BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ephedra25_contig00011317
         (2231 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002321582.1| hypothetical protein POPTR_0015s08500g [Popu...   739   0.0  
ref|XP_006836643.1| hypothetical protein AMTR_s00088p00026960 [A...   735   0.0  
ref|XP_002511431.1| RNA-dependent RNA polymerase, putative [Rici...   731   0.0  
gb|EOY20662.1| RNA-dependent RNA polymerase 2 isoform 1 [Theobro...   728   0.0  
ref|XP_004298927.1| PREDICTED: RNA-dependent RNA polymerase 2-li...   728   0.0  
gb|EXC16034.1| RNA-dependent RNA polymerase 2 [Morus notabilis]       727   0.0  
ref|XP_002311536.1| RNA-directed RNA Polymerase family protein [...   723   0.0  
ref|XP_006476748.1| PREDICTED: RNA-dependent RNA polymerase 2-li...   719   0.0  
gb|ABV24845.1| RNA-dependent RNA polymerase [Nicotiana glutinosa...   716   0.0  
ref|XP_004498236.1| PREDICTED: RNA-dependent RNA polymerase 1-li...   716   0.0  
emb|CAA09896.1| RNA-directed RNA polymerase [Petunia x hybrida]       716   0.0  
ref|XP_006469265.1| PREDICTED: RNA-dependent RNA polymerase 1-li...   714   0.0  
gb|ADU04140.1| hypothetical protein [Gossypium hirsutum]              712   0.0  
ref|XP_002280099.1| PREDICTED: RNA-dependent RNA polymerase 2 [V...   712   0.0  
gb|ABQ45352.1| RNA-dependent RNA polymerase [Gossypium hirsutum]      712   0.0  
gb|ADU04145.1| hypothetical protein [Gossypium hirsutum]              711   0.0  
gb|EMJ12511.1| hypothetical protein PRUPE_ppa000513mg [Prunus pe...   711   0.0  
emb|CAA09697.1| RNA-directed RNA polymerase [Nicotiana tabacum]       709   0.0  
gb|ABE01124.1| RNA-dependent RNA polymerase [Gossypium hirsutum]      709   0.0  
ref|XP_004978058.1| PREDICTED: probable RNA-dependent RNA polyme...   707   0.0  

>ref|XP_002321582.1| hypothetical protein POPTR_0015s08500g [Populus trichocarpa]
            gi|222868578|gb|EEF05709.1| hypothetical protein
            POPTR_0015s08500g [Populus trichocarpa]
          Length = 1110

 Score =  739 bits (1907), Expect = 0.0
 Identities = 374/679 (55%), Positives = 492/679 (72%), Gaps = 6/679 (0%)
 Frame = +3

Query: 6    RPWRTNVYERIIAILNNGIFINNKRFEFLAFSSSQLRENSVWMFSSSKYLTAEHIRKWMG 185
            +P+RT +Y RI++IL +G  I  KRFEFLAFS+SQLR NSVWMF+S+  + AE IRKWMG
Sbjct: 431  KPFRTGIYHRILSILRDGFVIGAKRFEFLAFSASQLRSNSVWMFASNNGVKAEDIRKWMG 490

Query: 186  NFEDIRNVAKYAARMGQSFSSSWGTEIVKEHEVHAIEDIEVTTKGVKYCFSDGIGKISSK 365
             F+ IR+V+K AARMGQ FSSS  T +V   +V  I DIEVTT G+ YCFSDGIGKIS  
Sbjct: 491  CFDKIRSVSKCAARMGQLFSSSLQTFVVPVQDVEIIPDIEVTTDGIDYCFSDGIGKISLS 550

Query: 366  MARRIAKRCGLDPTPSAFQIRYAGYKGVVAVDPTSYHKLSLRPSMLKFNSDNRTLDVLNW 545
             A+++A +CGL  TPSAFQIRY GYKGVVAVD  S+ KLSLR SMLKF+S+NR L+V  W
Sbjct: 551  FAKQVAHKCGLSHTPSAFQIRYGGYKGVVAVDRNSFRKLSLRSSMLKFDSENRMLNVTKW 610

Query: 546  SKPLPCYLNREIIILLSTLGVPDESFQSLQRDELQKFNQMLENEENAIDILHLMSDRDSK 725
            S+ +PCYLNREII LLSTLGV DE FQ+LQ+ +L +  +ML N+E+A+D+L  ++  DSK
Sbjct: 611  SESMPCYLNREIISLLSTLGVADEIFQALQQKQLYRLRKMLTNKESALDVLENLAWADSK 670

Query: 726  -ILIEMLSSGCSPSSEPFLATMLQAFRDFHLSELKSKCRIFVPRGNVLIGCLDETRTLDY 902
             IL++ML  G  P+ EP+L+ MLQA+ +  L EL+S+CRIFVP+G +LIGCLDE+  LDY
Sbjct: 671  NILVQMLLQGYEPNVEPYLSMMLQAYHENSLMELRSRCRIFVPKGRILIGCLDESGILDY 730

Query: 903  GEVFIQVSKTKIKGNYDEASSFEELE--THVIEGDVVVAKNPCLHPGDIRKLKAVNVPGL 1076
            G+V+++++ TK +    + S F +++  T  I G+V V KNPCLHPGDIR L+AV    L
Sbjct: 731  GQVYVRITMTKAELQCCDQSFFRKVDESTSTIIGEVAVTKNPCLHPGDIRVLEAVYDVEL 790

Query: 1077 VH--MVDCAVFPQKGNRPHPNECSGSDLDGDLYFVSWDPMLVPPKKEPEEPMDYTGRPAI 1250
                +VDC +FPQ G RPHPNECSG DLDGD +F+SWD  L+P     E PMDY G    
Sbjct: 791  EEKGLVDCIIFPQNGGRPHPNECSGGDLDGDQFFISWDEGLLP--CHTEAPMDYVGGRQR 848

Query: 1251 RLDHNVTIEEIQEYFVNYMLNDSLGIIANAHVVHADREPLKARSEKCLELARLHAKAVDF 1430
             +DHNVT+EEIQ +FV+YM+ND+LG I+ AH+VHAD EP KARSEKCL+LA LH+ AVDF
Sbjct: 849  IMDHNVTLEEIQRFFVDYMINDTLGAISTAHLVHADCEPDKARSEKCLQLATLHSMAVDF 908

Query: 1431 AKTGAPAEMPLRLIPREYPDFMEKEGKPMYESTSILGKLYRDSYDRMEEDPHVLMDSRRV 1610
            AKTGAPAEMPL L PRE+PDFME+  K MY S  +LGKLYRD +D   ++    M S+++
Sbjct: 909  AKTGAPAEMPLYLKPREFPDFMERAEKQMYISDGVLGKLYRDIHDSTRQERSNFMWSKKI 968

Query: 1611 CKINYDKSFEYEGFQDHLKEAELHKSWYDSKLAALMKYYGVQNEAEIISGNIRMPSRGTI 1790
             +  YD+  E +GF+D L  A ++K  Y  K++ LM YYG + E EI++GN+R       
Sbjct: 969  AEATYDQDLEVKGFEDFLGIASIYKEKYMEKMSTLMDYYGAKTEDEILTGNLRHRPTYLQ 1028

Query: 1791 NEKKKHSDRKDKILMAVEALRTEARGWFDESCKLHHKNFALASAWYHVTYHSSYW-SKGN 1967
             + +K+ D KD+IL++++ L+ EA+ WF+ SC    ++  +ASAWYHVTYH +Y+  + N
Sbjct: 1029 RDNRKYGDVKDRILVSLKNLKKEAKEWFESSCN-PTEHQCMASAWYHVTYHPTYFHERMN 1087

Query: 1968 LISFPWIRYDLILKTKRYN 2024
             +SFPWI  D++L  K  N
Sbjct: 1088 CLSFPWIVGDILLNIKSLN 1106


>ref|XP_006836643.1| hypothetical protein AMTR_s00088p00026960 [Amborella trichopoda]
            gi|548839203|gb|ERM99496.1| hypothetical protein
            AMTR_s00088p00026960 [Amborella trichopoda]
          Length = 1107

 Score =  735 bits (1897), Expect = 0.0
 Identities = 371/677 (54%), Positives = 488/677 (72%), Gaps = 5/677 (0%)
 Frame = +3

Query: 6    RPWRTNVYERIIAILNNGIFINNKRFEFLAFSSSQLRENSVWMFSSSKYLTAEHIRKWMG 185
            +P+RTN+Y+RI+++L +GI + +KRFEFLAFS+SQLR N+VWMF+S++ ++ E IR+WMG
Sbjct: 429  KPYRTNIYKRIVSVLRDGIVLGSKRFEFLAFSASQLRSNAVWMFASNENISVESIREWMG 488

Query: 186  NFEDIRNVAKYAARMGQSFSSSWGTEIVKEHEVHAIEDIEVTTKGVKYCFSDGIGKISSK 365
             F+++R +AK AARMGQ FSSS  T  V  HEV  I DIEVTT G++YCFSDGIGKIS  
Sbjct: 489  EFKNLRCIAKCAARMGQLFSSSTPTLSVPLHEVQVIPDIEVTTDGIEYCFSDGIGKISLA 548

Query: 366  MARRIAKRCGLDPTPSAFQIRYAGYKGVVAVDPTSYHKLSLRPSMLKFNSDNRTLDVLNW 545
             AR++A+RCGL   PSAFQIRY GYKGV+A+DPTS+HKL+LRPSM KFNS+N  L V  W
Sbjct: 549  FARQVARRCGLKQPPSAFQIRYGGYKGVIAIDPTSFHKLALRPSMQKFNSNNTMLCVTKW 608

Query: 546  SKPLPCYLNREIIILLSTLGVPDESFQSLQRDELQKFNQMLENEENAIDILHLMSDRDSK 725
            S+ +PCYLNREII LLSTL + D  F+++Q+ ++   + ML   + A+++L  M   D K
Sbjct: 609  SQSMPCYLNREIITLLSTLEIADHKFEAMQKQQMTLLDDMLTKRDVALNVLEDMIVGDYK 668

Query: 726  -ILIEMLSSGCSPSSEPFLATMLQAFRDFHLSELKSKCRIFVPRGNVLIGCLDETRTLDY 902
             +L +ML  GC PS+EP+L+ MLQA RD  LS+++SKCR+FV +G VL+GCLDE+ TL  
Sbjct: 669  EVLTKMLLHGCDPSTEPYLSMMLQALRDHQLSDIRSKCRLFVSKGRVLLGCLDESGTLSQ 728

Query: 903  GEVFIQVSKTKIKGNYDEASSFEELE--THVIEGDVVVAKNPCLHPGDIRKLKAVNVPGL 1076
            GEVF++V+ TK +   D    FE ++  T V+ G VVV KNPCLHPGD+R L+AV+   L
Sbjct: 729  GEVFLRVTMTKAELENDGQPFFERIDETTSVVVGAVVVTKNPCLHPGDVRVLQAVSGLEL 788

Query: 1077 VH--MVDCAVFPQKGNRPHPNECSGSDLDGDLYFVSWDPMLVPPKKEPEEPMDYTGRPAI 1250
            V   MVDC VFPQ G RPHPNECSG DLDGDL+FV WD  L+P   +P   MDY GR   
Sbjct: 789  VDQGMVDCLVFPQNGERPHPNECSGGDLDGDLFFVCWDKDLIPTTNDP--AMDYLGRRPR 846

Query: 1251 RLDHNVTIEEIQEYFVNYMLNDSLGIIANAHVVHADREPLKARSEKCLELARLHAKAVDF 1430
             +DH VT+EEIQE+FV+YM+ND+LG I+NAH+V ADRE  KARS KC+ELA+LH+ AVDF
Sbjct: 847  IMDHEVTMEEIQEFFVDYMINDNLGAISNAHLVLADREKSKARSPKCIELAKLHSMAVDF 906

Query: 1431 AKTGAPAEMPLRLIPREYPDFMEKEGKPMYESTSILGKLYRDSYDRMEEDPHVLMDSRRV 1610
            AKTGAPAEMP  L+ +EYPDFME+  K  Y S  ILGKLYR + +        L+ S+ V
Sbjct: 907  AKTGAPAEMPRSLMLKEYPDFMERGEKSTYASPGILGKLYRLAKEASNSQSFELVSSKNV 966

Query: 1611 CKINYDKSFEYEGFQDHLKEAELHKSWYDSKLAALMKYYGVQNEAEIISGNIRMPSRGTI 1790
                YD +   +GF++ ++ A  HK  Y  KL  LM YYG ++E+EI+SGNI   S    
Sbjct: 967  ALPFYDTNLLAKGFEEFIELAVKHKEAYGQKLQELMDYYGAESESEILSGNISKKSGYLQ 1026

Query: 1791 NEKKKHSDRKDKILMAVEALRTEARGWFDESCKLHHKNFALASAWYHVTYHSSYWSKGNL 1970
             + +K+ + KD+IL+AV+ L+ EA+GWF  SC+  +++  LASAWYHVTY   ++SK N 
Sbjct: 1027 RDNRKYGEVKDRILIAVKNLQREAQGWFKSSCE-PNQSSKLASAWYHVTYRPDHFSKVNF 1085

Query: 1971 ISFPWIRYDLILKTKRY 2021
             SFPWI  D++L  K +
Sbjct: 1086 FSFPWILADVLLNIKAF 1102


>ref|XP_002511431.1| RNA-dependent RNA polymerase, putative [Ricinus communis]
            gi|223550546|gb|EEF52033.1| RNA-dependent RNA polymerase,
            putative [Ricinus communis]
          Length = 983

 Score =  731 bits (1888), Expect = 0.0
 Identities = 365/684 (53%), Positives = 491/684 (71%), Gaps = 6/684 (0%)
 Frame = +3

