BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ephedra25_contig00011352
         (959 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABR16646.1| unknown [Picea sitchensis]                             146   6e-65
gb|ABR17840.1| unknown [Picea sitchensis]                             146   6e-65
ref|XP_006878613.1| hypothetical protein AMTR_s00011p00258380 [A...   117   2e-49
ref|XP_002273602.1| PREDICTED: RNA polymerase sigma factor rpoD-...   117   6e-49
emb|CBI40014.3| unnamed protein product [Vitis vinifera]              117   6e-49
dbj|BAM45409.1| sigma factor 2 [Marchantia polymorpha] gi|459351...   120   1e-48
ref|XP_004229543.1| PREDICTED: RNA polymerase sigma factor sigB-...   118   1e-48
ref|XP_002523972.1| RNA polymerase sigma factor rpoD1, putative ...   115   1e-48
ref|XP_004303327.1| PREDICTED: RNA polymerase sigma factor sigB-...   114   2e-48
gb|EXB70625.1| RNA polymerase sigma factor rpoD [Morus notabilis]     114   4e-48
ref|XP_001758940.1| plastid sigma facor SIG2 [Physcomitrella pat...   120   5e-48
ref|XP_006359117.1| PREDICTED: RNA polymerase sigma factor sigB-...   115   7e-48
ref|XP_002325455.2| hypothetical protein POPTR_0019s06100g [Popu...   119   7e-48
ref|XP_002889701.1| hypothetical protein ARALYDRAFT_470915 [Arab...   114   1e-47
ref|XP_006307126.1| hypothetical protein CARUB_v10008711mg [Caps...   111   2e-47
gb|EOY10370.1| RNApolymerase sigma subunit 2 [Theobroma cacao]        108   2e-47
ref|XP_006577887.1| PREDICTED: RNA polymerase sigma factor sigB-...   112   2e-47
gb|EMJ05079.1| hypothetical protein PRUPE_ppa006657mg [Prunus pe...   109   2e-47
ref|XP_006417677.1| hypothetical protein EUTSA_v10007187mg [Eutr...   112   3e-47
gb|AAB69385.1| sigma factor 2 [Arabidopsis thaliana]                  113   3e-47

>gb|ABR16646.1| unknown [Picea sitchensis]
          Length = 592

 Score =  146 bits (369), Expect(2) = 6e-65
 Identities = 79/185 (42%), Positives = 116/185 (62%), Gaps = 1/185 (0%)
 Frame = -1

Query: 554 STYAHWWIRQAINKTLTSQSKLVGVPANAVEAASQLRDTKTLFVEKHHRSPTLQELSDIT 375
           STYA+WWIRQ+I K LT QS+ + +P + VE+ +++R    L  ++H R PT +E++++ 
Sbjct: 407 STYAYWWIRQSITKALTEQSRTIRLPVHIVESMTRIRTAWRLLYQEHKRDPTKEEVAEVA 466

Query: 374 GFSKTRIKDVMSYRKTFVSLDSPAPGKD-EAYLASVVDDPDQLSVDTITSEELGQRDIDN 198
           G S TR++ V    +   SLD    GKD +   + +V D +  S +TI S+EL ++D+D 
Sbjct: 467 GISMTRLRHVTRCSRVPTSLDR-CVGKDMDEKFSEIVADTNSESTETIVSKELFKKDLDR 525

Query: 197 VLRTLTPKEXXXXXXXXXXXXXXXRTLQEVGEHFSLSRERVRQMERTAMRKLRENQDIRD 18
           VL TLT +E               ++L EVGE+FSLSRERVRQ+E  AMRKLR+N   + 
Sbjct: 526 VLDTLTAREKQVVRLRYGLDDGRMKSLHEVGENFSLSRERVRQIEMKAMRKLRQNHRTQH 585

Query: 17  LEHYL 3
           L+HYL
Sbjct: 586 LKHYL 590



 Score =  129 bits (323), Expect(2) = 6e-65
 Identities = 58/101 (57%), Positives = 82/101 (81%)
 Frame = -2

Query: 880 KNQSNRRLLTANEEISFSRKVQDLHKLEKIKQQYKDKMGKEPTINQWAEAVGIDQKSLRK 701
           ++ S+ RLLTA+EE+  SR +QDL KL++I+ +YK+K GKEPT+ QWAE +G+DQK+L+ 
Sbjct: 287 RDWSSSRLLTASEEVELSRGIQDLIKLDRIRAKYKEKTGKEPTLAQWAEVIGVDQKTLKM 346

Query: 700 RLEEGYESRSKMVSCNLRLVVSIATKYQNMGIGLQDLVQAG 578
           RLE G +S  K+++CNLRLV+S+A  YQN G+ LQDL+QAG
Sbjct: 347 RLEVGRDSFDKIINCNLRLVISVAKNYQNRGLSLQDLIQAG 387


>gb|ABR17840.1| unknown [Picea sitchensis]
          Length = 495

 Score =  146 bits (369), Expect(2) = 6e-65
 Identities = 79/185 (42%), Positives = 116/185 (62%), Gaps = 1/185 (0%)
 Frame = -1

Query: 554 STYAHWWIRQAINKTLTSQSKLVGVPANAVEAASQLRDTKTLFVEKHHRSPTLQELSDIT 375
           STYA+WWIRQ+I K LT QS+ + +P + VE+ +++R    L  ++H R PT +E++++ 
Sbjct: 310 STYAYWWIRQSITKALTEQSRTIRLPVHIVESMTRIRTAWRLLYQEHKRDPTKEEVAEVA 369

Query: 374 GFSKTRIKDVMSYRKTFVSLDSPAPGKD-EAYLASVVDDPDQLSVDTITSEELGQRDIDN 198
           G S TR++ V    +   SLD    GKD +   + +V D +  S +TI S+EL ++D+D 
Sbjct: 370 GISMTRLRHVTRCSRVPTSLDR-CVGKDMDEKFSEIVADTNSESTETIVSKELFKKDLDR 428

Query: 197 VLRTLTPKEXXXXXXXXXXXXXXXRTLQEVGEHFSLSRERVRQMERTAMRKLRENQDIRD 18
           VL TLT +E               ++L EVGE+FSLSRERVRQ+E  AMRKLR+N   + 
Sbjct: 429 VLDTLTAREKQVVRLRYGLDDGRMKSLHEVGENFSLSRERVRQIEMKAMRKLRQNHRTQH 488

Query: 17  LEHYL 3
           L+HYL
Sbjct: 489 LKHYL 493



 Score =  129 bits (323), Expect(2) = 6e-65
 Identities = 58/101 (57%), Positives = 82/101 (81%)
 Frame = -2

