BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ephedra25_contig00011231
         (3606 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_001755844.1| predicted protein [Physcomitrella patens] gi...  1755   0.0  
ref|XP_002977127.1| hypothetical protein SELMODRAFT_443461 [Sela...  1729   0.0  
ref|XP_002992124.1| hypothetical protein SELMODRAFT_430375 [Sela...  1720   0.0  
ref|XP_006494572.1| PREDICTED: DNA-directed RNA polymerase III s...  1643   0.0  
ref|XP_006432385.1| hypothetical protein CICLE_v10000078mg [Citr...  1642   0.0  
ref|XP_002265454.1| PREDICTED: DNA-directed RNA polymerase III s...  1642   0.0  
gb|EOY19609.1| DNA-directed RNA polymerase isoform 1 [Theobroma ...  1622   0.0  
ref|XP_004249732.1| PREDICTED: DNA-directed RNA polymerase III s...  1617   0.0  
ref|XP_006362214.1| PREDICTED: DNA-directed RNA polymerase III s...  1616   0.0  
ref|XP_004141655.1| PREDICTED: DNA-directed RNA polymerase III s...  1612   0.0  
gb|EOY19611.1| DNA-directed RNA polymerase isoform 3 [Theobroma ...  1608   0.0  
ref|XP_002525541.1| DNA-directed RNA polymerase III subunit, put...  1596   0.0  
ref|XP_006583557.1| PREDICTED: DNA-directed RNA polymerase III s...  1593   0.0  
gb|ESW24958.1| hypothetical protein PHAVU_004G175000g [Phaseolus...  1593   0.0  
ref|NP_001050323.1| Os03g0403100 [Oryza sativa Japonica Group] g...  1575   0.0  
gb|AAP03366.1| putative RNA polymerase III [Oryza sativa Japonic...  1575   0.0  
ref|XP_006656544.1| PREDICTED: DNA-directed RNA polymerase III s...  1572   0.0  
ref|XP_004510587.1| PREDICTED: DNA-directed RNA polymerase III s...  1571   0.0  
ref|XP_003516394.1| PREDICTED: DNA-directed RNA polymerase III s...  1568   0.0  
ref|XP_004951189.1| PREDICTED: DNA-directed RNA polymerase III s...  1568   0.0  

>ref|XP_001755844.1| predicted protein [Physcomitrella patens] gi|162693163|gb|EDQ79517.1|
            predicted protein [Physcomitrella patens]
          Length = 1135

 Score = 1755 bits (4546), Expect = 0.0
 Identities = 885/1145 (77%), Positives = 981/1145 (85%), Gaps = 9/1145 (0%)
 Frame = -3

Query: 3544 YENERNLAAPVKTAVDKFQLLPAFLKVRGLVKQHIDSFNFFVNHEIKKIIHAKANEKVIS 3365
            + ++  L APVKTAVDKFQLLP+FLKVRGLVKQHIDSFN+F+N EIKKIIHA+ NEKV S
Sbjct: 9    HSHKEGLEAPVKTAVDKFQLLPSFLKVRGLVKQHIDSFNYFINCEIKKIIHAQGNEKVTS 68

Query: 3364 ENNPNFYLKYLDIRVDRPCLEEDLLHVETTPHQCRLRDMTYAAPIKVDVEYTRGNEIVVR 3185
            + + NFYLKYLDI V  PC+E+D ++   TP QCRLRDMTY+API VDVEYTRG E+V  
Sbjct: 69   DVDANFYLKYLDIFVGEPCVEQDYIYEPITPQQCRLRDMTYSAPISVDVEYTRGKEVV-- 126

Query: 3184 KGKGAITIGRLPIMLRSCQCILTGKSETELAKLGECPLDPGGYFVVKGTEKVILIQEQLS 3005
               G+I IGR+PIMLRS +CIL GK+E +LAK+GECPLDPGGYFVVKGTEKVILIQEQLS
Sbjct: 127  ---GSINIGRMPIMLRSSRCILAGKNEAQLAKVGECPLDPGGYFVVKGTEKVILIQEQLS 183

Query: 3004 KNRILIDTDSKGXXXXXXXXXTHEKKSKTIIIVKHEIFYLKLNTFTEDVPIVIVVKAMGI 2825
            KNRI+I TDS G         THE+KSKT ++VKHE  YL+ NTF +D+PIV+V++AMG+
Sbjct: 184  KNRIIITTDSSGSVAASVTSSTHERKSKTNMVVKHERIYLRHNTFGDDIPIVVVMRAMGM 243

Query: 2824 ESDQEFVQMVGRDPRFGGILAPSLQNCASYGIYTKELALEYLGTKVKSMRFGNEKSERSK 2645
            ESDQE VQMVGRDP++ GIL PSLQ CA+  IYT   ALEYLG+KV+             
Sbjct: 244  ESDQEIVQMVGRDPKYAGILNPSLQECAALKIYTSHQALEYLGSKVR------------- 290

Query: 2644 VDEARDILHNVFLANVPVHKFDFRPKCIYVAVMLRRMIEAMLNPEAVDDKDYVGNKRLEL 2465
            VDEARDIL  V LA+VPVH+FDFR KCIY+AV++R+M+EAMLN EAVDD DYVGNKRLEL
Sbjct: 291  VDEARDILATVVLAHVPVHQFDFRAKCIYLAVIIRKMLEAMLNREAVDDMDYVGNKRLEL 350

Query: 2464 AGVLIALLFEDLFKRMNQEIKSHVDKTFSK-QRSTMFDVAKAIPPHIISYGLEHAISSGN 2288
            AG L++LLFEDLFKRMN E+K  +D T SK  RST FD+ K I P  ++ GLEHAISSGN
Sbjct: 351  AGQLLSLLFEDLFKRMNAELKKSMDATLSKANRSTQFDIIKLIRPDTLTNGLEHAISSGN 410

Query: 2287 WNVKRFKMDRKGVTQVVSRLSYIASLGHMTRIQSQFEKTRKVSGPRALQSSQWGMLCPCD 2108
            W VKRFKMDRKGVTQVVSRLS+IA+LGHMTRI SQFEKTRKVSGPRALQ SQWGMLCPCD
Sbjct: 411  WAVKRFKMDRKGVTQVVSRLSFIAALGHMTRISSQFEKTRKVSGPRALQPSQWGMLCPCD 470

Query: 2107 TPEGEACGLVKNLALMTHVTTDEEEAPLITLCHTLGVEDLSLLSGEELHSRKAYLIIFNG 1928
            TPEGEACGLVKNL+LMTHVTTDEEEAPLI LC TLGVEDLSLLSGEELHS K YL+ FNG
Sbjct: 471  TPEGEACGLVKNLSLMTHVTTDEEEAPLIELCTTLGVEDLSLLSGEELHSPKTYLVFFNG 530

Query: 1927 LMLGIHRQPKRFAHFLRILRRAGKIGEFVSVFVNDK-QRCVYVASDGGRVCRPLVIADNG 1751
             +LG+HR+P RFA  LR LRRAGKIGEFVSV VN K QR + +ASDGGRVCRPLVIAD G
Sbjct: 531  TILGVHRRPNRFAEVLRKLRRAGKIGEFVSVHVNPKHQRNIQIASDGGRVCRPLVIADKG 590

Query: 1750 ISRIKEHHMKELRDGFRTFDDFLREGLVEYLDVNEENNALIALYESEATESTSHIEIEPF 1571
            +SR+KEHHMKEL+DGFRTFDDFLREGLVEYLDVNEENN+LIALYE +AT  T+HIEIEPF
Sbjct: 591  VSRVKEHHMKELKDGFRTFDDFLREGLVEYLDVNEENNSLIALYEGDATPDTTHIEIEPF 650

Query: 1570 TILGVCAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAYNQLCRMDTLLYLLVYPQRPLLTT 1391
            TILGVCAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAYNQL RMDTLLYLLVYPQRPLL+T
Sbjct: 651  TILGVCAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAYNQLQRMDTLLYLLVYPQRPLLST 710

Query: 1390 KTIELVKYDKLGAGQNATVAVMSYSGYDIEDAIVMNKASLDRGFGRCIVMKKYSAVLKKH 1211
            K+IELV YDKLGAGQNATVAVMSYSGYDIEDAIVMNK+SLDRGFGRCIV+KK    +KK+
Sbjct: 711  KSIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVIKKSVVPMKKY 770

Query: 1210 PNRTQDRIIGPTSSSG-----RVDTRCQALDNDGIAAPGEIIRNHDIYINKQTPTKTREE 1046
             NRT DRI+ P   S      +V  R Q  D+DGIAA GE+IR  DIY+NKQ+P  TR  
Sbjct: 771  ANRTADRIMAPELQSSAKGGVQVVARQQLQDHDGIAAVGEMIRPGDIYVNKQSPIDTRNN 830

Query: 1045 VKNPMALPDSEYKFTPQTYK--APEPSVVDKVVLTSNEEDALNIKFLFRQTRRPELGDKF 872
            V NPMALPDS YK TPQTYK  A E +VVDKV+LTSN+E+   +K L RQTRRPE+GDKF
Sbjct: 831  VNNPMALPDSAYKRTPQTYKGAAGETAVVDKVLLTSNDENHFVVKCLIRQTRRPEVGDKF 890

Query: 871  SSRHGQKGVCGNIVQQEDFPFSERGICPDLIMNPHGFPSRMTIGKMIELLGGKAGVCCGK 692
            SSRHGQKGVCG IVQQEDFPFSERGICPDLIMNPHGFPSRMT+GKMIELLGGKAG+  GK
Sbjct: 891  SSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGLHNGK 950

Query: 691  FHYGSAFGEPSGHADKVETICATLVKHGFCYSGKDLIYSGITGYPLQAYIFMGPIYYQKL 512
            FHYGSAFGEPSGHADKV TI ATLVKHGF YSGKD IYSGITG PLQAYIFMGPIYYQKL
Sbjct: 951  FHYGSAFGEPSGHADKVSTISATLVKHGFSYSGKDFIYSGITGSPLQAYIFMGPIYYQKL 1010

Query: 511  KHMVVDKMHARASGPRMMLTRQPTEGRSRDGGLRLGEMERDCLIAYGASMMILERLMISS 332
            KHMV+DKMHARA GPR++LTRQPTEGRSR+GGLRLGEMERDCLIAYGASMMILERLMISS
Sbjct: 1011 KHMVLDKMHARARGPRVVLTRQPTEGRSREGGLRLGEMERDCLIAYGASMMILERLMISS 1070

Query: 331  DQFEIQVCTKCGLLGYYNHKLKMGFCSTCKSGEEIATMKLPYACKLLFQELQSMNIVPRL 152
            DQF+IQVCTKCG++GYY+HKLK+  CSTCKSG+ IATMKLPYACKLLFQELQSMNIVPRL
Sbjct: 1071 DQFQIQVCTKCGMIGYYHHKLKICLCSTCKSGDNIATMKLPYACKLLFQELQSMNIVPRL 1130

Query: 151  QLAEA 137
             LAEA
Sbjct: 1131 TLAEA 1135


>ref|XP_002977127.1| hypothetical protein SELMODRAFT_443461 [Selaginella moellendorffii]
            gi|300155103|gb|EFJ21736.1| hypothetical protein
            SELMODRAFT_443461 [Selaginella moellendorffii]
          Length = 1386

 Score = 1729 bits (4478), Expect = 0.0
 Identities = 857/1176 (72%), Positives = 988/1176 (84%), Gaps = 22/1176 (1%)
 Frame = -3

Query: 3598 HNNCWQKSF-STMEDDEVDYENERNLAAPVKTAVDKFQLLPAFLKVRGLVKQHIDSFNFF 3422
            H N  +KSF     D  +   +   L APVKTAVDKFQLLPAF KVRGLVKQH+DS+N+F
Sbjct: 225  HKNTMRKSFFQEPRDYLLTRRSYAGLDAPVKTAVDKFQLLPAFHKVRGLVKQHLDSYNYF 284

Query: 3421 VNHEIKKIIHAKANEKVISENNPNFYLKY---------------LDIRVDRPCLEEDLLH 3287
            VN EIKKIIHAK NEK+ S+ +PNFY+KY               LDI V  P +E+D + 
Sbjct: 285  VNCEIKKIIHAKGNEKITSDVDPNFYIKYACDTFQYFTNILFRFLDIFVGTPSIEQDYIR 344

Query: 3286 VETTPHQCRLRDMTYAAPIKVDVEYTRGNEIVVRKGK---GAITIGRLPIMLRSCQCILT 3116
             + TP QCRLRDMTY+API VD+EYTRG +I+ RKGK   GA  IGR+P+MLRS +CILT
Sbjct: 345  QDITPQQCRLRDMTYSAPISVDIEYTRGKDIITRKGKDGQGAQVIGRMPVMLRSSRCILT 404

Query: 3115 GKSETELAKLGECPLDPGGYFVVKGTEKVILIQEQLSKNRILIDTDSKGXXXXXXXXXTH 2936
            GKS+ ELAKLGECPLDPGGYFVVKGTEKVILIQEQLSKNRI+ID+DS G         TH
Sbjct: 405  GKSDAELAKLGECPLDPGGYFVVKGTEKVILIQEQLSKNRIIIDSDSTGSVTASVTSSTH 464

Query: 2935 EKKSKTIIIVKHEIFYLKLNTFTEDVPIVIVVKAMGIESDQEFVQMVGRDPRFGGILAPS 2756
            E+KSKT II+KHE  Y+KLN F++DVPIV+V+KAMG+ESDQE +QMVG DP+F GILAPS
Sbjct: 465  ERKSKTNIIIKHEKIYVKLNVFSDDVPIVVVMKAMGMESDQEIIQMVGTDPKFAGILAPS 524

Query: 2755 LQNCASYGIYTKELALEYLGTKVKSMRFGNEKSERSKVDEARDILHNVFLANVPVHKFDF 2576
            +Q CAS G+YT   ALEYLGTKV+  R    K  +SKVDEARDIL NVFLA+V VH++DF
Sbjct: 525  MQECASLGVYTTHQALEYLGTKVRVNRQWGSKQTKSKVDEARDILLNVFLAHVAVHRYDF 584

Query: 2575 RPKCIYVAVMLRRMIEAMLNPEAVDDKDYVGNKRLELAGVLIALLFEDLFKRMNQEIKSH 2396
            RPKCIYVA+MLRRM+EA+L+ E VDD+DYVGNKRLELAG L+ALLFEDLFKR   E+KS+
Sbjct: 585  RPKCIYVALMLRRMLEAILDKECVDDRDYVGNKRLELAGQLLALLFEDLFKRSCSELKSN 644

Query: 2395 VDKTFSKQ-RSTMFDVAKAIPPHIISYGLEHAISSGNWNVKRFKMDRKGVTQVVSRLSYI 2219
            VD+T SK  R++ +DV+K++ P +++ GLE+AISSGNW VKRF+MD+KGVTQVVSRLSYI
Sbjct: 645  VDRTLSKMNRASQYDVSKSLKPDMLTSGLENAISSGNWTVKRFRMDKKGVTQVVSRLSYI 704

Query: 2218 ASLGHMTRIQSQFEKTRKVSGPRALQSSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDE 2039
            A+LGHMTR+ SQFEK+RK           WGMLCPCDTPEGE CGL KNLALMTH+TTD+
Sbjct: 705  AALGHMTRVASQFEKSRK-----------WGMLCPCDTPEGEGCGLTKNLALMTHITTDD 753

Query: 2038 EEAPLITLCHTLGVEDLSLLSGEELHSRKAYLIIFNGLMLGIHRQPKRFAHFLRILRRAG 1859
            EEAPLI LC  LGVED++LLSGEE HS+ A+L++FNG +LGIHR+P++FA  +R LRRAG
Sbjct: 754  EEAPLIDLCTNLGVEDINLLSGEEFHSKNAFLVMFNGTILGIHRRPQQFATLMRKLRRAG 813

Query: 1858 KIGEFVSVFVNDKQRCVYVASDGGRVCRPLVIADNGISRIKEHHMKELRDGFRTFDDFLR 1679
            KIGEFVS+FVN+KQRC+Y+ASDGGRVCRP+VIAD+G+SRIKEHHMKEL+DGFRTFDDFLR
Sbjct: 814  KIGEFVSIFVNEKQRCIYIASDGGRVCRPVVIADHGVSRIKEHHMKELKDGFRTFDDFLR 873

Query: 1678 EGLVEYLDVNEENNALIALYESEATESTSHIEIEPFTILGVCAGLIPYPHHNQSPRNTYQ 1499
            EGLVEYLDVNEENNALIALYE EA  +T+HIEIEPFTILGVCAGLIPYPHHNQSPRNTYQ
Sbjct: 874  EGLVEYLDVNEENNALIALYEKEADSTTTHIEIEPFTILGVCAGLIPYPHHNQSPRNTYQ 933

Query: 1498 CAMGKQAMGNIAYNQLCRMDTLLYLLVYPQRPLLTTKTIELVKYDKLGAGQNATVAVMSY 1319
            CAMGKQAMGNIAYNQL R+DTLLYLLVYPQRPLLTTK+IELV YDKLGAGQNA+VAVMSY
Sbjct: 934  CAMGKQAMGNIAYNQLQRIDTLLYLLVYPQRPLLTTKSIELVNYDKLGAGQNASVAVMSY 993

Query: 1318 SGYDIEDAIVMNKASLDRGFGRCIVMKKYSAVLKKHPNRTQDRIIGPTSSSGRVDTRCQA 1139
            SGYDIEDAIVMNKASLDRGFGRCIV+KK+S +++K+ NRT DRI+ P           Q 
Sbjct: 994  SGYDIEDAIVMNKASLDRGFGRCIVLKKFSCLVRKYENRTMDRIVAPRQHG---HATSQL 1050

Query: 1138 LDNDGIAAPGEIIRNHDIYINKQTPTKTREEVKNPMALPDSEYKFTPQTYKAP--EPSVV 965
            LD DGIA+ GE I + DI++NK++P   +    NP+ALPDS Y+ TPQ YK P  E ++V
Sbjct: 1051 LDQDGIASVGERIYDKDIFVNKESPKDVKTTFLNPLALPDSAYRPTPQRYKGPLGESAIV 1110

Query: 964  DKVVLTSNEEDALNIKFLFRQTRRPELGDKFSSRHGQKGVCGNIVQQEDFPFSERGICPD 785
            DKV+LT+NE   + IK   R TRRPELGDKFSSRHGQKGVCG IV+Q+DFPF+ERG+CPD
Sbjct: 1111 DKVLLTTNESQQMVIKCQVRHTRRPELGDKFSSRHGQKGVCGTIVEQQDFPFTERGVCPD 1170

Query: 784  LIMNPHGFPSRMTIGKMIELLGGKAGVCCGKFHYGSAFGEPSGHADKVETICATLVKHGF 605
            LIMNPHGFPSRMT+GKMIELLGGKAGV  GK+HYGSAFGEPSGHAD VE I ATLVKHGF
Sbjct: 1171 LIMNPHGFPSRMTVGKMIELLGGKAGVQSGKYHYGSAFGEPSGHADTVEAISATLVKHGF 1230

Query: 604  CYSGKDLIYSGITGYPLQAYIFMGPIYYQKLKHMVVDKMHARASGPRMMLTRQPTEGRSR 425
             Y GKDLIYSGITG PLQAYI+MGPIYYQKLKHMV+DKMHARA GPR++LTRQPTEGRSR
Sbjct: 1231 SYCGKDLIYSGITGCPLQAYIYMGPIYYQKLKHMVLDKMHARAQGPRVVLTRQPTEGRSR 1290

Query: 424  DGGLRLGEMERDCLIAYGASMMILERLMISSDQFEIQVCTKCGLLGYYNHKLKMGFCSTC 245
            +GGLRLGEMERDCL+AYG+SM+ILERLMISSDQF++QVCT CGLLGYY+HKLKM FCS C
Sbjct: 1291 EGGLRLGEMERDCLVAYGSSMLILERLMISSDQFQVQVCTNCGLLGYYSHKLKMNFCSYC 1350

Query: 244  KSGEEIATMKLPYACKLLFQELQSMNIVPRLQLAEA 137
            K+GE +A MKLPYACKLLFQELQSMNIVPRLQLAEA
Sbjct: 1351 KNGENMAAMKLPYACKLLFQELQSMNIVPRLQLAEA 1386