Query: 6    RPWRTNVYERIIAILNNGIFINNKRFEFLAFSSSQLRENSVWMFSSSKYLTAEHIRKWMG 185
            +P+RT +Y RI++IL +GI I  K+FEFLAFS+SQLR NSVWMF+S+    AE IR+WMG
Sbjct: 286  KPFRTGIYHRILSILRDGIVIGAKKFEFLAFSASQLRSNSVWMFASNDKKKAEEIREWMG 345

Query: 186  NFEDIRNVAKYAARMGQSFSSSWGTEIVKEHEVHAIEDIEVTTKGVKYCFSDGIGKISSK 365
             F  I +++K AARMGQ FSSS  T IV   ++  I DIEVT+ G+ YCFSDGIGKIS  
Sbjct: 346  CFNKIHSISKCAARMGQLFSSSKQTFIVSPQDMEIIPDIEVTSDGINYCFSDGIGKISLS 405

Query: 366  MARRIAKRCGLDPTPSAFQIRYAGYKGVVAVDPTSYHKLSLRPSMLKFNSDNRTLDVLNW 545
             AR++A++CGL+ TPSAFQIRY GYKGV+AVD  S+ KLSLR SM KF S+NR L+V  W
Sbjct: 406  FARQVAQKCGLNRTPSAFQIRYGGYKGVIAVDRNSFRKLSLRDSMCKFESENRMLNVTKW 465

Query: 546  SKPLPCYLNREIIILLSTLGVPDESFQSLQRDELQKFNQMLENEENAIDILHLMSDRDSK 725
            S+ +PCYLNREII LL+TLGV DE F+ LQ+ +LQ  N+ML N E+A+++L  ++  + K
Sbjct: 466  SESMPCYLNREIITLLTTLGVKDEIFEGLQQQQLQLLNRMLTNRESALNVLENLAWANCK 525

Query: 726  -ILIEMLSSGCSPSSEPFLATMLQAFRDFHLSELKSKCRIFVPRGNVLIGCLDETRTLDY 902
             ILI+ML  G  P+ EP+L+ MLQA+ +  L EL+S+CRIFVP+G +LIGCLDETR LDY
Sbjct: 526  NILIKMLVQGYEPNVEPYLSMMLQAYHENLLVELRSRCRIFVPKGRILIGCLDETRILDY 585

Query: 903  GEVFIQVSKTKIKGNYDEASSFEELE--THVIEGDVVVAKNPCLHPGDIRKLKAVNVPGL 1076
            G+V+++++ TK +    + +SF  ++  T V+ G V+V KNPCLHPGDIR L+AV    L
Sbjct: 586  GQVYVRITMTKAELQDADQASFHRVDETTAVVTGKVIVTKNPCLHPGDIRVLEAVYEVEL 645

Query: 1077 VH--MVDCAVFPQKGNRPHPNECSGSDLDGDLYFVSWDPMLVPPKKEPEEPMDYTGRPAI 1250
                +VDC +FPQKG RPHPNECSG DLDGD +F+SWD  L+P   E E PMDY GR   
Sbjct: 646  EEKGLVDCILFPQKGERPHPNECSGGDLDGDQFFISWDKGLIP--GETESPMDYQGRRPR 703

Query: 1251 RLDHNVTIEEIQEYFVNYMLNDSLGIIANAHVVHADREPLKARSEKCLELARLHAKAVDF 1430
            ++DH+VT+EEIQ++F++YM+ND+LG I+ AH+VHADREP KARS KCL+LA LH+ AVDF
Sbjct: 704  KMDHDVTLEEIQKFFIDYMINDTLGAISTAHLVHADREPDKARSSKCLQLAELHSMAVDF 763

Query: 1431 AKTGAPAEMPLRLIPREYPDFMEKEGKPMYESTSILGKLYRDSYDRMEEDPHVLMDSRRV 1610
            AKTGAPAEMP  L P+E+PDFME+  K MY S  +LGKLYR + D   +     + +  +
Sbjct: 764  AKTGAPAEMPKALKPKEFPDFMERIDKKMYISGGVLGKLYRGTLDSTRQQRSKFVWTENI 823

Query: 1611 CKINYDKSFEYEGFQDHLKEAELHKSWYDSKLAALMKYYGVQNEAEIISGNIRMPSRGTI 1790
             +  YD   E +GF++ ++ A  HK  Y  KL+ LM YY  + E EI++GN++  +    
Sbjct: 824  AEATYDHDLEVKGFEEFVEIAISHKDMYVEKLSGLMDYYEAKKEDEILTGNLQNKAMYLQ 883

Query: 1791 NEKKKHSDRKDKILMAVEALRTEARGWFDESCKLHHKNFALASAWYHVTYHSSYWSKG-N 1967
             + +++ D KD+IL++V++L+ EA+ WF+  C+   K   LASAWYHVTYH SY+ +G  
Sbjct: 884  RDNRRYGDTKDRILISVKSLQKEAKEWFESCCQAKEKQ-RLASAWYHVTYHPSYFQEGIT 942

Query: 1968 LISFPWIRYDLILKTKRYNDTKIQ 2039
             +SFPWI  D++L  K  N   ++
Sbjct: 943  CLSFPWIVADILLNIKSANSKNLK 966


>gb|EOY20662.1| RNA-dependent RNA polymerase 2 isoform 1 [Theobroma cacao]
            gi|508773407|gb|EOY20663.1| RNA-dependent RNA polymerase
            2 isoform 1 [Theobroma cacao]
          Length = 1149

 Score =  728 bits (1878), Expect = 0.0
 Identities = 373/702 (53%), Positives = 508/702 (72%), Gaps = 10/702 (1%)
 Frame = +3

Query: 6    RPWRTNVYERIIAILNNGIFINNKRFEFLAFSSSQLRENSVWMFSSSKYLTAEHIRKWMG 185
            +P+RT +Y RI+++L +GI I +KRFEFLAFS+SQLR NSVWMF+S+  +TAE +R+WMG
Sbjct: 444  KPFRTKIYHRILSVLQHGIVIGDKRFEFLAFSASQLRSNSVWMFASNDKVTAEDVREWMG 503

Query: 186  NFEDIRNVAKYAARMGQSFSSSWGTEIVKEHEVHAIEDIEVTTKGVKYCFSDGIGKISSK 365
             F+ IR+V+K AARMGQ FSSS  T +V   +V  I DIEVT+ G+ YCFSDGIGKIS  
Sbjct: 504  CFKKIRSVSKCAARMGQLFSSSLPTLVVPVQDVKIIPDIEVTSDGINYCFSDGIGKISLP 563

Query: 366  MARRIAKRCGLDPTPSAFQIRYAGYKGVVAVDPTSYHKLSLRPSMLKFNSDNRTLDVLNW 545
             AR +A++CGL+ TPSAFQIRY GYKGVVAVD  S+ K+SLR SM KF S  R L+V  W
Sbjct: 564  FAREVAQKCGLNDTPSAFQIRYGGYKGVVAVDRNSFRKMSLRGSMHKFESKIRMLNVTKW 623

Query: 546  SKPLPCYLNREIIILLSTLGVPDESFQSLQRDELQKFNQMLENEENAIDILHLMSDRDSK 725
            S+ +PC+LNREI+ LLSTLG+ DE+F++LQ+++L    QML N E A+D+L  +   DS+
Sbjct: 624  SESMPCFLNREIVTLLSTLGIKDEAFETLQQEQLHLLGQMLTNREAALDVLQSLCGADSQ 683

Query: 726  -ILIEMLSSGCSPSSEPFLATMLQAFRDFHLSELKSKCRIFVPRGNVLIGCLDETRTLDY 902
             IL++ML  G  P+ EP+L+ ML A     LS+LK +CRI+VP+G VL+GCLDET TL+Y
Sbjct: 684  NILVKMLLQGYEPNVEPYLSMMLLANHVSLLSDLKCRCRIYVPKGQVLVGCLDETATLNY 743

Query: 903  GEVFIQVSKTKIKGNYDEASSFEELE--THVIEGDVVVAKNPCLHPGDIRKLKAVNVPGL 1076
            G+V++++S  K +  + + + F +++  T ++ G VVV KNPCLHPGD+R L+AV    L
Sbjct: 744  GQVYVRLSIKKAELEHADQNFFHKVDEKTAIVIGKVVVTKNPCLHPGDVRVLEAVYEAEL 803

Query: 1077 VH--MVDCAVFPQKGNRPHPNECSGSDLDGDLYFVSWDPMLVPPKKEPEEPMDYTG-RPA 1247
                +VDC VFPQKG RPHPNECSG DLDGD +F+SWD  L+P   + + PMDYTG RP 
Sbjct: 804  EDKGLVDCLVFPQKGERPHPNECSGGDLDGDQFFISWDKDLIP--CQTDAPMDYTGSRPR 861

Query: 1248 IRLDHNVTIEEIQEYFVNYMLNDSLGIIANAHVVHADREPLKARSEKCLELARLHAKAVD 1427
            I +DH VT+EEIQ++FV+YM+ND+LG I+ AH+VHADREP KARSEKCLELA LH+ AVD
Sbjct: 862  I-MDHEVTLEEIQKFFVDYMINDTLGAISTAHLVHADREPDKARSEKCLELATLHSMAVD 920

Query: 1428 FAKTGAPAEMPLRLIPREYPDFMEKEGKPMYESTSILGKLYRDSYDRMEEDPHVLMDSRR 1607
            FAKTGAPAEMP  L PRE+PDFM++  KPMY S  +LGKLYR + +   ++    + S++
Sbjct: 921  FAKTGAPAEMPRSLKPREFPDFMQRVDKPMYASLGVLGKLYRATINSTVQERSKFVWSKK 980

Query: 1608 VCKINYDKSFEYEGFQDHLKEAELHKSWYDSKLAALMKYYGVQNEAEIISGNIRMPSRGT 1787
            + +  YD   E  GF+  L  A+ HK  Y+ K++ LM YY V++E EI++GN+R  +   
Sbjct: 981  MAEALYDHDLEVNGFEAFLSTAQTHKDMYEEKMSFLMNYYEVESEDEILTGNMRNKATFL 1040

Query: 1788 INEKKKHSDRKDKILMAVEALRTEARGWFDESCKLHHKNFALASAWYHVTYHSSYW--SK 1961
              + +++ D KD+IL++++ L+ EAR  F+ SCK+  ++  LASAWYHVTYH +Y   S 
Sbjct: 1041 QRDNRRYGDMKDRILLSMKNLQREARERFENSCKV-GEHQRLASAWYHVTYHPNYCQESM 1099

Query: 1962 GNLISFPWIRYDLILKTKRYNDTKIQK*KELVS--FQKSKKR 2081
             + +SFPWI  D++LK K  N  +IQ+ + + S  + KS +R
Sbjct: 1100 KSCLSFPWIVGDILLKIKSVNSREIQREQPVFSHVYHKSPRR 1141


>ref|XP_004298927.1| PREDICTED: RNA-dependent RNA polymerase 2-like [Fragaria vesca subsp.
            vesca]
          Length = 1136

 Score =  728 bits (1878), Expect = 0.0
 Identities = 361/682 (52%), Positives = 495/682 (72%), Gaps = 6/682 (0%)
 Frame = +3

Query: 6    RPWRTNVYERIIAILNNGIFINNKRFEFLAFSSSQLRENSVWMFSSSKYLTAEHIRKWMG 185
            +P+RT +Y+RI++IL +GI I +KRFEFLAFS+SQLR NSVWMF+S+  + AE IR WMG
Sbjct: 439  KPFRTGIYQRILSILRDGIVIGDKRFEFLAFSASQLRSNSVWMFASNDSVKAEDIRDWMG 498

Query: 186  NFEDIRNVAKYAARMGQSFSSSWGTEIVKEHEVHAIEDIEVTTKGVKYCFSDGIGKISSK 365
             F  IR+V+K AARMGQ FSSS  T  V + +V  I DIE TT GV YCFSDGIGKIS  
Sbjct: 499  CFNKIRSVSKCAARMGQLFSSSTQTLTVPQKDVELIPDIETTTDGVSYCFSDGIGKISLS 558

Query: 366  MARRIAKRCGLDPTPSAFQIRYAGYKGVVAVDPTSYHKLSLRPSMLKFNSDNRTLDVLNW 545
             AR++A++CGL+ TPSAFQIRY GYKGV+AVD  S+ KLSLR SMLKF+SDNR L+V  W
Sbjct: 559  FARQVAQKCGLNDTPSAFQIRYGGYKGVIAVDRNSFRKLSLRSSMLKFDSDNRMLNVTKW 618

Query: 546  SKPLPCYLNREIIILLSTLGVPDESFQSLQRDELQKFNQMLENEENAIDILHLMSDRDS- 722
            S  +PC+LNREII L+STLGV DE+F++LQ+++L    +M ++   A+  L  +S  DS 
Sbjct: 619  SSSMPCFLNREIITLMSTLGVEDEAFEALQQEQLDLLGRMRKDRNVALSSLEKLSGADSN 678

Query: 723  KILIEMLSSGCSPSSEPFLATMLQAFRDFHLSELKSKCRIFVPRGNVLIGCLDETRTLDY 902
             IL+++L  G  P+ EP+L+ MLQA  + HL++LKS+CR++VP+G +L+GCLDET TL+Y
Sbjct: 679  NILVKLLLQGYEPNLEPYLSMMLQAHYEHHLADLKSRCRMYVPKGRILVGCLDETGTLNY 738

Query: 903  GEVFIQVSKTKIKGNYDEASSFEELE--THVIEGDVVVAKNPCLHPGDIRKLKAVNVPGL 1076
            G+V+++++ TK +      S F+ ++  T ++ G VVV KNPCLHPGDIR L+AV   GL
Sbjct: 739  GQVYLRITMTKAEQEMGHQSFFQRVDEATCIVTGKVVVTKNPCLHPGDIRVLEAVYDVGL 798