Query: 880 KNQSNRRLLTANEEISFSRKVQDLHKLEKIKQQYKDKMGKEPTINQWAEAVGIDQKSLRK 701
           ++ S+ RLLTA+EE+  SR +QDL KL++I+ +YK+K GKEPT+ QWAE +G+DQK+L+ 
Sbjct: 190 RDWSSSRLLTASEEVELSRGIQDLIKLDRIRAKYKEKTGKEPTLAQWAEVIGVDQKTLKM 249

Query: 700 RLEEGYESRSKMVSCNLRLVVSIATKYQNMGIGLQDLVQAG 578
           RLE G +S  K+++CNLRLV+S+A  YQN G+ LQDL+QAG
Sbjct: 250 RLEVGRDSFDKIINCNLRLVISVAKNYQNRGLSLQDLIQAG 290


>ref|XP_006878613.1| hypothetical protein AMTR_s00011p00258380 [Amborella trichopoda]
           gi|548831956|gb|ERM94758.1| hypothetical protein
           AMTR_s00011p00258380 [Amborella trichopoda]
          Length = 570

 Score =  117 bits (294), Expect(2) = 2e-49
 Identities = 60/184 (32%), Positives = 103/184 (55%)
 Frame = -1

Query: 554 STYAHWWIRQAINKTLTSQSKLVGVPANAVEAASQLRDTKTLFVEKHHRSPTLQELSDIT 375
           STYAHWWI+QA+ K+L+ QS+ + +P + V+A  ++R+       ++ R P  +E+++ T
Sbjct: 384 STYAHWWIKQAVRKSLSDQSRTIRLPFHMVDATYRVREATKQLYSENGRHPNDEEVAEAT 443

Query: 374 GFSKTRIKDVMSYRKTFVSLDSPAPGKDEAYLASVVDDPDQLSVDTITSEELGQRDIDNV 195
           G S  R+  V+   K   SLD           + V+ DP+  + + +  ++  ++D++ V
Sbjct: 444 GLSMKRLTTVLLTPKAPRSLDQKIGINQNLKPSEVISDPEAETAEDLLMKQFMKQDLEKV 503

Query: 194 LRTLTPKEXXXXXXXXXXXXXXXRTLQEVGEHFSLSRERVRQMERTAMRKLRENQDIRDL 15
           L TL P+E               +TLQE+GE   +SRER+RQ+E +A RKL+  +  ++L
Sbjct: 504 LNTLNPREKQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKNL 563

Query: 14  EHYL 3
             YL
Sbjct: 564 RQYL 567



 Score =  106 bits (264), Expect(2) = 2e-49
 Identities = 50/98 (51%), Positives = 69/98 (70%)
 Frame = -2

Query: 871 SNRRLLTANEEISFSRKVQDLHKLEKIKQQYKDKMGKEPTINQWAEAVGIDQKSLRKRLE 692
           ++ +LLTA EE+  S  +QDL KLEK+ ++  ++ G EPT  QWA A GIDQK+LR+RL 
Sbjct: 267 NSTKLLTATEELELSEGIQDLLKLEKLHKELTERFGGEPTFVQWAAAAGIDQKALRRRLS 326

Query: 691 EGYESRSKMVSCNLRLVVSIATKYQNMGIGLQDLVQAG 578
            G   + KM+  N+RLV+SIA  YQ +G+ +QDLVQ G
Sbjct: 327 YGTHCKDKMIKSNIRLVISIAKNYQGVGLSIQDLVQEG 364


>ref|XP_002273602.1| PREDICTED: RNA polymerase sigma factor rpoD-like [Vitis vinifera]
          Length = 578

 Score =  117 bits (292), Expect(2) = 6e-49
 Identities = 60/184 (32%), Positives = 102/184 (55%)
 Frame = -1

Query: 554 STYAHWWIRQAINKTLTSQSKLVGVPANAVEAASQLRDTKTLFVEKHHRSPTLQELSDIT 375
           STYAHWWI+QA+ K+L+ QS+ + +P + VEA  ++++ +     ++ R P  +E+++ T
Sbjct: 393 STYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEAT 452

Query: 374 GFSKTRIKDVMSYRKTFVSLDSPAPGKDEAYLASVVDDPDQLSVDTITSEELGQRDIDNV 195
           G S  R+  V+   K   SLD           + V+ DPD  + + +  ++  + D++ V
Sbjct: 453 GLSMKRLNAVLLTPKAPRSLDQKIGINQNLKPSEVIADPDAETAEELLIKQFMREDLEKV 512

Query: 194 LRTLTPKEXXXXXXXXXXXXXXXRTLQEVGEHFSLSRERVRQMERTAMRKLRENQDIRDL 15
           L +L P+E               +TLQE+GE   +SRER+RQ+E  A RKL+  +  + L
Sbjct: 513 LNSLNPREKQVIRWRYGLEDGRTKTLQEIGELMGVSRERIRQIESCAFRKLKNKRRTKHL 572

Query: 14  EHYL 3
           + YL
Sbjct: 573 QQYL 576



 Score =  105 bits (261), Expect(2) = 6e-49
 Identities = 49/98 (50%), Positives = 67/98 (68%)
 Frame = -2

Query: 871 SNRRLLTANEEISFSRKVQDLHKLEKIKQQYKDKMGKEPTINQWAEAVGIDQKSLRKRLE 692
           S  RLLTA EE+  S  +QDL KLEK+++  +++ G +PT  QWA A G+DQK+LR+R  
Sbjct: 276 STSRLLTATEELELSEGIQDLLKLEKLQEDLEERFGVKPTFAQWAAAAGVDQKTLRRRTN 335

Query: 691 EGYESRSKMVSCNLRLVVSIATKYQNMGIGLQDLVQAG 578
            G   + KM+  N+RLV+SIA  YQ  G+ +QDLVQ G
Sbjct: 336 YGIRCKDKMIKSNIRLVISIAKNYQGAGMNIQDLVQEG 373


>emb|CBI40014.3| unnamed protein product [Vitis vinifera]
          Length = 575

 Score =  117 bits (292), Expect(2) = 6e-49
 Identities = 60/184 (32%), Positives = 102/184 (55%)
 Frame = -1

Query: 554 STYAHWWIRQAINKTLTSQSKLVGVPANAVEAASQLRDTKTLFVEKHHRSPTLQELSDIT 375
           STYAHWWI+QA+ K+L+ QS+ + +P + VEA  ++++ +     ++ R P  +E+++ T
Sbjct: 390 STYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEAT 449

Query: 374 GFSKTRIKDVMSYRKTFVSLDSPAPGKDEAYLASVVDDPDQLSVDTITSEELGQRDIDNV 195
           G S  R+  V+   K   SLD           + V+ DPD  + + +  ++  + D++ V
Sbjct: 450 GLSMKRLNAVLLTPKAPRSLDQKIGINQNLKPSEVIADPDAETAEELLIKQFMREDLEKV 509

