV  +VF++TALINAYGRNGQY
Sbjct: 140 RQIWCKPNEHIYTIIISLLGREGLLEKCSEIFDEMASQGVIRSVFSYTALINAYGRNGQY 199

Query: 183 ETSLHLLARMKREGIAPALVTYNTVITACVRGGLDWEGLLGLFAQMRHDGIQPDIITYNT 362
           ETSL LL RMKRE ++P ++TYNTVI AC RG LDWEGLLGLFA+MRH+G+QPD++TYNT
Sbjct: 200 ETSLELLERMKRERVSPNILTYNTVINACARGDLDWEGLLGLFAEMRHEGVQPDLVTYNT 259

Query: 363 LLSACSSRGLLNEAEMVFRTMNEAGIVPNKATYTLLVDTFKNIGELEMV 509
           LLSAC++RGL +EAEMVF+TM E GIVP   TY+ +V+TF  +G+LE V
Sbjct: 260 LLSACAARGLGDEAEMVFKTMIEGGIVPEITTYSYIVETFGKLGKLEKV 308



 Score = 84.7 bits (208), Expect = 1e-14
 Identities = 50/160 (31%), Positives = 75/160 (46%)
 Frame = +3

Query: 15  CKPNENIYTLIIGVLGREGLLDKCSEIFEEMPSYGVHWTVFTFTALINAYGRNGQYETSL 194
           C PN + Y++++ + G+ G  D   E+F +M          T+  LI  +G  G ++  +
Sbjct: 355 CVPNASTYSILLNLYGKHGRYDDVRELFLQMKESSAEPDATTYNILIRVFGEGGYFKEVV 414

Query: 195 HLLARMKREGIAPALVTYNTVITACVRGGLDWEGLLGLFAQMRHDGIQPDIITYNTLLSA 374
            L   +  E I P + TY  ++ AC +GGL  +    LF  M   GI P    Y+ L+ A
Sbjct: 415 TLFHDLVDENIDPNMETYEGLVFACGKGGLHEDAKKILF-HMNGKGIVPSSKAYSGLIEA 473

Query: 375 CSSRGLLNEAEMVFRTMNEAGIVPNKATYTLLVDTFKNIG 494
                L +EA + F TMNE G      TY  L+ TF   G
Sbjct: 474 YGQAALYDEALVAFNTMNEVGSKSTIDTYNSLIHTFARGG 513



 Score = 83.6 bits (205), Expect = 3e-14
 Identities = 44/154 (28%), Positives = 82/154 (53%)
 Frame = +3

Query: 21  PNENIYTLIIGVLGREGLLDKCSEIFEEMPSYGVHWTVFTFTALINAYGRNGQYETSLHL 200
           P+ + Y ++I    + G + +  ++F++M + G      T++ L+N YG++G+Y+    L
Sbjct: 322 PDISSYNVLIEAHAKLGSIKEAMDVFKQMQAAGCVPNASTYSILLNLYGKHGRYDDVREL 381

Query: 201 LARMKREGIAPALVTYNTVITACVRGGLDWEGLLGLFAQMRHDGIQPDIITYNTLLSACS 380
             +MK     P   TYN +I     GG  ++ ++ LF  +  + I P++ TY  L+ AC 
Sbjct: 382 FLQMKESSAEPDATTYNILIRVFGEGGY-FKEVVTLFHDLVDENIDPNMETYEGLVFACG 440

Query: 381 SRGLLNEAEMVFRTMNEAGIVPNKATYTLLVDTF 482
             GL  +A+ +   MN  GIVP+   Y+ L++ +
Sbjct: 441 KGGLHEDAKKILFHMNGKGIVPSSKAYSGLIEAY 474



 Score = 75.1 bits (183), Expect = 9e-12
 Identities = 45/169 (26%), Positives = 81/169 (47%)
 Frame = +3

Query: 3   RQQWCKPNENIYTLIIGVLGREGLLDKCSEIFEEMPSYGVHWTVFTFTALINAYGRNGQY 182
           R +  +P+   Y  ++      GL D+   +F+ M   G+   + T++ ++  +G+ G+ 
Sbjct: 246 RHEGVQPDLVTYNTLLSACAARGLGDEAEMVFKTMIEGGIVPEITTYSYIVETFGKLGKL 305