Query: 1077 --VHMVDCAVFPQKGNRPHPNECSGSDLDGDLYFVSWDPMLVPPKKEPEEPMDYTGRPAI 1250
               +MVDC +FPQKG RPHPNECSG DLDGDL+F+SWD  L+PP   P  PMDY+ R   
Sbjct: 799  EEKNMVDCILFPQKGERPHPNECSGGDLDGDLFFISWDKSLIPPTTVP--PMDYSARRPR 856

Query: 1251 RLDHNVTIEEIQEYFVNYMLNDSLGIIANAHVVHADREPLKARSEKCLELARLHAKAVDF 1430
             +DH+VT+EEIQ++FV+YM+ND+LG I+ AH+VH+D EP KA S+KCLELA LH+ AVDF
Sbjct: 857  NMDHDVTLEEIQKFFVDYMINDNLGAISTAHLVHSDHEPEKAMSKKCLELADLHSMAVDF 916

Query: 1431 AKTGAPAEMPLRLIPREYPDFMEKEGKPMYESTSILGKLYRDSYDRMEEDPHVLMDSRRV 1610
            AKTGAPAE+   L P+E+PDFME+  +PMY S   LGKLYR     + ++  +++ S++ 
Sbjct: 917  AKTGAPAELSWILKPKEFPDFMERVERPMYISNGALGKLYRAIRSSVVQEQTIVVWSQQR 976

Query: 1611 CKINYDKSFEYEGFQDHLKEAELHKSWYDSKLAALMKYYGVQNEAEIISGNIRMPSRGTI 1790
             +  YD+  E +GF+  L+ AE H+  Y  K+ +LM YY    E EI++GN+R  +    
Sbjct: 977  AEEAYDRELEVQGFESFLEMAESHRDKYIEKMRSLMNYYEATTEDEILTGNLRNRAAYLQ 1036

Query: 1791 NEKKKHSDRKDKILMAVEALRTEARGWFDESCKLHHKNFALASAWYHVTYHSSYWSKG-N 1967
             + +++ D KD+IL++++ L+ EA+GWF+ SCK+  +   LASAWYHVTY+ +Y+ +  N
Sbjct: 1037 RDNRRYFDLKDRILLSLKTLQKEAKGWFESSCKVSEQQ-RLASAWYHVTYNLAYFQEDMN 1095

Query: 1968 LISFPWIRYDLILKTKRYNDTK 2033
             +SFPWI  D++L  K  N  +
Sbjct: 1096 CLSFPWIVGDILLNIKSLNSRR 1117


>gb|EXC16034.1| RNA-dependent RNA polymerase 2 [Morus notabilis]
          Length = 1115

 Score =  727 bits (1877), Expect = 0.0
 Identities = 360/682 (52%), Positives = 493/682 (72%), Gaps = 6/682 (0%)
 Frame = +3

Query: 6    RPWRTNVYERIIAILNNGIFINNKRFEFLAFSSSQLRENSVWMFSSSKYLTAEHIRKWMG 185
            +P+RT +Y+RI++IL NGI I  KR+EFLAFS+SQLR ++VWMF+S+  + AE IR+WMG
Sbjct: 434  KPYRTGIYDRILSILRNGILIGAKRYEFLAFSASQLRSSAVWMFASNDNVKAEDIREWMG 493

Query: 186  NFEDIRNVAKYAARMGQSFSSSWGTEIVKEHEVHAIEDIEVTTKGVKYCFSDGIGKISSK 365
             F  IR+V+K AARMGQ FSSS  T IV   ++  I D+EVTT G+ YCFSDGIGKISS 
Sbjct: 494  CFNKIRSVSKCAARMGQLFSSSRQTLIVPTQDLEIIPDVEVTTDGIDYCFSDGIGKISSS 553

Query: 366  MARRIAKRCGLDPTPSAFQIRYAGYKGVVAVDPTSYHKLSLRPSMLKFNSDNRTLDVLNW 545
             AR++A++CGL  TPSAFQIRY GYKGV+AV+ +S+ KLSLR SMLKF S NR L+V  W
Sbjct: 554  FARQVAQKCGLKETPSAFQIRYGGYKGVIAVNRSSFRKLSLRSSMLKFESSNRMLNVTKW 613

Query: 546  SKPLPCYLNREIIILLSTLGVPDESFQSLQRDELQKFNQMLENEENAIDILHLMSDRD-S 722
            S  +PCYLNREI+ LLS+LGV DESF +L R++L    +M  N E A+++L  ++  D S
Sbjct: 614  SGSMPCYLNREIVSLLSSLGVKDESFLALLREQLLLLGKMRTNREAALNVLENLNGSDSS 673

Query: 723  KILIEMLSSGCSPSSEPFLATMLQAFRDFHLSELKSKCRIFVPRGNVLIGCLDETRTLDY 902
             IL++ML  G  P++EP+L+ M+Q++ +  LS+LK++CRIFVP+G VLIGCLDET  L+Y
Sbjct: 674  NILVKMLLQGYEPNAEPYLSMMIQSYYENQLSDLKTRCRIFVPKGKVLIGCLDETGILEY 733

Query: 903  GEVFIQVSKTKIKGNYDEASSFEEL--ETHVIEGDVVVAKNPCLHPGDIRKLKAVNVPGL 1076
            G+V+++++  K +      S F ++  ET ++ G VVV KNPCLHPGD+R L+AV    L
Sbjct: 734  GQVYVRLTMKKAELEAGNQSFFRKVDDETSIVVGKVVVTKNPCLHPGDVRVLEAVYDAKL 793

Query: 1077 VH--MVDCAVFPQKGNRPHPNECSGSDLDGDLYFVSWDPMLVPPKKEPEEPMDYTGRPAI 1250
                +VDC VFPQKG RPHPNECSG DLDGDL+F+SWD  L+PP+     PMDY GR   
Sbjct: 794  EEEGLVDCLVFPQKGERPHPNECSGGDLDGDLFFISWDTNLIPPR--TTAPMDYIGRRPR 851

Query: 1251 RLDHNVTIEEIQEYFVNYMLNDSLGIIANAHVVHADREPLKARSEKCLELARLHAKAVDF 1430
             +DH+VT+EEIQ++FV+YM+ND+LG I+ AH++HADREP KA SE CL+LA LH+ AVDF
Sbjct: 852  IMDHDVTLEEIQKFFVDYMINDTLGGISTAHLIHADREPEKAFSENCLQLATLHSMAVDF 911

Query: 1431 AKTGAPAEMPLRLIPREYPDFMEKEGKPMYESTSILGKLYRDSYDRMEEDPHVLMDSRRV 1610
            AKTGAPAEMP  L PR+YPDFME+  +PMY S   LGKLYR + +   +    L+ S + 
Sbjct: 912  AKTGAPAEMPRALRPRDYPDFMERLDRPMYVSNGALGKLYRATVESESQGSSNLVWSEKT 971

Query: 1611 CKINYDKSFEYEGFQDHLKEAELHKSWYDSKLAALMKYYGVQNEAEIISGNIRMPSRGTI 1790
             +  YD+  E  GF++ +  AE H+  Y  K+  +M YY +++E E+++GN+R  +    
Sbjct: 972  AEAAYDRDLEVNGFEEFIALAESHRDMYIDKMNGIMNYYELESEDEVLTGNLRKRAAYLQ 1031

Query: 1791 NEKKKHSDRKDKILMAVEALRTEARGWFDESCKLHHKNFALASAWYHVTYHSSYWSKG-N 1967
             + +++ + KD+IL+AV++L+ EA+GWF+ SC+   +   +ASAWYHVTYH +Y+ K  N
Sbjct: 1032 RDNRRYFEVKDRILLAVKSLQREAKGWFEGSCEAMEQQ-KMASAWYHVTYHPNYYQKSIN 1090

Query: 1968 LISFPWIRYDLILKTKRYNDTK 2033
             +SFPWI+ D++L  K  N  +
Sbjct: 1091 CLSFPWIKGDILLNIKSINSQR 1112


>ref|XP_002311536.1| RNA-directed RNA Polymerase family protein [Populus trichocarpa]
            gi|222851356|gb|EEE88903.1| RNA-directed RNA Polymerase
            family protein [Populus trichocarpa]
          Length = 1133

 Score =  723 bits (1865), Expect = 0.0
 Identities = 377/705 (53%), Positives = 486/705 (68%), Gaps = 16/705 (2%)
 Frame = +3

Query: 15   RTNVYERIIAILNNGIFINNKRFEFLAFSSSQLRENSVWMFSSSKYLTAEHIRKWMGNFE 194
            RT +Y RI++ L NGI I +K+FEFLAFSSSQLRENS WMF+S   LTA  IR WMG+F 
Sbjct: 431  RTAIYNRILSTLQNGIVIGDKKFEFLAFSSSQLRENSCWMFASRLGLTAADIRAWMGSFH 490

Query: 195  DIRNVAKYAARMGQSFSSSWGTEIVKEHEVHAIEDIEVTTKGVKYCFSDGIGKISSKMAR 374
             IRNVA+YAAR+GQSF SS  T  V  HE+  I DIEV+  G +Y FSDGIGKIS++ AR
Sbjct: 491  KIRNVARYAARLGQSFGSSTETLSVSSHEIEIIPDIEVSRGGTRYLFSDGIGKISAEFAR 550

Query: 375  RIAKRCGLDP-TPSAFQIRYAGYKGVVAVDPTSYHKLSLRPSMLKFNSDNRTLDVLNWSK 551
            ++A +CG    TPSAFQIRYAGYKGVVAVDPTS  KLSLR SM K+ S+N  LDVL  SK
Sbjct: 551  KVAIKCGCKGFTPSAFQIRYAGYKGVVAVDPTSSKKLSLRRSMFKYESENTKLDVLAHSK 610

Query: 552  PLPCYLNREIIILLSTLGVPDESFQSLQRDELQKFNQMLENEENAIDILHLMSD-RDSKI 728
              PC+LNR++I LLSTLGVPD  F+  QR+ + + + ML +   A + L LMS   ++ I
Sbjct: 611  YQPCFLNRQLITLLSTLGVPDHHFERKQREAVDQLDAMLTDPLRAQEALELMSPGENTNI 670

Query: 729  LIEMLSSGCSPSSEPFLATMLQAFRDFHLSELKSKCRIFVPRGNVLIGCLDETRTLDYGE 908
            L EML  G  P +EPFL+ MLQ FR   L EL++K RIF+P G  ++GCLDETRTL++G+
Sbjct: 671  LKEMLLCGYQPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLEHGQ 730

Query: 909  VFIQVSKTKIKGNYDEASSFEEL---ETHVIEGDVVVAKNPCLHPGDIRKLKAVNVPGLV 1079
            VF++ S ++ +  YD +  F E    + ++I+G VVVAKNPCLHPGD+R LKAV+VP L 
Sbjct: 731  VFVKFSGSRFRNLYDSSDMFSERGRGQCYLIKGSVVVAKNPCLHPGDLRILKAVDVPALH 790

Query: 1080 HMVDCAVFPQKGNRPHPNECSGSDLDGDLYFVSWDPMLVPPKKEPEEPMDYTGRPAIRLD 1259
            HMVDC VFPQKG RPHPNECSGSDLDGD+YFV WDP L+P ++    PMDYT  P ++LD
Sbjct: 791  HMVDCVVFPQKGPRPHPNECSGSDLDGDIYFVCWDPELIPSQQI--SPMDYTPEPPLQLD 848

Query: 1260 HNVTIEEIQEYFVNYMLNDSLGIIANAHVVHADREPLKARSEKCLELARLHAKAVDFAKT 1439
            H+VTIEE++EYF NY++NDSLG+IANAH  HAD+E LKA SE C+ELAR  + AVDF KT
Sbjct: 849  HDVTIEEVEEYFTNYIVNDSLGVIANAHTAHADKESLKAMSEPCVELARKFSIAVDFPKT 908

Query: 1440 GAPAEMPLRLIPREYPDFMEKEGKPMYESTSILGKLYRDSYDRMEEDPHVLMDSRRVCKI 1619
            G PAE+P  L  REYPDFMEK  KP YES +++GKL+R+  D       +   +  V + 
Sbjct: 909  GVPAEIPSNLRAREYPDFMEKPDKPSYESRNVIGKLFREVKDIAPRTSSIRSFTSDVARQ 968

Query: 1620 NYDKSFEYEGFQDHLKEAELHKSWYDSKLAALMKYYGVQNEAEIISGNIRMPSRGTINEK 1799
             YD   E +GF+D++ +A  +KS YD KL  LM+YYG++ EAE++SG+    S+    ++
Sbjct: 969  CYDPDMEVDGFEDYIDDAFYYKSNYDYKLGNLMEYYGIKTEAELLSGSFMKMSKSFTKKR 1028

Query: 1800 KKHSDRKDKILMAVEALRTEARGWFDESCKLHHKNF----ALASAWYHVTYHSSYW---- 1955
                   + I MAV +L+ EAR WF+E             A ASAWYHVTYH +YW    
Sbjct: 1029 D-----AEAIGMAVRSLKKEARSWFNEKGSGLDSQADDVDAKASAWYHVTYHHNYWGCYN 1083

Query: 1956 ---SKGNLISFPWIRYDLILKTKRYNDTKIQK*KELVSFQKSKKR 2081
               ++ + +SFPW  YD +++ KR N  +I++   L S ++   R
Sbjct: 1084 EGMNRDHFLSFPWCVYDKLIQIKRRNSARIRRSLILPSVERQFSR 1128


>ref|XP_006476748.1| PREDICTED: RNA-dependent RNA polymerase 2-like [Citrus sinensis]
          Length = 1131

 Score =  719 bits (1855), Expect = 0.0
 Identities = 362/682 (53%), Positives = 488/682 (71%), Gaps = 6/682 (0%)
 Frame = +3