Query: 194 LRTLTPKEXXXXXXXXXXXXXXXRTLQEVGEHFSLSRERVRQMERTAMRKLRENQDIRDL 15
           L +L P+E               +TLQE+GE   +SRER+RQ+E  A RKL+  +  + L
Sbjct: 510 LNSLNPREKQVIRWRYGLEDGRTKTLQEIGELMGVSRERIRQIESCAFRKLKNKRRTKHL 569

Query: 14  EHYL 3
           + YL
Sbjct: 570 QQYL 573



 Score =  105 bits (261), Expect(2) = 6e-49
 Identities = 49/98 (50%), Positives = 67/98 (68%)
 Frame = -2

Query: 871 SNRRLLTANEEISFSRKVQDLHKLEKIKQQYKDKMGKEPTINQWAEAVGIDQKSLRKRLE 692
           S  RLLTA EE+  S  +QDL KLEK+++  +++ G +PT  QWA A G+DQK+LR+R  
Sbjct: 273 STSRLLTATEELELSEGIQDLLKLEKLQEDLEERFGVKPTFAQWAAAAGVDQKTLRRRTN 332

Query: 691 EGYESRSKMVSCNLRLVVSIATKYQNMGIGLQDLVQAG 578
            G   + KM+  N+RLV+SIA  YQ  G+ +QDLVQ G
Sbjct: 333 YGIRCKDKMIKSNIRLVISIAKNYQGAGMNIQDLVQEG 370


>dbj|BAM45409.1| sigma factor 2 [Marchantia polymorpha] gi|459351506|dbj|BAM95331.1|
           plastid RNA polymerase sigma factor 2 [Marchantia
           polymorpha]
          Length = 615

 Score =  120 bits (302), Expect(2) = 1e-48
 Identities = 63/184 (34%), Positives = 105/184 (57%)
 Frame = -1

Query: 554 STYAHWWIRQAINKTLTSQSKLVGVPANAVEAASQLRDTKTLFVEKHHRSPTLQELSDIT 375
           STYAHWWIRQAI + +  QS+ + +P +  E  S++   K++   +H R+P  +E++++ 
Sbjct: 430 STYAHWWIRQAITRAIADQSRTIRLPVHVYELLSRITKAKSMLAAEHGRAPRDEEVAELV 489

Query: 374 GFSKTRIKDVMSYRKTFVSLDSPAPGKDEAYLASVVDDPDQLSVDTITSEELGQRDIDNV 195
           G S  ++K V+   ++  S++ P    ++  L  V+ D D  S +   S+ L ++D+D V
Sbjct: 490 GLSIEKLKMVIKSARSPKSMEFPVGKNNDTTLGEVIPDKDIDSPEEAISKRLLKQDLDVV 549

Query: 194 LRTLTPKEXXXXXXXXXXXXXXXRTLQEVGEHFSLSRERVRQMERTAMRKLRENQDIRDL 15
           L TL+P+E               RTL+E+G  F ++RER+RQ+E  A+RKLR+      L
Sbjct: 550 LHTLSPRERDVLRLRYGLDDGRMRTLEEIGNVFKVTRERIRQIEAKALRKLRQPSRNTAL 609

Query: 14  EHYL 3
             YL
Sbjct: 610 REYL 613



 Score =  100 bits (249), Expect(2) = 1e-48
 Identities = 46/110 (41%), Positives = 75/110 (68%)
 Frame = -2

Query: 907 PEKKRRNSTKNQSNRRLLTANEEISFSRKVQDLHKLEKIKQQYKDKMGKEPTINQWAEAV 728
           P+   R   ++    +LLT++EEI  +  +QDL ++E +K   +++MG+EPT+ +WA+AV
Sbjct: 301 PQDPVRAYLRDIGKTKLLTSSEEIELAEGIQDLLRVESVKNDLREQMGREPTLMEWAKAV 360

Query: 727 GIDQKSLRKRLEEGYESRSKMVSCNLRLVVSIATKYQNMGIGLQDLVQAG 578
           G ++ SL  R++ G   + +MV+ NLRLVVSIA +YQ  G+ +QDL+Q G
Sbjct: 361 GTERHSLESRIKSGQACKDRMVNSNLRLVVSIAKRYQGRGMTIQDLIQEG 410


>ref|XP_004229543.1| PREDICTED: RNA polymerase sigma factor sigB-like [Solanum
           lycopersicum]
          Length = 613

 Score =  118 bits (295), Expect(2) = 1e-48
 Identities = 62/184 (33%), Positives = 105/184 (57%)
 Frame = -1

Query: 554 STYAHWWIRQAINKTLTSQSKLVGVPANAVEAASQLRDTKTLFVEKHHRSPTLQELSDIT 375
           STYAHWWI+QA+ K+L+ QS+ + +P + VEA  ++++ +   + ++ R P   E+++ T
Sbjct: 428 STYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLLTENGRHPNDAEVAEAT 487

Query: 374 GFSKTRIKDVMSYRKTFVSLDSPAPGKDEAYLASVVDDPDQLSVDTITSEELGQRDIDNV 195
           G S  R+  VM   K   SLD      +    + V+ DPD  + + I +++  ++D++ V
Sbjct: 488 GLSMKRLAAVMLTPKAPRSLDQKVGFNESLKPSEVLADPDAETSEEILTKQFMRQDLEKV 547

Query: 194 LRTLTPKEXXXXXXXXXXXXXXXRTLQEVGEHFSLSRERVRQMERTAMRKLRENQDIRDL 15
           L TL P+E               +TLQE+GE   +SRER+RQ+E  A RKL+  +  + L
Sbjct: 548 LDTLNPREKQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESCAFRKLKNKKRTKFL 607

Query: 14  EHYL 3
           + Y+
Sbjct: 608 QQYI 611



 Score =  103 bits (256), Expect(2) = 1e-48
 Identities = 50/95 (52%), Positives = 67/95 (70%)
 Frame = -2

Query: 862 RLLTANEEISFSRKVQDLHKLEKIKQQYKDKMGKEPTINQWAEAVGIDQKSLRKRLEEGY 683
           RLLTA+EE   SR +QDL KLE+++ +  ++ G +PT  QWA A G+DQ +LRKRL  G 
Sbjct: 314 RLLTASEEQELSRGIQDLLKLERLQVELTERCGGQPTFTQWAAAAGVDQMTLRKRLNYGI 373

Query: 682 ESRSKMVSCNLRLVVSIATKYQNMGIGLQDLVQAG 578
             + KM+  N+RLV+SIA  YQ +G+ LQDLVQ G
Sbjct: 374 LCKDKMIKSNVRLVISIAKNYQGVGMNLQDLVQEG 408