Query: 183 ETSLHLLARMKREGIAPALVTYNTVITACVRGGLDWEGLLGLFAQMRHDGIQPDIITYNT 362
           E    LL  M+ EG  P + +YN +I A  + G   E +  +F QM+  G  P+  TY+ 
Sbjct: 306 EKVAMLLKEMESEGYLPDISSYNVLIEAHAKLGSIKEAM-DVFKQMQAAGCVPNASTYSI 364

Query: 363 LLSACSSRGLLNEAEMVFRTMNEAGIVPNKATYTLLVDTFKNIGELEMV 509
           LL+     G  ++   +F  M E+   P+  TY +L+  F   G  + V
Sbjct: 365 LLNLYGKHGRYDDVRELFLQMKESSAEPDATTYNILIRVFGEGGYFKEV 413


>ref|XP_004152453.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74850,
           chloroplastic-like [Cucumis sativus]
          Length = 864

 Score =  254 bits (650), Expect = 6e-66
 Identities = 120/169 (71%), Positives = 146/169 (86%)
 Frame = +3

Query: 3   RQQWCKPNENIYTLIIGVLGREGLLDKCSEIFEEMPSYGVHWTVFTFTALINAYGRNGQY 182
           RQ WCKPNE+IYT+II +LGREGLL+KCSEIF+EM S GV  +VF++TALINAYGRNGQY
Sbjct: 140 RQIWCKPNEHIYTIIISLLGREGLLEKCSEIFDEMASQGVIRSVFSYTALINAYGRNGQY 199

Query: 183 ETSLHLLARMKREGIAPALVTYNTVITACVRGGLDWEGLLGLFAQMRHDGIQPDIITYNT 362
           ETSL LL RMKRE ++P ++TYNTVI AC RG LDWEGLLGLFA+MRH+G+QPD++TYNT
Sbjct: 200 ETSLELLERMKRERVSPNILTYNTVINACARGDLDWEGLLGLFAEMRHEGVQPDLVTYNT 259

Query: 363 LLSACSSRGLLNEAEMVFRTMNEAGIVPNKATYTLLVDTFKNIGELEMV 509
           LLSAC++RGL +EAEMVF+TM E GIVP   TY+ +V+TF  +G+LE V
Sbjct: 260 LLSACAARGLGDEAEMVFKTMIEGGIVPEITTYSYIVETFGKLGKLEKV 308



 Score = 84.7 bits (208), Expect = 1e-14
 Identities = 50/160 (31%), Positives = 75/160 (46%)
 Frame = +3

Query: 15  CKPNENIYTLIIGVLGREGLLDKCSEIFEEMPSYGVHWTVFTFTALINAYGRNGQYETSL 194
           C PN + Y++++ + G+ G  D   E+F +M          T+  LI  +G  G ++  +
Sbjct: 355 CVPNASTYSILLNLYGKHGRYDDVRELFLQMKESSAEPDATTYNILIRVFGEGGYFKEVV 414

Query: 195 HLLARMKREGIAPALVTYNTVITACVRGGLDWEGLLGLFAQMRHDGIQPDIITYNTLLSA 374
            L   +  E I P + TY  ++ AC +GGL  +    LF  M   GI P    Y+ L+ A
Sbjct: 415 TLFHDLVDENIDPNMETYEGLVFACGKGGLHEDAKKILF-HMNGKGIVPSSKAYSGLIEA 473

Query: 375 CSSRGLLNEAEMVFRTMNEAGIVPNKATYTLLVDTFKNIG 494
                L +EA + F TMNE G      TY  L+ TF   G
Sbjct: 474 YGQAALYDEALVAFNTMNEVGSKSTIDTYNSLIHTFARGG 513



 Score = 83.6 bits (205), Expect = 3e-14
 Identities = 44/154 (28%), Positives = 82/154 (53%)
 Frame = +3

Query: 21  PNENIYTLIIGVLGREGLLDKCSEIFEEMPSYGVHWTVFTFTALINAYGRNGQYETSLHL 200
           P+ + Y ++I    + G + +  ++F++M + G      T++ L+N YG++G+Y+    L
Sbjct: 322 PDISSYNVLIEAHAKLGSIKEAMDVFKQMQAAGCVPNASTYSILLNLYGKHGRYDDVREL 381