>ref|XP_002992124.1| hypothetical protein SELMODRAFT_430375 [Selaginella moellendorffii]
            gi|300140050|gb|EFJ06779.1| hypothetical protein
            SELMODRAFT_430375 [Selaginella moellendorffii]
          Length = 1440

 Score = 1720 bits (4454), Expect = 0.0
 Identities = 855/1177 (72%), Positives = 986/1177 (83%), Gaps = 23/1177 (1%)
 Frame = -3

Query: 3598 HNNCWQKSF-STMEDDEVDYENERNLAAPVKTAVDKFQLLPAFLKVRGLVKQHIDSFNFF 3422
            H N  +KSF     D  +   +   L APVKTAVDKFQLLPAF KVRGLVKQH+DS+N+F
Sbjct: 285  HKNTMRKSFFQEPRDYLLTRRSYAGLDAPVKTAVDKFQLLPAFHKVRGLVKQHLDSYNYF 344

Query: 3421 VNHEIKKIIHAKANEKVISENNPNFYLKY----------------LDIRVDRPCLEEDLL 3290
            VN EIKKIIHAK NEK+ S+ +PNFY+KY                LDI V  P +E+D +
Sbjct: 345  VNCEIKKIIHAKGNEKITSDVDPNFYIKYACDTFFQYFTNILFRFLDIFVGTPSIEQDYI 404

Query: 3289 HVETTPHQCRLRDMTYAAPIKVDVEYTRGNEIVVRKGK---GAITIGRLPIMLRSCQCIL 3119
              + TP QCRLRDMTY+API VD+EYTRG +I+ RKGK   GA  IGR+P+MLRS +CIL
Sbjct: 405  RQDITPQQCRLRDMTYSAPISVDIEYTRGKDIITRKGKDGQGAQVIGRMPVMLRSSRCIL 464

Query: 3118 TGKSETELAKLGECPLDPGGYFVVKGTEKVILIQEQLSKNRILIDTDSKGXXXXXXXXXT 2939
            TGKS+ ELAKLGECPLDPGGYFVVKGTEKVILIQEQLSKNRI+ID+DS G          
Sbjct: 465  TGKSDAELAKLGECPLDPGGYFVVKGTEKVILIQEQLSKNRIIIDSDSTG---------- 514

Query: 2938 HEKKSKTIIIVKHEIFYLKLNTFTEDVPIVIVVKAMGIESDQEFVQMVGRDPRFGGILAP 2759
                  ++ +  H     KLN F++DVPIV+V+KAMG+ESDQE +QMVG DP+F GILAP
Sbjct: 515  ------SLSLAVH--MRGKLNVFSDDVPIVVVMKAMGMESDQEIIQMVGTDPKFAGILAP 566

Query: 2758 SLQNCASYGIYTKELALEYLGTKVKSMRFGNEKSERSKVDEARDILHNVFLANVPVHKFD 2579
            S+Q CAS G+YT   ALEYLGTKV+  R    K  +SKVDEARDIL NVFLA+V VHK+D
Sbjct: 567  SMQECASLGVYTTHQALEYLGTKVRVNRQWGSKQTKSKVDEARDILLNVFLAHVAVHKYD 626

Query: 2578 FRPKCIYVAVMLRRMIEAMLNPEAVDDKDYVGNKRLELAGVLIALLFEDLFKRMNQEIKS 2399
            FRPKCIYVA+MLRRM+EA+L+ E VDD+DYVGNKRLELAG L+ALLFEDLFKR   E+KS
Sbjct: 627  FRPKCIYVALMLRRMLEAILDKECVDDRDYVGNKRLELAGQLLALLFEDLFKRSCSELKS 686

Query: 2398 HVDKTFSKQ-RSTMFDVAKAIPPHIISYGLEHAISSGNWNVKRFKMDRKGVTQVVSRLSY 2222
            +VD+T SK  R++ +DV+K++ P +++ GLE+AISSGNW VKRF+MD+KGVTQVVSRLSY
Sbjct: 687  NVDRTLSKMNRASQYDVSKSLKPDMLTSGLENAISSGNWTVKRFRMDKKGVTQVVSRLSY 746

Query: 2221 IASLGHMTRIQSQFEKTRKVSGPRALQSSQWGMLCPCDTPEGEACGLVKNLALMTHVTTD 2042
            IA+LGHMTR+ SQFEK+RKVSGPR+LQ SQWGMLCPCDTPEGE CGL KNLALMTH+TTD
Sbjct: 747  IAALGHMTRVASQFEKSRKVSGPRSLQPSQWGMLCPCDTPEGEGCGLTKNLALMTHITTD 806

Query: 2041 EEEAPLITLCHTLGVEDLSLLSGEELHSRKAYLIIFNGLMLGIHRQPKRFAHFLRILRRA 1862
            +EEAPLI LC  LGVED++LLSGEE HS+ A+L++FNG +LGIHR+P++FA  +R LRRA
Sbjct: 807  DEEAPLIDLCTNLGVEDINLLSGEEFHSKNAFLVMFNGTILGIHRRPQQFATLMRKLRRA 866

Query: 1861 GKIGEFVSVFVNDKQRCVYVASDGGRVCRPLVIADNGISRIKEHHMKELRDGFRTFDDFL 1682
            GKIGEFVS+FVN+KQRC+Y+ASDGGRVCRP+VIAD+G+SRIKEHHMKEL+DGFRTFDDFL
Sbjct: 867  GKIGEFVSIFVNEKQRCIYIASDGGRVCRPVVIADHGVSRIKEHHMKELKDGFRTFDDFL 926

Query: 1681 REGLVEYLDVNEENNALIALYESEATESTSHIEIEPFTILGVCAGLIPYPHHNQSPRNTY 1502
            REGLVEYLDVNEENNALIALYE EA  +T+HIEIEPFTILGVCAGLIPYPHHNQSPRNTY
Sbjct: 927  REGLVEYLDVNEENNALIALYEKEADSTTTHIEIEPFTILGVCAGLIPYPHHNQSPRNTY 986

Query: 1501 QCAMGKQAMGNIAYNQLCRMDTLLYLLVYPQRPLLTTKTIELVKYDKLGAGQNATVAVMS 1322
            QCAMGKQAMGNIAYNQL R+DTLLYLLVYPQRPLLTTK+IELV YDKLGAGQNA+VAVMS
Sbjct: 987  QCAMGKQAMGNIAYNQLQRIDTLLYLLVYPQRPLLTTKSIELVNYDKLGAGQNASVAVMS 1046

Query: 1321 YSGYDIEDAIVMNKASLDRGFGRCIVMKKYSAVLKKHPNRTQDRIIGPTSSSGRVDTRCQ 1142
            YSGYDIEDAIVMNKASLDRGFGRCIV+KK+S +++K+ NRT DRI+ P           Q
Sbjct: 1047 YSGYDIEDAIVMNKASLDRGFGRCIVLKKFSCLVRKYENRTMDRIVAPRQHG---HATSQ 1103

Query: 1141 ALDNDGIAAPGEIIRNHDIYINKQTPTKTREEVKNPMALPDSEYKFTPQTYKAP--EPSV 968
             LD DGIA+ GE I + DI++NK++P   +    NP+ALPDS Y+ TPQ YK P  E ++
Sbjct: 1104 LLDQDGIASVGERIYDKDIFVNKESPKDVKTTFLNPLALPDSAYRPTPQRYKGPLGESAI 1163

Query: 967  VDKVVLTSNEEDALNIKFLFRQTRRPELGDKFSSRHGQKGVCGNIVQQEDFPFSERGICP 788
            VDKV+LT+NE   + IK   R TRRPELGDKFSSRHGQKGVCG IV+Q+DFPF+ERG+CP
Sbjct: 1164 VDKVLLTTNESQQMVIKCQVRHTRRPELGDKFSSRHGQKGVCGTIVEQQDFPFTERGVCP 1223

Query: 787  DLIMNPHGFPSRMTIGKMIELLGGKAGVCCGKFHYGSAFGEPSGHADKVETICATLVKHG 608
            DLIMNPHGFPSRMT+GKMIELLGGKAGV  GK+HYGSAFGEPSGHAD VE I ATLVKHG
Sbjct: 1224 DLIMNPHGFPSRMTVGKMIELLGGKAGVQSGKYHYGSAFGEPSGHADTVEAISATLVKHG 1283

Query: 607  FCYSGKDLIYSGITGYPLQAYIFMGPIYYQKLKHMVVDKMHARASGPRMMLTRQPTEGRS 428
            F Y GKDLIYSGITG PLQAYI+MGPIYYQKLKHMV+DKMHARA GPR++LTRQPTEGRS
Sbjct: 1284 FSYCGKDLIYSGITGCPLQAYIYMGPIYYQKLKHMVLDKMHARAQGPRVVLTRQPTEGRS 1343

Query: 427  RDGGLRLGEMERDCLIAYGASMMILERLMISSDQFEIQVCTKCGLLGYYNHKLKMGFCST 248
            R+GGLRLGEMERDCL+AYG+SM+ILERLMISSDQF++QVCT CGLLGYY+HKLKM FCS 
Sbjct: 1344 REGGLRLGEMERDCLVAYGSSMLILERLMISSDQFQVQVCTNCGLLGYYSHKLKMNFCSY 1403

Query: 247  CKSGEEIATMKLPYACKLLFQELQSMNIVPRLQLAEA 137
            CK+GE +A MKLPYACKLLFQELQSMNIVPRLQLAEA
Sbjct: 1404 CKNGENMAAMKLPYACKLLFQELQSMNIVPRLQLAEA 1440


>ref|XP_006494572.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2-like isoform
            X1 [Citrus sinensis] gi|568883651|ref|XP_006494573.1|
            PREDICTED: DNA-directed RNA polymerase III subunit
            RPC2-like isoform X2 [Citrus sinensis]
          Length = 1149

 Score = 1643 bits (4255), Expect = 0.0
 Identities = 813/1138 (71%), Positives = 952/1138 (83%), Gaps = 4/1138 (0%)
 Frame = -3

Query: 3538 NERNLAAPVKTAVDKFQLLPAFLKVRGLVKQHIDSFNFFVNHEIKKIIHAKANEKVISEN 3359
            +++ LAAPVK+ VDKFQLLP FLKVRGLVKQH+DSFN+FVN  I+KI+  +AN++++S  
Sbjct: 17   DKQKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIV--RANDRIVSGI 74

Query: 3358 NPNFYLKYLDIRVDRPCLEEDLLHVETTPHQCRLRDMTYAAPIKVDVEYTRGNEIV-VRK 3182
            +P+ +L++ D+R+ +P +  D +  +  PH CRL DMTYAAPI V++EY +G+       
Sbjct: 75   DPSIFLRFKDVRIGQPSMTVDGVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTM 134

Query: 3181 GKGAITIGRLPIMLRSCQCILTGKSETELAKLGECPLDPGGYFVVKGTEKVILIQEQLSK 3002
             K  + IGR+PIMLRSC+C+L GK E ELA+LGECPLDPGGYF++KGTEKV+LIQEQLSK
Sbjct: 135  EKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSK 194

Query: 3001 NRILIDTDSKGXXXXXXXXXTHEKKSKTIIIVKHEIFYLKLNTFTEDVPIVIVVKAMGIE 2822
            NR++IDTD KG         T   KSKT+I ++    YL LN F + +PI++V+KAMGIE
Sbjct: 195  NRVIIDTDKKGNINASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVVMKAMGIE 254

Query: 2821 SDQEFVQMVGRDPRFGGILAPSLQNCASYGIYTKELALEYLGTKVKSMRFGNEKSERSKV 2642
            SDQE VQMVGRDPR+  +L PS++ CA+  IYT+E ALEYL  KVK   FG+  ++R   
Sbjct: 255  SDQEVVQMVGRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTFGSPPNDRE-- 312

Query: 2641 DEARDILHNVFLANVPVHKFDFRPKCIYVAVMLRRMIEAMLNPEAVDDKDYVGNKRLELA 2462
              A  IL +VFLANVPVH  +FRPKC YVAVMLRRM+EAMLN +A+DDKDYVGNKRLEL+
Sbjct: 313  GRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELS 372

Query: 2461 GVLIALLFEDLFKRMNQEIKSHVDKTFSK-QRSTMFDVAKAIPPHIISYGLEHAISSGNW 2285
            G L++LLFEDLFK M  E++  VD   SK  RS+ FD+++ I    I+ GLE  +S+GN+
Sbjct: 373  GQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNF 432

Query: 2284 NVKRFKMDRKGVTQVVSRLSYIASLGHMTRIQSQFEKTRKVSGPRALQSSQWGMLCPCDT 2105
            +VKRFKM RKG+TQV++RLS+I +LGHMTR+  QFEK+RKVSGPRALQ SQWGMLCPCDT
Sbjct: 433  DVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDT 492

Query: 2104 PEGEACGLVKNLALMTHVTTDEEEAPLITLCHTLGVEDLSLLSGEELHSRKAYLIIFNGL 1925
            PEGEACGLVKNLALMTHVTTDEEE PLI+LC+ LGVEDL LLSGEELH+  ++L+IFNGL
Sbjct: 493  PEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGL 552

Query: 1924 MLGIHRQPKRFAHFLRILRRAGKIGEFVSVFVNDKQRCVYVASDGGRVCRPLVIADNGIS 1745
            +LG HR+PK FA  +R LRRAGKIGEFVSVFVN+KQRCVY+ASDGGRVCRPLVIAD GIS
Sbjct: 553  ILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGIS 612

Query: 1744 RIKEHHMKELRDGFRTFDDFLREGLVEYLDVNEENNALIALYESEATESTSHIEIEPFTI 1565
            RIKEHHMKEL DG R+FDDFLREGL+EYLDVNEENNALIALYE +AT  T+HIEIEPFTI
Sbjct: 613  RIKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTHIEIEPFTI 672

Query: 1564 LGVCAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAYNQLCRMDTLLYLLVYPQRPLLTTKT 1385
            LGV AGLIPYPHHNQSPRNTYQCAMGKQAMGNIA+NQLCRMD+LLYLLVYPQRPLLTT+T
Sbjct: 673  LGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRT 732

Query: 1384 IELVKYDKLGAGQNATVAVMSYSGYDIEDAIVMNKASLDRGFGRCIVMKKYSAVLKKHPN 1205
            IELV YDKLGAGQNATVAVMSYSGYDIEDAIVMNK+SLDRGFGRCIV+KKY+A+ +K+ N
Sbjct: 733  IELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYAN 792

Query: 1204 RTQDRIIGPTSSSGRVDTRCQALDNDGIAAPGEIIRNHDIYINKQTPTKTREEVKNPMAL 1025
             T DRI+ P   +G    R Q LD+DG+AAPGEII+ +D+YINK++P +TR  + +P   
Sbjct: 793  STSDRILRP-DRTGPGAERMQILDDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQ 851

Query: 1024 PDSEYKFTPQTYKAP--EPSVVDKVVLTSNEEDALNIKFLFRQTRRPELGDKFSSRHGQK 851
             DS Y+   QTYK P  E  VVD+V L S++   L IKFL R TRRPELGDKFSSRHGQK
Sbjct: 852  TDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQK 911

Query: 850  GVCGNIVQQEDFPFSERGICPDLIMNPHGFPSRMTIGKMIELLGGKAGVCCGKFHYGSAF 671
            GVCG IVQQEDFPFSERGICPDLIMNPHGFPSRMT+GKMIELLGGKAGV CG+FHYGSAF
Sbjct: 912  GVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAF 971

Query: 670  GEPSGHADKVETICATLVKHGFCYSGKDLIYSGITGYPLQAYIFMGPIYYQKLKHMVVDK 491
            GEPSGHAD VE+I  TLVKHGF Y+GKD+IYSGITG PLQAYIFMGPIYYQKLKHMV+DK
Sbjct: 972  GEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDK 1031

Query: 490  MHARASGPRMMLTRQPTEGRSRDGGLRLGEMERDCLIAYGASMMILERLMISSDQFEIQV 311
            MHAR SGPR+MLTRQPTEGR+R+GGLR+GEMERDCLIAYGASM+I ERLM+SSD FE+QV
Sbjct: 1032 MHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQV 1091

Query: 310  CTKCGLLGYYNHKLKMGFCSTCKSGEEIATMKLPYACKLLFQELQSMNIVPRLQLAEA 137
            C  CGLLGYYNHKLK G CSTCK+G+ I++MKLPYACKLL QELQSMNIVPRL+LAEA
Sbjct: 1092 CRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSMNIVPRLKLAEA 1149


>ref|XP_006432385.1| hypothetical protein CICLE_v10000078mg [Citrus clementina]
            gi|557534507|gb|ESR45625.1| hypothetical protein
            CICLE_v10000078mg [Citrus clementina]
          Length = 1149

 Score = 1642 bits (4253), Expect = 0.0
 Identities = 812/1138 (71%), Positives = 951/1138 (83%), Gaps = 4/1138 (0%)
 Frame = -3

Query: 3538 NERNLAAPVKTAVDKFQLLPAFLKVRGLVKQHIDSFNFFVNHEIKKIIHAKANEKVISEN 3359
            +++ LAAPVK+ VDKFQLLP FLKVRGLVKQH+DSFN+FVN  I+KI+  +AN++++S  
Sbjct: 17   DKQKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIV--RANDRIVSGI 74

Query: 3358 NPNFYLKYLDIRVDRPCLEEDLLHVETTPHQCRLRDMTYAAPIKVDVEYTRGNEIV-VRK 3182
            +P+ +L++ D+R+ +P +  D +  +  PH CRL DMTYAAPI V++EY +G+       
Sbjct: 75   DPSIFLRFKDVRIGQPSMTVDGVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTM 134

Query: 3181 GKGAITIGRLPIMLRSCQCILTGKSETELAKLGECPLDPGGYFVVKGTEKVILIQEQLSK 3002
             K  + IGR+PIMLRSC+C+L GK E ELA+LGECPLDPGGYF++KGTEKV+LIQEQLSK
Sbjct: 135  EKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSK 194

Query: 3001 NRILIDTDSKGXXXXXXXXXTHEKKSKTIIIVKHEIFYLKLNTFTEDVPIVIVVKAMGIE 2822
            NR++IDTD KG         T   KSKT+I ++    YL LN F + +PI++V+KAMG+E
Sbjct: 195  NRVIIDTDKKGNINASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVVMKAMGME 254

Query: 2821 SDQEFVQMVGRDPRFGGILAPSLQNCASYGIYTKELALEYLGTKVKSMRFGNEKSERSKV 2642
            SDQE VQMVGRDPR+  +L PS++ CA+  IYT+E ALEYL  KVK   FG+  ++R   
Sbjct: 255  SDQEVVQMVGRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTFGSPPNDRE-- 312

Query: 2641 DEARDILHNVFLANVPVHKFDFRPKCIYVAVMLRRMIEAMLNPEAVDDKDYVGNKRLELA 2462
              A  IL +VFLANVPVH  +FRPKC YVAVMLRRM+EAMLN +A+DDKDYVGNKRLEL+
Sbjct: 313  GRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELS 372

Query: 2461 GVLIALLFEDLFKRMNQEIKSHVDKTFSK-QRSTMFDVAKAIPPHIISYGLEHAISSGNW 2285
            G L++LLFEDLFK M  E++  VD   SK  RS+ FD+++ I    I+ GLE  +S+GN+
Sbjct: 373  GQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNF 432

Query: 2284 NVKRFKMDRKGVTQVVSRLSYIASLGHMTRIQSQFEKTRKVSGPRALQSSQWGMLCPCDT 2105
            +VKRFKM RKG+TQV++RLS+I +LGHMTR+  QFEK+RKVSGPRALQ SQWGMLCPCDT
Sbjct: 433  DVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDT 492

Query: 2104 PEGEACGLVKNLALMTHVTTDEEEAPLITLCHTLGVEDLSLLSGEELHSRKAYLIIFNGL 1925
            PEGEACGLVKNLALMTHVTTDEEE PLI+LC+ LGVEDL LLSGEELH+  ++L+IFNGL
Sbjct: 493  PEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGL 552

Query: 1924 MLGIHRQPKRFAHFLRILRRAGKIGEFVSVFVNDKQRCVYVASDGGRVCRPLVIADNGIS 1745
            +LG HR+PK FA  +R LRRAGKIGEFVSVFVN+KQRCVY+ASDGGRVCRPLVIAD GIS
Sbjct: 553  ILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGIS 612