>ref|XP_002523972.1| RNA polymerase sigma factor rpoD1, putative [Ricinus communis]
           gi|223536699|gb|EEF38340.1| RNA polymerase sigma factor
           rpoD1, putative [Ricinus communis]
          Length = 569

 Score =  115 bits (289), Expect(2) = 1e-48
 Identities = 59/184 (32%), Positives = 104/184 (56%)
 Frame = -1

Query: 554 STYAHWWIRQAINKTLTSQSKLVGVPANAVEAASQLRDTKTLFVEKHHRSPTLQELSDIT 375
           STYAHWWI+QA+ K+L+ QS+ + +P + VEA  ++++ +     ++ R P  +E+++  
Sbjct: 384 STYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPDDEEVAEAA 443

Query: 374 GFSKTRIKDVMSYRKTFVSLDSPAPGKDEAYLASVVDDPDQLSVDTITSEELGQRDIDNV 195
           G S  R+  V+   K   SLD       +   + V+ DP+  + + +  ++  ++D++ V
Sbjct: 444 GLSMKRLSAVLLTPKAPRSLDQKIGMNMDLKPSEVIADPEAETAEELLMKQFMKQDLEKV 503

Query: 194 LRTLTPKEXXXXXXXXXXXXXXXRTLQEVGEHFSLSRERVRQMERTAMRKLRENQDIRDL 15
           L TL P+E               +TLQE+GE   +SRER+RQ+E +A RKL+  +  + L
Sbjct: 504 LNTLNPRETQVVRWRFGLEDGRMKTLQEIGEIMGVSRERIRQIESSAFRKLKNKKRTKQL 563

Query: 14  EHYL 3
           + YL
Sbjct: 564 KQYL 567



 Score =  105 bits (262), Expect(2) = 1e-48
 Identities = 49/98 (50%), Positives = 69/98 (70%)
 Frame = -2

Query: 871 SNRRLLTANEEISFSRKVQDLHKLEKIKQQYKDKMGKEPTINQWAEAVGIDQKSLRKRLE 692
           S  RLLTA+EE+  S  +QDL KLE+++++  ++ G +PT  QWA A G+DQ++LRKR+ 
Sbjct: 267 STSRLLTASEELELSAAIQDLLKLERLQEELAERYGGQPTFAQWAAAAGVDQRTLRKRIN 326

Query: 691 EGYESRSKMVSCNLRLVVSIATKYQNMGIGLQDLVQAG 578
            G   + KM+  N+RLV+SIA  YQ  G+ LQDLVQ G
Sbjct: 327 HGTICKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEG 364


>ref|XP_004303327.1| PREDICTED: RNA polymerase sigma factor sigB-like [Fragaria vesca
           subsp. vesca]
          Length = 616

 Score =  114 bits (285), Expect(2) = 2e-48
 Identities = 60/184 (32%), Positives = 102/184 (55%)
 Frame = -1

Query: 554 STYAHWWIRQAINKTLTSQSKLVGVPANAVEAASQLRDTKTLFVEKHHRSPTLQELSDIT 375
           STYAHWWI+QA+ K+L+ QS+ + +P + VEA  ++R+ K      + R P  +E+++ T
Sbjct: 431 STYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVREAKKQLYSVNGRHPNDEEVAEAT 490

Query: 374 GFSKTRIKDVMSYRKTFVSLDSPAPGKDEAYLASVVDDPDQLSVDTITSEELGQRDIDNV 195
           G S  R+  V+   K   SL+           + V+ DPD  + + +  ++  ++D++ V
Sbjct: 491 GLSMKRLAAVLLTPKAPRSLEQKIGINQNLKPSDVIADPDAETAEDLLMKKFMKQDLEKV 550

Query: 194 LRTLTPKEXXXXXXXXXXXXXXXRTLQEVGEHFSLSRERVRQMERTAMRKLRENQDIRDL 15
           L +L P+E               +TLQE+GE   +SRER+RQ+E  A RKL+  +  + L
Sbjct: 551 LDSLNPREKQVIRWRFGMEDGRMKTLQEIGELMGVSRERIRQIESCAFRKLKNKKRTKHL 610

Query: 14  EHYL 3
           + Y+
Sbjct: 611 QQYV 614



 Score =  106 bits (264), Expect(2) = 2e-48
 Identities = 51/95 (53%), Positives = 66/95 (69%)
 Frame = -2

Query: 862 RLLTANEEISFSRKVQDLHKLEKIKQQYKDKMGKEPTINQWAEAVGIDQKSLRKRLEEGY 683
           RLLTANEEI  S  +Q+L KLEK+++    + G +PT  QWA A G+DQK+LRKR+  G 
Sbjct: 317 RLLTANEEIELSEGIQELLKLEKLQEDLAQRCGTQPTFAQWAAAAGVDQKTLRKRVNYGI 376

Query: 682 ESRSKMVSCNLRLVVSIATKYQNMGIGLQDLVQAG 578
             + KM+  N+RLV+SIA  YQ  G+ LQDLVQ G
Sbjct: 377 MCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEG 411


>gb|EXB70625.1| RNA polymerase sigma factor rpoD [Morus notabilis]
          Length = 574

 Score =  114 bits (285), Expect(2) = 4e-48
 Identities = 58/184 (31%), Positives = 103/184 (55%)
 Frame = -1

Query: 554 STYAHWWIRQAINKTLTSQSKLVGVPANAVEAASQLRDTKTLFVEKHHRSPTLQELSDIT 375
           STYAHWWI+QA+ K+L+ QS+ + +P + VEA  ++++ +     ++ R P  +E+++ T
Sbjct: 388 STYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRQPNDEEVAEAT 447

Query: 374 GFSKTRIKDVMSYRKTFVSLDSPAPGKDEAYLASVVDDPDQLSVDTITSEELGQRDIDNV 195
           G S  R+  V+   K   SL+           + ++ DPD  +++ + + +  ++D+D V
Sbjct: 448 GLSMKRLAAVLLTPKAPRSLEQKIGINQNLKPSEIIADPDAETLEDVLTRQFMKQDLDKV 507

Query: 194 LRTLTPKEXXXXXXXXXXXXXXXRTLQEVGEHFSLSRERVRQMERTAMRKLRENQDIRDL 15
           L +L  +E               +TLQE+GE   +SRER+RQ+E  A RKL+  +  + L
Sbjct: 508 LDSLNQREKQVIRWRFGMDDGRMKTLQEIGELMGVSRERIRQIESCAFRKLKNKKRTKHL 567