Query: 201 LARMKREGIAPALVTYNTVITACVRGGLDWEGLLGLFAQMRHDGIQPDIITYNTLLSACS 380
             +MK     P   TYN +I     GG  ++ ++ LF  +  + I P++ TY  L+ AC 
Sbjct: 382 FLQMKESSAEPDATTYNILIRVFGEGGY-FKEVVTLFHDLVDENIDPNMETYEGLVFACG 440

Query: 381 SRGLLNEAEMVFRTMNEAGIVPNKATYTLLVDTF 482
             GL  +A+ +   MN  GIVP+   Y+ L++ +
Sbjct: 441 KGGLHEDAKKILFHMNGKGIVPSSKAYSGLIEAY 474



 Score = 75.1 bits (183), Expect = 9e-12
 Identities = 45/169 (26%), Positives = 81/169 (47%)
 Frame = +3

Query: 3   RQQWCKPNENIYTLIIGVLGREGLLDKCSEIFEEMPSYGVHWTVFTFTALINAYGRNGQY 182
           R +  +P+   Y  ++      GL D+   +F+ M   G+   + T++ ++  +G+ G+ 
Sbjct: 246 RHEGVQPDLVTYNTLLSACAARGLGDEAEMVFKTMIEGGIVPEITTYSYIVETFGKLGKL 305

Query: 183 ETSLHLLARMKREGIAPALVTYNTVITACVRGGLDWEGLLGLFAQMRHDGIQPDIITYNT 362
           E    LL  M+ EG  P + +YN +I A  + G   E +  +F QM+  G  P+  TY+ 
Sbjct: 306 EKVAMLLKEMESEGYLPDISSYNVLIEAHAKLGSIKEAM-DVFKQMQAAGCVPNASTYSI 364

Query: 363 LLSACSSRGLLNEAEMVFRTMNEAGIVPNKATYTLLVDTFKNIGELEMV 509
           LL+     G  ++   +F  M E+   P+  TY +L+  F   G  + V
Sbjct: 365 LLNLYGKHGRYDDVRELFLQMKESSAEPDATTYNILIRVFGEGGYFKEV 413


>ref|XP_004236160.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74850,
           chloroplastic-like [Solanum lycopersicum]
          Length = 860

 Score =  254 bits (649), Expect = 8e-66
 Identities = 118/169 (69%), Positives = 147/169 (86%)
 Frame = +3

Query: 3   RQQWCKPNENIYTLIIGVLGREGLLDKCSEIFEEMPSYGVHWTVFTFTALINAYGRNGQY 182
           RQ WCKPNE+IYTL+IG+LGREGLLDK  EIF+EM ++ V  TVF++TA+IN+YGRNGQY
Sbjct: 128 RQIWCKPNEHIYTLMIGILGREGLLDKAFEIFDEMSTHNVARTVFSYTAIINSYGRNGQY 187

Query: 183 ETSLHLLARMKREGIAPALVTYNTVITACVRGGLDWEGLLGLFAQMRHDGIQPDIITYNT 362
           ETSL LL +MK+E I P+++TYNTVI +C RGG +WEGLLGLFA+MRH+GIQPD++TYNT
Sbjct: 188 ETSLQLLEKMKQENIVPSILTYNTVINSCARGGYEWEGLLGLFAEMRHEGIQPDLVTYNT 247

Query: 363 LLSACSSRGLLNEAEMVFRTMNEAGIVPNKATYTLLVDTFKNIGELEMV 509
           LLSACSSR L +EAEMVFRTMNEAG++P+  TY+ LV+TF  +G+LE V
Sbjct: 248 LLSACSSRELEDEAEMVFRTMNEAGVLPDVTTYSYLVETFGKLGKLEKV 296



 Score = 84.7 bits (208), Expect = 1e-14
 Identities = 43/154 (27%), Positives = 78/154 (50%)
 Frame = +3