Query: 1744 RIKEHHMKELRDGFRTFDDFLREGLVEYLDVNEENNALIALYESEATESTSHIEIEPFTI 1565
            RIKEHHMKEL DG R+FDDFLREGL+EYLDVNEENNALIALYE +AT  T+HIEIEPFTI
Sbjct: 613  RIKEHHMKELSDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTHIEIEPFTI 672

Query: 1564 LGVCAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAYNQLCRMDTLLYLLVYPQRPLLTTKT 1385
            LGV AGLIPYPHHNQSPRNTYQCAMGKQAMGNIA+NQLCRMD+LLYLLVYPQRPLLTT+T
Sbjct: 673  LGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRT 732

Query: 1384 IELVKYDKLGAGQNATVAVMSYSGYDIEDAIVMNKASLDRGFGRCIVMKKYSAVLKKHPN 1205
            IELV YDKLGAGQNATVAVMSYSGYDIEDAIVMNK+SLDRGFGRCIV+KKY+A+ +K+ N
Sbjct: 733  IELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYAN 792

Query: 1204 RTQDRIIGPTSSSGRVDTRCQALDNDGIAAPGEIIRNHDIYINKQTPTKTREEVKNPMAL 1025
             T DRI+ P   +G    R Q LD+DG+AAPGEII+ +D+YINK++P +TR  + +P   
Sbjct: 793  STSDRILRP-DRTGPGSERMQILDDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQ 851

Query: 1024 PDSEYKFTPQTYKAP--EPSVVDKVVLTSNEEDALNIKFLFRQTRRPELGDKFSSRHGQK 851
             DS Y+   QTYK P  E  VVD+V L S++   L IKFL R TRRPELGDKFSSRHGQK
Sbjct: 852  TDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQK 911

Query: 850  GVCGNIVQQEDFPFSERGICPDLIMNPHGFPSRMTIGKMIELLGGKAGVCCGKFHYGSAF 671
            GVCG IVQQEDFPFSERGICPDLIMNPHGFPSRMT+GKMIELLGGKAGV CG+FHYGSAF
Sbjct: 912  GVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAF 971

Query: 670  GEPSGHADKVETICATLVKHGFCYSGKDLIYSGITGYPLQAYIFMGPIYYQKLKHMVVDK 491
            GEPSGHAD VE+I  TLVKHGF Y+GKD+IYSGITG PLQAYIFMGPIYYQKLKHMV+DK
Sbjct: 972  GEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDK 1031

Query: 490  MHARASGPRMMLTRQPTEGRSRDGGLRLGEMERDCLIAYGASMMILERLMISSDQFEIQV 311
            MHAR SGPR+MLTRQPTEGR+R+GGLR+GEMERDCLIAYGASM+I ERLM+SSD FE+QV
Sbjct: 1032 MHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQV 1091

Query: 310  CTKCGLLGYYNHKLKMGFCSTCKSGEEIATMKLPYACKLLFQELQSMNIVPRLQLAEA 137
            C  CGLLGYYNHKLK G CSTCK+G  I++MKLPYACKLL QELQSMNIVPRL+LAEA
Sbjct: 1092 CRVCGLLGYYNHKLKAGICSTCKNGNNISSMKLPYACKLLIQELQSMNIVPRLKLAEA 1149


>ref|XP_002265454.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2 [Vitis
            vinifera]
          Length = 1142

 Score = 1642 bits (4251), Expect = 0.0
 Identities = 815/1136 (71%), Positives = 952/1136 (83%), Gaps = 7/1136 (0%)
 Frame = -3

Query: 3523 AAPVKTAVDKFQLLPAFLKVRGLVKQHIDSFNFFVNHEIKKIIHAKANEKVISENNPNFY 3344
            A PVK AVDKF LLP FLKVRGLVKQH+DSFN+FV  +IKKI+  +AN++++S  +P+ Y
Sbjct: 12   ADPVKQAVDKFPLLPEFLKVRGLVKQHLDSFNYFVKTDIKKIV--RANDRIVSSVDPSIY 69

Query: 3343 LKYLDIRVDRPCLEEDLLHVETTPHQCRLRDMTYAAPIKVDVEYTRGNEIV-VRKGKGAI 3167
            L++ D+R+  P +  D +  +  PH CRL DMTYAAPI V++EY  G+ +   R  K  +
Sbjct: 70   LRFKDVRIGEPSITVDGISEKLNPHTCRLSDMTYAAPILVNIEYITGSHVQKTRVEKNDV 129

Query: 3166 TIGRLPIMLRSCQCILTGKSETELAKLGECPLDPGGYFVVKGTEKVILIQEQLSKNRILI 2987
             IGR+PIMLRSC C+L  K E ELA+LGECPLDPGGYFVVKGTEKVILIQEQLSKNRI+I
Sbjct: 130  VIGRMPIMLRSCCCVLYKKDEAELARLGECPLDPGGYFVVKGTEKVILIQEQLSKNRIII 189

Query: 2986 DTDSKGXXXXXXXXXTHEKKSKTIIIVKHEIFYLKLNTFTEDVPIVIVVKAMGIESDQEF 2807
            DTD KG         T   KSKT+I+++ E  +L+LN FT  +PI+IV+KAMG+ESDQE 
Sbjct: 190  DTDKKGNINASVTSSTESTKSKTVIVMEKEKIWLQLNQFTSKIPIMIVMKAMGMESDQEV 249

Query: 2806 VQMVGRDPRFGGILAPSLQNCASYGIYTKELALEYLGTKVKSMRFGNEKSERSKVDEARD 2627
            VQMVGR+PR+  +L PS++ CAS+GIYT++ ALE+L  KVK + F N   E  K      
Sbjct: 250  VQMVGRNPRYSALLLPSMEECASHGIYTQQQALEFLERKVKKLPFYNPSLE--KEGRGMA 307

Query: 2626 ILHNVFLANVPVHKFDFRPKCIYVAVMLRRMIEAMLNPEAVDDKDYVGNKRLELAGVLIA 2447
            IL + F+ANVPV + +FRPKC+YVAVMLRRM++A+LN +A+DDKDYVGNKRLEL+G LI+
Sbjct: 308  ILRDTFIANVPVRQNNFRPKCLYVAVMLRRMMDAILNKDAMDDKDYVGNKRLELSGQLIS 367

Query: 2446 LLFEDLFKRMNQEIKSHVDKTFSK-QRSTMFDVAKA---IPPHIISYGLEHAISSGNWNV 2279
            LLFEDLFK M  E+K  +D   +K  RS+ FD ++    I    I+ GLE  +S+GNW+V
Sbjct: 368  LLFEDLFKTMISEVKKTIDAILAKPSRSSRFDFSQCLRFIVRDSITVGLERTLSTGNWDV 427

Query: 2278 KRFKMDRKGVTQVVSRLSYIASLGHMTRIQSQFEKTRKVSGPRALQSSQWGMLCPCDTPE 2099
            KRF+M RKG++QVV+RLSYI SLGHMT+I  QFEK+RKVSGPRALQ SQWGMLCPCDTPE
Sbjct: 428  KRFRMHRKGMSQVVARLSYIGSLGHMTKISPQFEKSRKVSGPRALQPSQWGMLCPCDTPE 487

Query: 2098 GEACGLVKNLALMTHVTTDEEEAPLITLCHTLGVEDLSLLSGEELHSRKAYLIIFNGLML 1919
            GEACGLVKNLALMTHVTTDEEE+PLI+LC++LGVEDL LLSGEELH+  ++LIIFNGL+L
Sbjct: 488  GEACGLVKNLALMTHVTTDEEESPLISLCYSLGVEDLELLSGEELHTPNSFLIIFNGLIL 547

Query: 1918 GIHRQPKRFAHFLRILRRAGKIGEFVSVFVNDKQRCVYVASDGGRVCRPLVIADNGISRI 1739
            G HR+P+RFA+ LR LRRAGKIGEFVSVFVN+KQ CVY+ASDGGRVCRP+VIAD G SRI
Sbjct: 548  GKHRRPQRFANALRKLRRAGKIGEFVSVFVNEKQHCVYIASDGGRVCRPVVIADKGKSRI 607

Query: 1738 KEHHMKELRDGFRTFDDFLREGLVEYLDVNEENNALIALYESEATESTSHIEIEPFTILG 1559
            KEHHMKEL DG RTFDDFLR+GL+EYLDVNEENNALIALYE++A   T+HIEIEPFTILG
Sbjct: 608  KEHHMKELIDGVRTFDDFLRDGLIEYLDVNEENNALIALYEADAKPETTHIEIEPFTILG 667

Query: 1558 VCAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAYNQLCRMDTLLYLLVYPQRPLLTTKTIE 1379
            VCAGLIP+PHHNQSPRNTYQCAMGKQAMGNIAYNQLCRMD+LLYLLVYPQRPLLTT+TIE
Sbjct: 668  VCAGLIPFPHHNQSPRNTYQCAMGKQAMGNIAYNQLCRMDSLLYLLVYPQRPLLTTRTIE 727

Query: 1378 LVKYDKLGAGQNATVAVMSYSGYDIEDAIVMNKASLDRGFGRCIVMKKYSAVLKKHPNRT 1199
            LV YDKLGAGQNATVAVMSYSGYDIEDAIVMNK+SLDRGFGRCIVMKK+SAV +++ N  
Sbjct: 728  LVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVMKKFSAVNQRYENNA 787

Query: 1198 QDRIIGPTSSSGRVDTRCQALDNDGIAAPGEIIRNHDIYINKQTPTKTREEVKNPMALPD 1019
             DRI+ P    G    R Q LD+DG+AAPGEII+ +DIYINK++P  T+  + +P+ LPD
Sbjct: 788  SDRIVRPL-KVGHDAERMQILDDDGLAAPGEIIKPNDIYINKESPIITKGPLISPVGLPD 846

Query: 1018 SEYKFTPQTYKAP--EPSVVDKVVLTSNEEDALNIKFLFRQTRRPELGDKFSSRHGQKGV 845
            S YK + QT+K P  E SVVD+V L S++   L IKFL R TRRPE+GDKFSSRHGQKGV
Sbjct: 847  SAYKPSRQTFKGPEGEASVVDRVALCSDKNSNLCIKFLIRHTRRPEVGDKFSSRHGQKGV 906

Query: 844  CGNIVQQEDFPFSERGICPDLIMNPHGFPSRMTIGKMIELLGGKAGVCCGKFHYGSAFGE 665
            CG I+QQEDFPFSERGICPDLIMNPHGFPSRMT+GKMIELLGGKAGV CG+FHYGSAFGE
Sbjct: 907  CGTIIQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGE 966

Query: 664  PSGHADKVETICATLVKHGFCYSGKDLIYSGITGYPLQAYIFMGPIYYQKLKHMVVDKMH 485
            PSGHADKVETI  TLVKHGF YSGKD IYSGITG PLQAYIFMGPIYYQKLKHMV+DKMH
Sbjct: 967  PSGHADKVETISKTLVKHGFSYSGKDFIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMH 1026

Query: 484  ARASGPRMMLTRQPTEGRSRDGGLRLGEMERDCLIAYGASMMILERLMISSDQFEIQVCT 305
            AR SGPR+MLTRQPTEGR+R+GGLR+GEMERDCLIAYGASM+I ERLM+SSD FE+QVC 
Sbjct: 1027 ARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQVCR 1086

Query: 304  KCGLLGYYNHKLKMGFCSTCKSGEEIATMKLPYACKLLFQELQSMNIVPRLQLAEA 137
             CGLLGYYNHKLK+G CSTCK+G+ I+TMKLPYACKLLFQELQ+MN+VPRL+L EA
Sbjct: 1087 VCGLLGYYNHKLKIGICSTCKNGDNISTMKLPYACKLLFQELQAMNVVPRLKLTEA 1142


>gb|EOY19609.1| DNA-directed RNA polymerase isoform 1 [Theobroma cacao]
          Length = 1158

 Score = 1622 bits (4201), Expect = 0.0
 Identities = 803/1139 (70%), Positives = 944/1139 (82%), Gaps = 5/1139 (0%)
 Frame = -3

Query: 3538 NERNLAAPVKTAVDKFQLLPAFLKVRGLVKQHIDSFNFFVNHEIKKIIHAKANEKVISEN 3359
            +++ LAAP+K+AVDKFQLLP FLKVRGLVKQH+DSFN+FVN  IKKI+  +AN++++S  
Sbjct: 25   DKQKLAAPIKSAVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIKKIV--RANDRIVSGV 82

Query: 3358 NPNFYLKYLDIRVDRPCLEEDLLHVETTPHQCRLRDMTYAAPIKVDVEYTRGNE-IVVRK 3182
            +P+ YL++ D+R+  P +  + +  +  PH CRL DMTYAAPI V++EY +G+     R 
Sbjct: 83   DPSIYLRFKDVRIGEPSMTINAVSEKINPHTCRLSDMTYAAPIFVNIEYIQGSHGQKTRL 142

Query: 3181 GKGAITIGRLPIMLRSCQCILTGKSETELAKLGECPLDPGGYFVVKGTEKVILIQEQLSK 3002
             K  + IGR+PIMLRSC C+L GK E ELA+LGECPLDPGGYFV+KG EKVILIQEQLSK
Sbjct: 143  EKNDLVIGRMPIMLRSCCCVLYGKDEAELARLGECPLDPGGYFVIKGAEKVILIQEQLSK 202

Query: 3001 NRILIDTDSKGXXXXXXXXXTHEKKSKTIIIVKHEIFYLKLNTFTEDVPIVIVVKAMGIE 2822
            NRI+ID D KG         +   KSKT+I ++ E  YL LN F + +PI++V+KAMG+E
Sbjct: 203  NRIIIDADKKGNINASVTSSSEATKSKTVIQMEKEKIYLLLNQFVKKIPIMVVMKAMGME 262

Query: 2821 SDQEFVQMVGRDPRFGGILAPSLQNCASYGIYTKELALEYLGTKVKSMRFGNEKSERSKV 2642
            SDQE VQMVGRDP +  +L PS++ CA  GIYT+E ALEYL TKVK + +    SE  K 
Sbjct: 263  SDQEVVQMVGRDPHYNAVLLPSIEECAGVGIYTQEQALEYLETKVKRVMYTGPASE--KE 320

Query: 2641 DEARDILHNVFLANVPVHKFDFRPKCIYVAVMLRRMIEAMLNPEAVDDKDYVGNKRLELA 2462
              A  IL +VFLANVPV   +FRPKC+YVAVMLRRM+EA+LN +A+DDKDYVGNKRLEL+
Sbjct: 321  GRALSILRDVFLANVPVRSNNFRPKCLYVAVMLRRMVEAILNKDAMDDKDYVGNKRLELS 380

Query: 2461 GVLIALLFEDLFKRMNQEIKSHVDKTFSK-QRSTMFDVAKAIPPH-IISYGLEHAISSGN 2288
            G LI+LLFEDLFK    E++  +D   SK  RS+  D ++ +     I++GLE  +S+GN
Sbjct: 381  GQLISLLFEDLFKTTISEVQKMIDLVLSKPSRSSALDPSQFLRSRETITFGLERTLSTGN 440

Query: 2287 WNVKRFKMDRKGVTQVVSRLSYIASLGHMTRIQSQFEKTRKVSGPRALQSSQWGMLCPCD 2108
            +++KRFKM RKG+TQV++RLS+I +LG+MT++  QFEK+RKVSGPRALQ SQWGMLCPCD
Sbjct: 441  FDIKRFKMHRKGMTQVLARLSFIGTLGYMTKVSPQFEKSRKVSGPRALQPSQWGMLCPCD 500

Query: 2107 TPEGEACGLVKNLALMTHVTTDEEEAPLITLCHTLGVEDLSLLSGEELHSRKAYLIIFNG 1928
            TPEGEACGLVKNLALMTHVTTDE+E PLI+LC+ LGVEDL LLSGEELH+  ++L+I NG
Sbjct: 501  TPEGEACGLVKNLALMTHVTTDEDEGPLISLCYCLGVEDLELLSGEELHTPNSFLVILNG 560

Query: 1927 LMLGIHRQPKRFAHFLRILRRAGKIGEFVSVFVNDKQRCVYVASDGGRVCRPLVIADNGI 1748
            L+LG HR+P+ FA  +R LRRAGK+GEFVSVFVN+KQRCVY+ASDGGRVCRPLVIAD G+
Sbjct: 561  LILGKHRRPQHFAVAMRKLRRAGKVGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGV 620

Query: 1747 SRIKEHHMKELRDGFRTFDDFLREGLVEYLDVNEENNALIALYESEATESTSHIEIEPFT 1568
            SRIKEHHMKEL DG RTFDDFLR+GL+EYLDVNEENNALIALYE EAT  T+HIEIEPFT
Sbjct: 621  SRIKEHHMKELLDGVRTFDDFLRDGLIEYLDVNEENNALIALYEGEATPETTHIEIEPFT 680

Query: 1567 ILGVCAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAYNQLCRMDTLLYLLVYPQRPLLTTK 1388
            ILGVCAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAYNQLCRMDTLLYLLVYPQRPLLTT+
Sbjct: 681  ILGVCAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAYNQLCRMDTLLYLLVYPQRPLLTTR 740

Query: 1387 TIELVKYDKLGAGQNATVAVMSYSGYDIEDAIVMNKASLDRGFGRCIVMKKYSAVLKKHP 1208
            TIELV YDKLGAGQNATVAVMSYSGYDIEDAIVMNK+SLDRGFGRCIVMK+YSAV +K+ 
Sbjct: 741  TIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVMKRYSAVNQKYE 800

Query: 1207 NRTQDRIIGPTSSSGRVDTRCQALDNDGIAAPGEIIRNHDIYINKQTPTKTREEVKNPMA 1028
                DRI+ P   +G    R Q LD+DGIA PGEIIR +DIYINK++   TR    +  +
Sbjct: 801  TGASDRILRP-QRTGPGSERMQILDDDGIATPGEIIRPNDIYINKESSIHTRGSRVSSES 859

Query: 1027 LPDSEYKFTPQTYKAP--EPSVVDKVVLTSNEEDALNIKFLFRQTRRPELGDKFSSRHGQ 854
            LPDS Y+   QTYK P  E  VVD+V L ++    L+IKFL R TRRPE+GDKFSSRHGQ
Sbjct: 860  LPDSAYRPARQTYKGPEGESCVVDRVALCTDRNSNLSIKFLIRHTRRPEVGDKFSSRHGQ 919

Query: 853  KGVCGNIVQQEDFPFSERGICPDLIMNPHGFPSRMTIGKMIELLGGKAGVCCGKFHYGSA 674
            KGVCG I+QQEDFPFSERGICPDLIMNPHGFPSRMT+GKMIELLGGKAGV CG+FHYGSA
Sbjct: 920  KGVCGTIIQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSA 979

Query: 673  FGEPSGHADKVETICATLVKHGFCYSGKDLIYSGITGYPLQAYIFMGPIYYQKLKHMVVD 494
            FGEPSGHAD+VE I  TL+KHGF Y+GKD IYSGITG PLQAYIFMGPIYYQKLKHMV+D
Sbjct: 980  FGEPSGHADRVEAISETLIKHGFSYNGKDFIYSGITGCPLQAYIFMGPIYYQKLKHMVLD 1039

Query: 493  KMHARASGPRMMLTRQPTEGRSRDGGLRLGEMERDCLIAYGASMMILERLMISSDQFEIQ 314
            KMHAR +GPR+MLTRQPTEGR+R+GGLR+GEMERDCLIAYGASM+I ERLMISSD FE+Q
Sbjct: 1040 KMHARGNGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMISSDPFEVQ 1099

Query: 313  VCTKCGLLGYYNHKLKMGFCSTCKSGEEIATMKLPYACKLLFQELQSMNIVPRLQLAEA 137
            VC KCGLLGYY+HKLK G CS+CK+G+ ++TMKLPYACKLL QELQSMNIVPRL+L+EA
Sbjct: 1100 VCRKCGLLGYYSHKLKTGICSSCKNGDNVSTMKLPYACKLLIQELQSMNIVPRLKLSEA 1158


>ref|XP_004249732.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2-like [Solanum
            lycopersicum]
          Length = 1183

 Score = 1617 bits (4186), Expect = 0.0
 Identities = 807/1155 (69%), Positives = 941/1155 (81%), Gaps = 5/1155 (0%)
 Frame = -3