Query: 14  EHYL 3
           + YL
Sbjct: 568 QQYL 571



 Score =  105 bits (261), Expect(2) = 4e-48
 Identities = 51/98 (52%), Positives = 67/98 (68%)
 Frame = -2

Query: 871 SNRRLLTANEEISFSRKVQDLHKLEKIKQQYKDKMGKEPTINQWAEAVGIDQKSLRKRLE 692
           S  RLLTA EEI  S  +QDL KLEK++++  ++ G  PT  QWA A G+DQK+LR+R+ 
Sbjct: 271 STSRLLTATEEIELSEGIQDLLKLEKLQEELAERCGGPPTFAQWAAAAGVDQKTLRRRIN 330

Query: 691 EGYESRSKMVSCNLRLVVSIATKYQNMGIGLQDLVQAG 578
            G   + KM+  N+RLV+SIA  YQ  G+ LQDLVQ G
Sbjct: 331 YGILCKDKMIKSNVRLVISIAKNYQGAGMNLQDLVQEG 368


>ref|XP_001758940.1| plastid sigma facor SIG2 [Physcomitrella patens]
           gi|12697780|dbj|BAB21618.1| PpSIG2 [Physcomitrella
           patens] gi|14669832|dbj|BAB62008.1| PpSIG2
           [Physcomitrella patens] gi|162690077|gb|EDQ76446.1|
           plastid sigma facor SIG2 [Physcomitrella patens]
          Length = 579

 Score =  120 bits (302), Expect(2) = 5e-48
 Identities = 62/184 (33%), Positives = 104/184 (56%)
 Frame = -1

Query: 554 STYAHWWIRQAINKTLTSQSKLVGVPANAVEAASQLRDTKTLFVEKHHRSPTLQELSDIT 375
           STYAHWWIRQA+ +++  QS+ + +P +  E  S++   K + V++H R    +E++++ 
Sbjct: 389 STYAHWWIRQAVTRSIADQSRTIRLPIHLYEVISRINKAKRMLVQEHGREARNEEVAELV 448

Query: 374 GFSKTRIKDVMSYRKTFVSLDSPAPGKDEAYLASVVDDPDQLSVDTITSEELGQRDIDNV 195
           G +  ++K V+   K   S++ P     +  L  +V D D  S +    ++L ++DI+ V
Sbjct: 449 GLTVEKLKSVVKSAKAPGSMERPIGKDGDTTLGELVADTDVDSPEDAIVKQLMRQDIEGV 508

Query: 194 LRTLTPKEXXXXXXXXXXXXXXXRTLQEVGEHFSLSRERVRQMERTAMRKLRENQDIRDL 15
           LRTL P+E               +TL+E+G+ F ++RER+RQ+E  AMRKLR+      L
Sbjct: 509 LRTLNPREREVLRLRFGLDDGRSKTLEEIGQIFKVTRERIRQIEAKAMRKLRQPSRNSIL 568

Query: 14  EHYL 3
             YL
Sbjct: 569 REYL 572



 Score = 98.2 bits (243), Expect(2) = 5e-48
 Identities = 49/110 (44%), Positives = 71/110 (64%)
 Frame = -2

Query: 907 PEKKRRNSTKNQSNRRLLTANEEISFSRKVQDLHKLEKIKQQYKDKMGKEPTINQWAEAV 728
           P    R   ++    +LLTA EE+  S ++QDL KLE IK   + ++G+  TI +W+ AV
Sbjct: 260 PSDPVRAYLRDIGRTKLLTAREEVDLSHQIQDLLKLENIKSNLEREIGRNATIGEWSRAV 319

Query: 727 GIDQKSLRKRLEEGYESRSKMVSCNLRLVVSIATKYQNMGIGLQDLVQAG 578
           G++Q +   RL++G  ++ KMV+ NLRLVVSIA  YQ  G+ LQDL+Q G
Sbjct: 320 GMEQNAFEARLKKGRFAKDKMVNSNLRLVVSIAKNYQGRGMTLQDLIQEG 369


>ref|XP_006359117.1| PREDICTED: RNA polymerase sigma factor sigB-like [Solanum
           tuberosum]
          Length = 613

 Score =  115 bits (288), Expect(2) = 7e-48
 Identities = 60/184 (32%), Positives = 105/184 (57%)
 Frame = -1

Query: 554 STYAHWWIRQAINKTLTSQSKLVGVPANAVEAASQLRDTKTLFVEKHHRSPTLQELSDIT 375
           STYAHWWI+QA+ K+L+ QS+++ +P + VEA  ++++ +   + ++ R P   E+++  
Sbjct: 428 STYAHWWIKQAVRKSLSDQSRMIRLPFHMVEATYRVKEARKQLLTENGRHPNDAEVAEAA 487

Query: 374 GFSKTRIKDVMSYRKTFVSLDSPAPGKDEAYLASVVDDPDQLSVDTITSEELGQRDIDNV 195
           G S  R+  VM   K   SLD      +    + V+ DP+  + + I +++  ++D++ V
Sbjct: 488 GLSMKRLAAVMLTPKAPRSLDQKIGFNESLKPSEVLADPEAETSEEILTKQFMRQDLEKV 547

Query: 194 LRTLTPKEXXXXXXXXXXXXXXXRTLQEVGEHFSLSRERVRQMERTAMRKLRENQDIRDL 15
           L TL P+E               +TLQE+GE   +SRER+RQ+E  A RKL+  +  + L
Sbjct: 548 LDTLNPREKQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESCAFRKLKNKKRTKFL 607

Query: 14  EHYL 3
           + Y+
Sbjct: 608 QQYI 611



 Score =  103 bits (256), Expect(2) = 7e-48
 Identities = 50/95 (52%), Positives = 67/95 (70%)
 Frame = -2

Query: 862 RLLTANEEISFSRKVQDLHKLEKIKQQYKDKMGKEPTINQWAEAVGIDQKSLRKRLEEGY 683
           RLLTA+EE   SR +QDL KLE+++ +  ++ G +PT  QWA A G+DQ +LRKRL  G 
Sbjct: 314 RLLTASEEQELSRGIQDLLKLERLQVELTERCGGQPTFTQWAAAAGVDQMTLRKRLNYGI 373

Query: 682 ESRSKMVSCNLRLVVSIATKYQNMGIGLQDLVQAG 578
             + KM+  N+RLV+SIA  YQ +G+ LQDLVQ G
Sbjct: 374 LCKDKMIKSNVRLVISIAKNYQGVGMNLQDLVQEG 408


>ref|XP_002325455.2| hypothetical protein POPTR_0019s06100g [Populus trichocarpa]
           gi|550316911|gb|EEE99836.2| hypothetical protein
           POPTR_0019s06100g [Populus trichocarpa]
          Length = 555