Query: 6    RPWRTNVYERIIAILNNGIFINNKRFEFLAFSSSQLRENSVWMFSSSKYLTAEHIRKWMG 185
            +P+RT +Y RI+ IL +GI I +K +EFLAFS+SQLR NSVWMF+S+  ++AE +R+WMG
Sbjct: 452  KPYRTKIYSRILTILQDGIVIGDKHYEFLAFSASQLRNNSVWMFASNDEVSAEDVREWMG 511

Query: 186  NFEDIRNVAKYAARMGQSFSSSWGTEIVKEHEVHAIEDIEVTTKGVKYCFSDGIGKISSK 365
             F  I +V+K AARMGQ FSSS  T +V   +V  I D+EVT+ G  YCFSDGIGKIS  
Sbjct: 512  CFNKIHSVSKCAARMGQLFSSSKQTLVVPVQDVEMIPDVEVTSDGNTYCFSDGIGKISLS 571

Query: 366  MARRIAKRCGLDPTPSAFQIRYAGYKGVVAVDPTSYHKLSLRPSMLKFNSDNRTLDVLNW 545
             AR++A++CGL  TPSAFQIRY GYKGV+AVD  S+ KLSLR SMLKF S NR L+V  W
Sbjct: 572  FARQVAQKCGLSHTPSAFQIRYGGYKGVIAVDRNSFRKLSLRRSMLKFESRNRMLNVTKW 631

Query: 546  SKPLPCYLNREIIILLSTLGVPDESFQSLQRDELQKFNQMLENEENAIDILHLMSDRDSK 725
            S+ +PC+LNREII LLSTLGV D+ F+++Q+ +L    +ML N E A+D+L  ++  DSK
Sbjct: 632  SESMPCFLNREIISLLSTLGVKDDVFEAMQQQQLILLGKMLINREAALDVLQKLNGVDSK 691

Query: 726  -ILIEMLSSGCSPSSEPFLATMLQAFRDFHLSELKSKCRIFVPRGNVLIGCLDETRTLDY 902
             IL++ML  G  P+ EP+L+ ML +  +  LS+LKS+CRI+VP+G +LIGC DET  L+Y
Sbjct: 692  NILVKMLLQGYEPNVEPYLSMMLLSHHENQLSDLKSRCRIYVPKGRLLIGCFDETGILNY 751

Query: 903  GEVFIQVSKTKIKGNYDEASSFEELE--THVIEGDVVVAKNPCLHPGDIRKLKAVNVPGL 1076
            G+VF++V+ T+ +    + S F  ++  T +++G V+V KNPCLHPGD+R L+AV    L
Sbjct: 752  GQVFVRVTMTREELESKDQSFFHRVDDKTSIVKGKVLVTKNPCLHPGDVRVLEAVYEMKL 811

Query: 1077 VH--MVDCAVFPQKGNRPHPNECSGSDLDGDLYFVSWDPMLVPPKKEPEEPMDYTGRPAI 1250
                 VDC +FPQKG RPHPNECSG DLDGD++F+SWD  L+P + EP  PMDYTGR + 
Sbjct: 812  EEKDYVDCIIFPQKGERPHPNECSGGDLDGDIFFISWDNDLIPCETEP--PMDYTGRRSR 869

Query: 1251 RLDHNVTIEEIQEYFVNYMLNDSLGIIANAHVVHADREPLKARSEKCLELARLHAKAVDF 1430
             +DH+VT+EEI ++FV+YM+ND+LG I+ AH+VHADR+P KARS KCL LA LH+ AVDF
Sbjct: 870  IMDHDVTLEEIHKFFVDYMINDTLGAISTAHLVHADRDPDKARSSKCLHLATLHSMAVDF 929

Query: 1431 AKTGAPAEMPLRLIPREYPDFMEKEGKPMYESTSILGKLYRDSYDRMEEDPHVLMDSRRV 1610
            AKTGAPAEMPL L P+E+PDFME+E KP Y S  +LGKLYR + D + +     + S ++
Sbjct: 930  AKTGAPAEMPLALKPKEFPDFMEREDKPRYISFGVLGKLYRATLDSIMQIRSNAIWSEKI 989

Query: 1611 CKINYDKSFEYEGFQDHLKEAELHKSWYDSKLAALMKYYGVQNEAEIISGNIRMPSRGTI 1790
             + +YD   E +GF+  L  AE HK  Y+ ++ ALM YYG   E EI++GN+R  +    
Sbjct: 990  AEASYDHDLEVDGFEAFLGVAESHKEMYEEEMNALMNYYGASTEDEILTGNLRNRASYLQ 1049

Query: 1791 NEKKKHSDRKDKILMAVEALRTEARGWFDESCKLHHKNFALASAWYHVTYHSSYW-SKGN 1967
             + +++ D KD+IL++ + L+ EA+ WF  SCK  +++  LASAWYHVTY  SY   +  
Sbjct: 1050 RDNRRYGDMKDRILLSAKNLQNEAKEWFGSSCK-ENEHPQLASAWYHVTYSPSYCKERMA 1108

Query: 1968 LISFPWIRYDLILKTKRYNDTK 2033
            L+SFPWI  D++L  K  N  K
Sbjct: 1109 LLSFPWIVGDILLNIKSVNSRK 1130


>gb|ABV24845.1| RNA-dependent RNA polymerase [Nicotiana glutinosa]
            gi|209420668|gb|ACI46982.1| RNA-dependent RNA polymerase
            [Nicotiana glutinosa]
          Length = 1117

 Score =  716 bits (1849), Expect = 0.0
 Identities = 370/680 (54%), Positives = 475/680 (69%), Gaps = 12/680 (1%)
 Frame = +3

Query: 15   RTNVYERIIAILNNGIFINNKRFEFLAFSSSQLRENSVWMFSSSKYLTAEHIRKWMGNFE 194
            RT++Y RI++ L NG  I +K+FEFLAFSSSQLR+NSVWMF+S   LTA  IR WMG F+
Sbjct: 421  RTDIYLRILSTLRNGFVIGDKKFEFLAFSSSQLRDNSVWMFASRPGLTANDIRTWMGGFQ 480

Query: 195  DIRNVAKYAARMGQSFSSSWGTEIVKEHEVHAIEDIEVTTKGVKYCFSDGIGKISSKMAR 374
             IRNVAKYAAR+GQSF SS  T  V  HEV  I D+  +  G  Y FSDGIGKIS+  AR
Sbjct: 481  QIRNVAKYAARLGQSFGSSRETLSVGRHEVEVIPDVVCSLHGTNYIFSDGIGKISADFAR 540

Query: 375  RIAKRCGLDPTPSAFQIRYAGYKGVVAVDPTSYHKLSLRPSMLKFNSDNRTLDVLNWSKP 554
            R+A +CGL  TPS FQIRY GYKGVVAVDP S  KLSLR SMLK+ S+N  LDVL WSK 
Sbjct: 541  RVAVKCGLQYTPSCFQIRYGGYKGVVAVDPYSSMKLSLRNSMLKYESNNIKLDVLGWSKY 600

Query: 555  LPCYLNREIIILLSTLGVPDESFQSLQRDELQKFNQMLENEENAIDILHLMS-DRDSKIL 731
             PCYLNR+++ LLSTLGV D+ F+  Q + + + + +L +   A + L LMS   ++ IL
Sbjct: 601  QPCYLNRQLVTLLSTLGVKDDVFEQKQNEAVDQLDAILHDTLKAQEALELMSPGENTNIL 660

Query: 732  IEMLSSGCSPSSEPFLATMLQAFRDFHLSELKSKCRIFVPRGNVLIGCLDETRTLDYGEV 911
             EML+ G  P +EPFL+ MLQ FR   L +L+++ RIF+P G  ++GCLDE+RTL+YG+V
Sbjct: 661  KEMLNCGYMPDAEPFLSMMLQTFRASKLLDLRTRSRIFIPNGRTMMGCLDESRTLEYGQV 720

Query: 912  FIQVSKTKIKGNYDEASSFEELET----HVIEGDVVVAKNPCLHPGDIRKLKAVNVPGLV 1079
            F+Q + T  +  Y+E+  F +  +     ++EG+VVVAKNPCLHPGDIR L+AV+VP L 
Sbjct: 721  FVQFTGTGRRQFYEESHPFNDSGSTNCDFILEGNVVVAKNPCLHPGDIRVLRAVDVPALH 780

Query: 1080 HMVDCAVFPQKGNRPHPNECSGSDLDGDLYFVSWDPMLVPPKKEPEEPMDYTGRPAIRLD 1259
            HMVDC VFPQKG RPHPNECSGSDLDGD+YFV WDP LVPP++   +PMDYT  P+ +LD
Sbjct: 781  HMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVCWDPDLVPPRQ--FQPMDYTPAPSTQLD 838

Query: 1260 HNVTIEEIQEYFVNYMLNDSLGIIANAHVVHADREPLKARSEKCLELARLHAKAVDFAKT 1439
            H+VTIEE++EYF NY++NDSLGIIANAHVV ADREP  A S+ C +LA+L + AVDF KT
Sbjct: 839  HDVTIEEVEEYFTNYIVNDSLGIIANAHVVFADREPDMAMSDPCKQLAQLFSIAVDFPKT 898

Query: 1440 GAPAEMPLRLIPREYPDFMEKEGKPMYESTSILGKLYRDSYDRMEEDPHVLMDSRRVCKI 1619
            G PAE+P +L P+EYPDFMEK  KP Y S  ++GKL++   D+  +   +   +  V + 
Sbjct: 899  GVPAEIPSQLRPKEYPDFMEKPDKPTYHSEKVIGKLFQKVKDKTPQASSIANFTMDVARK 958

Query: 1620 NYDKSFEYEGFQDHLKEAELHKSWYDSKLAALMKYYGVQNEAEIISGNIRMPSRGTINEK 1799
            +YD      GF+D++ EA  +KS YD+KL  LM YYG++ EAEI+SG I   S+ T + +
Sbjct: 959  SYDGDMIVNGFEDYIDEAFYYKSEYDNKLGNLMDYYGIKTEAEILSGGIMKASK-TFDRR 1017

Query: 1800 KKHSDRKDKILMAVEALRTEARGWFDESCKLHHKNFALASAWYHVTYHSSYW-------S 1958
            K      D I +AV +LR EAR WF     +     A ASAWYHVTYH +YW        
Sbjct: 1018 KD----ADAIGVAVRSLRKEARTWFKRRSDIDDM-LAKASAWYHVTYHHTYWGFYNEGLK 1072

Query: 1959 KGNLISFPWIRYDLILKTKR 2018
            + + ISFPW  YD +++ K+
Sbjct: 1073 RDHFISFPWCIYDQLIQIKK 1092


>ref|XP_004498236.1| PREDICTED: RNA-dependent RNA polymerase 1-like isoform X1 [Cicer
            arietinum]
          Length = 1126

 Score =  716 bits (1847), Expect = 0.0
 Identities = 382/704 (54%), Positives = 484/704 (68%), Gaps = 14/704 (1%)
 Frame = +3

Query: 15   RTNVYERIIAILNNGIFINNKRFEFLAFSSSQLRENSVWMFS-SSKYLTAEHIRKWMGNF 191
            RT VY RI++IL NGI I +K+FEFLAFSSSQLRENS+WMF+ ++  LTA+ IR WMG+F
Sbjct: 435  RTEVYNRILSILRNGIVIGDKKFEFLAFSSSQLRENSLWMFAPTATGLTAQFIRAWMGDF 494

Query: 192  EDIRNVAKYAARMGQSFSSSWGTEIVKEHEVHAIEDIEVTTKGVKYCFSDGIGKISSKMA 371
              IRNVAKYAAR+GQSF SS  T  V  +E+  I D +V    ++Y FSDGIGKIS + A
Sbjct: 495  SQIRNVAKYAARLGQSFGSSTETLSVNRNEIEIIPDAQVKHDTIEYVFSDGIGKISLEFA 554

Query: 372  RRIAKRCGLDPTPSAFQIRYAGYKGVVAVDPTSYHKLSLRPSMLKFNSDNRTLDVLNWSK 551
            RR+AK+CG D TPSAFQIRY GYKGVVAVDPTS  KLSLR SM K++SDN  LDVL  SK
Sbjct: 555  RRVAKKCGYDSTPSAFQIRYGGYKGVVAVDPTSSVKLSLRKSMYKYDSDNTKLDVLACSK 614

Query: 552  PLPCYLNREIIILLSTLGVPDESFQSLQRDELQKFNQMLENEENAIDILHLMSDRD-SKI 728
              PCYLNR++I LLSTL V D  F+  Q++ + + N +L N   A ++L LMS  + + I
Sbjct: 615  YQPCYLNRQLITLLSTLKVEDSVFEKKQKEAVNQLNTILTNSLKAQEVLDLMSTGEITNI 674

Query: 729  LIEMLSSGCSPSSEPFLATMLQAFRDFHLSELKSKCRIFVPRGNVLIGCLDETRTLDYGE 908
            L EML  G  P+ EPFL+ MLQ FR   L EL+ K RIF+P+G  ++G LDETRTL+YGE
Sbjct: 675  LKEMLFCGYKPNVEPFLSMMLQTFRASKLLELRQKTRIFIPKGRAMMGVLDETRTLEYGE 734

Query: 909  VFIQVSKTKIKG-NYDEASSFEELETHVIEGDVVVAKNPCLHPGDIRKLKAVNVPGLVHM 1085
            VF+Q S  +I   +Y  A+S       V+ G VVVAKNPCLHPGD+R LKAV+VP L HM
Sbjct: 735  VFVQYSNNRISSLSYGSANSL------VVTGKVVVAKNPCLHPGDVRVLKAVDVPALHHM 788

Query: 1086 VDCAVFPQKGNRPHPNECSGSDLDGDLYFVSWDPMLVPPKKEPEEPMDYTGRPAIRLDHN 1265
            VDC VFPQKG+RPHPNECSGSDLDGD+YFV WDP L+PP  E  EPM+Y     I L H+
Sbjct: 789  VDCVVFPQKGHRPHPNECSGSDLDGDIYFVCWDPELIPP--ETTEPMEYASVQPIVLYHD 846