Query: 21  PNENIYTLIIGVLGREGLLDKCSEIFEEMPSYGVHWTVFTFTALINAYGRNGQYETSLHL 200
           P    Y +++      G + +  ++F +M + G      T++ L+N YG+NG+Y+    L
Sbjct: 310 PEVTSYNVLLEAYAHLGSMKEAMDVFRQMQAAGCVANAETYSILLNLYGKNGRYDQVREL 369

Query: 201 LARMKREGIAPALVTYNTVITACVRGGLDWEGLLGLFAQMRHDGIQPDIITYNTLLSACS 380
              MK     P   TYN +I     GG  ++ ++ LF  M  + ++P++ TY  L+ AC 
Sbjct: 370 FLEMKTSNTEPDADTYNILIQVFGEGGY-FKEVVTLFHDMVEEKVEPNMETYEGLIYACG 428

Query: 381 SRGLLNEAEMVFRTMNEAGIVPNKATYTLLVDTF 482
             GL  +A+ +   MN  G+VP+   YT +++ +
Sbjct: 429 KGGLHEDAKRILLHMNGQGLVPSSKVYTAVIEAY 462



 Score = 84.0 bits (206), Expect = 2e-14
 Identities = 48/160 (30%), Positives = 73/160 (45%)
 Frame = +3

Query: 15  CKPNENIYTLIIGVLGREGLLDKCSEIFEEMPSYGVHWTVFTFTALINAYGRNGQYETSL 194
           C  N   Y++++ + G+ G  D+  E+F EM +        T+  LI  +G  G ++  +
Sbjct: 343 CVANAETYSILLNLYGKNGRYDQVRELFLEMKTSNTEPDADTYNILIQVFGEGGYFKEVV 402

Query: 195 HLLARMKREGIAPALVTYNTVITACVRGGLDWEGLLGLFAQMRHDGIQPDIITYNTLLSA 374
            L   M  E + P + TY  +I AC +GGL  E    +   M   G+ P    Y  ++ A
Sbjct: 403 TLFHDMVEEKVEPNMETYEGLIYACGKGGLH-EDAKRILLHMNGQGLVPSSKVYTAVIEA 461

Query: 375 CSSRGLLNEAEMVFRTMNEAGIVPNKATYTLLVDTFKNIG 494
                L  EA + F TMNE G  P   T+  L+ TF   G
Sbjct: 462 YGQAALYEEAVVAFNTMNEVGSRPVVETFNSLIHTFAKGG 501



 Score = 55.5 bits (132), Expect = 7e-06
 Identities = 37/155 (23%), Positives = 71/155 (45%)
 Frame = +3

Query: 18  KPNENIYTLIIGVLGREGLLDKCSEIFEEMPSYGVHWTVFTFTALINAYGRNGQYETSLH 197
           +PN   Y  +I   G+ GL +    I   M   G+  +   +TA+I AYG+   YE ++ 
Sbjct: 414 EPNMETYEGLIYACGKGGLHEDAKRILLHMNGQGLVPSSKVYTAVIEAYGQAALYEEAVV 473

Query: 198 LLARMKREGIAPALVTYNTVITACVRGGLDWEGLLGLFAQMRHDGIQPDIITYNTLLSAC 377
               M   G  P + T+N++I    +GGL ++    ++ +M   G+  +  ++N ++   
Sbjct: 474 AFNTMNEVGSRPVVETFNSLIHTFAKGGL-YKESEAIWFRMGEVGVPRNRDSFNGMIEGY 532

Query: 378 SSRGLLNEAEMVFRTMNEAGIVPNKATYTLLVDTF 482
              G   EA   +  M +A   P++ T   ++  +
Sbjct: 533 RQGGQFEEAIKAYVEMEKARCDPDERTLEAVLSVY 567


>gb|EOY20557.1| Plastid transcriptionally active 2 isoform 3 [Theobroma cacao]
          Length = 811

 Score =  253 bits (647), Expect = 1e-65
 Identities = 117/169 (69%), Positives = 145/169 (85%)
 Frame = +3

Query: 3   RQQWCKPNENIYTLIIGVLGREGLLDKCSEIFEEMPSYGVHWTVFTFTALINAYGRNGQY 182
           RQ WCKPNE+IYT++I +LGREGLL+KC E+F+EMPS GV  +VF +TALINAYGRNG Y
Sbjct: 128 RQIWCKPNEHIYTIMISLLGREGLLEKCREVFDEMPSQGVTRSVFAYTALINAYGRNGAY 187