 Score =  119 bits (298), Expect(2) = 7e-48
 Identities = 61/184 (33%), Positives = 105/184 (57%)
 Frame = -1

Query: 554 STYAHWWIRQAINKTLTSQSKLVGVPANAVEAASQLRDTKTLFVEKHHRSPTLQELSDIT 375
           STYAHWWIRQA+ ++L+ QS+ + +P + V+A  ++++ +  F  ++ R P  +E+++ T
Sbjct: 370 STYAHWWIRQAVRRSLSDQSRTIRLPFHMVDATYRVKEARKQFYSENGRHPDDKEVAEAT 429

Query: 374 GFSKTRIKDVMSYRKTFVSLDSPAPGKDEAYLASVVDDPDQLSVDTITSEELGQRDIDNV 195
           G S  R+  V+   K   SLD       +  L+ V  DP+  + + +  +E  ++D++ V
Sbjct: 430 GLSMKRLSAVLLTPKAPRSLDQKMGFNMDLKLSEVTADPEAETAEDLLMKEFMKKDLERV 489

Query: 194 LRTLTPKEXXXXXXXXXXXXXXXRTLQEVGEHFSLSRERVRQMERTAMRKLRENQDIRDL 15
           L +L+P+E               +TLQE+GE   +SRER+RQ+E +A RKL+     + L
Sbjct: 490 LESLSPRENQVIRWRFGMEDGRMKTLQEIGELMGVSRERIRQIELSAFRKLKNKNRTKQL 549

Query: 14  EHYL 3
             YL
Sbjct: 550 RQYL 553



 Score = 99.4 bits (246), Expect(2) = 7e-48
 Identities = 48/98 (48%), Positives = 67/98 (68%)
 Frame = -2

Query: 871 SNRRLLTANEEISFSRKVQDLHKLEKIKQQYKDKMGKEPTINQWAEAVGIDQKSLRKRLE 692
           ++ RLL+A EE+  S  +QDL KLE+I+++ K++ G +PT  QWA A  +DQ +LRKRL 
Sbjct: 253 TSSRLLSATEEVELSEGIQDLLKLERIEEELKERFGGKPTFAQWAAAARVDQITLRKRLN 312

Query: 691 EGYESRSKMVSCNLRLVVSIATKYQNMGIGLQDLVQAG 578
                + KM+  N+RLV+SIA  YQ  G+ LQDLVQ G
Sbjct: 313 YAILCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEG 350


>ref|XP_002889701.1| hypothetical protein ARALYDRAFT_470915 [Arabidopsis lyrata subsp.
           lyrata] gi|297335543|gb|EFH65960.1| hypothetical protein
           ARALYDRAFT_470915 [Arabidopsis lyrata subsp. lyrata]
          Length = 572

 Score =  114 bits (285), Expect(2) = 1e-47
 Identities = 61/184 (33%), Positives = 103/184 (55%)
 Frame = -1

Query: 554 STYAHWWIRQAINKTLTSQSKLVGVPANAVEAASQLRDTKTLFVEKHHRSPTLQELSDIT 375
           STYAHWWI+QA+ K+L+ QS+++ +P + VEA  ++++ +     +  + P  +E+++ T
Sbjct: 385 STYAHWWIKQAVRKSLSDQSRMIRLPFHMVEATYRVKEARKQLYSETGKHPKNEEIAEAT 444

Query: 374 GFSKTRIKDVMSYRKTFVSLDSPAPGKDEAYLASVVDDPDQLSVDTITSEELGQRDIDNV 195
           G S  R+  V+   K   SLD           + V+ DP+ ++ + I  +E  ++D+D V
Sbjct: 445 GLSMKRLMAVLLSPKPPRSLDQKIGMNQNLKPSEVIADPEAVTSEDILIKEFMRQDLDKV 504

Query: 194 LRTLTPKEXXXXXXXXXXXXXXXRTLQEVGEHFSLSRERVRQMERTAMRKLRENQDIRDL 15
           L +L  +E               +TLQE+GE   +SRERVRQ+E +A RKL+  +    L
Sbjct: 505 LDSLGTREKQVIRWRFGMEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKLKNKKRSNHL 564

Query: 14  EHYL 3
           + YL
Sbjct: 565 QQYL 568



 Score =  103 bits (257), Expect(2) = 1e-47
 Identities = 49/98 (50%), Positives = 67/98 (68%)
 Frame = -2

Query: 871 SNRRLLTANEEISFSRKVQDLHKLEKIKQQYKDKMGKEPTINQWAEAVGIDQKSLRKRLE 692
           S+ +LLT  EE   S  +QDL KLE+++ +  ++ G++PT  QWA A G+DQKSLRKR+ 
Sbjct: 268 SSSKLLTVREEHELSAGIQDLLKLERLQTELTERCGRQPTFAQWASAAGVDQKSLRKRIH 327

Query: 691 EGYESRSKMVSCNLRLVVSIATKYQNMGIGLQDLVQAG 578
            G   + KM+  N+RLV+SIA  YQ  G+ LQDLVQ G
Sbjct: 328 HGTLCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEG 365


>ref|XP_006307126.1| hypothetical protein CARUB_v10008711mg [Capsella rubella]
           gi|482575837|gb|EOA40024.1| hypothetical protein
           CARUB_v10008711mg [Capsella rubella]
          Length = 571

 Score =  111 bits (278), Expect(2) = 2e-47
 Identities = 61/184 (33%), Positives = 101/184 (54%)
 Frame = -1

Query: 554 STYAHWWIRQAINKTLTSQSKLVGVPANAVEAASQLRDTKTLFVEKHHRSPTLQELSDIT 375
           STYAHWWI+QA+ K+L+ QS+++ +P + VEA  ++++ +     +  R P  +E+++ T
Sbjct: 384 STYAHWWIKQAVRKSLSDQSRMIRLPFHMVEATYRVKEARKQLYTEKGRHPENEEVAEAT 443

Query: 374 GFSKTRIKDVMSYRKTFVSLDSPAPGKDEAYLASVVDDPDQLSVDTITSEELGQRDIDNV 195
           G S  R+  V+   K   SLD           + V+ DP+  + + I  ++  + D+D V
Sbjct: 444 GLSMKRLMAVLLSPKPPRSLDQKIGMNQNLKPSEVIADPEAETSEDILIKQFMREDLDKV 503

Query: 194 LRTLTPKEXXXXXXXXXXXXXXXRTLQEVGEHFSLSRERVRQMERTAMRKLRENQDIRDL 15
           L +L  +E               +TLQE+GE   +SRERVRQ+E +A RKL+  +    L
Sbjct: 504 LDSLGTREKQVIRWRFGMEDGRMKTLQEIGELMGVSRERVRQIESSAFRKLKNKKRSNHL 563