Query: 1266 VTIEEIQEYFVNYMLNDSLGIIANAHVVHADREPLKARSEKCLELARLHAKAVDFAKTGA 1445
            V IEE++EYF NY+LNDSLGIIANAH+V AD+EP KA++E C+ELA+L + AVDF KTG 
Sbjct: 847  VEIEEVEEYFTNYILNDSLGIIANAHIVFADKEPAKAKAEPCIELAKLFSIAVDFPKTGI 906

Query: 1446 PAEMPLRLIPREYPDFMEKEGKPMYESTSILGKLYRDSYDRMEEDPHVLMDSRRVCKINY 1625
            PA +P  L  +EYPDFMEK  K  Y+S +++GKL+R+       D  +   +  V K +Y
Sbjct: 907  PAVIPPHLFAKEYPDFMEKPDKTTYKSNNVIGKLFREIQGIPSRDGSITSFTLEVAKKSY 966

Query: 1626 DKSFEYEGFQDHLKEAELHKSWYDSKLAALMKYYGVQNEAEIISGNIRMPSRGTINEKKK 1805
            D   E++GF D++ +A  HK+ YD KL  LM YYG++NE+EI+SGNI   S+ + N+++ 
Sbjct: 967  DPDMEFDGFMDYVDDAFYHKTNYDYKLGNLMDYYGIKNESEILSGNIMRMSK-SFNKRRD 1025

Query: 1806 HSDRKDKILMAVEALRTEARGWFDESCKLHHKN----FALASAWYHVTYHSSYWSKGN-- 1967
                 D I MAV +LR EAR WF++            +A ASAWY+VTYH SYW   N  
Sbjct: 1026 ----GDAINMAVRSLRKEARSWFNDDATGVDSGSVDAYAKASAWYYVTYHHSYWGSYNEG 1081

Query: 1968 -----LISFPWIRYDLILKTKRYNDTKIQK*KELVSFQKSKKRR 2084
                  +SFPW  Y L+++ K+    K +     VS ++S  RR
Sbjct: 1082 MKRDHFLSFPWCVYHLLVQIKK---EKARMRMHAVSLEQSFSRR 1122


>emb|CAA09896.1| RNA-directed RNA polymerase [Petunia x hybrida]
          Length = 775

 Score =  716 bits (1847), Expect = 0.0
 Identities = 369/673 (54%), Positives = 475/673 (70%), Gaps = 12/673 (1%)
 Frame = +3

Query: 15   RTNVYERIIAILNNGIFINNKRFEFLAFSSSQLRENSVWMFSSSKYLTAEHIRKWMGNFE 194
            RT++YERI++ L NG+ I  K+FEFLAFSSSQLR+NSVWMF+S   LTA  IR WMG+F+
Sbjct: 113  RTDIYERILSTLQNGLVIGAKKFEFLAFSSSQLRDNSVWMFASRPGLTAYDIRTWMGDFQ 172

Query: 195  DIRNVAKYAARMGQSFSSSWGTEIVKEHEVHAIEDIEVTTKGVKYCFSDGIGKISSKMAR 374
             IRNVAKYAAR+GQSF SS  T  V  HE+  I D+EV   G  Y FSDGIGKIS+  A 
Sbjct: 173  QIRNVAKYAARLGQSFGSSRETLSVGRHEIKYIPDVEV--HGTNYVFSDGIGKISADFAH 230

Query: 375  RIAKRCGLDPTPSAFQIRYAGYKGVVAVDPTSYHKLSLRPSMLKFNSDNRTLDVLNWSKP 554
            R+AK+CGL  TPSAFQIRY GYKGVVAVDP S  KLSLR SMLK+ S+N  LDVL WSK 
Sbjct: 231  RVAKKCGLQHTPSAFQIRYGGYKGVVAVDPYSPMKLSLRKSMLKYESNNTKLDVLGWSKY 290

Query: 555  LPCYLNREIIILLSTLGVPDESFQSLQRDELQKFNQMLENEENAIDILHLMSD-RDSKIL 731
             PCYLNR+++ L+STLGV DE F+  Q + + + + +L +   A + L LMS   ++ IL
Sbjct: 291  QPCYLNRQLVTLMSTLGVKDEVFKRKQNEAVAQLDAILHDSLKAQEALDLMSPGENTNIL 350

Query: 732  IEMLSSGCSPSSEPFLATMLQAFRDFHLSELKSKCRIFVPRGNVLIGCLDETRTLDYGEV 911
             EML+ G  P +EPFL+ MLQ FR   L +L+++ RIF+P+G  ++GCLDE+RTL+YG+V
Sbjct: 351  KEMLNCGYLPDAEPFLSMMLQTFRASKLLDLRTRTRIFIPKGRSMMGCLDESRTLEYGQV 410

Query: 912  FIQVSKTKIKGNYDEASSFEELET----HVIEGDVVVAKNPCLHPGDIRKLKAVNVPGLV 1079
            F+Q +    +  Y+E+  F +  +     +++G+VVVAKNPCLHPGDIR LKAV+VP L 
Sbjct: 411  FVQFTGAGGRQFYEESHHFNDSGSANYNFILKGNVVVAKNPCLHPGDIRVLKAVDVPALH 470

Query: 1080 HMVDCAVFPQKGNRPHPNECSGSDLDGDLYFVSWDPMLVPPKKEPEEPMDYTGRPAIRLD 1259
            HMVDC VFPQKG RPHPNECSGSDLDGD+YFV WDP L+PP++   +PMDYT  P+I+LD
Sbjct: 471  HMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVCWDPDLIPPRQV--QPMDYTPAPSIQLD 528

Query: 1260 HNVTIEEIQEYFVNYMLNDSLGIIANAHVVHADREPLKARSEKCLELARLHAKAVDFAKT 1439
            H+VTIEE++EYF NYM+ND LG+IANAHVV ADREP  A S+ C+ELA+L + AVDF KT
Sbjct: 529  HDVTIEEVEEYFTNYMVNDGLGVIANAHVVFADREPNMAMSDPCIELAQLFSIAVDFPKT 588

Query: 1440 GAPAEMPLRLIPREYPDFMEKEGKPMYESTSILGKLYRDSYDRMEEDPHVLMDSRRVCKI 1619
            G PAE+P +L P+EYPDFMEK  K  Y S  ++GKL+R+  D+  +   +   +R V + 
Sbjct: 589  GVPAEIPSQLRPKEYPDFMEKPDKTTYHSEKVIGKLFREVKDKTTQASSITTFTRDVARR 648

Query: 1620 NYDKSFEYEGFQDHLKEAELHKSWYDSKLAALMKYYGVQNEAEIISGNIRMPSRGTINEK 1799
            +YD   E +GF+D++ EA  +KS YD KL  LM YYG++ EAE +SG I   S+ T + +
Sbjct: 649  SYDTDLEVDGFEDYIDEAFDYKSEYDKKLGNLMDYYGIKTEAETLSGGIMKASK-TFDRR 707

Query: 1800 KKHSDRKDKILMAVEALRTEARGWFDESCKLHHKNFALASAWYHVTYHSSYW-------S 1958
            +      + I +AV +LR EAR WF     +     A ASAWYHV YH +YW        
Sbjct: 708  RD----AEAIGVAVRSLRKEARTWFKRRSDIDDL-LAKASAWYHVAYHPTYWGCYNEGLK 762

Query: 1959 KGNLISFPWIRYD 1997
            + + ISFPW  YD
Sbjct: 763  RDHFISFPWCVYD 775


>ref|XP_006469265.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Citrus sinensis]
          Length = 1132

 Score =  714 bits (1843), Expect = 0.0
 Identities = 370/684 (54%), Positives = 478/684 (69%), Gaps = 16/684 (2%)
 Frame = +3

Query: 15   RTNVYERIIAILNNGIFINNKRFEFLAFSSSQLRENSVWMFSSSKYLTAEHIRKWMGNFE 194
            RT +Y RI++ L NGI I +++FEFLAFSSSQLRE+S WMF+S   LTA  IR+WMGNF 
Sbjct: 435  RTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYGLTAAEIREWMGNFR 494

Query: 195  DIRNVAKYAARMGQSFSSSWGTEIVKEHEVHAIEDIEVTTKGVKYCFSDGIGKISSKMAR 374
            +IRNVAKYAAR+GQSFSSS  T  V   E+  I D+++     KY FSDGIGK+S++ AR
Sbjct: 495  EIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFAR 554

Query: 375  RIAKRCGL-DPTPSAFQIRYAGYKGVVAVDPTSYHKLSLRPSMLKFNSDNRTLDVLNWSK 551
            ++A +CGL D  PSAFQIRY GYKGVVA DPTS  KLSLR SM K+ S+   LDVL WSK
Sbjct: 555  KVASKCGLKDNPPSAFQIRYGGYKGVVAADPTSSKKLSLRDSMRKYESELTKLDVLAWSK 614

Query: 552  PLPCYLNREIIILLSTLGVPDESFQSLQRDELQKFNQMLENEENAIDILHLMSD-RDSKI 728
              PC+LNR++I LLSTLG+ DE F+  QR+ +++ + +L +   A + L LMS   ++ I
Sbjct: 615  YQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEALELMSPGENTNI 674

Query: 729  LIEMLSSGCSPSSEPFLATMLQAFRDFHLSELKSKCRIFVPRGNVLIGCLDETRTLDYGE 908
            L E+L  G  P +EPFL+ MLQ FR   L EL++K RIF+P G  ++GCLDETRTL+YG+
Sbjct: 675  LKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQ 734

Query: 909  VFIQVSKTKIKGNYDEASSFEELETH---VIEGDVVVAKNPCLHPGDIRKLKAVNVPGLV 1079
            VF+Q+S    +  + E+S F    +    +++G VVVAKNPCLHPGD+R LKAVNVP L 
Sbjct: 735  VFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPALH 794

Query: 1080 HMVDCAVFPQKGNRPHPNECSGSDLDGDLYFVSWDPMLVPPKKEPEEPMDYTGRPAIRLD 1259
            HMVDC VFPQKG RPHPNECSGSDLDGD+YFV WD  L+PP+++P  PMDYT   +++LD
Sbjct: 795  HMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELIPPQQDP--PMDYTPAQSMQLD 852

Query: 1260 HNVTIEEIQEYFVNYMLNDSLGIIANAHVVHADREPLKARSEKCLELARLHAKAVDFAKT 1439
            H+V IE+++EYF NY++NDSLGIIANAH V ADREP KARSE CL+LA   + AVDF KT
Sbjct: 853  HDVQIEDVEEYFTNYIVNDSLGIIANAHTVFADREPHKARSEPCLQLAEKFSIAVDFPKT 912

Query: 1440 GAPAEMPLRLIPREYPDFMEKEGKPMYESTSILGKLYRDSYDRMEEDPHVLMDSRRVCKI 1619
            G PAE+P  L  +EYPDFMEK  KP YES +++GKL+R   D       + + ++ V + 
Sbjct: 913  GVPAEIPPHLYVKEYPDFMEKPDKPTYESQNVIGKLFRAVKDIAPHTSCIRLFTKEVARR 972

Query: 1620 NYDKSFEYEGFQDHLKEAELHKSWYDSKLAALMKYYGVQNEAEIISGNIRMPSRGTINEK 1799
            +YD   E +GF+DH+ +A  HK  YD KL  LM YYG++ EAEI++G+I   S       
Sbjct: 973  SYDPDMEVDGFEDHIDDAIYHKGNYDYKLGNLMDYYGIKTEAEILTGSIMKMS------- 1025

Query: 1800 KKHSDRKD--KILMAVEALRTEARGWFDESCKLHHKN--FALASAWYHVTYHSSYW---- 1955
            K  + R+D   I MAV ALR EAR WF E      ++  +A ASAWYHVTYH  YW    
Sbjct: 1026 KSFTKRRDAEAIGMAVRALRKEARAWFKEKSGSDTEDDAYAKASAWYHVTYHPDYWGCYN 1085

Query: 1956 ---SKGNLISFPWIRYDLILKTKR 2018
               ++ + +SFPW  YD +++ K+
Sbjct: 1086 HGMNRDHFLSFPWCVYDRLVEIKK 1109


>gb|ADU04140.1| hypothetical protein [Gossypium hirsutum]
          Length = 1147

 Score =  712 bits (1839), Expect = 0.0
 Identities = 356/679 (52%), Positives = 488/679 (71%), Gaps = 6/679 (0%)
 Frame = +3

Query: 6    RPWRTNVYERIIAILNNGIFINNKRFEFLAFSSSQLRENSVWMFSSSKYLTAEHIRKWMG 185
            RP++T +Y+RI++IL NGI I +KRF+FLAFS+SQLR NSVWMF+S+  + AE IR+WMG
Sbjct: 437  RPFKTKIYDRILSILQNGIVIGDKRFKFLAFSASQLRSNSVWMFASNDEVKAEDIREWMG 496

Query: 186  NFEDIRNVAKYAARMGQSFSSSWGTEIVKEHEVHAIEDIEVTTKGVKYCFSDGIGKISSK 365
             F+ IR+++K A+RMGQ FSSS  T +V   +V  I+DIEV T G+ YCFSDGIGKIS  
Sbjct: 497  CFKKIRSISKCASRMGQLFSSSMPTLVVPVQDVEIIDDIEVKTDGINYCFSDGIGKISLP 556

Query: 366  MARRIAKRCGLDPTPSAFQIRYAGYKGVVAVDPTSYHKLSLRPSMLKFNSDNRTLDVLNW 545
             AR++A++CGL+  PSAFQIRY GYKGVVAVD  S+ K+SLR SMLKF S  R L+V  W
Sbjct: 557  FARQVAEKCGLNHIPSAFQIRYGGYKGVVAVDRNSFWKMSLRDSMLKFESKVRMLNVTKW 616