Query: 183 ETSLHLLARMKREGIAPALVTYNTVITACVRGGLDWEGLLGLFAQMRHDGIQPDIITYNT 362
             SL LL +MK++ + P+++TYNTVI AC RGGLDWEGLLGLFA+MRH+GIQPDI+TYNT
Sbjct: 188 NISLELLDKMKKDKVLPSILTYNTVINACARGGLDWEGLLGLFAEMRHEGIQPDIVTYNT 247

Query: 363 LLSACSSRGLLNEAEMVFRTMNEAGIVPNKATYTLLVDTFKNIGELEMV 509
           LLSAC++RGL NEAEMVFRTMNE GI+P+  TY+ LV++F  +G+LE V
Sbjct: 248 LLSACANRGLGNEAEMVFRTMNEGGILPDLTTYSYLVESFGKLGKLEKV 296



 Score = 87.8 bits (216), Expect = 1e-15
 Identities = 46/154 (29%), Positives = 80/154 (51%)
 Frame = +3

Query: 21  PNENIYTLIIGVLGREGLLDKCSEIFEEMPSYGVHWTVFTFTALINAYGRNGQYETSLHL 200
           P+   Y +++    + G + +   +F++M   G      T++ L+N YGRNG+Y+    L
Sbjct: 310 PDIMSYNVLLEAYAKSGSIKEAMGVFKQMQVAGCAPNATTYSILLNLYGRNGRYDDVREL 369

Query: 201 LARMKREGIAPALVTYNTVITACVRGGLDWEGLLGLFAQMRHDGIQPDIITYNTLLSACS 380
              MK     P   TYN +I     GG  ++ ++ LF  M  + I+P++ TY+ L+ AC 
Sbjct: 370 FLEMKESNTEPDAATYNILIQVFGEGGY-FKEVVTLFHDMVEENIEPNVKTYDGLIFACG 428

Query: 381 SRGLLNEAEMVFRTMNEAGIVPNKATYTLLVDTF 482
             GL  +A+ +   MNE  IVP+   YT +++ +
Sbjct: 429 KGGLHEDAKKILLHMNEKCIVPSSRAYTGVIEAY 462



 Score = 87.0 bits (214), Expect = 2e-15
 Identities = 54/197 (27%), Positives = 82/197 (41%), Gaps = 34/197 (17%)
 Frame = +3

Query: 15  CKPNENIYTLIIGVLGREGLLDKCSEIFEEMPSYGVHWTVFTFTALINAYGRNGQYETSL 194
           C PN   Y++++ + GR G  D   E+F EM          T+  LI  +G  G ++  +
Sbjct: 343 CAPNATTYSILLNLYGRNGRYDDVRELFLEMKESNTEPDAATYNILIQVFGEGGYFKEVV 402

Query: 195 HLLARMKREGIAPALVTYNTVITACVRGGLD----------------------------- 287
            L   M  E I P + TY+ +I AC +GGL                              
Sbjct: 403 TLFHDMVEENIEPNVKTYDGLIFACGKGGLHEDAKKILLHMNEKCIVPSSRAYTGVIEAY 462

Query: 288 -----WEGLLGLFAQMRHDGIQPDIITYNTLLSACSSRGLLNEAEMVFRTMNEAGIVPNK 452
                +E +L  F  M      P I TYN+LL   +  GL  EA  +   MNE G+  N+
Sbjct: 463 GQAALYEEVLVAFNTMNEVESNPTIETYNSLLQTFARGGLYKEANAILSRMNETGVAKNR 522

Query: 453 ATYTLLVDTFKNIGELE 503
            ++  L++ F+  G+ E
Sbjct: 523 DSFNALIEAFRQGGQFE 539


>gb|EOY20556.1| Plastid transcriptionally active 2 isoform 2 [Theobroma cacao]
          Length = 770

 Score =  253 bits (647), Expect = 1e-65
 Identities = 117/169 (69%), Positives = 145/169 (85%)
 Frame = +3