Query: 3586 WQKSFSTMEDDEVDYENERNLAAPVKTAVDKFQLLPAFLKVRGLVKQHIDSFNFFVNHEI 3407
            +  + S   +D     ++++LA+ +K  VDK+QL+P FLKVRGLVKQH+DSFN+FV  EI
Sbjct: 33   YDSTMSNTTEDSNQGIDKQHLASHIKNLVDKYQLVPEFLKVRGLVKQHLDSFNYFVRTEI 92

Query: 3406 KKIIHAKANEKVISENNPNFYLKYLDIRVDRPCLEEDLLHVETTPHQCRLRDMTYAAPIK 3227
            KKI+  +AN+++ S  +PN YL+Y D+ +  P +  D +  +  P +CRL D TYAAPI 
Sbjct: 93   KKIV--RANQEIRSTLDPNIYLRYRDVHIGEPSMVFDAVTEKLCPQKCRLSDRTYAAPIY 150

Query: 3226 VDVEYTRGN--EIVVRKGKGAITIGRLPIMLRSCQCILTGKSETELAKLGECPLDPGGYF 3053
            V ++YT G+  +  V   K  I IGR+PIMLRS  C+L GK E ELA+LGECPLDPGGYF
Sbjct: 151  VTIDYTTGSHGQTSVSTKKNVI-IGRMPIMLRSSCCVLYGKDEDELARLGECPLDPGGYF 209

Query: 3052 VVKGTEKVILIQEQLSKNRILIDTDSKGXXXXXXXXXTHEKKSKTIIIVKHEIFYLKLNT 2873
            V+KGTEKVILIQEQLSKNRI+IDTD KG         T + KSKTII ++ E  YL+LN 
Sbjct: 210  VIKGTEKVILIQEQLSKNRIIIDTDKKGSVQASVTSSTEKTKSKTIIKMEKEKVYLELNM 269

Query: 2872 FTEDVPIVIVVKAMGIESDQEFVQMVGRDPRFGGILAPSLQNCASYGIYTKELALEYLGT 2693
            F   VPI++V+KAMG+ESDQE VQM+GRDPRF  +L PS++ CA   +YT++ ALE+L +
Sbjct: 270  FKTKVPIMVVMKAMGMESDQEVVQMIGRDPRFSALLLPSIEECADLKLYTQQQALEFLES 329

Query: 2692 KVKSMRFGNEKSERSKVDEARDILHNVFLANVPVHKFDFRPKCIYVAVMLRRMIEAMLNP 2513
                           K   A  IL ++FLANVPVH+ +FR KCIYVAVM+RRM+EA+LN 
Sbjct: 330  DKMLKMPSYSTGPIEKGARALSILRDIFLANVPVHQHNFRKKCIYVAVMMRRMMEAILNK 389

Query: 2512 EAVDDKDYVGNKRLELAGVLIALLFEDLFKRMNQEIKSHVDKTFSK-QRSTMFDVAKAIP 2336
            +A+DDKDYVGNKRLEL+G L++LLFEDLFK MN E +  +D   ++  RS+  D+++ I 
Sbjct: 390  DAMDDKDYVGNKRLELSGQLLSLLFEDLFKTMNDEARRTIDTLLARPSRSSRLDISQYII 449

Query: 2335 PHIISYGLEHAISSGNWNVKRFKMDRKGVTQVVSRLSYIASLGHMTRIQSQFEKTRKVSG 2156
               I+ GLE  +S+GNW+VKRF+M RKG+TQVV+RLSYI SLGHMT+I  QFEK+RKVSG
Sbjct: 450  KDSITMGLERTLSTGNWDVKRFRMHRKGMTQVVARLSYIGSLGHMTKISPQFEKSRKVSG 509

Query: 2155 PRALQSSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEAPLITLCHTLGVEDLSLLS 1976
            PRALQ SQ+GMLCPCDTPEGEACGLVKNLALMTHVTTDE+E P+++LC+ LGVEDL  LS
Sbjct: 510  PRALQPSQFGMLCPCDTPEGEACGLVKNLALMTHVTTDEDERPIMSLCYCLGVEDLEQLS 569

Query: 1975 GEELHSRKAYLIIFNGLMLGIHRQPKRFAHFLRILRRAGKIGEFVSVFVNDKQRCVYVAS 1796
             EELH   +YLI  NGL+LG H+ P+RFA+ +R LRRAGK+GEFVS+FVN+KQRCVY+AS
Sbjct: 570  PEELHMPTSYLITLNGLILGKHKSPQRFANAMRRLRRAGKVGEFVSIFVNEKQRCVYIAS 629

Query: 1795 DGGRVCRPLVIADNGISRIKEHHMKELRDGFRTFDDFLREGLVEYLDVNEENNALIALYE 1616
            DGGRVCRPLVIAD G+SRIKEHHM+ELRDG R FD FL++GL+EYLDVNEENN LIALYE
Sbjct: 630  DGGRVCRPLVIADKGVSRIKEHHMRELRDGLRDFDSFLKDGLIEYLDVNEENNTLIALYE 689

Query: 1615 SEATESTSHIEIEPFTILGVCAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAYNQLCRMDT 1436
             EAT  T+HIEIEPFTILGVCAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAYNQL RMD 
Sbjct: 690  KEATPETTHIEIEPFTILGVCAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAYNQLNRMDG 749

Query: 1435 LLYLLVYPQRPLLTTKTIELVKYDKLGAGQNATVAVMSYSGYDIEDAIVMNKASLDRGFG 1256
            LLYLLVYPQRPLLTT+TIELV YDKLGAGQNATVAVMSYSGYDIEDAIVMNK+SLDRGFG
Sbjct: 750  LLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFG 809

Query: 1255 RCIVMKKYSAVLKKHPNRTQDRIIGPTSSSGRVDTRCQALDNDGIAAPGEIIRNHDIYIN 1076
            RCIVMKKYSA+ +K+ N T DRII P       D R Q LD+DG+AAPGE IRNHDIYIN
Sbjct: 810  RCIVMKKYSAICQKYENGTSDRIIKPQRQGPEAD-RMQILDDDGMAAPGETIRNHDIYIN 868

Query: 1075 KQTPTKTREEVKNPMALPDSEYKFTPQTYKAP--EPSVVDKVVLTSNEEDALNIKFLFRQ 902
            K++PT TR  V +PM LPDS YK + QTYK P  E +VVD+V L S+  + L+IKF+ R 
Sbjct: 869  KESPTVTRTPVTSPMGLPDSAYKSSKQTYKGPEGETAVVDRVALYSDRNNNLSIKFMIRH 928

Query: 901  TRRPELGDKFSSRHGQKGVCGNIVQQEDFPFSERGICPDLIMNPHGFPSRMTIGKMIELL 722
            TRRPELGDKFSSRHGQKGVCG IVQQEDFPFSERGICPDLIMNPHGFPSRMT+GKMIELL
Sbjct: 929  TRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELL 988

Query: 721  GGKAGVCCGKFHYGSAFGEPSGHADKVETICATLVKHGFCYSGKDLIYSGITGYPLQAYI 542
            G KAGV CG+FHYGSAFGEPSGHAD V+ I  TLVKHGF Y+GKD IYSGITG PLQAYI
Sbjct: 989  GSKAGVSCGRFHYGSAFGEPSGHADTVDAISETLVKHGFSYNGKDFIYSGITGMPLQAYI 1048

Query: 541  FMGPIYYQKLKHMVVDKMHARASGPRMMLTRQPTEGRSRDGGLRLGEMERDCLIAYGASM 362
            FMGPIYYQKLKHMVVDKMHAR SGPR+M+TRQPTEGRSR+GGLR+GEMERDCLIAYGASM
Sbjct: 1049 FMGPIYYQKLKHMVVDKMHARGSGPRVMMTRQPTEGRSRNGGLRVGEMERDCLIAYGASM 1108

Query: 361  MILERLMISSDQFEIQVCTKCGLLGYYNHKLKMGFCSTCKSGEEIATMKLPYACKLLFQE 182
            +I ERLMISSD FE+QVC KCGLLGYYN+KLK G CS CK+GE I+TMKLPYACKLLFQE
Sbjct: 1109 LIYERLMISSDPFEVQVCRKCGLLGYYNYKLKTGICSMCKNGENISTMKLPYACKLLFQE 1168

Query: 181  LQSMNIVPRLQLAEA 137
            LQSMNIVPRL+LAEA
Sbjct: 1169 LQSMNIVPRLKLAEA 1183


>ref|XP_006362214.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2-like isoform
            X1 [Solanum tuberosum] gi|565393087|ref|XP_006362215.1|
            PREDICTED: DNA-directed RNA polymerase III subunit
            RPC2-like isoform X2 [Solanum tuberosum]
          Length = 1153

 Score = 1616 bits (4185), Expect = 0.0
 Identities = 806/1155 (69%), Positives = 942/1155 (81%), Gaps = 5/1155 (0%)
 Frame = -3

Query: 3586 WQKSFSTMEDDEVDYENERNLAAPVKTAVDKFQLLPAFLKVRGLVKQHIDSFNFFVNHEI 3407
            +  + S   +D     ++++LA+P+K  VDK+QL+P FLKVRGLVKQH+DSFN+FV  EI
Sbjct: 3    YDSTMSNTTEDSNQGIDKQHLASPIKNLVDKYQLVPEFLKVRGLVKQHLDSFNYFVRTEI 62

Query: 3406 KKIIHAKANEKVISENNPNFYLKYLDIRVDRPCLEEDLLHVETTPHQCRLRDMTYAAPIK 3227
            KKI+  +AN+++ S  +PN YL+Y D+ +  P +  D +  +  P +CRL D TYAAPI 
Sbjct: 63   KKIV--RANQEIRSILDPNIYLRYRDVHIGEPSMVFDAVTEKLCPQKCRLSDRTYAAPIY 120

Query: 3226 VDVEYTRGN--EIVVRKGKGAITIGRLPIMLRSCQCILTGKSETELAKLGECPLDPGGYF 3053
            V +EYT G+  +  V   K  I IGR+PIMLRS  C+L GK E ELA+LGECPLDPGGYF
Sbjct: 121  VTIEYTTGSHGQTSVSTKKNVI-IGRMPIMLRSSCCVLYGKDEDELARLGECPLDPGGYF 179

Query: 3052 VVKGTEKVILIQEQLSKNRILIDTDSKGXXXXXXXXXTHEKKSKTIIIVKHEIFYLKLNT 2873
            V+KGTEKVILIQEQLSKNRI+IDTD KG         T + KSKTII ++ E  YL+LN 
Sbjct: 180  VIKGTEKVILIQEQLSKNRIIIDTDKKGSVQASVTSSTEKTKSKTIIKMEKEKVYLELNM 239

Query: 2872 FTEDVPIVIVVKAMGIESDQEFVQMVGRDPRFGGILAPSLQNCASYGIYTKELALEYLGT 2693
            F   VPI++V+KAMG+ESDQE VQM+GRDPRF  +L PS++ CA   +YT+  ALE+L +
Sbjct: 240  FKTKVPIMVVMKAMGMESDQEVVQMIGRDPRFSALLLPSIEECADLKLYTQHQALEFLES 299

Query: 2692 KVKSMRFGNEKSERSKVDEARDILHNVFLANVPVHKFDFRPKCIYVAVMLRRMIEAMLNP 2513
                           K   A  IL ++FLANVPVH+ +FR KCIYVAVM+RRM+EA+LN 
Sbjct: 300  DKMLKMPSYSTGPVEKGARALSILRDIFLANVPVHQHNFRKKCIYVAVMMRRMMEAILNK 359

Query: 2512 EAVDDKDYVGNKRLELAGVLIALLFEDLFKRMNQEIKSHVDKTFSK-QRSTMFDVAKAIP 2336
            +A+DDKDYVGNKRLEL+G L++LLFEDLFK MN E +  +D   ++  RS+  D+++ I 
Sbjct: 360  DAMDDKDYVGNKRLELSGQLLSLLFEDLFKTMNDEARRTIDTLLARPSRSSRLDISQYIV 419

Query: 2335 PHIISYGLEHAISSGNWNVKRFKMDRKGVTQVVSRLSYIASLGHMTRIQSQFEKTRKVSG 2156
               I+ GLE  +S+GNW+VKRF+M RKG+TQVV+RLSYI SLGHMT+I  QFEK+RKVSG
Sbjct: 420  KDSITMGLERTLSTGNWDVKRFRMHRKGMTQVVARLSYIGSLGHMTKISPQFEKSRKVSG 479

Query: 2155 PRALQSSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEAPLITLCHTLGVEDLSLLS 1976
            PRALQ SQ+GMLCPCDTPEGEACGLVKNLALMTHVTTDE+E P+++LC+ LGVEDL  LS
Sbjct: 480  PRALQPSQFGMLCPCDTPEGEACGLVKNLALMTHVTTDEDERPIMSLCYCLGVEDLEQLS 539

Query: 1975 GEELHSRKAYLIIFNGLMLGIHRQPKRFAHFLRILRRAGKIGEFVSVFVNDKQRCVYVAS 1796
             EELH   +YLI  NGL+LG H+ P+RFA+ +R LRRAGKIGEFVS+FVN+KQRCVY+AS
Sbjct: 540  PEELHMPTSYLITLNGLILGKHKSPQRFANAMRRLRRAGKIGEFVSIFVNEKQRCVYIAS 599

Query: 1795 DGGRVCRPLVIADNGISRIKEHHMKELRDGFRTFDDFLREGLVEYLDVNEENNALIALYE 1616
            DGGRVCRPLVIAD G+SRIKEHHM+ELRDG R FD FL++GL+EYLDVNEENN LIALYE
Sbjct: 600  DGGRVCRPLVIADKGVSRIKEHHMRELRDGVRDFDSFLKDGLIEYLDVNEENNTLIALYE 659

Query: 1615 SEATESTSHIEIEPFTILGVCAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAYNQLCRMDT 1436
             EAT  T+HIEIEPFTILGVCAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAYNQL RMD 
Sbjct: 660  KEATPETTHIEIEPFTILGVCAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAYNQLNRMDG 719

Query: 1435 LLYLLVYPQRPLLTTKTIELVKYDKLGAGQNATVAVMSYSGYDIEDAIVMNKASLDRGFG 1256
            LLYLLVYPQRPLLTT+TIELV YDKLGAGQNATVAVMSYSGYDIEDAIVMNK+SLDRGFG
Sbjct: 720  LLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFG 779

Query: 1255 RCIVMKKYSAVLKKHPNRTQDRIIGPTSSSGRVDTRCQALDNDGIAAPGEIIRNHDIYIN 1076
            RCIVMKKYSA+ +K+ N T DRII P       D + Q LD+DG+AAPGE IRNHDIYIN
Sbjct: 780  RCIVMKKYSAICQKYENGTSDRIIKPQRQGFEAD-KMQILDDDGMAAPGETIRNHDIYIN 838

Query: 1075 KQTPTKTREEVKNPMALPDSEYKFTPQTYKAP--EPSVVDKVVLTSNEEDALNIKFLFRQ 902
            K++PT TR  + +PM LPDS YK + QTYK P  E +VVD+V L S+  + L+IKF+ R 
Sbjct: 839  KESPTVTRTPITSPMGLPDSAYKTSRQTYKGPEGETAVVDRVALYSDRNNNLSIKFMIRH 898

Query: 901  TRRPELGDKFSSRHGQKGVCGNIVQQEDFPFSERGICPDLIMNPHGFPSRMTIGKMIELL 722
            TRRPE+GDKFSSRHGQKGVCG IVQQEDFPFSERGICPDLIMNPHGFPSRMT+GKMIELL
Sbjct: 899  TRRPEIGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELL 958

Query: 721  GGKAGVCCGKFHYGSAFGEPSGHADKVETICATLVKHGFCYSGKDLIYSGITGYPLQAYI 542
            G KAGV CG+FHYGSAFGEPSGHAD V++I  TLVKHGF Y+GKD IYSGITG PLQAYI
Sbjct: 959  GSKAGVSCGRFHYGSAFGEPSGHADTVDSISETLVKHGFSYNGKDFIYSGITGMPLQAYI 1018

Query: 541  FMGPIYYQKLKHMVVDKMHARASGPRMMLTRQPTEGRSRDGGLRLGEMERDCLIAYGASM 362
            FMGPIYYQKLKHMV+DKMHAR SGPR+M+TRQPTEGRSR+GGLR+GEMERDCLIAYGASM
Sbjct: 1019 FMGPIYYQKLKHMVLDKMHARGSGPRVMMTRQPTEGRSRNGGLRVGEMERDCLIAYGASM 1078

Query: 361  MILERLMISSDQFEIQVCTKCGLLGYYNHKLKMGFCSTCKSGEEIATMKLPYACKLLFQE 182
            +I ERLMISSD FE+QVC KCGLLGYYN+KLK G CS CK+GE I+TMKLPYACKLLFQE
Sbjct: 1079 LIYERLMISSDPFEVQVCRKCGLLGYYNYKLKTGICSMCKNGENISTMKLPYACKLLFQE 1138

Query: 181  LQSMNIVPRLQLAEA 137
            LQSMNIVPRL+LAEA
Sbjct: 1139 LQSMNIVPRLKLAEA 1153


>ref|XP_004141655.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2-like [Cucumis
            sativus]
          Length = 1158

 Score = 1612 bits (4174), Expect = 0.0
 Identities = 804/1147 (70%), Positives = 951/1147 (82%), Gaps = 6/1147 (0%)
 Frame = -3

Query: 3559 DDEVDYENERNLAAPVKTAVDKFQLLPAFLKVRGLVKQHIDSFNFFVNHEIKKIIHAKAN 3380
            D ++D   ++ +  P+K+AVDKFQLLP FLKVRGLVKQH+DSFN+FVN EIKKI+  KAN
Sbjct: 23   DSDID---KQFIGLPIKSAVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTEIKKIV--KAN 77

Query: 3379 EKVISENNPNFYLKYLDIRVDRPCLEEDLLHVETTPHQCRLRDMTYAAPIKVDVEYTRGN 3200
            +++ S  +P+ YL++LD+R+  P +  + +     PH CRL D+TYAAPI VD+EY   +
Sbjct: 78   DRIESSTDPSIYLRFLDVRIGEPSVTVNAVSETINPHMCRLSDLTYAAPILVDIEYIEES 137

Query: 3199 EIV-VRKGKGAITIGRLPIMLRSCQCILTGKSETELAKLGECPLDPGGYFVVKGTEKVIL 3023
                  + K  + IGR+PIMLRS  C+L GK E ELA+LGECPLDPGGYF++KGTEKV+L
Sbjct: 138  HAQKAPREKKDVVIGRMPIMLRSRCCVLHGKDEAELARLGECPLDPGGYFIIKGTEKVVL 197

Query: 3022 IQEQLSKNRILIDTDSKGXXXXXXXXXTHEKKSKTIIIVKHEIFYLKLNTFTED-VPIVI 2846
            IQEQLSKNRI+IDTD KG         T   KSKT+I +++E  YL+LN FT   +PI++
Sbjct: 198  IQEQLSKNRIIIDTDKKGNINASVTSSTEATKSKTVIKMENEKIYLQLNIFTTPKIPIMV 257

Query: 2845 VVKAMGIESDQEFVQMVGRDPRFGGILAPSLQNCASYGIYTKELALEYLGTKVKSMRFGN 2666
            V+KAMG+ES QE VQMVGRDPR+G +L PS++ CA   IYT+E ALEYL TKVK  +F +
Sbjct: 258  VLKAMGMESIQEVVQMVGRDPRYGALLLPSIEECAKEKIYTQEQALEYLETKVKKFQFAS 317

Query: 2665 EKSERSKVDEARDILHNVFLANVPVHKFDFRPKCIYVAVMLRRMIEAMLNPEAVDDKDYV 2486
               E  K   A  IL +VFLANVPV+K +F PKCIYVAVM+RRM++A+L+ +A+DDKDYV
Sbjct: 318  APPE--KEGRALGILRDVFLANVPVYKNNFHPKCIYVAVMMRRMMDAILSKDAMDDKDYV 375

Query: 2485 GNKRLELAGVLIALLFEDLFKRMNQEIKSHVDKTFSKQ-RSTMFDVAKAIPPHIISYGLE 2309
            GNKRLEL+G LI+LLFEDLFK M  E+K  +DK   K  RS+ FD ++ +  +IIS+GLE
Sbjct: 376  GNKRLELSGQLISLLFEDLFKTMVSEVKKTIDKLLGKHSRSSRFDFSQHLNSNIISFGLE 435