Query: 546  SKPLPCYLNREIIILLSTLGVPDESFQSLQRDELQKFNQMLENEENAIDILHLMSDRDSK 725
            S+ +PC+LNREI+ L STLG+ DE F+ +Q ++L    +ML N E A+D L  +   +SK
Sbjct: 617  SESMPCFLNREIVTLFSTLGIKDEVFERMQEEQLCLLGKMLTNREAALDTLQSLGGVNSK 676

Query: 726  -ILIEMLSSGCSPSSEPFLATMLQAFRDFHLSELKSKCRIFVPRGNVLIGCLDETRTLDY 902
             IL+EML     P+ +P+L+ MLQA  +  LS+LKS+CRIFVP+G +LIGCLDET TL+Y
Sbjct: 677  NILVEMLQFD-EPNVQPYLSMMLQAHYENLLSDLKSRCRIFVPKGRILIGCLDETGTLNY 735

Query: 903  GEVFIQVSKTKIKGNYDEASSFEEL--ETHVIEGDVVVAKNPCLHPGDIRKLKAVNVPGL 1076
            G+V++ +   K +    + S F ++  ET ++ G VVV KNPCLHPGD+R L+AV  P L
Sbjct: 736  GQVYLCIKMKKAELECADQSYFRKVDEETAIVIGKVVVTKNPCLHPGDVRVLEAVYEPQL 795

Query: 1077 VH--MVDCAVFPQKGNRPHPNECSGSDLDGDLYFVSWDPMLVPPKKEPEEPMDYTGRPAI 1250
                +VDC VFP+KG RPHPNECSG DLDGD +F+SWD  L+P + EP  PMDYTGR   
Sbjct: 796  EEKGLVDCLVFPEKGERPHPNECSGGDLDGDQFFISWDKDLIPCQTEP--PMDYTGRRPR 853

Query: 1251 RLDHNVTIEEIQEYFVNYMLNDSLGIIANAHVVHADREPLKARSEKCLELARLHAKAVDF 1430
             +DH VT+EEIQ++FV+YM+ND+LG I+ AH+VHADREP KARSE CL LA LH+ AVDF
Sbjct: 854  IMDHEVTLEEIQKFFVDYMINDTLGAISTAHLVHADREPYKARSENCLALATLHSMAVDF 913

Query: 1431 AKTGAPAEMPLRLIPREYPDFMEKEGKPMYESTSILGKLYRDSYDRMEEDPHVLMDSRRV 1610
            AKTGAPAEMP  L PRE+PDFM++  KPMY S+ +LGKLYR + +   +     + ++ +
Sbjct: 914  AKTGAPAEMPRALKPREFPDFMQRGNKPMYTSSGVLGKLYRATINSTVQIRSKFVWTKEM 973

Query: 1611 CKINYDKSFEYEGFQDHLKEAELHKSWYDSKLAALMKYYGVQNEAEIISGNIRMPSRGTI 1790
             ++ YD   E  GF+  +  AE HK  Y+ +++ LM YY V+ E EI++GN+   ++  +
Sbjct: 974  AELAYDHDLEVNGFESLISVAETHKEMYEERMSLLMSYYDVEYEDEILTGNMYNKAQFLL 1033

Query: 1791 NEKKKHSDRKDKILMAVEALRTEARGWFDESCKLHHKNFALASAWYHVTYHSSYW-SKGN 1967
             + +++ + K++I+++V+ L+ EA+ WF  SC    ++  LASAWY+VTYH +Y+  + N
Sbjct: 1034 RDNRRYGEMKERIVLSVKDLQREAKEWFKSSCSKADEHQKLASAWYYVTYHPNYFEERMN 1093

Query: 1968 LISFPWIRYDLILKTKRYN 2024
             +SFPWI  D++L+ K  N
Sbjct: 1094 SLSFPWIVGDILLRIKSRN 1112


>ref|XP_002280099.1| PREDICTED: RNA-dependent RNA polymerase 2 [Vitis vinifera]
            gi|297733815|emb|CBI15062.3| unnamed protein product
            [Vitis vinifera]
          Length = 1127

 Score =  712 bits (1839), Expect = 0.0
 Identities = 363/687 (52%), Positives = 488/687 (71%), Gaps = 6/687 (0%)
 Frame = +3

Query: 9    PWRTNVYERIIAILNNGIFINNKRFEFLAFSSSQLRENSVWMFSSSKYLTAEHIRKWMGN 188
            P+RT +Y RI++IL  GI I  KRF+FLAFS+SQLR NSVWMF+S+  +  + IR+WMG 
Sbjct: 437  PFRTEIYHRILSILREGIVIGAKRFQFLAFSASQLRSNSVWMFASNDKVRVDDIREWMGC 496

Query: 189  FEDIRNVAKYAARMGQSFSSSWGTEIVKEHEVHAIEDIEVTTKGVKYCFSDGIGKISSKM 368
            F+ IR+V+K AARMGQ FSSS  T  V   +V  I DIEVT+ G  YCFSDGIGKIS   
Sbjct: 497  FKKIRSVSKCAARMGQLFSSSVQTLPVPVQDVEVIPDIEVTSDGFGYCFSDGIGKISLSF 556

Query: 369  ARRIAKRCGLDPTPSAFQIRYAGYKGVVAVDPTSYHKLSLRPSMLKFNSDNRTLDVLNWS 548
            A+++A++CGL  TPSAFQIRY GYKGV+AVD  S+ KLSLR SMLKF S NR L+V  WS
Sbjct: 557  AKQVAQKCGLHQTPSAFQIRYGGYKGVIAVDRNSFRKLSLRSSMLKFESQNRMLNVTKWS 616

Query: 549  KPLPCYLNREIIILLSTLGVPDESFQSLQRDELQKFNQMLENEENAIDILHLMSDRDSK- 725
            +  PCYLNREI+ LLSTLGV DE+F++L  +++   ++ML N + A+D+L  M   D+K 
Sbjct: 617  ESTPCYLNREIVSLLSTLGVEDENFEALLNEQMHLLDKMLTNRQAALDVLESMGGIDNKN 676

Query: 726  ILIEMLSSGCSPSSEPFLATMLQAFRDFHLSELKSKCRIFVPRGNVLIGCLDETRTLDYG 905
            IL +ML  G  P+ EP+L+ MLQA+R+  LS+++++CRIFVP+  VLIGCLDET  L+YG
Sbjct: 677  ILAKMLLQGYEPNVEPYLSMMLQAYRESQLSDIRTRCRIFVPKARVLIGCLDETGILNYG 736

Query: 906  EVFIQVSKTKIKGNYDEASSFEELE--THVIEGDVVVAKNPCLHPGDIRKLKAVNVPGLV 1079
            +V+++V+ TK +      S F++++  T V+ G V+V KNPCLHPGDIR L AV    L 
Sbjct: 737  QVYVRVTMTKAEHKCRNQSFFQKVDDTTSVVIGKVIVTKNPCLHPGDIRVLDAVYEVELE 796

Query: 1080 H--MVDCAVFPQKGNRPHPNECSGSDLDGDLYFVSWDPMLVPPKKEPEEPMDYTGRPAIR 1253
               +VDC +FPQKG RPHPNECSG DLDGD +F+ WD  L+P   + E PMDYT R    
Sbjct: 797  EKGLVDCILFPQKGERPHPNECSGGDLDGDQFFICWDEGLIP--SQTEAPMDYTSRRPRI 854

Query: 1254 LDHNVTIEEIQEYFVNYMLNDSLGIIANAHVVHADREPLKARSEKCLELARLHAKAVDFA 1433
            +DH+VT+EEIQ++FV+YM+ND+LG+I+ AH+VHADREP KARS+KCLELA LH+ AVDFA
Sbjct: 855  MDHDVTLEEIQKFFVDYMINDTLGVISTAHLVHADREPEKARSKKCLELATLHSMAVDFA 914

Query: 1434 KTGAPAEMPLRLIPREYPDFMEKEGKPMYESTSILGKLYRDSYDRMEEDPHVLMDSRRVC 1613
            KTGAPAEMP  L P+E+PDFME+  KPMY S   LGKLYR +      +    + S  + 
Sbjct: 915  KTGAPAEMPRVLKPKEFPDFMERVDKPMYISNGALGKLYRATIASRVNEKSSFVWSGTIP 974

Query: 1614 KINYDKSFEYEGFQDHLKEAELHKSWYDSKLAALMKYYGVQNEAEIISGNIRMPSRGTIN 1793
               YD   E +GF+  L+ A+LHK  Y  K+A LM +YG ++E E+++GN+R        
Sbjct: 975  GAAYDHDLEVDGFETFLEIAKLHKEMYAEKMATLMNFYGAESEDEMLTGNLRNKLMYLQR 1034

Query: 1794 EKKKHSDRKDKILMAVEALRTEARGWFDESCKLHHKNFALASAWYHVTYHSSYWSK-GNL 1970
            + ++ ++ KD+IL++V++L+ EA+ W   SCK  H++  +ASAWYHVTYHS++ S+  N 
Sbjct: 1035 DNRRFTEMKDRILISVKSLQKEAKEWLYGSCK-PHQHQKMASAWYHVTYHSTFSSQTPNF 1093

Query: 1971 ISFPWIRYDLILKTKRYNDTKIQK*KE 2051
            +SFPWI  +++L  K  N  K +  K+
Sbjct: 1094 LSFPWIVGEVLLVIKSANSRKAETSKD 1120


>gb|ABQ45352.1| RNA-dependent RNA polymerase [Gossypium hirsutum]
          Length = 1110

 Score =  712 bits (1837), Expect = 0.0
 Identities = 372/681 (54%), Positives = 473/681 (69%), Gaps = 13/681 (1%)
 Frame = +3

Query: 15   RTNVYERIIAILNNGIFINNKRFEFLAFSSSQLRENSVWMFSSSKYLTAEHIRKWMGNFE 194
            RT +Y+RI++ L NGI I NKRFEFLAFSSSQLRENS WMF+S K LTA  IR WMGNF 
Sbjct: 424  RTGIYKRILSTLRNGIVIGNKRFEFLAFSSSQLRENSAWMFASRKGLTAADIRSWMGNFS 483

Query: 195  DIRNVAKYAARMGQSFSSSWGTEIVKEHEVHAIEDIEVTTKGVKYCFSDGIGKISSKMAR 374
             IRNVAKYAAR+GQSFSSS  T  V + E++ I DIE+   G+KY FSDGIGKIS++ A+
Sbjct: 484  KIRNVAKYAARLGQSFSSSTETLSVSKDEINLIPDIEIMKDGIKYVFSDGIGKISAEFAK 543

Query: 375  RIAKRCGLDP-TPSAFQIRYAGYKGVVAVDPTSYHKLSLRPSMLKFNSDNRTLDVLNWSK 551
            ++A +C L   TPSAFQIR  G+KGVVA+DPTS  KLSLR SM K+ S+N  LDVL WSK
Sbjct: 544  KVAAKCRLKGCTPSAFQIRIGGFKGVVAIDPTSSWKLSLRKSMEKYESENTKLDVLAWSK 603

Query: 552  PLPCYLNREIIILLSTLGVPDESFQSLQRDELQKFNQMLENEENAIDILHLMSD-RDSKI 728
              PC+LNR++I LLSTLGVPD +F+  QR+ + + N +L +   A + L LMS   ++ I
Sbjct: 604  YQPCFLNRQLITLLSTLGVPDRAFEKKQREVVDQLNALLTDPLEAQEALELMSPGENTNI 663

Query: 729  LIEMLSSGCSPSSEPFLATMLQAFRDFHLSELKSKCRIFVPRGNVLIGCLDETRTLDYGE 908
            L EML  G  P +EPFL+ ML+ FR   L EL++K RIFV +G  ++GCLDETRTL+YG+
Sbjct: 664  LKEMLLCGYKPDAEPFLSMMLETFRASKLLELRTKARIFVQKGRSMMGCLDETRTLNYGQ 723

Query: 909  VFIQVSKTKIKGNYDEASSFEELETHVIEGDVVVAKNPCLHPGDIRKLKAVNVPGLVHMV 1088
            VF+Q S ++ +  +            +++G V+VAKNPCLHPGD+R L+AVNVP L HMV
Sbjct: 724  VFVQFSGSRSERRF------------IVQGKVIVAKNPCLHPGDVRVLRAVNVPDLHHMV 771

Query: 1089 DCAVFPQKGNRPHPNECSGSDLDGDLYFVSWDPMLVPPKKEPEEPMDYTGRPAIRLDHNV 1268
            DC VFPQKG RPHPNECSGSDLDGD+YFV WDP L+P K+   +PMDY+     +LDH V
Sbjct: 772  DCVVFPQKGTRPHPNECSGSDLDGDVYFVCWDPELIPYKQI--DPMDYSPASTTKLDHEV 829

Query: 1269 TIEEIQEYFVNYMLNDSLGIIANAHVVHADREPLKARSEKCLELARLHAKAVDFAKTGAP 1448
            TIEEI+EYF NY++NDSLGII+NAH   ADREP KA S  CLELA+L + AVDF KTG P
Sbjct: 830  TIEEIEEYFTNYIVNDSLGIISNAHTAFADREPDKAMSRPCLELAKLFSIAVDFPKTGVP 889

Query: 1449 AEMPLRLIPREYPDFMEKEGKPMYESTSILGKLYRDSYDRMEEDPHVLMDSRRVCKINYD 1628
            AE+P  L  +EYPDFMEK  KP Y+S +++GKL+R+  +    +  +   +R   +  YD
Sbjct: 890  AEIPQELRVKEYPDFMEKPDKPSYQSHNVIGKLFREVKNLAPNECSIKFLTREKMQRFYD 949

Query: 1629 KSFEYEGFQDHLKEAELHKSWYDSKLAALMKYYGVQNEAEIISGNIRMPSRGTINEKKKH 1808
               E EGF+D++ +A  HKS YD KL  LM YYGV+ EAEI+ G I   SR    ++   
Sbjct: 950  PDMEVEGFEDYIDDAFFHKSKYDYKLGNLMDYYGVKTEAEILGGGIMKMSRSFTKKRD-- 1007