Query: 3   RQQWCKPNENIYTLIIGVLGREGLLDKCSEIFEEMPSYGVHWTVFTFTALINAYGRNGQY 182
           RQ WCKPNE+IYT++I +LGREGLL+KC E+F+EMPS GV  +VF +TALINAYGRNG Y
Sbjct: 128 RQIWCKPNEHIYTIMISLLGREGLLEKCREVFDEMPSQGVTRSVFAYTALINAYGRNGAY 187

Query: 183 ETSLHLLARMKREGIAPALVTYNTVITACVRGGLDWEGLLGLFAQMRHDGIQPDIITYNT 362
             SL LL +MK++ + P+++TYNTVI AC RGGLDWEGLLGLFA+MRH+GIQPDI+TYNT
Sbjct: 188 NISLELLDKMKKDKVLPSILTYNTVINACARGGLDWEGLLGLFAEMRHEGIQPDIVTYNT 247

Query: 363 LLSACSSRGLLNEAEMVFRTMNEAGIVPNKATYTLLVDTFKNIGELEMV 509
           LLSAC++RGL NEAEMVFRTMNE GI+P+  TY+ LV++F  +G+LE V
Sbjct: 248 LLSACANRGLGNEAEMVFRTMNEGGILPDLTTYSYLVESFGKLGKLEKV 296



 Score = 87.8 bits (216), Expect = 1e-15
 Identities = 46/154 (29%), Positives = 80/154 (51%)
 Frame = +3

Query: 21  PNENIYTLIIGVLGREGLLDKCSEIFEEMPSYGVHWTVFTFTALINAYGRNGQYETSLHL 200
           P+   Y +++    + G + +   +F++M   G      T++ L+N YGRNG+Y+    L
Sbjct: 310 PDIMSYNVLLEAYAKSGSIKEAMGVFKQMQVAGCAPNATTYSILLNLYGRNGRYDDVREL 369

Query: 201 LARMKREGIAPALVTYNTVITACVRGGLDWEGLLGLFAQMRHDGIQPDIITYNTLLSACS 380
              MK     P   TYN +I     GG  ++ ++ LF  M  + I+P++ TY+ L+ AC 
Sbjct: 370 FLEMKESNTEPDAATYNILIQVFGEGGY-FKEVVTLFHDMVEENIEPNVKTYDGLIFACG 428

Query: 381 SRGLLNEAEMVFRTMNEAGIVPNKATYTLLVDTF 482
             GL  +A+ +   MNE  IVP+   YT +++ +
Sbjct: 429 KGGLHEDAKKILLHMNEKCIVPSSRAYTGVIEAY 462



 Score = 87.0 bits (214), Expect = 2e-15
 Identities = 54/197 (27%), Positives = 82/197 (41%), Gaps = 34/197 (17%)
 Frame = +3

Query: 15  CKPNENIYTLIIGVLGREGLLDKCSEIFEEMPSYGVHWTVFTFTALINAYGRNGQYETSL 194
           C PN   Y++++ + GR G  D   E+F EM          T+  LI  +G  G ++  +
Sbjct: 343 CAPNATTYSILLNLYGRNGRYDDVRELFLEMKESNTEPDAATYNILIQVFGEGGYFKEVV 402

Query: 195 HLLARMKREGIAPALVTYNTVITACVRGGLD----------------------------- 287
            L   M  E I P + TY+ +I AC +GGL                              
Sbjct: 403 TLFHDMVEENIEPNVKTYDGLIFACGKGGLHEDAKKILLHMNEKCIVPSSRAYTGVIEAY 462

Query: 288 -----WEGLLGLFAQMRHDGIQPDIITYNTLLSACSSRGLLNEAEMVFRTMNEAGIVPNK 452
                +E +L  F  M      P I TYN+LL   +  GL  EA  +   MNE G+  N+
Sbjct: 463 GQAALYEEVLVAFNTMNEVESNPTIETYNSLLQTFARGGLYKEANAILSRMNETGVAKNR 522

Query: 453 ATYTLLVDTFKNIGELE 503
            ++  L++ F+  G+ E
Sbjct: 523 DSFNALIEAFRQGGQFE 539


>gb|EOY20555.1| Plastid transcriptionally active 2 isoform 1 [Theobroma cacao]
          Length = 859

 Score =  253 bits (647), Expect = 1e-65
 Identities = 117/169 (69%), Positives = 145/169 (85%)
 Frame = +3