Query: 14  EHYL 3
           + YL
Sbjct: 564 QQYL 567



 Score =  105 bits (263), Expect(2) = 2e-47
 Identities = 49/98 (50%), Positives = 69/98 (70%)
 Frame = -2

Query: 871 SNRRLLTANEEISFSRKVQDLHKLEKIKQQYKDKMGKEPTINQWAEAVGIDQKSLRKRLE 692
           S+ +LLT  EE   S  +QDL KLE+++ +  ++ G++PT +QWA A G+DQKSLRKR+ 
Sbjct: 267 SSSKLLTVREEHELSAGIQDLLKLERLQAELTERCGRQPTFSQWASAAGVDQKSLRKRIN 326

Query: 691 EGYESRSKMVSCNLRLVVSIATKYQNMGIGLQDLVQAG 578
            G + + KM+  N+RLV+SIA  YQ  G+ LQDLVQ G
Sbjct: 327 YGTQCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEG 364


>gb|EOY10370.1| RNApolymerase sigma subunit 2 [Theobroma cacao]
          Length = 623

 Score =  108 bits (271), Expect(2) = 2e-47
 Identities = 60/192 (31%), Positives = 105/192 (54%), Gaps = 8/192 (4%)
 Frame = -1

Query: 554  STYAHWWIRQAINKTLTSQSKLVGVPANAVEAASQLRDTKTLFVEKHHRSPTLQELSDIT 375
            STYAHWWI+QA+ K+L+ QS+ + +P + VEA  ++++ +     ++ R P  +E+++ T
Sbjct: 427  STYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPDNEEVAEAT 486

Query: 374  GFSKTRIKDVMSYRKTFVSLDSPAPGKDE--------AYLASVVDDPDQLSVDTITSEEL 219
            G S  R+  V+   K   SLD                + LA V+ DP+  + + +  ++ 
Sbjct: 487  GLSMKRLTAVLLTPKAPRSLDQKIGINQNLKPSVCPVSSLAEVIADPEAETAEDMLIKQF 546

Query: 218  GQRDIDNVLRTLTPKEXXXXXXXXXXXXXXXRTLQEVGEHFSLSRERVRQMERTAMRKLR 39
             ++D++ VL +L+ +E               +TLQE+GE   +SRER+RQ+E  A RKL+
Sbjct: 547  MRKDLEKVLDSLSQRERQVIRWRFGMEDGRMKTLQEIGELMGVSRERIRQIESCAFRKLK 606

Query: 38   ENQDIRDLEHYL 3
              +  + L+ YL
Sbjct: 607  NKKRTKHLQQYL 618



 Score =  108 bits (269), Expect(2) = 2e-47
 Identities = 51/98 (52%), Positives = 68/98 (69%)
 Frame = -2

Query: 871 SNRRLLTANEEISFSRKVQDLHKLEKIKQQYKDKMGKEPTINQWAEAVGIDQKSLRKRLE 692
           S  RLLTANEE+  S  +QDL KLE+++++  ++ G +PT  QWA A G+DQK+LR RL 
Sbjct: 310 STSRLLTANEELELSEGIQDLLKLERLQEELAERCGGQPTFAQWAAAAGVDQKTLRSRLN 369

Query: 691 EGYESRSKMVSCNLRLVVSIATKYQNMGIGLQDLVQAG 578
            G   + KM+  N+RLV+SIA  YQ  G+ LQDLVQ G
Sbjct: 370 YGVHCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEG 407


>ref|XP_006577887.1| PREDICTED: RNA polymerase sigma factor sigB-like [Glycine max]
          Length = 564

 Score =  112 bits (279), Expect(2) = 2e-47
 Identities = 57/184 (30%), Positives = 101/184 (54%)
 Frame = -1

Query: 554 STYAHWWIRQAINKTLTSQSKLVGVPANAVEAASQLRDTKTLFVEKHHRSPTLQELSDIT 375
           STYAHWWI+QA+ K+L+ QS+ + +P + VEA  ++++ +     ++ R P  +E+++ T
Sbjct: 379 STYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRQPDDEEVAEAT 438

Query: 374 GFSKTRIKDVMSYRKTFVSLDSPAPGKDEAYLASVVDDPDQLSVDTITSEELGQRDIDNV 195
           G S  R+  V+   K   SL+           + V+ DPD  + +    ++  ++D++  
Sbjct: 439 GLSMKRLNAVLMTPKAPRSLEQKIGINQNLKPSEVISDPDAETAEEQLLKQFMKKDLEEA 498

Query: 194 LRTLTPKEXXXXXXXXXXXXXXXRTLQEVGEHFSLSRERVRQMERTAMRKLRENQDIRDL 15
           L +L P+E               +TLQE+GE   +SRER+RQ+E +A +KL+  +    L
Sbjct: 499 LDSLNPRERQVVRWRFGMDDGRTKTLQEIGEMLGVSRERIRQIESSAFKKLKNKKRTNHL 558

Query: 14  EHYL 3
           + YL
Sbjct: 559 QQYL 562



 Score =  105 bits (261), Expect(2) = 2e-47
 Identities = 52/98 (53%), Positives = 65/98 (66%)
 Frame = -2

Query: 871 SNRRLLTANEEISFSRKVQDLHKLEKIKQQYKDKMGKEPTINQWAEAVGIDQKSLRKRLE 692
           S  RLLT  EEI  S  +QDL KLEKI++   ++ G +PT  QWA   G+DQK+LRKRL 
Sbjct: 262 SASRLLTPTEEIKLSAGIQDLLKLEKIQEDLAERFGSQPTFAQWAAVAGVDQKTLRKRLN 321

Query: 691 EGYESRSKMVSCNLRLVVSIATKYQNMGIGLQDLVQAG 578
            G   + KM+  N+RLV+SIA  YQ  G+ LQDLVQ G
Sbjct: 322 YGIFCKDKMIKSNIRLVISIAKNYQGSGMNLQDLVQEG 359


>gb|EMJ05079.1| hypothetical protein PRUPE_ppa006657mg [Prunus persica]
          Length = 401

 Score =  109 bits (272), Expect(2) = 2e-47
 Identities = 58/184 (31%), Positives = 101/184 (54%)
 Frame = -1

Query: 554 STYAHWWIRQAINKTLTSQSKLVGVPANAVEAASQLRDTKTLFVEKHHRSPTLQELSDIT 375
           STYAHWWI+QA+ K+L+ QS+ + +P + VEA  ++R+ K      + R P  +E+++ T
Sbjct: 216 STYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVREAKKQLYSVNGRHPNDEEVAEAT 275