Query: 1809 SDRKDKILMAVEALRTEARGWFDE-SCKLHHK---NFALASAWYHVTYHSSYWSKGN--- 1967
                + I MAV +LR EAR WF+E   +L  +    +A ASAWY+VTYH SYW + N   
Sbjct: 1008 ---AEAISMAVRSLRKEARSWFNEKGSELDEEIDDAYAKASAWYYVTYHPSYWGQYNEGM 1064

Query: 1968 ----LISFPWIRYDLILKTKR 2018
                 +SFPW  YD +++ K+
Sbjct: 1065 NRDHFLSFPWCVYDKLIQIKK 1085


>gb|ADU04145.1| hypothetical protein [Gossypium hirsutum]
          Length = 1147

 Score =  711 bits (1835), Expect = 0.0
 Identities = 357/679 (52%), Positives = 486/679 (71%), Gaps = 6/679 (0%)
 Frame = +3

Query: 6    RPWRTNVYERIIAILNNGIFINNKRFEFLAFSSSQLRENSVWMFSSSKYLTAEHIRKWMG 185
            RP++T +Y+RI+ +L NGI I +KRFEFLAFS+SQLR NSVWMF+S+  + AE IR+WMG
Sbjct: 437  RPFKTKIYDRILYVLQNGIVIGDKRFEFLAFSASQLRSNSVWMFASNDEVKAEDIREWMG 496

Query: 186  NFEDIRNVAKYAARMGQSFSSSWGTEIVKEHEVHAIEDIEVTTKGVKYCFSDGIGKISSK 365
             F+ IR+++K A+RMGQ FSSS  T +V   +V  I+DIEV T G+ YCFSDGIGKIS  
Sbjct: 497  CFKKIRSISKCASRMGQLFSSSMPTLVVPVQDVEIIDDIEVKTDGINYCFSDGIGKISLP 556

Query: 366  MARRIAKRCGLDPTPSAFQIRYAGYKGVVAVDPTSYHKLSLRPSMLKFNSDNRTLDVLNW 545
             AR++A++CGL+  PSAFQIRY GYKGVVAVD  S+ K+SLR SMLKF S  R L+V  W
Sbjct: 557  FARQVAEKCGLNHIPSAFQIRYGGYKGVVAVDRNSFWKMSLRDSMLKFESKVRMLNVTKW 616

Query: 546  SKPLPCYLNREIIILLSTLGVPDESFQSLQRDELQKFNQMLENEENAIDILHLMSDRDSK 725
            S+ +PC+LNREI+ L STLG+ DE F+ +Q ++L    +ML N E A+D L  +   +SK
Sbjct: 617  SESMPCFLNREIVTLFSTLGIKDEVFERMQEEQLCLLGKMLTNREAALDTLQSLGGVNSK 676

Query: 726  -ILIEMLSSGCSPSSEPFLATMLQAFRDFHLSELKSKCRIFVPRGNVLIGCLDETRTLDY 902
             IL+EML     P+ +P+L+ MLQA  +  LS+LKS+CRIFVP+G +LIGCLDET TL+Y
Sbjct: 677  NILVEMLQF-YEPNVQPYLSMMLQAHYENLLSDLKSRCRIFVPKGRILIGCLDETGTLNY 735

Query: 903  GEVFIQVSKTKIKGNYDEASSFEEL--ETHVIEGDVVVAKNPCLHPGDIRKLKAVNVPGL 1076
            G+V++ +   K +    + S F ++  ET ++ G VVV KNPCLHPGD+R L+AV  P L
Sbjct: 736  GQVYLCIKMKKAELECADQSYFRKVDEETAIVIGKVVVTKNPCLHPGDVRVLEAVYEPQL 795

Query: 1077 VH--MVDCAVFPQKGNRPHPNECSGSDLDGDLYFVSWDPMLVPPKKEPEEPMDYTGRPAI 1250
                +VDC VFPQKG RPHPNECSG DLDGD +F+SWD  L+P + EP  PMDYTGR   
Sbjct: 796  EEKGLVDCLVFPQKGERPHPNECSGGDLDGDQFFISWDKDLIPCQTEP--PMDYTGRRPR 853

Query: 1251 RLDHNVTIEEIQEYFVNYMLNDSLGIIANAHVVHADREPLKARSEKCLELARLHAKAVDF 1430
             +DH VT+EEIQ++FV+YM+ND+LG I+ AH+VHADREP KA SE CL LA LH+ AVDF
Sbjct: 854  IMDHEVTLEEIQKFFVDYMINDTLGAISTAHLVHADREPDKACSENCLALATLHSMAVDF 913

Query: 1431 AKTGAPAEMPLRLIPREYPDFMEKEGKPMYESTSILGKLYRDSYDRMEEDPHVLMDSRRV 1610
            AKTGAPAEMP  L PRE+PDFM++  KPMY S+ +LGKLYR + +   +     + ++ +
Sbjct: 914  AKTGAPAEMPRALKPREFPDFMQRGNKPMYTSSGVLGKLYRATINSTVQTRSKFVWTKEM 973

Query: 1611 CKINYDKSFEYEGFQDHLKEAELHKSWYDSKLAALMKYYGVQNEAEIISGNIRMPSRGTI 1790
             ++ YD   E  GF+  +  AE HK  Y+ +++ LM YY V+ E EI++GNI   ++  +
Sbjct: 974  AELVYDHDLEVNGFESLISVAETHKEMYEERMSLLMSYYDVEYEDEILTGNIYNKAQFLL 1033

Query: 1791 NEKKKHSDRKDKILMAVEALRTEARGWFDESCKLHHKNFALASAWYHVTYHSSYW-SKGN 1967
             + +++ + K++I+++V+ L+ EA+ WF  SC    ++  LASAWY+VTYH +Y+  + N
Sbjct: 1034 RDNRRYGEMKERIVLSVKDLQREAKEWFKSSCSKADEHQKLASAWYYVTYHPNYFQERMN 1093

Query: 1968 LISFPWIRYDLILKTKRYN 2024
             +SFPWI  D++L+ K  N
Sbjct: 1094 SLSFPWIVGDILLRVKSRN 1112


>gb|EMJ12511.1| hypothetical protein PRUPE_ppa000513mg [Prunus persica]
          Length = 1118

 Score =  711 bits (1834), Expect = 0.0
 Identities = 358/682 (52%), Positives = 485/682 (71%), Gaps = 6/682 (0%)
 Frame = +3

Query: 6    RPWRTNVYERIIAILNNGIFINNKRFEFLAFSSSQLRENSVWMFSSSKYLTAEHIRKWMG 185
            +P RT +Y R+++IL +GI I  KRFEFLAFS+SQLR +SVWMFSS+  + AE IR+WMG
Sbjct: 437  KPHRTGIYHRMLSILRDGIVIGEKRFEFLAFSASQLRSSSVWMFSSNDNVKAEDIREWMG 496

Query: 186  NFEDIRNVAKYAARMGQSFSSSWGTEIVKEHEVHAIEDIEVTTKGVKYCFSDGIGKISSK 365
             F  IR+++K AARMGQ FSSS  T +V   +V  I D+E ++ GV YCFSDGIGKIS  
Sbjct: 497  CFSKIRSISKCAARMGQLFSSSTQTLVVPAQDVEIIPDVETSSDGVTYCFSDGIGKISLS 556

Query: 366  MARRIAKRCGLDPTPSAFQIRYAGYKGVVAVDPTSYHKLSLRPSMLKFNSDNRTLDVLNW 545
             AR++A++CGLD TPSAFQIRY GYKGV+AVD  S+ KLSLR SMLKF S NR L+V  W
Sbjct: 557  FARKVAQKCGLDQTPSAFQIRYGGYKGVIAVDCRSFRKLSLRSSMLKFESKNRMLNVTKW 616

Query: 546  SKPLPCYLNREIIILLSTLGVPDESFQSLQRDELQKFNQMLENEENAIDILHLMSDRDSK 725
            S  +PCYLNREII LLSTLGV DE+F++LQ ++L+   +M      A+++   ++  DSK
Sbjct: 617  SDAMPCYLNREIISLLSTLGVKDETFEALQEEQLRLLGKMRTERGAALNVFERLNGADSK 676

Query: 726  -ILIEMLSSGCSPSSEPFLATMLQAFRDFHLSELKSKCRIFVPRGNVLIGCLDETRTLDY 902
              L++ML  G  P++EP+L+ MLQA+ + HLS+LKS+CRIFVP+G VL+GCLDET  LDY
Sbjct: 677  NTLVKMLLHGYEPNAEPYLSMMLQAYYENHLSDLKSRCRIFVPKGRVLVGCLDETGNLDY 736

Query: 903  GEVFIQVSKTKIKGNYDEASSFEELE--THVIEGDVVVAKNPCLHPGDIRKLKAVN--VP 1070
            G+V+++++ TK +    + S F++++  T V+ G VVV KNPCLHPGD+R L AV   V 
Sbjct: 737  GQVYVRITMTKAEQEMGDQSFFQKVDETTLVVTGKVVVTKNPCLHPGDVRVLDAVYDVVL 796

Query: 1071 GLVHMVDCAVFPQKGNRPHPNECSGSDLDGDLYFVSWDPMLVPPKKEPEEPMDYTGRPAI 1250
               +MVDC +FPQKG RPHPNECSG DLDGDL+F+SWD  LVP    P  PMDY+ R   
Sbjct: 797  EEKNMVDCLIFPQKGERPHPNECSGGDLDGDLFFISWDKDLVPSHTVP--PMDYSARRPR 854

Query: 1251 RLDHNVTIEEIQEYFVNYMLNDSLGIIANAHVVHADREPLKARSEKCLELARLHAKAVDF 1430
             +DH VT+EEIQ++FV+YM+ND+LG I+ AH+VHAD EP KA + KCL+LA LH+ AVDF
Sbjct: 855  IMDHTVTLEEIQKFFVDYMINDNLGAISTAHLVHADHEPDKALNPKCLQLADLHSMAVDF 914

Query: 1431 AKTGAPAEMPLRLIPREYPDFMEKEGKPMYESTSILGKLYRDSYDRMEEDPHVLMDSRRV 1610
            AKTGAPAEM   L P+E+PDFME+  KPMY S   LGKLYR     + ++   L+ S ++
Sbjct: 915  AKTGAPAEMSRTLKPKEFPDFMERVDKPMYISNGALGKLYRAVVGSVLQEKTNLVWSEQI 974

Query: 1611 CKINYDKSFEYEGFQDHLKEAELHKSWYDSKLAALMKYYGVQNEAEIISGNIRMPSRGTI 1790
             +  YD+  E +G +  L+ A+ H+  Y  K+  +M YYG   E EI++GN+R  +    
Sbjct: 975  AEAAYDQDLEVDGLESVLEVAKGHRDMYIEKMRTMMNYYGAVTEDEILTGNLRNRAAYLQ 1034

Query: 1791 NEKKKHSDRKDKILMAVEALRTEARGWFDESCKLHHKNFALASAWYHVTYHSSYWSKG-N 1967
             + +++ D KD+I ++++ L+ EA+G F+ SC +  ++  +ASAWYHVTYH SY+ +  N
Sbjct: 1035 RDNRRYGDMKDRISLSLKNLQKEAKGLFESSCPV-SEHQRMASAWYHVTYHPSYFQQDMN 1093

Query: 1968 LISFPWIRYDLILKTKRYNDTK 2033
             +SFPWI  D++L  K  N+ +
Sbjct: 1094 CLSFPWIVGDILLNIKALNNPR 1115


>emb|CAA09697.1| RNA-directed RNA polymerase [Nicotiana tabacum]
          Length = 1116

 Score =  709 bits (1830), Expect = 0.0
 Identities = 364/680 (53%), Positives = 472/680 (69%), Gaps = 12/680 (1%)
 Frame = +3

Query: 15   RTNVYERIIAILNNGIFINNKRFEFLAFSSSQLRENSVWMFSSSKYLTAEHIRKWMGNFE 194
            RT++YERI++ L NG  I +KRFEFLAFSSSQLR+NSVWMF+S   LTA  IR WMG+F 
Sbjct: 420  RTDIYERILSTLRNGFIIGDKRFEFLAFSSSQLRDNSVWMFASRPGLTANDIRTWMGDFR 479

Query: 195  DIRNVAKYAARMGQSFSSSWGTEIVKEHEVHAIEDIEVTTKGVKYCFSDGIGKISSKMAR 374
             IRNVAKYAAR+GQSF SS  T  V  HEV  I D+  +  G  Y FSDGIGKIS+  A 
Sbjct: 480  QIRNVAKYAARLGQSFGSSRETLSVGRHEVEVIPDVACSLHGTNYIFSDGIGKISADFAH 539

Query: 375  RIAKRCGLDPTPSAFQIRYAGYKGVVAVDPTSYHKLSLRPSMLKFNSDNRTLDVLNWSKP 554
            R+  +CGL  TPS+FQIRY GYKGVVAVDP S  KLSLR SMLK+ S+N  LDVL WSK 
Sbjct: 540  RVTIKCGLQYTPSSFQIRYGGYKGVVAVDPYSSMKLSLRKSMLKYESNNIKLDVLGWSKY 599

Query: 555  LPCYLNREIIILLSTLGVPDESFQSLQRDELQKFNQMLENEENAIDILHLMS-DRDSKIL 731
             PCYLNR+++ LLSTLGV D+  +  Q + + + + +L +   A + L LMS   ++ IL
Sbjct: 600  QPCYLNRQLVTLLSTLGVIDDVLEQKQNEAVDQLDAILHDSLKAQEALELMSPGENTNIL 659