Query: 2308 HAISSGNWNVKRFKMDRKGVTQVVSRLSYIASLGHMTRIQSQFEKTRKVSGPRALQSSQW 2129
              +S+GNW+VKRF+M RKG++QV++RLS+I+++GH+TR+  QFEK+RKVSGPRALQ SQW
Sbjct: 436  RTLSTGNWDVKRFRMHRKGMSQVLARLSFISTMGHVTRVSPQFEKSRKVSGPRALQPSQW 495

Query: 2128 GMLCPCDTPEGEACGLVKNLALMTHVTTDEEEAPLITLCHTLGVEDLSLLSGEELHSRKA 1949
            GMLCPCDTPEGEACGLVKNLALMTHVTTD+EE PLI+LC+ LGVEDL LLS EELH+  +
Sbjct: 496  GMLCPCDTPEGEACGLVKNLALMTHVTTDQEEGPLISLCYCLGVEDLELLSAEELHTPNS 555

Query: 1948 YLIIFNGLMLGIHRQPKRFAHFLRILRRAGKIGEFVSVFVNDKQRCVYVASDGGRVCRPL 1769
            +L+IFNG +LG HR+P+ FA  +R+LRRAGKIGEFVSVFVN+KQ CVY+ASDGGRVCRPL
Sbjct: 556  FLVIFNGRILGKHRRPQYFATGMRMLRRAGKIGEFVSVFVNEKQHCVYIASDGGRVCRPL 615

Query: 1768 VIADNGISRIKEHHMKELRDGFRTFDDFLREGLVEYLDVNEENNALIALYESEATESTSH 1589
            VIAD G+SRIKE+HMKEL DG RTFDDFLR+GL+EYLDVNEENNALIALYE EAT  T+H
Sbjct: 616  VIADKGVSRIKEYHMKELSDGVRTFDDFLRDGLIEYLDVNEENNALIALYEGEATPETTH 675

Query: 1588 IEIEPFTILGVCAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAYNQLCRMDTLLYLLVYPQ 1409
            IEIEPFTILGV AGLIPYPHHNQSPRNTYQCAMGKQAMGNIAYNQL RMDTLLYLLVYPQ
Sbjct: 676  IEIEPFTILGVVAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAYNQLRRMDTLLYLLVYPQ 735

Query: 1408 RPLLTTKTIELVKYDKLGAGQNATVAVMSYSGYDIEDAIVMNKASLDRGFGRCIVMKKYS 1229
            RPLLTTKTIELV YDKLGAGQNATVAVMSYSGYDIEDAIVMNK+SLDRGFGRCIV KKYS
Sbjct: 736  RPLLTTKTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVFKKYS 795

Query: 1228 AVLKKHPNRTQDRIIGPTSSSGRVDTRCQALDNDGIAAPGEIIRNHDIYINKQTPTKTRE 1049
            +V +K+ N T DRI+ P  +        Q LD+DG+AAPGEIIR +DIY+NKQ+P   + 
Sbjct: 796  SVNQKYENNTADRIVRPNRNED-FTGNMQILDDDGLAAPGEIIRPNDIYVNKQSPIIMK- 853

Query: 1048 EVKNPM-ALPDSEYKFTPQTYKAP--EPSVVDKVVLTSNEEDALNIKFLFRQTRRPELGD 878
               +P+  +PD+ Y+   Q +K    EP+VVD+V L++++ D L IKFL RQTRRPELGD
Sbjct: 854  --GSPLPGIPDNAYRPCRQIFKGSEGEPTVVDRVALSTDKNDCLCIKFLIRQTRRPELGD 911

Query: 877  KFSSRHGQKGVCGNIVQQEDFPFSERGICPDLIMNPHGFPSRMTIGKMIELLGGKAGVCC 698
            KFSSRHGQKGVCG IVQQEDFPFSERGICPDLIMNPHGFPSRMT+GKMIELLGGKAGV C
Sbjct: 912  KFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSC 971

Query: 697  GKFHYGSAFGEPSGHADKVETICATLVKHGFCYSGKDLIYSGITGYPLQAYIFMGPIYYQ 518
            G+FHYGSAFGEPSGHADKV+ I  TL+K GF Y+GKD +YSGITG PLQAYIFMGPIYYQ
Sbjct: 972  GRFHYGSAFGEPSGHADKVDAISETLIKRGFSYNGKDFLYSGITGCPLQAYIFMGPIYYQ 1031

Query: 517  KLKHMVVDKMHARASGPRMMLTRQPTEGRSRDGGLRLGEMERDCLIAYGASMMILERLMI 338
            KLKHMV+DKMHAR SGPR+MLTRQPTEGR+R+GGLR+GEMERDCLIAYGASM+I ERLMI
Sbjct: 1032 KLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIYERLMI 1091

Query: 337  SSDQFEIQVCTKCGLLGYYNHKLKMGFCSTCKSGEEIATMKLPYACKLLFQELQSMNIVP 158
            SSD FE+QVC  CGLLGYYNHKLK G CS+CK+G+ I+TMKLPYACKLL QELQSMNIVP
Sbjct: 1092 SSDPFEVQVCRVCGLLGYYNHKLKTGICSSCKNGDNISTMKLPYACKLLIQELQSMNIVP 1151

Query: 157  RLQLAEA 137
            RL+LAEA
Sbjct: 1152 RLKLAEA 1158


>gb|EOY19611.1| DNA-directed RNA polymerase isoform 3 [Theobroma cacao]
          Length = 1153

 Score = 1608 bits (4164), Expect = 0.0
 Identities = 798/1139 (70%), Positives = 939/1139 (82%), Gaps = 5/1139 (0%)
 Frame = -3

Query: 3538 NERNLAAPVKTAVDKFQLLPAFLKVRGLVKQHIDSFNFFVNHEIKKIIHAKANEKVISEN 3359
            +++ LAAP+K+AVDKFQLLP FLKVRGLVKQH+DSFN+FVN  IKKI+  +AN++++S  
Sbjct: 25   DKQKLAAPIKSAVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIKKIV--RANDRIVSGV 82

Query: 3358 NPNFYLKYLDIRVDRPCLEEDLLHVETTPHQCRLRDMTYAAPIKVDVEYTRGNE-IVVRK 3182
            +P+ YL++ D+R+  P +  + +  +  PH CRL DMTYAAPI V++EY +G+     R 
Sbjct: 83   DPSIYLRFKDVRIGEPSMTINAVSEKINPHTCRLSDMTYAAPIFVNIEYIQGSHGQKTRL 142

Query: 3181 GKGAITIGRLPIMLRSCQCILTGKSETELAKLGECPLDPGGYFVVKGTEKVILIQEQLSK 3002
             K  + IGR+PIMLRSC C+L GK E ELA+LGECPLDPGGYFV+KG EK     EQLSK
Sbjct: 143  EKNDLVIGRMPIMLRSCCCVLYGKDEAELARLGECPLDPGGYFVIKGAEK-----EQLSK 197

Query: 3001 NRILIDTDSKGXXXXXXXXXTHEKKSKTIIIVKHEIFYLKLNTFTEDVPIVIVVKAMGIE 2822
            NRI+ID D KG         +   KSKT+I ++ E  YL LN F + +PI++V+KAMG+E
Sbjct: 198  NRIIIDADKKGNINASVTSSSEATKSKTVIQMEKEKIYLLLNQFVKKIPIMVVMKAMGME 257

Query: 2821 SDQEFVQMVGRDPRFGGILAPSLQNCASYGIYTKELALEYLGTKVKSMRFGNEKSERSKV 2642
            SDQE VQMVGRDP +  +L PS++ CA  GIYT+E ALEYL TKVK + +    SE  K 
Sbjct: 258  SDQEVVQMVGRDPHYNAVLLPSIEECAGVGIYTQEQALEYLETKVKRVMYTGPASE--KE 315

Query: 2641 DEARDILHNVFLANVPVHKFDFRPKCIYVAVMLRRMIEAMLNPEAVDDKDYVGNKRLELA 2462
              A  IL +VFLANVPV   +FRPKC+YVAVMLRRM+EA+LN +A+DDKDYVGNKRLEL+
Sbjct: 316  GRALSILRDVFLANVPVRSNNFRPKCLYVAVMLRRMVEAILNKDAMDDKDYVGNKRLELS 375

Query: 2461 GVLIALLFEDLFKRMNQEIKSHVDKTFSK-QRSTMFDVAKAIPPH-IISYGLEHAISSGN 2288
            G LI+LLFEDLFK    E++  +D   SK  RS+  D ++ +     I++GLE  +S+GN
Sbjct: 376  GQLISLLFEDLFKTTISEVQKMIDLVLSKPSRSSALDPSQFLRSRETITFGLERTLSTGN 435

Query: 2287 WNVKRFKMDRKGVTQVVSRLSYIASLGHMTRIQSQFEKTRKVSGPRALQSSQWGMLCPCD 2108
            +++KRFKM RKG+TQV++RLS+I +LG+MT++  QFEK+RKVSGPRALQ SQWGMLCPCD
Sbjct: 436  FDIKRFKMHRKGMTQVLARLSFIGTLGYMTKVSPQFEKSRKVSGPRALQPSQWGMLCPCD 495

Query: 2107 TPEGEACGLVKNLALMTHVTTDEEEAPLITLCHTLGVEDLSLLSGEELHSRKAYLIIFNG 1928
            TPEGEACGLVKNLALMTHVTTDE+E PLI+LC+ LGVEDL LLSGEELH+  ++L+I NG
Sbjct: 496  TPEGEACGLVKNLALMTHVTTDEDEGPLISLCYCLGVEDLELLSGEELHTPNSFLVILNG 555

Query: 1927 LMLGIHRQPKRFAHFLRILRRAGKIGEFVSVFVNDKQRCVYVASDGGRVCRPLVIADNGI 1748
            L+LG HR+P+ FA  +R LRRAGK+GEFVSVFVN+KQRCVY+ASDGGRVCRPLVIAD G+
Sbjct: 556  LILGKHRRPQHFAVAMRKLRRAGKVGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGV 615

Query: 1747 SRIKEHHMKELRDGFRTFDDFLREGLVEYLDVNEENNALIALYESEATESTSHIEIEPFT 1568
            SRIKEHHMKEL DG RTFDDFLR+GL+EYLDVNEENNALIALYE EAT  T+HIEIEPFT
Sbjct: 616  SRIKEHHMKELLDGVRTFDDFLRDGLIEYLDVNEENNALIALYEGEATPETTHIEIEPFT 675

Query: 1567 ILGVCAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAYNQLCRMDTLLYLLVYPQRPLLTTK 1388
            ILGVCAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAYNQLCRMDTLLYLLVYPQRPLLTT+
Sbjct: 676  ILGVCAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAYNQLCRMDTLLYLLVYPQRPLLTTR 735

Query: 1387 TIELVKYDKLGAGQNATVAVMSYSGYDIEDAIVMNKASLDRGFGRCIVMKKYSAVLKKHP 1208
            TIELV YDKLGAGQNATVAVMSYSGYDIEDAIVMNK+SLDRGFGRCIVMK+YSAV +K+ 
Sbjct: 736  TIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVMKRYSAVNQKYE 795

Query: 1207 NRTQDRIIGPTSSSGRVDTRCQALDNDGIAAPGEIIRNHDIYINKQTPTKTREEVKNPMA 1028
                DRI+ P   +G    R Q LD+DGIA PGEIIR +DIYINK++   TR    +  +
Sbjct: 796  TGASDRILRP-QRTGPGSERMQILDDDGIATPGEIIRPNDIYINKESSIHTRGSRVSSES 854

Query: 1027 LPDSEYKFTPQTYKAP--EPSVVDKVVLTSNEEDALNIKFLFRQTRRPELGDKFSSRHGQ 854
            LPDS Y+   QTYK P  E  VVD+V L ++    L+IKFL R TRRPE+GDKFSSRHGQ
Sbjct: 855  LPDSAYRPARQTYKGPEGESCVVDRVALCTDRNSNLSIKFLIRHTRRPEVGDKFSSRHGQ 914

Query: 853  KGVCGNIVQQEDFPFSERGICPDLIMNPHGFPSRMTIGKMIELLGGKAGVCCGKFHYGSA 674
            KGVCG I+QQEDFPFSERGICPDLIMNPHGFPSRMT+GKMIELLGGKAGV CG+FHYGSA
Sbjct: 915  KGVCGTIIQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSA 974

Query: 673  FGEPSGHADKVETICATLVKHGFCYSGKDLIYSGITGYPLQAYIFMGPIYYQKLKHMVVD 494
            FGEPSGHAD+VE I  TL+KHGF Y+GKD IYSGITG PLQAYIFMGPIYYQKLKHMV+D
Sbjct: 975  FGEPSGHADRVEAISETLIKHGFSYNGKDFIYSGITGCPLQAYIFMGPIYYQKLKHMVLD 1034

Query: 493  KMHARASGPRMMLTRQPTEGRSRDGGLRLGEMERDCLIAYGASMMILERLMISSDQFEIQ 314
            KMHAR +GPR+MLTRQPTEGR+R+GGLR+GEMERDCLIAYGASM+I ERLMISSD FE+Q
Sbjct: 1035 KMHARGNGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMISSDPFEVQ 1094

Query: 313  VCTKCGLLGYYNHKLKMGFCSTCKSGEEIATMKLPYACKLLFQELQSMNIVPRLQLAEA 137
            VC KCGLLGYY+HKLK G CS+CK+G+ ++TMKLPYACKLL QELQSMNIVPRL+L+EA
Sbjct: 1095 VCRKCGLLGYYSHKLKTGICSSCKNGDNVSTMKLPYACKLLIQELQSMNIVPRLKLSEA 1153


>ref|XP_002525541.1| DNA-directed RNA polymerase III subunit, putative [Ricinus communis]
            gi|223535120|gb|EEF36800.1| DNA-directed RNA polymerase
            III subunit, putative [Ricinus communis]
          Length = 1139

 Score = 1596 bits (4132), Expect = 0.0
 Identities = 801/1138 (70%), Positives = 933/1138 (81%), Gaps = 4/1138 (0%)
 Frame = -3

Query: 3538 NERNLAAPVKTAVDKFQLLPAFLKVRGLVKQHIDSFNFFVNHEIKKIIHAKANEKVISEN 3359
            +++ L AP+K+AVDKFQLLP FLKVRGLVKQH+DSFN+FVN  IKKI+  +AN++++S  
Sbjct: 23   DKQKLTAPIKSAVDKFQLLPEFLKVRGLVKQHLDSFNYFVNIGIKKIV--RANDRIVSTV 80

Query: 3358 NPNFYLKYLDIRVDRPCLEEDLLHVETTPHQCRLRDMTYAAPIKVDVEYTRGN-EIVVRK 3182
            +P  YL++ D+R+  P    D +  + +PH CRL D TYAAPI V+VEY  G+ +   R 
Sbjct: 81   DPGIYLRFKDVRIGTPSDIMDGVSEQLSPHMCRLSDKTYAAPILVNVEYIYGSHDQKTRV 140

Query: 3181 GKGAITIGRLPIMLRSCQCILTGKSETELAKLGECPLDPGGYFVVKGTEKVILIQEQLSK 3002
             K  + IGR+PIMLRS  C+L GK E ELA+LGECPLDPGGYFV+KGTEKVILIQEQLSK
Sbjct: 141  EKNDVVIGRMPIMLRSRSCVLYGKDEAELARLGECPLDPGGYFVIKGTEKVILIQEQLSK 200

Query: 3001 NRILIDTDSKGXXXXXXXXXTHEKKSKTIIIVKHEIFYLKLNTFTEDVPIVIVVKAMGIE 2822
            NRI+IDTD KG         T   KSKTII ++ E  YL LN F + +PI++V+KAMG+E
Sbjct: 201  NRIIIDTDKKGNINASVTSSTEATKSKTIIQMEKEKMYLCLNQFVKKIPIMVVIKAMGME 260

Query: 2821 SDQEFVQMVGRDPRFGGILAPSLQNCASYGIYTKELALEYLGTKVKSMRFGNEKSERSKV 2642
            SDQE VQMVGRDPR+  +L PS++ CA   IYT++ ALEYL                 K 
Sbjct: 261  SDQEVVQMVGRDPRYSALLLPSIEECAGLSIYTQQKALEYLD---------------GKE 305

Query: 2641 DEARDILHNVFLANVPVHKFDFRPKCIYVAVMLRRMIEAMLNPEAVDDKDYVGNKRLELA 2462
            + A  IL +VFLANVPVHK +FRPKC+YVAVMLRRM+EAMLN +A+DDKDYVGNKRLEL+
Sbjct: 306  NRALTILRDVFLANVPVHKNNFRPKCLYVAVMLRRMMEAMLNKDAMDDKDYVGNKRLELS 365

Query: 2461 GVLIALLFEDLFKRMNQEIKSHVDKTFSKQ-RSTMFDVAKAIPPHIISYGLEHAISSGNW 2285
            G LI+LLFEDLFK M  E++  +D   +KQ RS+ FD+A+ I    I+ GLE  +S+GN+
Sbjct: 366  GQLISLLFEDLFKTMITEVQRTIDTVLTKQNRSSRFDLAQYIVRDNITNGLERTLSTGNF 425

Query: 2284 NVKRFKMDRKGVTQVVSRLSYIASLGHMTRIQSQFEKTRKVSGPRALQSSQWGMLCPCDT 2105
            +VKRFKM RKG+TQV+ RLSYIASLG MTR+  QFEK+RKVSGPRALQ SQWGMLCPCDT
Sbjct: 426  DVKRFKMHRKGMTQVLVRLSYIASLGMMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDT 485

Query: 2104 PEGEACGLVKNLALMTHVTTDEEEAPLITLCHTLGVEDLSLLSGEELHSRKAYLIIFNGL 1925
            PEGEACGLVKNLALMTHVTTD+EE PLI+LC+ LGVEDL LLSGEELH+  ++L+IFNGL
Sbjct: 486  PEGEACGLVKNLALMTHVTTDDEEGPLISLCYCLGVEDLELLSGEELHTPNSFLVIFNGL 545

Query: 1924 MLGIHRQPKRFAHFLRILRRAGKIGEFVSVFVNDKQRCVYVASDGGRVCRPLVIADNGIS 1745
            +LG HR+P+ F + +R LRRAGKIGEFVSVFVN+KQR VY+ASDGGRVCRPLVIAD G+S
Sbjct: 546  ILGKHRRPQYFVNSMRKLRRAGKIGEFVSVFVNEKQRAVYLASDGGRVCRPLVIADRGVS 605

Query: 1744 RIKEHHMKELRDGFRTFDDFLREGLVEYLDVNEENNALIALYESEATESTSHIEIEPFTI 1565
            RIKEHHMKELRDG RTFDDFLR+GL+EYLDVNEENNAL+ALYE EAT  T+HIEIEPFTI
Sbjct: 606  RIKEHHMKELRDGVRTFDDFLRDGLIEYLDVNEENNALVALYEGEATPETTHIEIEPFTI 665

Query: 1564 LGVCAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAYNQLCRMDTLLYLLVYPQRPLLTTKT 1385
            LGVCAGLIP+PHHNQSPRNTYQCAMGKQAMGNIAYNQL RMD+LLYLLVYPQRPLLTT+T
Sbjct: 666  LGVCAGLIPFPHHNQSPRNTYQCAMGKQAMGNIAYNQLFRMDSLLYLLVYPQRPLLTTRT 725

Query: 1384 IELVKYDKLGAGQNATVAVMSYSGYDIEDAIVMNKASLDRGFGRCIVMKKYSAVLKKHPN 1205
            IELV YDKLGAGQNATVAVMSYSGYDIEDAIVMNKASLDRGFGRCIVMKKY A+ +K+ N
Sbjct: 726  IELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKASLDRGFGRCIVMKKYPAIRQKYEN 785

Query: 1204 RTQDRIIGPTSSSGRVDTRCQALDNDGIAAPGEIIRNHDIYINKQTPTKTREEVKNPMAL 1025
               DRI+ P     R   R + LD DG+AAPGEII+  DIY+ K+ P  T   VK+  AL
Sbjct: 786  GASDRILRP----DRTVERERVLDYDGLAAPGEIIKPSDIYVKKECPIDTMGPVKSSAAL 841