Query: 374 GFSKTRIKDVMSYRKTFVSLDSPAPGKDEAYLASVVDDPDQLSVDTITSEELGQRDIDNV 195
           G S  R+  V+   K   SL+           + V+ DP+  + + +  ++  ++D++ V
Sbjct: 276 GLSMKRLAAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEDMLMKKFMKQDLEKV 335

Query: 194 LRTLTPKEXXXXXXXXXXXXXXXRTLQEVGEHFSLSRERVRQMERTAMRKLRENQDIRDL 15
           L +L  +E               +TLQE+GE   +SRER+RQ+E  A RKL+  +  + L
Sbjct: 336 LDSLNAREKQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESCAFRKLKNKKRTKHL 395

Query: 14  EHYL 3
           + Y+
Sbjct: 396 QQYV 399



 Score =  107 bits (268), Expect(2) = 2e-47
 Identities = 52/95 (54%), Positives = 68/95 (71%)
 Frame = -2

Query: 862 RLLTANEEISFSRKVQDLHKLEKIKQQYKDKMGKEPTINQWAEAVGIDQKSLRKRLEEGY 683
           RLLTANEEI  S  +Q+L KLEK++++   + G +PTI QWA A G+DQK+LRKR+  G 
Sbjct: 102 RLLTANEEIELSEGIQELLKLEKLQEELVQRCGGQPTIAQWAAAAGVDQKTLRKRINYGI 161

Query: 682 ESRSKMVSCNLRLVVSIATKYQNMGIGLQDLVQAG 578
             + KM+  N+RLV+SIA  YQ  G+ LQDLVQ G
Sbjct: 162 LCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQQG 196


>ref|XP_006417677.1| hypothetical protein EUTSA_v10007187mg [Eutrema salsugineum]
           gi|557095448|gb|ESQ36030.1| hypothetical protein
           EUTSA_v10007187mg [Eutrema salsugineum]
          Length = 579

 Score =  112 bits (280), Expect(2) = 3e-47
 Identities = 60/184 (32%), Positives = 103/184 (55%)
 Frame = -1

Query: 554 STYAHWWIRQAINKTLTSQSKLVGVPANAVEAASQLRDTKTLFVEKHHRSPTLQELSDIT 375
           STYAHWWI+QA+ K+L+ QS+++ +P + VEA  ++++ +     +  + P  +E+++ T
Sbjct: 394 STYAHWWIKQAVRKSLSDQSRMIRLPFHMVEATYRVKEARKQLYSETGKQPENEEVAEAT 453

Query: 374 GFSKTRIKDVMSYRKTFVSLDSPAPGKDEAYLASVVDDPDQLSVDTITSEELGQRDIDNV 195
           G S  R+  V+   K   SLD           + V+ DP+  + + I  ++  ++D+D V
Sbjct: 454 GLSMKRLMAVLLSPKPPRSLDQKIGINQNLKPSEVIADPEAETSEDILIKQFMRQDLDKV 513

Query: 194 LRTLTPKEXXXXXXXXXXXXXXXRTLQEVGEHFSLSRERVRQMERTAMRKLRENQDIRDL 15
           L +L+ +E               +TLQE+GE   +SRERVRQ+E +A RKL+  +    L
Sbjct: 514 LDSLSTREKQVIRWRFGMEDGRMKTLQEIGETMGVSRERVRQIESSAFRKLKNKKRSNHL 573

Query: 14  EHYL 3
           + YL
Sbjct: 574 QQYL 577



 Score =  104 bits (259), Expect(2) = 3e-47
 Identities = 49/98 (50%), Positives = 68/98 (69%)
 Frame = -2

Query: 871 SNRRLLTANEEISFSRKVQDLHKLEKIKQQYKDKMGKEPTINQWAEAVGIDQKSLRKRLE 692
           S+ +LLTA EE   S  +QDL KLE+++ +  ++ G +PT  QWA A G+DQKSLRKR+ 
Sbjct: 277 SSSKLLTAREEQELSEGIQDLLKLERLQAELTERCGHQPTFAQWASAAGVDQKSLRKRIN 336

Query: 691 EGYESRSKMVSCNLRLVVSIATKYQNMGIGLQDLVQAG 578
            G + + +M+  N+RLV+SIA  YQ  G+ LQDLVQ G
Sbjct: 337 YGTQCKDRMIKSNIRLVISIAKNYQGAGMNLQDLVQEG 374


>gb|AAB69385.1| sigma factor 2 [Arabidopsis thaliana]
          Length = 574

 Score =  113 bits (283), Expect(2) = 3e-47
 Identities = 61/184 (33%), Positives = 103/184 (55%)
 Frame = -1

Query: 554 STYAHWWIRQAINKTLTSQSKLVGVPANAVEAASQLRDTKTLFVEKHHRSPTLQELSDIT 375
           STYAHWWI+QA+ K+L+ QS+++ +P + VEA  ++++ +     +  + P  +E+++ T
Sbjct: 387 STYAHWWIKQAVRKSLSDQSRMIRLPFHMVEATYRVKEARKQLYSETGKHPKNEEIAEAT 446

Query: 374 GFSKTRIKDVMSYRKTFVSLDSPAPGKDEAYLASVVDDPDQLSVDTITSEELGQRDIDNV 195
           G S  R+  V+   K   SLD           + V+ DP+ ++ + I  +E  ++D+D V
Sbjct: 447 GLSMKRLMAVLLSPKPPRSLDRKIGMNQNLKPSEVIADPEAVTSEDILIKEFMRQDLDKV 506

Query: 194 LRTLTPKEXXXXXXXXXXXXXXXRTLQEVGEHFSLSRERVRQMERTAMRKLRENQDIRDL 15
           L +L  +E               +TLQE+GE   +SRERVRQ+E +A RKL+  +    L
Sbjct: 507 LDSLGTREKQVIRWRFGMEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKLKNKKRNNHL 566

Query: 14  EHYL 3
           + YL
Sbjct: 567 QQYL 570



 Score =  103 bits (256), Expect(2) = 3e-47
 Identities = 49/102 (48%), Positives = 68/102 (66%)
 Frame = -2

Query: 883 TKNQSNRRLLTANEEISFSRKVQDLHKLEKIKQQYKDKMGKEPTINQWAEAVGIDQKSLR 704
           T + S  +LLT  EE   S  +QDL KLE+++ +  ++ G++PT  QWA A G+DQKSLR
Sbjct: 266 TTSSSKLKLLTVREEHELSAGIQDLLKLERLQTELTERSGRQPTFAQWASAAGVDQKSLR 325

Query: 703 KRLEEGYESRSKMVSCNLRLVVSIATKYQNMGIGLQDLVQAG 578
           +R+  G   + KM+  N+RLV+SIA  YQ  G+ LQDLVQ G
Sbjct: 326 QRIHHGTLCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEG 367