Query: 732  IEMLSSGCSPSSEPFLATMLQAFRDFHLSELKSKCRIFVPRGNVLIGCLDETRTLDYGEV 911
             EML+ G  P +EPFL+ MLQ FR   L +L+++ RIF+P G  ++GCLDE+RTL+YG+V
Sbjct: 660  KEMLNCGYMPDAEPFLSMMLQTFRASKLLDLRTRTRIFIPNGRTMMGCLDESRTLEYGQV 719

Query: 912  FIQVSKTKIKGNYDEASSFEELET----HVIEGDVVVAKNPCLHPGDIRKLKAVNVPGLV 1079
            F+Q S    +  ++E+  F +  +     +++G+VVVAKNPCLHPGDIR L+AV+VP L 
Sbjct: 720  FVQFSGAGRRQFFEESHPFNDSGSANCDFILKGNVVVAKNPCLHPGDIRVLRAVDVPALH 779

Query: 1080 HMVDCAVFPQKGNRPHPNECSGSDLDGDLYFVSWDPMLVPPKKEPEEPMDYTGRPAIRLD 1259
            HMVDC VFPQKG RPHPNECSGSDLDGD+YFV WDP L+PP++   + MDYT  P  +LD
Sbjct: 780  HMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVCWDPDLIPPRQ--VQSMDYTPAPTTQLD 837

Query: 1260 HNVTIEEIQEYFVNYMLNDSLGIIANAHVVHADREPLKARSEKCLELARLHAKAVDFAKT 1439
            H+VTIEE++EYF NY++NDSLGIIANAHVV ADREP  A S+ C +LA+L + AVDF KT
Sbjct: 838  HDVTIEEVEEYFTNYIINDSLGIIANAHVVFADREPDMAMSDPCKQLAQLFSIAVDFPKT 897

Query: 1440 GAPAEMPLRLIPREYPDFMEKEGKPMYESTSILGKLYRDSYDRMEEDPHVLMDSRRVCKI 1619
            G PAE+P +L P+EYPDFMEK  KP Y S  ++GKL++   ++  +   +   +R V + 
Sbjct: 898  GVPAEIPSQLRPKEYPDFMEKPDKPTYPSEKVIGKLFQKVKNKTPQASSIATFTRDVARK 957

Query: 1620 NYDKSFEYEGFQDHLKEAELHKSWYDSKLAALMKYYGVQNEAEIISGNIRMPSRGTINEK 1799
            +YD     +GF+D++ EA  +KS YD+KL  LM YYG++ EAEI+SG I   S+ T + +
Sbjct: 958  SYDSDMIVDGFEDYIDEAFYYKSEYDNKLGNLMDYYGIKTEAEILSGGIMKASK-TFDRR 1016

Query: 1800 KKHSDRKDKILMAVEALRTEARGWFDESCKLHHKNFALASAWYHVTYHSSYW-------S 1958
            K      + I +AV  LR EAR WF     +     A ASAWYHVTYH +YW        
Sbjct: 1017 KD----AEAIGVAVRCLRKEARAWFKRRSDIDDM-LAKASAWYHVTYHHTYWGLYNEGLK 1071

Query: 1959 KGNLISFPWIRYDLILKTKR 2018
            + + ISFPW  YD +++ K+
Sbjct: 1072 RDHFISFPWCVYDQLIQIKK 1091


>gb|ABE01124.1| RNA-dependent RNA polymerase [Gossypium hirsutum]
          Length = 1110

 Score =  709 bits (1829), Expect = 0.0
 Identities = 372/681 (54%), Positives = 473/681 (69%), Gaps = 13/681 (1%)
 Frame = +3

Query: 15   RTNVYERIIAILNNGIFINNKRFEFLAFSSSQLRENSVWMFSSSKYLTAEHIRKWMGNFE 194
            RT +Y+RI++ L NGI I NKRFEFLAFSSSQLRENS WMF+S K LTA  IR WMGNF 
Sbjct: 424  RTGIYKRILSTLRNGIVIGNKRFEFLAFSSSQLRENSAWMFASRKGLTAADIRSWMGNFS 483

Query: 195  DIRNVAKYAARMGQSFSSSWGTEIVKEHEVHAIEDIEVTTKGVKYCFSDGIGKISSKMAR 374
             IRNVAKYAAR+GQSFSSS  T  V + E++ I DIE+   G+KY F DGIGKIS++ A+
Sbjct: 484  KIRNVAKYAARLGQSFSSSTETLSVSKDEINLIPDIEIMKDGIKYVFPDGIGKISAEFAK 543

Query: 375  RIAKRCGLDP-TPSAFQIRYAGYKGVVAVDPTSYHKLSLRPSMLKFNSDNRTLDVLNWSK 551
            ++A +C L   TPSAFQIR  G+KGVVA+DPTS  KLSLR SM K+ S+N  LDVL WSK
Sbjct: 544  KVAAKCRLKGCTPSAFQIRIGGFKGVVAIDPTSSWKLSLRKSMEKYESENTKLDVLAWSK 603

Query: 552  PLPCYLNREIIILLSTLGVPDESFQSLQRDELQKFNQMLENEENAIDILHLMSD-RDSKI 728
              PC+LNR++I LLSTLGVPD +F+  QR+ + + N +L +   A + L LMS   ++ I
Sbjct: 604  YQPCFLNRQLITLLSTLGVPDYAFEKKQREVVDQLNALLTDPLEAQEALELMSPGENTNI 663

Query: 729  LIEMLSSGCSPSSEPFLATMLQAFRDFHLSELKSKCRIFVPRGNVLIGCLDETRTLDYGE 908
            L EML  G  P +EPFL+ ML+ FR   L EL++K RIFV +G  ++GCLDETRTL+YG+
Sbjct: 664  LKEMLLCGYKPDAEPFLSMMLETFRASKLLELRTKARIFVQKGRSMMGCLDETRTLNYGQ 723

Query: 909  VFIQVSKTKIKGNYDEASSFEELETHVIEGDVVVAKNPCLHPGDIRKLKAVNVPGLVHMV 1088
            VF+Q S ++ +  +            +++G V+VAKNPCLHPGD+R L+AVNVP L HMV
Sbjct: 724  VFVQFSGSRSERRF------------IVQGKVIVAKNPCLHPGDVRVLRAVNVPDLHHMV 771

Query: 1089 DCAVFPQKGNRPHPNECSGSDLDGDLYFVSWDPMLVPPKKEPEEPMDYTGRPAIRLDHNV 1268
            DC VFPQKG RPHPNECSGSDLDGD+YFV WDP L+P K+   +PMDY+     +LDH V
Sbjct: 772  DCVVFPQKGTRPHPNECSGSDLDGDVYFVCWDPELIPYKQI--DPMDYSPASTTKLDHEV 829

Query: 1269 TIEEIQEYFVNYMLNDSLGIIANAHVVHADREPLKARSEKCLELARLHAKAVDFAKTGAP 1448
            TIEEI+EYF NY++NDSLGII+NAH   ADREP KA S  CLELA+L + AVDF KTG P
Sbjct: 830  TIEEIEEYFTNYIVNDSLGIISNAHTAFADREPGKAMSRPCLELAKLFSIAVDFPKTGVP 889

Query: 1449 AEMPLRLIPREYPDFMEKEGKPMYESTSILGKLYRDSYDRMEEDPHVLMDSRRVCKINYD 1628
            AE+P  L  +E+PDFMEK  KP Y+S +++GKL+R+  +    +  + + +R   K  YD
Sbjct: 890  AEIPQELRVKEFPDFMEKPDKPSYQSYNVIGKLFREVKNLAPNECSIKLLTREKMKRFYD 949

Query: 1629 KSFEYEGFQDHLKEAELHKSWYDSKLAALMKYYGVQNEAEIISGNIRMPSRGTINEKKKH 1808
               E EGF D++ +A  +KS YD KL  LM YYGV+ EAEI+SG I   SR    ++   
Sbjct: 950  PDMEVEGFVDYIDDAFFYKSKYDYKLGNLMDYYGVKTEAEILSGGIMKMSRSFTKKRDAE 1009

Query: 1809 SDRKDKILMAVEALRTEARGWFDE-SCKLHHK---NFALASAWYHVTYHSSYWSKGN--- 1967
            S     I MAV +LR EAR WF+E   +L  +    +A ASAWY+VTYH SYW + N   
Sbjct: 1010 S-----ISMAVRSLRKEARSWFNEKGSELDEEIDDAYAKASAWYYVTYHHSYWGQYNEGM 1064

Query: 1968 ----LISFPWIRYDLILKTKR 2018
                 +SFPW  YD +++ K+
Sbjct: 1065 NRDHFLSFPWCVYDKLIQIKK 1085


>ref|XP_004978058.1| PREDICTED: probable RNA-dependent RNA polymerase 2-like [Setaria
            italica]
          Length = 1130

 Score =  707 bits (1826), Expect = 0.0
 Identities = 367/676 (54%), Positives = 474/676 (70%), Gaps = 7/676 (1%)
 Frame = +3

Query: 9    PWRTNVYERIIAILNNGIFINNKRFEFLAFSSSQLRENSVWMFSSSKYLTAEHIRKWMGN 188
            P +T++Y RI++IL  G  I  K++EFLAFS+SQLR NSVWMF+S+  L+AE IR+WMG+
Sbjct: 441  PLKTDLYHRILSILKEGFCIGPKKYEFLAFSASQLRGNSVWMFASNDSLSAESIRRWMGH 500

Query: 189  FEDIRNVAKYAARMGQSFSSSWGTEIVKEHEVHAIEDIEVTTKGVKYCFSDGIGKISSKM 368
            F DIR+V+K AARMGQ FSSS  T  V  ++V  I DIEVTT G KY FSDGIGKISS+ 
Sbjct: 501  FNDIRSVSKCAARMGQLFSSSRQTFEVSSYDVEVIPDIEVTTDGNKYIFSDGIGKISSRF 560

Query: 369  ARRIAKRCGLDPT--PSAFQIRYAGYKGVVAVDPTSYHKLSLRPSMLKFNSDNRTLDVLN 542
            AR+IAK  GLDP   PSAFQIRY GYKGV+AVDPTS++ LSLRPSM KF S +  L++ N
Sbjct: 561  ARQIAKTIGLDPNNPPSAFQIRYGGYKGVIAVDPTSFYNLSLRPSMKKFESKSTMLNITN 620

Query: 543  WSKPLPCYLNREIIILLSTLGVPDESFQSLQRDELQKFNQMLENEENAIDILHLMSDRDS 722
            WSK  PCY+NREII LLSTLG+ DE F S+Q+D++ + ++ML N+E A+ +L  +   D+
Sbjct: 621  WSKSQPCYVNREIISLLSTLGIKDEIFLSMQQDDMHESDEMLTNKEVALSVLGKIGGADT 680

Query: 723  KILIEMLSSGCSPSSEPFLATMLQAFRDFHLSELKSKCRIFVPRGNVLIGCLDETRTLDY 902
            KI  EML  G  PSSEP+L  +L+A R   L++++++C+I V +G VLIGCLDET  LDY
Sbjct: 681  KIAAEMLLQGYEPSSEPYLLMILKAHRANRLTDIRTRCKIHVQKGRVLIGCLDETSKLDY 740

Query: 903  GEVFIQVSKTKIKGNYDEASSF--EELETHVIEGDVVVAKNPCLHPGDIRKLKAVNVPGL 1076
            G+V+I+++K + +  Y E   F  ++ +T VI G V ++KNPCLHPGD+R L+A+  PGL
Sbjct: 741  GQVYIRITKNRKEQKYSEQPFFCNDDGKTAVIVGKVAISKNPCLHPGDVRVLEAIYDPGL 800

Query: 1077 --VHMVDCAVFPQKGNRPHPNECSGSDLDGDLYFVSWDPMLVPPKKEPEEPMDYTG-RPA 1247
                +VDC VFPQ+G+RPHPNECSG DLDGDL+F++WD  L+P K   + PMDYT  RP 
Sbjct: 801  DARGLVDCVVFPQRGDRPHPNECSGGDLDGDLFFITWDDKLIPEK--VDAPMDYTATRPR 858

Query: 1248 IRLDHNVTIEEIQEYFVNYMLNDSLGIIANAHVVHADREPLKARSEKCLELARLHAKAVD 1427
            I +DH VT+EEIQ++FV+YM+ND+LG+I+ AH++HADR PLKARS +CL+LA LH+ AVD
Sbjct: 859  I-MDHVVTLEEIQKHFVSYMINDALGVISTAHLIHADRNPLKARSPECLQLAALHSMAVD 917

Query: 1428 FAKTGAPAEMPLRLIPREYPDFMEKEGKPMYESTSILGKLYRDSYDRMEEDPHVLMDSRR 1607
            FAKTGAPAEMP  L PRE+PDFME+  KPMY S  +LGKLYR +  R  E+   L+    
Sbjct: 918  FAKTGAPAEMPRALRPREFPDFMERWEKPMYVSNGVLGKLYRSAL-RHAENAEALLPEGP 976

Query: 1608 VCKINYDKSFEYEGFQDHLKEAELHKSWYDSKLAALMKYYGVQNEAEIISGNIRMPSRGT 1787
             C   YD   E  GF D L  AE H   Y  KL  LM YY  + E EI++GNIR      
Sbjct: 977  ACS-EYDPDLECPGFHDFLDAAEEHYEAYAEKLGTLMTYYSAEREDEILTGNIRNKLVYL 1035

Query: 1788 INEKKKHSDRKDKILMAVEALRTEARGWFDESCKLHHKNFALASAWYHVTYHSSYWSKGN 1967
              + K++ + KD+I+ AV+AL  E RGW     +       LASAWYHVTYH     +  
Sbjct: 1036 RRDNKRYFEMKDRIIAAVDALHEEVRGWL--RARREEDASKLASAWYHVTYHPCRRGEKR 1093

Query: 1968 LISFPWIRYDLILKTK 2015
              SFPW+  D +L  K
Sbjct: 1094 FWSFPWLACDTLLAVK 1109