Query: 1024 PDSEYKFTPQTYKAP--EPSVVDKVVLTSNEEDALNIKFLFRQTRRPELGDKFSSRHGQK 851
             + +Y+ +P +YK P  E  V+D+V L+S+  + L IK + R TRRPE+GDKFSSRHGQK
Sbjct: 842  ENIKYRPSPLSYKGPEGESPVIDRVALSSDRNNNLCIKVMIRHTRRPEVGDKFSSRHGQK 901

Query: 850  GVCGNIVQQEDFPFSERGICPDLIMNPHGFPSRMTIGKMIELLGGKAGVCCGKFHYGSAF 671
            GVCG I+QQEDFPFSERGICPDLIMNPHGFPSRMT+GKMIELLGGKAGV CG+FHYGSAF
Sbjct: 902  GVCGTIIQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAF 961

Query: 670  GEPSGHADKVETICATLVKHGFCYSGKDLIYSGITGYPLQAYIFMGPIYYQKLKHMVVDK 491
            GEPSGHAD VE I  TLV  GF Y+GKD+IYSGITG PLQAYIFMGPIYYQKLKHMV+DK
Sbjct: 962  GEPSGHADTVEAISETLVNRGFSYNGKDIIYSGITGCPLQAYIFMGPIYYQKLKHMVLDK 1021

Query: 490  MHARASGPRMMLTRQPTEGRSRDGGLRLGEMERDCLIAYGASMMILERLMISSDQFEIQV 311
            MHAR +GPR+MLTRQPTEGR+R+GGLR+GEMERDCLIAYGASM+I ERLMISSD FE+QV
Sbjct: 1022 MHARGNGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMISSDPFEVQV 1081

Query: 310  CTKCGLLGYYNHKLKMGFCSTCKSGEEIATMKLPYACKLLFQELQSMNIVPRLQLAEA 137
            C  CGLLGY+N KL+ G CSTCK+G+ I+TMKLPYACKLL QELQSMNIVPRL+LAEA
Sbjct: 1082 CRVCGLLGYFNQKLRAGICSTCKNGDNISTMKLPYACKLLIQELQSMNIVPRLKLAEA 1139


>ref|XP_006583557.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc2-like isoform
            X1 [Glycine max]
          Length = 1165

 Score = 1593 bits (4125), Expect = 0.0
 Identities = 794/1139 (69%), Positives = 938/1139 (82%), Gaps = 5/1139 (0%)
 Frame = -3

Query: 3538 NERNLAAPVKTAVDKFQLLPAFLKVRGLVKQHIDSFNFFVNHEIKKIIHAKANEKVISEN 3359
            ++R L AP+K+AVDKFQLLP FLKVRGLVKQH+DSFN+FV  +IKKI+  +AN+ +++  
Sbjct: 32   DQRVLTAPIKSAVDKFQLLPEFLKVRGLVKQHLDSFNYFVRTDIKKIV--RANDLIVASR 89

Query: 3358 NPNFYLKYLDIRVDRPCLEEDLLHVETTPHQCRLRDMTYAAPIKVDVEYTRGNEIVVR-K 3182
             P+ YL++L++ + +P +  D +  + TP  CRL D+TYAAPI  DVEYT G+      K
Sbjct: 90   YPHIYLRFLNVGIGKPSIMIDEVTEDLTPQTCRLSDLTYAAPICADVEYTLGSHDKPDIK 149

Query: 3181 GKGAITIGRLPIMLRSCQCILTGKSETELAKLGECPLDPGGYFVVKGTEKVILIQEQLSK 3002
             K  + IGR+PIMLRSC C+L G+ E ELAKLGECPLDPGGYFV+KGTEKVILIQEQLSK
Sbjct: 150  RKLKVEIGRMPIMLRSCCCVLHGRDEAELAKLGECPLDPGGYFVIKGTEKVILIQEQLSK 209

Query: 3001 NRILIDTDSKGXXXXXXXXXTHEKKSKTIIIVKHEIFYLKLNTFTEDVPIVIVVKAMGIE 2822
            NRI+IDTD KG         T + K+KT+++++ E  +L+LN F + VP+++V+KAMG+E
Sbjct: 210  NRIIIDTDKKGNITASVTSSTEKIKTKTVVVMEKEKLWLQLNKFPKKVPLMVVMKAMGME 269

Query: 2821 SDQEFVQMVGRDPRFGGILAPSLQNCASYGIYTKELALEYLGTKVKSMRFGNEKSERSKV 2642
            SDQE  QMVGRDPR+  +L PS++ C    +YT+E ALEYL   VK   + N  +E  K 
Sbjct: 270  SDQEVTQMVGRDPRYSFLLLPSIEECTKCKVYTREQALEYLDKLVKRPTYSNNAAE--KE 327

Query: 2641 DEARDILHNVFLANVPVHKFDFRPKCIYVAVMLRRMIEAMLNPEAVDDKDYVGNKRLELA 2462
              A   L +VFLANVPV + +FRPKCIYVAVM+RR+++A+LN +A+DDKDYVGNKRLEL+
Sbjct: 328  GAAFSALRDVFLANVPVDQDNFRPKCIYVAVMMRRIMDAILNKDAMDDKDYVGNKRLELS 387

Query: 2461 GVLIALLFEDLFKRMNQEIKSHVDKTFSK-QRSTMFDVAKAIPP--HIISYGLEHAISSG 2291
            G LI+LLFEDLFK M  E+K+  DK   K  ++  FD+   +     II+ GLE  +S+G
Sbjct: 388  GQLISLLFEDLFKSMTTEVKNLTDKMLEKPDKAKNFDICTLLTRTRSIITLGLERTLSTG 447

Query: 2290 NWNVKRFKMDRKGVTQVVSRLSYIASLGHMTRIQSQFEKTRKVSGPRALQSSQWGMLCPC 2111
            N+ +KRF+M+RKG+TQV+ RLS+I +LGHMTR+  QFEK+RKVSGPRALQ SQWGMLCPC
Sbjct: 448  NFEIKRFRMERKGMTQVLQRLSFIGALGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPC 507

Query: 2110 DTPEGEACGLVKNLALMTHVTTDEEEAPLITLCHTLGVEDLSLLSGEELHSRKAYLIIFN 1931
            DTPEGE+CGLVKNLALMTHVTTDEEE PLI+LC +LGVED+  LS EELH+  ++L+IFN
Sbjct: 508  DTPEGESCGLVKNLALMTHVTTDEEEKPLISLCESLGVEDMKDLSAEELHTPDSFLVIFN 567

Query: 1930 GLMLGIHRQPKRFAHFLRILRRAGKIGEFVSVFVNDKQRCVYVASDGGRVCRPLVIADNG 1751
            GL+LG HR+P  FA  +R LRRAGKIGEFVSV+VN+KQ CVY+ASDGGRVCRPLVIAD G
Sbjct: 568  GLILGKHRRPLHFATAIRKLRRAGKIGEFVSVYVNEKQHCVYLASDGGRVCRPLVIADKG 627

Query: 1750 ISRIKEHHMKELRDGFRTFDDFLREGLVEYLDVNEENNALIALYESEATESTSHIEIEPF 1571
            ISRIK+HHMKEL DG RTFDDFLR+GL+EYLDVNEENNALIALYE +AT  T+HIEIEPF
Sbjct: 628  ISRIKQHHMKELMDGVRTFDDFLRDGLLEYLDVNEENNALIALYEGDATSETTHIEIEPF 687

Query: 1570 TILGVCAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAYNQLCRMDTLLYLLVYPQRPLLTT 1391
            TILGV AGLIPYPHHNQSPRNTYQCAMGKQAMGNIA+NQL RMD+LLYLLVYPQRPLLTT
Sbjct: 688  TILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLRRMDSLLYLLVYPQRPLLTT 747

Query: 1390 KTIELVKYDKLGAGQNATVAVMSYSGYDIEDAIVMNKASLDRGFGRCIVMKKYSAVLKKH 1211
            KTIELV YDKLGAGQNATVAVMSYSGYDIEDAIVMNKASLDRGFGRCIVMKKY+A+++KH
Sbjct: 748  KTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKASLDRGFGRCIVMKKYNAIIQKH 807

Query: 1210 PNRTQDRIIGPTSSSGRVDTRCQALDNDGIAAPGEIIRNHDIYINKQTPTKTREEVKNPM 1031
             N T DRI+ P  ++     R Q LD+DGIAAPGEI+R +DIYINKQ+P  TR       
Sbjct: 808  SNDTSDRILRPNRTADTAG-RMQILDDDGIAAPGEILRPYDIYINKQSPIDTRTPKTGSA 866

Query: 1030 A-LPDSEYKFTPQTYKAPEPSVVDKVVLTSNEEDALNIKFLFRQTRRPELGDKFSSRHGQ 854
            A LPDS Y+   Q++K     VVD+VVL S++++ + IKFL R TRRPELGDKFSSRHGQ
Sbjct: 867  ANLPDSAYRSNAQSFKGNGGEVVDRVVLCSDKDNNMCIKFLIRHTRRPELGDKFSSRHGQ 926

Query: 853  KGVCGNIVQQEDFPFSERGICPDLIMNPHGFPSRMTIGKMIELLGGKAGVCCGKFHYGSA 674
            KGVCG IV QEDFPFSE+GICPDLIMNPHGFPSRMT+GKMIELLGGKAGV CG+FHYGSA
Sbjct: 927  KGVCGTIVPQEDFPFSEKGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSA 986

Query: 673  FGEPSGHADKVETICATLVKHGFCYSGKDLIYSGITGYPLQAYIFMGPIYYQKLKHMVVD 494
            FGE SGHADKVETI  TLV  GF YSGKD IYSGITG PLQAYIFMGPIYYQKLKHMV+D
Sbjct: 987  FGERSGHADKVETISETLVSKGFNYSGKDFIYSGITGCPLQAYIFMGPIYYQKLKHMVLD 1046

Query: 493  KMHARASGPRMMLTRQPTEGRSRDGGLRLGEMERDCLIAYGASMMILERLMISSDQFEIQ 314
            KMHAR SGPR+MLTRQPTEGR+R+GGLR+GEMERDCLIAYGASM+I ERLM+SSD FE+Q
Sbjct: 1047 KMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIYERLMLSSDPFEVQ 1106

Query: 313  VCTKCGLLGYYNHKLKMGFCSTCKSGEEIATMKLPYACKLLFQELQSMNIVPRLQLAEA 137
            VCT CGLLGYYNHKLK G CS+CK+G+ I+TMKLPYACKL+ QELQSMNIVPRL+LA+A
Sbjct: 1107 VCTACGLLGYYNHKLKTGICSSCKNGDNISTMKLPYACKLMIQELQSMNIVPRLKLADA 1165


>gb|ESW24958.1| hypothetical protein PHAVU_004G175000g [Phaseolus vulgaris]
          Length = 1161

 Score = 1593 bits (4125), Expect = 0.0
 Identities = 794/1139 (69%), Positives = 938/1139 (82%), Gaps = 5/1139 (0%)
 Frame = -3

Query: 3538 NERNLAAPVKTAVDKFQLLPAFLKVRGLVKQHIDSFNFFVNHEIKKIIHAKANEKVISEN 3359
            ++R L AP+K+AVDKFQLLP FLKVRGLVKQH+DSFN+FV  EIKKI+  +AN  + +  
Sbjct: 28   DQRILTAPIKSAVDKFQLLPEFLKVRGLVKQHLDSFNYFVRTEIKKIV--RANNLISATR 85

Query: 3358 NPNFYLKYLDIRVDRPCLEEDLLHVETTPHQCRLRDMTYAAPIKVDVEYTRGNEIVVRKG 3179
            +P+ YL++L++++ +PC+ ++ +  + TP  CRL D TYAAPI VDVEYT G+    R  
Sbjct: 86   HPHIYLRFLNVKIRKPCIMDESVTDDVTPQTCRLSDQTYAAPICVDVEYTHGSRDDPRLH 145

Query: 3178 KGA-ITIGRLPIMLRSCQCILTGKSETELAKLGECPLDPGGYFVVKGTEKVILIQEQLSK 3002
            K   + IGR+PIMLRSC C+L G+ + ELAKLGECPLDPGGYFVVKGTEKVILIQEQLSK
Sbjct: 146  KRLNVEIGRMPIMLRSCCCVLYGRDQAELAKLGECPLDPGGYFVVKGTEKVILIQEQLSK 205

Query: 3001 NRILIDTDSKGXXXXXXXXXTHEKKSKTIIIVKHEIFYLKLNTFTEDVPIVIVVKAMGIE 2822
            NRI+IDTD KG         T + K+KTII++++E  +L LN F + VP++ V+KAMGIE
Sbjct: 206  NRIIIDTDKKGNIAASVTSSTEKIKTKTIIVMENEKLWLHLNQFPKKVPLMAVMKAMGIE 265

Query: 2821 SDQEFVQMVGRDPRFGGILAPSLQNCASYGIYTKELALEYLGTKVKSMRFGNEKSERSKV 2642
            SDQE  QMVGRDPR+  +L PS + C    +YT+E ALEYL   VK   + +  +E  K 
Sbjct: 266  SDQEVTQMVGRDPRYSFLLLPSFEECRKCNVYTQEQALEYLDKMVKRSMYSSNSAE--KE 323

Query: 2641 DEARDILHNVFLANVPVHKFDFRPKCIYVAVMLRRMIEAMLNPEAVDDKDYVGNKRLELA 2462
              A  +L +VFLANVPV   +FRPKCIYVAVM+RR+++A+LN +A+DDKDYVGNKRLEL+
Sbjct: 324  GRAFSVLRDVFLANVPVDGDNFRPKCIYVAVMMRRIMDAILNKDAMDDKDYVGNKRLELS 383

Query: 2461 GVLIALLFEDLFKRMNQEIKSHVDKTFSK-QRSTMFDVAKAI--PPHIISYGLEHAISSG 2291
            G LI+LLFEDLFK M  E+K+  DK   K  ++  FD++  +    +II+ GLE  +S+G
Sbjct: 384  GQLISLLFEDLFKSMATEVKNLTDKMLDKPDKARNFDISTLLNRTQNIITLGLERTLSTG 443

Query: 2290 NWNVKRFKMDRKGVTQVVSRLSYIASLGHMTRIQSQFEKTRKVSGPRALQSSQWGMLCPC 2111
            N+ +KRF+M+RKG+TQV+ RLS+I ++GHMTR+  QFEK+RKVSGPRALQ SQWGMLCPC
Sbjct: 444  NFEIKRFRMERKGMTQVLQRLSFIGAMGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPC 503

Query: 2110 DTPEGEACGLVKNLALMTHVTTDEEEAPLITLCHTLGVEDLSLLSGEELHSRKAYLIIFN 1931
            DTPEGE+CGLVKNLALMTHVTTDEEE+PLI++C++LGVEDL LLS EELH+  ++L+I N
Sbjct: 504  DTPEGESCGLVKNLALMTHVTTDEEESPLISMCYSLGVEDLELLSAEELHTPDSFLVILN 563

Query: 1930 GLMLGIHRQPKRFAHFLRILRRAGKIGEFVSVFVNDKQRCVYVASDGGRVCRPLVIADNG 1751
            GL+LG H++P RFA  +R LRR GKIGEFVSVFV++KQ CVY+ASDGGRVCRPLVIAD G
Sbjct: 564  GLILGKHKRPLRFATAIRKLRRRGKIGEFVSVFVHEKQNCVYLASDGGRVCRPLVIADKG 623

Query: 1750 ISRIKEHHMKELRDGFRTFDDFLREGLVEYLDVNEENNALIALYESEATESTSHIEIEPF 1571
            ISRIK+HHMKEL DG RTFDDFLR+GL+EYLDVNEENN LIALYE +AT  T+HIEIEPF
Sbjct: 624  ISRIKQHHMKELMDGVRTFDDFLRDGLLEYLDVNEENNTLIALYEGDATSETTHIEIEPF 683

Query: 1570 TILGVCAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAYNQLCRMDTLLYLLVYPQRPLLTT 1391
            TILGV AGLIPYPHHNQSPRNTYQCAMGKQAMGNIA+NQL RMD+LLYLLVYPQRPLLTT
Sbjct: 684  TILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLRRMDSLLYLLVYPQRPLLTT 743

Query: 1390 KTIELVKYDKLGAGQNATVAVMSYSGYDIEDAIVMNKASLDRGFGRCIVMKKYSAVLKKH 1211
            KTIELV YDKLGAGQNATVAVMSYSGYDIEDAIVMNKASLDRGFGRCIVMKKYSAV++KH
Sbjct: 744  KTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKASLDRGFGRCIVMKKYSAVIQKH 803

Query: 1210 PNRTQDRIIGPTSSSGRVDTRCQALDNDGIAAPGEIIRNHDIYINKQTPTKTREEVKNPM 1031
             N T DRI+ P  ++     R + LD+DGIAAPGEI++  DIYINKQ+P  TR       
Sbjct: 804  SNDTSDRILRPNRAADTAG-RMRILDDDGIAAPGEILKPFDIYINKQSPIDTRTPRTGAA 862

Query: 1030 A-LPDSEYKFTPQTYKAPEPSVVDKVVLTSNEEDALNIKFLFRQTRRPELGDKFSSRHGQ 854
              LPDS Y+   Q++K     VVD+VVL S+++  + IKFL R TRRPELGDKFSSRHGQ
Sbjct: 863  GNLPDSAYRSNSQSFKGHGGEVVDRVVLCSDKDKNMCIKFLIRHTRRPELGDKFSSRHGQ 922

Query: 853  KGVCGNIVQQEDFPFSERGICPDLIMNPHGFPSRMTIGKMIELLGGKAGVCCGKFHYGSA 674
            KGVCG IVQQEDFPFSE+GICPDLIMNPHGFPSRMT+GKMIELLGGKAGV CG+FHYGSA
Sbjct: 923  KGVCGTIVQQEDFPFSEKGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSA 982

Query: 673  FGEPSGHADKVETICATLVKHGFCYSGKDLIYSGITGYPLQAYIFMGPIYYQKLKHMVVD 494
            FGE SGHADKVE I  TLV  GF YSGKD IYSGITG PLQAYIFMGPIYYQKLKHMV+D
Sbjct: 983  FGERSGHADKVEAISETLVSKGFSYSGKDFIYSGITGCPLQAYIFMGPIYYQKLKHMVLD 1042

Query: 493  KMHARASGPRMMLTRQPTEGRSRDGGLRLGEMERDCLIAYGASMMILERLMISSDQFEIQ 314
            KMHAR SGPR+MLTRQPTEGR+R+GGLR+GEMERDCLIAYGASM+I ERLM+SSD FE+Q
Sbjct: 1043 KMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIYERLMLSSDPFEVQ 1102

Query: 313  VCTKCGLLGYYNHKLKMGFCSTCKSGEEIATMKLPYACKLLFQELQSMNIVPRLQLAEA 137
            VCT CGLLGYYNHKLK G CS CK+G++I+TMKLPYACKL+ QELQSMNIVPRL+LA+A
Sbjct: 1103 VCTACGLLGYYNHKLKTGICSYCKNGDKISTMKLPYACKLMIQELQSMNIVPRLKLADA 1161


>ref|NP_001050323.1| Os03g0403100 [Oryza sativa Japonica Group]
            gi|108708688|gb|ABF96483.1| DNA-directed RNA polymerase
            III 130 kDa polypeptide, putative, expressed [Oryza
            sativa Japonica Group] gi|113548794|dbj|BAF12237.1|
            Os03g0403100 [Oryza sativa Japonica Group]
          Length = 1155

 Score = 1575 bits (4079), Expect = 0.0
 Identities = 782/1140 (68%), Positives = 927/1140 (81%), Gaps = 9/1140 (0%)
 Frame = -3

Query: 3532 RNLAAPVKTAVDKFQLLPAFLKVRGLVKQHIDSFNFFVNHEIKKIIHAKANEKVISENNP 3353
            R+LAAPV   VDKF LLPAFLKVRGLVK+HIDSFN+F+   I+ I+  KAN ++ + NNP
Sbjct: 25   RSLAAPVTKPVDKFALLPAFLKVRGLVKEHIDSFNYFITKGIRNIV--KANNRIEARNNP 82

Query: 3352 NFYLKYLDIRVDRPCLEEDLLHVETTPHQCRLRDMTYAAPIKVDVEYTRGNEIVVRKGKG 3173
            + +L+Y  +RV  P ++   +  + TPH CRL D TY+AP+  D+EYT G +  +++ K 
Sbjct: 83   SIFLRYNSVRVGVPSVQVQYIAEKITPHFCRLTDRTYSAPVLADIEYTVGKQYELKR-KP 141