Query: 3   RQQWCKPNENIYTLIIGVLGREGLLDKCSEIFEEMPSYGVHWTVFTFTALINAYGRNGQY 182
           RQ WCKPNE+IYT++I +LGREGLL+KC E+F+EMPS GV  +VF +TALINAYGRNG Y
Sbjct: 128 RQIWCKPNEHIYTIMISLLGREGLLEKCREVFDEMPSQGVTRSVFAYTALINAYGRNGAY 187

Query: 183 ETSLHLLARMKREGIAPALVTYNTVITACVRGGLDWEGLLGLFAQMRHDGIQPDIITYNT 362
             SL LL +MK++ + P+++TYNTVI AC RGGLDWEGLLGLFA+MRH+GIQPDI+TYNT
Sbjct: 188 NISLELLDKMKKDKVLPSILTYNTVINACARGGLDWEGLLGLFAEMRHEGIQPDIVTYNT 247

Query: 363 LLSACSSRGLLNEAEMVFRTMNEAGIVPNKATYTLLVDTFKNIGELEMV 509
           LLSAC++RGL NEAEMVFRTMNE GI+P+  TY+ LV++F  +G+LE V
Sbjct: 248 LLSACANRGLGNEAEMVFRTMNEGGILPDLTTYSYLVESFGKLGKLEKV 296



 Score = 87.8 bits (216), Expect = 1e-15
 Identities = 46/154 (29%), Positives = 80/154 (51%)
 Frame = +3

Query: 21  PNENIYTLIIGVLGREGLLDKCSEIFEEMPSYGVHWTVFTFTALINAYGRNGQYETSLHL 200
           P+   Y +++    + G + +   +F++M   G      T++ L+N YGRNG+Y+    L
Sbjct: 310 PDIMSYNVLLEAYAKSGSIKEAMGVFKQMQVAGCAPNATTYSILLNLYGRNGRYDDVREL 369

Query: 201 LARMKREGIAPALVTYNTVITACVRGGLDWEGLLGLFAQMRHDGIQPDIITYNTLLSACS 380
              MK     P   TYN +I     GG  ++ ++ LF  M  + I+P++ TY+ L+ AC 
Sbjct: 370 FLEMKESNTEPDAATYNILIQVFGEGGY-FKEVVTLFHDMVEENIEPNVKTYDGLIFACG 428

Query: 381 SRGLLNEAEMVFRTMNEAGIVPNKATYTLLVDTF 482
             GL  +A+ +   MNE  IVP+   YT +++ +
Sbjct: 429 KGGLHEDAKKILLHMNEKCIVPSSRAYTGVIEAY 462



 Score = 87.0 bits (214), Expect = 2e-15
 Identities = 54/197 (27%), Positives = 82/197 (41%), Gaps = 34/197 (17%)
 Frame = +3

Query: 15  CKPNENIYTLIIGVLGREGLLDKCSEIFEEMPSYGVHWTVFTFTALINAYGRNGQYETSL 194
           C PN   Y++++ + GR G  D   E+F EM          T+  LI  +G  G ++  +
Sbjct: 343 CAPNATTYSILLNLYGRNGRYDDVRELFLEMKESNTEPDAATYNILIQVFGEGGYFKEVV 402

Query: 195 HLLARMKREGIAPALVTYNTVITACVRGGLD----------------------------- 287
            L   M  E I P + TY+ +I AC +GGL                              
Sbjct: 403 TLFHDMVEENIEPNVKTYDGLIFACGKGGLHEDAKKILLHMNEKCIVPSSRAYTGVIEAY 462

Query: 288 -----WEGLLGLFAQMRHDGIQPDIITYNTLLSACSSRGLLNEAEMVFRTMNEAGIVPNK 452
                +E +L  F  M      P I TYN+LL   +  GL  EA  +   MNE G+  N+
Sbjct: 463 GQAALYEEVLVAFNTMNEVESNPTIETYNSLLQTFARGGLYKEANAILSRMNETGVAKNR 522

Query: 453 ATYTLLVDTFKNIGELE 503
            ++  L++ F+  G+ E
Sbjct: 523 DSFNALIEAFRQGGQFE 539