Query: 3172 AITIGRLPIMLRSCQCILTGKSETELAKLGECPLDPGGYFVVKGTEKVILIQEQLSKNRI 2993
               IG LPIMLRS  C+L GK E ELA+ GECPLDPGGYF+VKGTEKVILIQEQLSKNRI
Sbjct: 142  NFIIGYLPIMLRSHACVLNGKDEAELARYGECPLDPGGYFIVKGTEKVILIQEQLSKNRI 201

Query: 2992 LIDTDSKGXXXXXXXXXTHEKKSKTIIIVKHEIFYLKLNTFTEDVPIVIVVKAMGIESDQ 2813
            +IDTDSKG         THE KSKT+I ++ E  YL+LN FT+ +PI++V+KAMG+ESDQ
Sbjct: 202  IIDTDSKGRVIASVTSSTHEIKSKTVIFMEKEKIYLQLNQFTKPIPIIVVMKAMGMESDQ 261

Query: 2812 EFVQMVGRDPRFGGILAPSLQNCASYGIYTKELALEYLGTKVKSMRFGNEKSERSKVDEA 2633
            E  QMVGRDPR+G +L PS+Q CA   IYT++ AL+Y+  KV     GN+K  RSK    
Sbjct: 262  EVAQMVGRDPRYGDLLYPSIQECAFERIYTQKQALQYMDDKVMYPGAGNQKEGRSK---- 317

Query: 2632 RDILHNVFLANVPVHKFDFRPKCIYVAVMLRRMIEAMLNPEAVDDKDYVGNKRLELAGVL 2453
              IL +VF+A+VPV   +FRPKCIY AVMLRRM++A+LN +  DDKDYVGNKRLEL+G L
Sbjct: 318  -SILRDVFVAHVPVESGNFRPKCIYTAVMLRRMMDAILNADTFDDKDYVGNKRLELSGQL 376

Query: 2452 IALLFEDLFKRMNQEIKSHVDKTFSKQRSTMFDVAKAIPPHIISYGLEHAISSGNWNVKR 2273
            I+LLFEDLFK MN      ++KT  K  S+  D++  I  +II++GLE AIS+GNW++KR
Sbjct: 377  ISLLFEDLFKTMNSNAVELMNKTSEKIHSSPLDLSLHIKENIITHGLERAISTGNWDIKR 436

Query: 2272 FKMDRKGVTQVVSRLSYIASLGHMTRIQSQFEKTRKVSGPRALQSSQWGMLCPCDTPEGE 2093
            F+M RKGV+QV+SRLSY+ASLG+MTRI  QFEKTRK SGPRALQ SQWGMLCPCDTPEGE
Sbjct: 437  FRMHRKGVSQVLSRLSYMASLGYMTRITPQFEKTRKTSGPRALQPSQWGMLCPCDTPEGE 496

Query: 2092 ACGLVKNLALMTHVTTDEEEAPLITLCHTLGVEDLSLLSGEELHSRKAYLIIFNGLMLGI 1913
            ACGL KNLAL+THVTTD+EE PL+ LC++LGVEDLSLLSGEE+H+  ++L++FNGL+LG 
Sbjct: 497  ACGLTKNLALLTHVTTDQEEGPLMNLCYSLGVEDLSLLSGEEIHASGSFLVMFNGLILGK 556

Query: 1912 HRQPKRFAHFLRILRRAGKIGEFVSVFVNDKQRCVYVASDGGRVCRPLVIADNGISRIKE 1733
            HRQP+RFA+ +R LRR+G IGEFVS+FVN+KQ C+++ASDGGRVCRPL+IAD GI R+KE
Sbjct: 557  HRQPQRFANAMRKLRRSGIIGEFVSIFVNEKQHCIHIASDGGRVCRPLIIADKGIPRVKE 616

Query: 1732 HHMKELRDGFRTFDDFLREGLVEYLDVNEENNALIALYESEATE-----STSHIEIEPFT 1568
            HHMK+LRDG R+FDDFLR+GL+EYLDVNEENNALIALYE E  +     S +HIEIEP T
Sbjct: 617  HHMKQLRDGIRSFDDFLRDGLIEYLDVNEENNALIALYEHEDQDDVQRSSITHIEIEPLT 676

Query: 1567 ILGVCAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAYNQLCRMDTLLYLLVYPQRPLLTTK 1388
            ILGV AGLIPYPHHNQSPRNTYQCAMGKQAMGNIAYNQL R D+LLYLLVY QRPLLTTK
Sbjct: 677  ILGVVAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAYNQLFRADSLLYLLVYAQRPLLTTK 736

Query: 1387 TIELVKYDKLGAGQNATVAVMSYSGYDIEDAIVMNKASLDRGFGRCIVMKKYSAVLKKHP 1208
            TIELV YDKLGAGQNATVAVMSYSGYDIEDAIVMNK+SLDRGFGRCI MKKY+   +K+ 
Sbjct: 737  TIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIAMKKYTVTKEKYE 796

Query: 1207 NRTQDRIIGP--TSSSGRVDTRCQALDNDGIAAPGEIIRNHDIYINKQTPTKTREEVKNP 1034
                DRI+ P        +    +ALD DG AAPG IIRNHDIY+NKQTP  T+ +  + 
Sbjct: 797  GGYSDRIVKPQRDKDGALLKQNMRALDEDGFAAPGLIIRNHDIYVNKQTPRNTKRD--SG 854

Query: 1033 MALPDSEYKFTPQTYKA--PEPSVVDKVVLTSNEEDALNIKFLFRQTRRPELGDKFSSRH 860
              L D +YK +P  YK    E +VVD+V+L S+ ++ L IK + R TRRPE+GDKFSSRH
Sbjct: 855  AHLTDRDYKDSPAVYKGVDGETTVVDRVMLCSDTDEKLIIKCIIRHTRRPEVGDKFSSRH 914

Query: 859  GQKGVCGNIVQQEDFPFSERGICPDLIMNPHGFPSRMTIGKMIELLGGKAGVCCGKFHYG 680
            GQKGVCG IVQQEDFPFSERGICPDLIMNPHGFPSRMTIGKMIELLGGKAGV CG+FHYG
Sbjct: 915  GQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTIGKMIELLGGKAGVSCGQFHYG 974

Query: 679  SAFGEPSGHADKVETICATLVKHGFCYSGKDLIYSGITGYPLQAYIFMGPIYYQKLKHMV 500
            SAFGEPSG+ADKVE I  TLVKHGF Y+GKDL+YSGI G+P QAY+FMGPIYYQKLKHMV
Sbjct: 975  SAFGEPSGNADKVEDISRTLVKHGFSYNGKDLLYSGILGHPCQAYVFMGPIYYQKLKHMV 1034

Query: 499  VDKMHARASGPRMMLTRQPTEGRSRDGGLRLGEMERDCLIAYGASMMILERLMISSDQFE 320
            +DKMHARASGPR++LTRQPTEGRSRDGGLRLGEMERDCLIAYGASM+I ERL+ISSD ++
Sbjct: 1035 LDKMHARASGPRVLLTRQPTEGRSRDGGLRLGEMERDCLIAYGASMLIFERLLISSDPYQ 1094

Query: 319  IQVCTKCGLLGYYNHKLKMGFCSTCKSGEEIATMKLPYACKLLFQELQSMNIVPRLQLAE 140
            +QVC KCGLLGYYNHKLK  +CS CK+GE +A M++PYACKLLFQELQ+MN+VPRL+L E
Sbjct: 1095 VQVCRKCGLLGYYNHKLKASYCSMCKNGENMAKMRMPYACKLLFQELQAMNVVPRLKLTE 1154


>gb|AAP03366.1| putative RNA polymerase III [Oryza sativa Japonica Group]
          Length = 1174

 Score = 1575 bits (4079), Expect = 0.0
 Identities = 782/1140 (68%), Positives = 927/1140 (81%), Gaps = 9/1140 (0%)
 Frame = -3

Query: 3532 RNLAAPVKTAVDKFQLLPAFLKVRGLVKQHIDSFNFFVNHEIKKIIHAKANEKVISENNP 3353
            R+LAAPV   VDKF LLPAFLKVRGLVK+HIDSFN+F+   I+ I+  KAN ++ + NNP
Sbjct: 44   RSLAAPVTKPVDKFALLPAFLKVRGLVKEHIDSFNYFITKGIRNIV--KANNRIEARNNP 101

Query: 3352 NFYLKYLDIRVDRPCLEEDLLHVETTPHQCRLRDMTYAAPIKVDVEYTRGNEIVVRKGKG 3173
            + +L+Y  +RV  P ++   +  + TPH CRL D TY+AP+  D+EYT G +  +++ K 
Sbjct: 102  SIFLRYNSVRVGVPSVQVQYIAEKITPHFCRLTDRTYSAPVLADIEYTVGKQYELKR-KP 160

Query: 3172 AITIGRLPIMLRSCQCILTGKSETELAKLGECPLDPGGYFVVKGTEKVILIQEQLSKNRI 2993
               IG LPIMLRS  C+L GK E ELA+ GECPLDPGGYF+VKGTEKVILIQEQLSKNRI
Sbjct: 161  NFIIGYLPIMLRSHACVLNGKDEAELARYGECPLDPGGYFIVKGTEKVILIQEQLSKNRI 220

Query: 2992 LIDTDSKGXXXXXXXXXTHEKKSKTIIIVKHEIFYLKLNTFTEDVPIVIVVKAMGIESDQ 2813
            +IDTDSKG         THE KSKT+I ++ E  YL+LN FT+ +PI++V+KAMG+ESDQ
Sbjct: 221  IIDTDSKGRVIASVTSSTHEIKSKTVIFMEKEKIYLQLNQFTKPIPIIVVMKAMGMESDQ 280

Query: 2812 EFVQMVGRDPRFGGILAPSLQNCASYGIYTKELALEYLGTKVKSMRFGNEKSERSKVDEA 2633
            E  QMVGRDPR+G +L PS+Q CA   IYT++ AL+Y+  KV     GN+K  RSK    
Sbjct: 281  EVAQMVGRDPRYGDLLYPSIQECAFERIYTQKQALQYMDDKVMYPGAGNQKEGRSK---- 336

Query: 2632 RDILHNVFLANVPVHKFDFRPKCIYVAVMLRRMIEAMLNPEAVDDKDYVGNKRLELAGVL 2453
              IL +VF+A+VPV   +FRPKCIY AVMLRRM++A+LN +  DDKDYVGNKRLEL+G L
Sbjct: 337  -SILRDVFVAHVPVESGNFRPKCIYTAVMLRRMMDAILNADTFDDKDYVGNKRLELSGQL 395

Query: 2452 IALLFEDLFKRMNQEIKSHVDKTFSKQRSTMFDVAKAIPPHIISYGLEHAISSGNWNVKR 2273
            I+LLFEDLFK MN      ++KT  K  S+  D++  I  +II++GLE AIS+GNW++KR
Sbjct: 396  ISLLFEDLFKTMNSNAVELMNKTSEKIHSSPLDLSLHIKENIITHGLERAISTGNWDIKR 455

Query: 2272 FKMDRKGVTQVVSRLSYIASLGHMTRIQSQFEKTRKVSGPRALQSSQWGMLCPCDTPEGE 2093
            F+M RKGV+QV+SRLSY+ASLG+MTRI  QFEKTRK SGPRALQ SQWGMLCPCDTPEGE
Sbjct: 456  FRMHRKGVSQVLSRLSYMASLGYMTRITPQFEKTRKTSGPRALQPSQWGMLCPCDTPEGE 515

Query: 2092 ACGLVKNLALMTHVTTDEEEAPLITLCHTLGVEDLSLLSGEELHSRKAYLIIFNGLMLGI 1913
            ACGL KNLAL+THVTTD+EE PL+ LC++LGVEDLSLLSGEE+H+  ++L++FNGL+LG 
Sbjct: 516  ACGLTKNLALLTHVTTDQEEGPLMNLCYSLGVEDLSLLSGEEIHASGSFLVMFNGLILGK 575

Query: 1912 HRQPKRFAHFLRILRRAGKIGEFVSVFVNDKQRCVYVASDGGRVCRPLVIADNGISRIKE 1733
            HRQP+RFA+ +R LRR+G IGEFVS+FVN+KQ C+++ASDGGRVCRPL+IAD GI R+KE
Sbjct: 576  HRQPQRFANAMRKLRRSGIIGEFVSIFVNEKQHCIHIASDGGRVCRPLIIADKGIPRVKE 635

Query: 1732 HHMKELRDGFRTFDDFLREGLVEYLDVNEENNALIALYESEATE-----STSHIEIEPFT 1568
            HHMK+LRDG R+FDDFLR+GL+EYLDVNEENNALIALYE E  +     S +HIEIEP T
Sbjct: 636  HHMKQLRDGIRSFDDFLRDGLIEYLDVNEENNALIALYEHEDQDDVQRSSITHIEIEPLT 695

Query: 1567 ILGVCAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAYNQLCRMDTLLYLLVYPQRPLLTTK 1388
            ILGV AGLIPYPHHNQSPRNTYQCAMGKQAMGNIAYNQL R D+LLYLLVY QRPLLTTK
Sbjct: 696  ILGVVAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAYNQLFRADSLLYLLVYAQRPLLTTK 755

Query: 1387 TIELVKYDKLGAGQNATVAVMSYSGYDIEDAIVMNKASLDRGFGRCIVMKKYSAVLKKHP 1208
            TIELV YDKLGAGQNATVAVMSYSGYDIEDAIVMNK+SLDRGFGRCI MKKY+   +K+ 
Sbjct: 756  TIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIAMKKYTVTKEKYE 815

Query: 1207 NRTQDRIIGP--TSSSGRVDTRCQALDNDGIAAPGEIIRNHDIYINKQTPTKTREEVKNP 1034
                DRI+ P        +    +ALD DG AAPG IIRNHDIY+NKQTP  T+ +  + 
Sbjct: 816  GGYSDRIVKPQRDKDGALLKQNMRALDEDGFAAPGLIIRNHDIYVNKQTPRNTKRD--SG 873

Query: 1033 MALPDSEYKFTPQTYKA--PEPSVVDKVVLTSNEEDALNIKFLFRQTRRPELGDKFSSRH 860
              L D +YK +P  YK    E +VVD+V+L S+ ++ L IK + R TRRPE+GDKFSSRH
Sbjct: 874  AHLTDRDYKDSPAVYKGVDGETTVVDRVMLCSDTDEKLIIKCIIRHTRRPEVGDKFSSRH 933

Query: 859  GQKGVCGNIVQQEDFPFSERGICPDLIMNPHGFPSRMTIGKMIELLGGKAGVCCGKFHYG 680
            GQKGVCG IVQQEDFPFSERGICPDLIMNPHGFPSRMTIGKMIELLGGKAGV CG+FHYG
Sbjct: 934  GQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTIGKMIELLGGKAGVSCGQFHYG 993

Query: 679  SAFGEPSGHADKVETICATLVKHGFCYSGKDLIYSGITGYPLQAYIFMGPIYYQKLKHMV 500
            SAFGEPSG+ADKVE I  TLVKHGF Y+GKDL+YSGI G+P QAY+FMGPIYYQKLKHMV
Sbjct: 994  SAFGEPSGNADKVEDISRTLVKHGFSYNGKDLLYSGILGHPCQAYVFMGPIYYQKLKHMV 1053

Query: 499  VDKMHARASGPRMMLTRQPTEGRSRDGGLRLGEMERDCLIAYGASMMILERLMISSDQFE 320
            +DKMHARASGPR++LTRQPTEGRSRDGGLRLGEMERDCLIAYGASM+I ERL+ISSD ++
Sbjct: 1054 LDKMHARASGPRVLLTRQPTEGRSRDGGLRLGEMERDCLIAYGASMLIFERLLISSDPYQ 1113

Query: 319  IQVCTKCGLLGYYNHKLKMGFCSTCKSGEEIATMKLPYACKLLFQELQSMNIVPRLQLAE 140
            +QVC KCGLLGYYNHKLK  +CS CK+GE +A M++PYACKLLFQELQ+MN+VPRL+L E
Sbjct: 1114 VQVCRKCGLLGYYNHKLKASYCSMCKNGENMAKMRMPYACKLLFQELQAMNVVPRLKLTE 1173


>ref|XP_006656544.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2-like [Oryza
            brachyantha]
          Length = 1164

 Score = 1572 bits (4070), Expect = 0.0
 Identities = 778/1140 (68%), Positives = 928/1140 (81%), Gaps = 9/1140 (0%)
 Frame = -3

Query: 3532 RNLAAPVKTAVDKFQLLPAFLKVRGLVKQHIDSFNFFVNHEIKKIIHAKANEKVISENNP 3353
            R+LAAPV   VDKF LLPAFLKVRGLVK+HIDSFN+F+   IK I+  KAN ++ + NNP
Sbjct: 33   RSLAAPVSNPVDKFALLPAFLKVRGLVKEHIDSFNYFITKGIKNIV--KANNRIEARNNP 90

Query: 3352 NFYLKYLDIRVDRPCLEEDLLHVETTPHQCRLRDMTYAAPIKVDVEYTRGNEIVVRKGKG 3173
            + +L+Y+++RV  P ++ + +  + TPH CRL D TY+AP+  D+EYT G +  +++ K 
Sbjct: 91   SIFLRYVNVRVGVPSVQVEYIAEKITPHFCRLTDRTYSAPVLADIEYTVGKQYELKR-KP 149

Query: 3172 AITIGRLPIMLRSCQCILTGKSETELAKLGECPLDPGGYFVVKGTEKVILIQEQLSKNRI 2993
               IG LPIMLRS  C+L G+ E ELA+ GECPLDPGGYF+VKGTEKVILIQEQLSKNRI
Sbjct: 150  QFIIGYLPIMLRSYACVLNGRDEAELARYGECPLDPGGYFIVKGTEKVILIQEQLSKNRI 209

Query: 2992 LIDTDSKGXXXXXXXXXTHEKKSKTIIIVKHEIFYLKLNTFTEDVPIVIVVKAMGIESDQ 2813
            +IDTDSK          THE KSKT+I ++ E  YL+LN FT+ +PI++V+KAMG+ESDQ
Sbjct: 210  IIDTDSKRRVIASVTSSTHEIKSKTVIFMEKEKIYLQLNQFTKPIPIIVVMKAMGMESDQ 269

Query: 2812 EFVQMVGRDPRFGGILAPSLQNCASYGIYTKELALEYLGTKVKSMRFGNEKSERSKVDEA 2633
            E VQMVGRDPR+G +L PS+Q CA   IYT++ AL+Y+  KV     GN+K  RSK    
Sbjct: 270  EVVQMVGRDPRYGDLLYPSIQECAFERIYTQKQALQYMDDKVMYPGTGNQKEGRSK---- 325

Query: 2632 RDILHNVFLANVPVHKFDFRPKCIYVAVMLRRMIEAMLNPEAVDDKDYVGNKRLELAGVL 2453
              IL +VF+A+VPV+  +FRPKCIY AVMLRRM++A+LN +  DDKDYVGNKRLEL+G L
Sbjct: 326  -SILRDVFVAHVPVNSGNFRPKCIYTAVMLRRMMDAILNADTFDDKDYVGNKRLELSGQL 384

Query: 2452 IALLFEDLFKRMNQEIKSHVDKTFSKQRSTMFDVAKAIPPHIISYGLEHAISSGNWNVKR 2273
            I+LLFEDLFK MN      +++T  +  S+  D++  I  +II++GLE AIS+GNW++KR
Sbjct: 385  ISLLFEDLFKTMNSNAVELMNRTSERIHSSPLDLSLHIKENIITHGLERAISTGNWDIKR 444

Query: 2272 FKMDRKGVTQVVSRLSYIASLGHMTRIQSQFEKTRKVSGPRALQSSQWGMLCPCDTPEGE 2093
            F+M RKGV+QV+SRLSY+ASLG+MTRI  QFEKTRK SGPRALQ SQWGMLCPCDTPEGE
Sbjct: 445  FRMHRKGVSQVLSRLSYMASLGYMTRITPQFEKTRKTSGPRALQPSQWGMLCPCDTPEGE 504

Query: 2092 ACGLVKNLALMTHVTTDEEEAPLITLCHTLGVEDLSLLSGEELHSRKAYLIIFNGLMLGI 1913
            ACGL KNLAL+THVTTD+EE PL+ LC++LGVEDLSLLSGEE+H+  +YL++FNGL+LG 
Sbjct: 505  ACGLTKNLALLTHVTTDQEEGPLMNLCYSLGVEDLSLLSGEEIHAPGSYLVMFNGLILGK 564

Query: 1912 HRQPKRFAHFLRILRRAGKIGEFVSVFVNDKQRCVYVASDGGRVCRPLVIADNGISRIKE 1733
            HRQP+RFA+ +R LRR+G IGEFVS+FVN+KQ C+++ASDGGRVCRPL+IAD GISR+KE
Sbjct: 565  HRQPQRFANAMRKLRRSGIIGEFVSIFVNEKQHCIHIASDGGRVCRPLIIADKGISRVKE 624

Query: 1732 HHMKELRDGFRTFDDFLREGLVEYLDVNEENNALIALYESEATE-----STSHIEIEPFT 1568
            HHMKELRDG R+FDDFLR+GL+EYLDVNEENNALIALYE E  +     S +HIEIEP T
Sbjct: 625  HHMKELRDGIRSFDDFLRDGLIEYLDVNEENNALIALYEHEDQDNVQRSSITHIEIEPLT 684

Query: 1567 ILGVCAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAYNQLCRMDTLLYLLVYPQRPLLTTK 1388
            ILGV AGLIPYPHHNQSPRNTYQCAMGKQAMGN+AYNQL R D+LLYLLVY QRPLLTTK
Sbjct: 685  ILGVVAGLIPYPHHNQSPRNTYQCAMGKQAMGNVAYNQLFRADSLLYLLVYAQRPLLTTK 744

Query: 1387 TIELVKYDKLGAGQNATVAVMSYSGYDIEDAIVMNKASLDRGFGRCIVMKKYSAVLKKHP 1208
            TIELV YDKLGAGQNATVAVMSYSGYDIEDAIVMNK+SLDRGFGRCI MKKY+   +K+ 
Sbjct: 745  TIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIAMKKYTVTKEKYE 804

Query: 1207 NRTQDRIIGP--TSSSGRVDTRCQALDNDGIAAPGEIIRNHDIYINKQTPTKTREEVKNP 1034
                DRI+ P        +    +ALD DG AAPG IIRNHDIY+NKQTP  T+ +    
Sbjct: 805  GGYSDRIVKPQRDKDGSLLKQNMRALDEDGFAAPGLIIRNHDIYVNKQTPKSTKRD-SGG 863

Query: 1033 MALPDSEYKFTPQTYKA--PEPSVVDKVVLTSNEEDALNIKFLFRQTRRPELGDKFSSRH 860
              L D +YK +P  YK    E +VVD+V+L S+ ++ L IK + R TRRPE+GDKFSSRH
Sbjct: 864  AQLTDRDYKDSPAVYKGVDGETTVVDRVMLCSDTDEKLIIKCIIRHTRRPEVGDKFSSRH 923

Query: 859  GQKGVCGNIVQQEDFPFSERGICPDLIMNPHGFPSRMTIGKMIELLGGKAGVCCGKFHYG 680
            GQKGVCG IVQQEDFPFSERG+CPDLIMNPHGFPSRMTIGKMIELLGGKAG+ CG+FHYG
Sbjct: 924  GQKGVCGTIVQQEDFPFSERGVCPDLIMNPHGFPSRMTIGKMIELLGGKAGLSCGQFHYG 983

Query: 679  SAFGEPSGHADKVETICATLVKHGFCYSGKDLIYSGITGYPLQAYIFMGPIYYQKLKHMV 500
            SAFGE SG ADKVE I  TL+KHGF Y+GKDL+YSGI G P Q+YIFMGPIYYQKLKHMV
Sbjct: 984  SAFGESSGTADKVEDISLTLIKHGFSYNGKDLLYSGILGNPCQSYIFMGPIYYQKLKHMV 1043

Query: 499  VDKMHARASGPRMMLTRQPTEGRSRDGGLRLGEMERDCLIAYGASMMILERLMISSDQFE 320
            +DKMHARASGPR++LTRQPTEGRSRDGGLRLGEMERDCLIAYGASM+I ERL+ISSD ++
Sbjct: 1044 LDKMHARASGPRVLLTRQPTEGRSRDGGLRLGEMERDCLIAYGASMLIFERLLISSDPYQ 1103

Query: 319  IQVCTKCGLLGYYNHKLKMGFCSTCKSGEEIATMKLPYACKLLFQELQSMNIVPRLQLAE 140
            +QVC KCGLLGYYNHKLK  +CS CK+GE +A M++PYACKLLFQELQ+MN+VPRL+L E
Sbjct: 1104 VQVCRKCGLLGYYNHKLKASYCSMCKNGENMAKMRMPYACKLLFQELQAMNVVPRLKLTE 1163


>ref|XP_004510587.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2-like [Cicer
            arietinum]
          Length = 1134

 Score = 1571 bits (4068), Expect = 0.0
 Identities = 790/1134 (69%), Positives = 928/1134 (81%), Gaps = 4/1134 (0%)
 Frame = -3

Query: 3526 LAAPVKTAVDKFQLLPAFLKVRGLVKQHIDSFNFFVNHEIKKIIHAKANEKVISENNPNF 3347
            L  P K AVDKFQLLP FLK RGLVKQH+DSFN+FVN +IKKI+  +AN  V S   P+ 
Sbjct: 6    LIDPQKPAVDKFQLLPEFLKYRGLVKQHLDSFNYFVNTDIKKIV--RANNLVQSSRYPHI 63

Query: 3346 YLKYLDIRVDRPCLEEDLLHVETTPHQCRLRDMTYAAPIKVDVEYTRGN-EIVVRKGKGA 3170
            YL++LD+R+ +P    D      +P  CRL D TYAAPI V VEYT+G+ + V++  K  
Sbjct: 64   YLRFLDVRIGKPERIFDGSSEYVSPQTCRLSDQTYAAPILVSVEYTQGSPDNVIKIPKNK 123

Query: 3169 ITIGRLPIMLRSCQCILTGKSETELAKLGECPLDPGGYFVVKGTEKVILIQEQLSKNRIL 2990
            + IGR+PIMLRSC C+L  + E ELAKLGECPLDPGGYFV+KGTEKVILIQEQLSKNRI+
Sbjct: 124  VVIGRMPIMLRSCCCVLYNRDEAELAKLGECPLDPGGYFVIKGTEKVILIQEQLSKNRII 183

Query: 2989 IDTDSKGXXXXXXXXXTHEKKSKTIIIVKHEIFYLKLNTFTEDVPIVIVVKAMGIESDQE 2810
            IDTD K          T + K+KT I+++ E  +L+LN F   VP++IV+KAMG+ESD E
Sbjct: 184  IDTDKKKNITASVTSSTEKVKTKTTILMEREKMWLELNQFQTKVPLMIVMKAMGMESDHE 243

Query: 2809 FVQMVGRDPRFGGILAPSLQNCASYGIYTKELALEYLGTKVKSMRFGNEKSERSKVDEAR 2630
             VQM+GRDPR+G +L PS++ C   G+ T+  AL YL +K K   F   + E  K   A 
Sbjct: 244  VVQMIGRDPRYGLLLLPSIEECNKSGVSTQAQALAYLDSKAKRSMFSTMQPE--KEGRAF 301

Query: 2629 DILHNVFLANVPVHKFDFRPKCIYVAVMLRRMIEAMLNPEAVDDKDYVGNKRLELAGVLI 2450
             IL +VFLANVPVH+ +FRPKCIYVAVM+RR+++A+LN +A+DDKDYVGNKRLEL+G LI
Sbjct: 302  SILRDVFLANVPVHEDNFRPKCIYVAVMMRRILDAILNKDAMDDKDYVGNKRLELSGQLI 361

Query: 2449 ALLFEDLFKRMNQEIKSHVDKTFSK-QRSTMFDVAKAIPPHIISYGLEHAISSGNWNVKR 2273
            +LLFEDLFK M  E+++  DK   K  R+  FD    +    IS GLE  +S+GN+++KR
Sbjct: 362  SLLFEDLFKTMTTELQTLTDKYLEKPDRAKKFDFTTLLNRDYISPGLERYLSTGNFDIKR 421

Query: 2272 FKMDRKGVTQVVSRLSYIASLGHMTRIQSQFEKTRKVSGPRALQSSQWGMLCPCDTPEGE 2093
            FKM R G+TQV+ RLS+I++LG MTR++ QFEK++KVSGPRALQ SQWGMLCPCDTPEGE
Sbjct: 422  FKMHRSGMTQVLQRLSFISALGQMTRVKPQFEKSKKVSGPRALQPSQWGMLCPCDTPEGE 481

Query: 2092 ACGLVKNLALMTHVTTDEEEAPLITLCHTLGVEDLSLLSGEELHSRKAYLIIFNGLMLGI 1913
            ACGLVKNLALMTHVTTD++EAPLI+LC+ LGVED+  LSGEELH+  +YL+IFNGL+LG 
Sbjct: 482  ACGLVKNLALMTHVTTDDDEAPLISLCYILGVEDIEHLSGEELHTPNSYLVIFNGLILGK 541

Query: 1912 HRQPKRFAHFLRILRRAGKIGEFVSVFVNDKQRCVYVASDGGRVCRPLVIADNGISRIKE 1733
            HR+P+RFA  +R LRRAG IGEFVSV++N+KQ CVY+ASDGGRVCRPLVIAD GISR+K 
Sbjct: 542  HRRPQRFATAMRNLRRAGVIGEFVSVYLNEKQCCVYLASDGGRVCRPLVIADKGISRVKA 601

Query: 1732 HHMKELRDGFRTFDDFLREGLVEYLDVNEENNALIALYESEATESTSHIEIEPFTILGVC 1553
            HHMKEL+DG  TF+ FLR GL+EYLDVNEENNALIALYE +AT  T+HIEIEPFTILGVC
Sbjct: 602  HHMKELKDGVTTFNHFLRNGLIEYLDVNEENNALIALYEGDATPKTTHIEIEPFTILGVC 661

Query: 1552 AGLIPYPHHNQSPRNTYQCAMGKQAMGNIAYNQLCRMDTLLYLLVYPQRPLLTTKTIELV 1373
            AGLIPYPHHNQSPRNTYQCAMGKQAMGNIAYNQL RMDTLLYLLVYPQRPLLTTK+IELV
Sbjct: 662  AGLIPYPHHNQSPRNTYQCAMGKQAMGNIAYNQLRRMDTLLYLLVYPQRPLLTTKSIELV 721

Query: 1372 KYDKLGAGQNATVAVMSYSGYDIEDAIVMNKASLDRGFGRCIVMKKYSAVLKKHPNRTQD 1193
             YDKLGAGQNATVAVMSYSGYDIEDAIVMNK+SLDRGFGRCIVMK+Y A+ +K+ N T+D
Sbjct: 722  GYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVMKRYVAIRQKYSNGTED 781

Query: 1192 RIIGPTSSSGRVDTRCQALDNDGIAAPGEIIRNHDIYINKQTPTKTREEVKNPMA-LPDS 1016
            RII P  ++     R Q LD+DGIAAPGEIIR +D+YINKQ+P +TR       A LPD+
Sbjct: 782  RIIRPNRAADTTG-RMQILDDDGIAAPGEIIRPNDMYINKQSPIETRATTTGSTAKLPDN 840

Query: 1015 EYKFTPQTY-KAPEPSVVDKVVLTSNEEDALNIKFLFRQTRRPELGDKFSSRHGQKGVCG 839
             Y+ TPQT+ K     VVD+VVL ++++  L IKFL R TRRPELGDKFSSRHGQKGVCG
Sbjct: 841  AYRSTPQTFNKCHGGEVVDRVVLCNDKDTNLCIKFLTRHTRRPELGDKFSSRHGQKGVCG 900

Query: 838  NIVQQEDFPFSERGICPDLIMNPHGFPSRMTIGKMIELLGGKAGVCCGKFHYGSAFGEPS 659
                QEDFPFSE+GICPDLIMNPHGFPSRMT+GKMIELLGGKAGV CG+FHYGSAFGE S
Sbjct: 901  XXXXQEDFPFSEKGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGERS 960

Query: 658  GHADKVETICATLVKHGFCYSGKDLIYSGITGYPLQAYIFMGPIYYQKLKHMVVDKMHAR 479
            GHADKVETI  TLVKHGF Y+GKD IYSGITG PLQAYIFMGPIYYQKLKHMV+DKMHAR
Sbjct: 961  GHADKVETISETLVKHGFNYNGKDFIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHAR 1020

Query: 478  ASGPRMMLTRQPTEGRSRDGGLRLGEMERDCLIAYGASMMILERLMISSDQFEIQVCTKC 299
             +GPR ++TRQPTEGR+R+GGLR+GEMERDCLIAYGASM+I ERLMISSD FE+QVC KC
Sbjct: 1021 GNGPRALMTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMISSDPFEVQVCRKC 1080

Query: 298  GLLGYYNHKLKMGFCSTCKSGEEIATMKLPYACKLLFQELQSMNIVPRLQLAEA 137
            GLLGYYNHKLK G CS+CK+GE+I+T+KLPYACKLL QELQSMNIVPRL+LA+A
Sbjct: 1081 GLLGYYNHKLKTGICSSCKNGEQISTVKLPYACKLLMQELQSMNIVPRLKLADA 1134


>ref|XP_003516394.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc2-like isoform
            X1 [Glycine max]
          Length = 1166

 Score = 1568 bits (4060), Expect = 0.0
 Identities = 785/1139 (68%), Positives = 932/1139 (81%), Gaps = 5/1139 (0%)
 Frame = -3

Query: 3538 NERNLAAPVKTAVDKFQLLPAFLKVRGLVKQHIDSFNFFVNHEIKKIIHAKANEKVISEN 3359
            ++R L AP+K+AVDKFQL+P FLKVRGLVKQH+DSFN+FV  +IKKI+  +AN  +++  
Sbjct: 33   DQRVLTAPIKSAVDKFQLIPEFLKVRGLVKQHLDSFNYFVRTDIKKIV--RANNLIMASR 90

Query: 3358 NPNFYLKYLDIRVDRPCLEEDLLHVETTPHQCRLRDMTYAAPIKVDVEYT-RGNEIVVRK 3182
             P+ YL++L++ + +P +  D +    TP  CRL D+TYAAPI  DVEYT R ++    K
Sbjct: 91   YPHIYLRFLNVGIGKPSMMIDEVTEGLTPQTCRLSDLTYAAPICADVEYTLRSHDKPDNK 150

Query: 3181 GKGAITIGRLPIMLRSCQCILTGKSETELAKLGECPLDPGGYFVVKGTEKVILIQEQLSK 3002
                + IGR+PIMLRSC C+L GK E ELAKLGECPLDPGGYFV+KGTEKVILIQEQLSK
Sbjct: 151  RTLRVEIGRMPIMLRSCCCVLHGKDEAELAKLGECPLDPGGYFVIKGTEKVILIQEQLSK 210

Query: 3001 NRILIDTDSKGXXXXXXXXXTHEKKSKTIIIVKHEIFYLKLNTFTEDVPIVIVVKAMGIE 2822
            NRI+IDTD KG         T + K+KT+I++++E  +L+LN F + VP+++V+KAMG+E
Sbjct: 211  NRIIIDTDKKGNITASVTSSTEKIKTKTVIVMENEKLWLQLNKFPKKVPLMVVMKAMGME 270

Query: 2821 SDQEFVQMVGRDPRFGGILAPSLQNCASYGIYTKELALEYLGTKVKSMRFGNEKSERSKV 2642
            SDQE +QMVGRDPR+  +L PS++ C    +YTKE ALEYL   VK   + +  +E  K 
Sbjct: 271  SDQEVIQMVGRDPRYSFLLLPSIEECRKCKVYTKEQALEYLDKLVKRPTYSSNSAE--KE 328

Query: 2641 DEARDILHNVFLANVPVHKFDFRPKCIYVAVMLRRMIEAMLNPEAVDDKDYVGNKRLELA 2462
              A   L +VFLANVPV + +F+ KCIYVAVM+RR+++A+LN +A+DDKDYVGNKRLEL+
Sbjct: 329  GAAFSALRDVFLANVPVDQDNFQKKCIYVAVMMRRIMDAILNKDAMDDKDYVGNKRLELS 388

Query: 2461 GVLIALLFEDLFKRMNQEIKSHVDKTFSK-QRSTMFDVAKAIPP--HIISYGLEHAISSG 2291
            G LI+LLFEDLFK M  E+K+  DK   K  ++  FD+   +     II+ GLE  +S+G
Sbjct: 389  GQLISLLFEDLFKSMTTEVKNLTDKMLDKPDKAKNFDICTLLTRTRSIITLGLERTLSTG 448

Query: 2290 NWNVKRFKMDRKGVTQVVSRLSYIASLGHMTRIQSQFEKTRKVSGPRALQSSQWGMLCPC 2111
            N+ +KRF+M+RKG+TQV+ RLS+I +LGHMTR+  QFEK+RKVSGPRALQ SQWGMLCPC
Sbjct: 449  NFEIKRFRMERKGMTQVLQRLSFIGALGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPC 508

Query: 2110 DTPEGEACGLVKNLALMTHVTTDEEEAPLITLCHTLGVEDLSLLSGEELHSRKAYLIIFN 1931
            DTPEGE+CGLVKNLALMTHVTTDEEE PLI+L ++L V  +  L  EELH+  ++L+IFN
Sbjct: 509  DTPEGESCGLVKNLALMTHVTTDEEEKPLISLFYSLDVARIEHLFAEELHTPDSFLVIFN 568

Query: 1930 GLMLGIHRQPKRFAHFLRILRRAGKIGEFVSVFVNDKQRCVYVASDGGRVCRPLVIADNG 1751
            GL+LG HR+P  FA  +R LRRAG+IGEFVSV+VN+KQ CVY+ASDGGRVCRPLVIAD G
Sbjct: 569  GLILGKHRRPLHFATRIRKLRRAGEIGEFVSVYVNEKQHCVYLASDGGRVCRPLVIADKG 628

Query: 1750 ISRIKEHHMKELRDGFRTFDDFLREGLVEYLDVNEENNALIALYESEATESTSHIEIEPF 1571
            ISRIK+HHMKEL DG  TFDDFLR+GL+EYLDVNEENNALIALYE +AT  T+HIEIEPF
Sbjct: 629  ISRIKQHHMKELMDGVCTFDDFLRDGLLEYLDVNEENNALIALYEGDATSETTHIEIEPF 688

Query: 1570 TILGVCAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAYNQLCRMDTLLYLLVYPQRPLLTT 1391
            TILGV AGLIPYPHHNQSPRNTYQCAMGKQAMGNIA+NQL RMD+LLYLLVYPQRPLLTT
Sbjct: 689  TILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLRRMDSLLYLLVYPQRPLLTT 748

Query: 1390 KTIELVKYDKLGAGQNATVAVMSYSGYDIEDAIVMNKASLDRGFGRCIVMKKYSAVLKKH 1211
            KTIELV YDKLGAGQNATVAVMSYSGYDIEDAIVMNKASLDRGFGRCIVMKKY+A+++KH
Sbjct: 749  KTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKASLDRGFGRCIVMKKYNAIIQKH 808

Query: 1210 PNRTQDRIIGPTSSSGRVDTRCQALDNDGIAAPGEIIRNHDIYINKQTPTKTREEVKNPM 1031
             N T DRI+ P  ++     R Q LD+DGIAAPGEI+R +DIYINKQ+P  TR       
Sbjct: 809  SNDTSDRILRPNRTADTAG-RMQILDDDGIAAPGEILRPYDIYINKQSPIDTRTPKTGSA 867

Query: 1030 A-LPDSEYKFTPQTYKAPEPSVVDKVVLTSNEEDALNIKFLFRQTRRPELGDKFSSRHGQ 854
            A LPDS Y+   Q++K     VVD+VVL S++++ + IKFL R TRRPELGDKFSSRHGQ
Sbjct: 868  ANLPDSAYRSNAQSFKGNGGEVVDRVVLCSDKDNNMCIKFLIRHTRRPELGDKFSSRHGQ 927

Query: 853  KGVCGNIVQQEDFPFSERGICPDLIMNPHGFPSRMTIGKMIELLGGKAGVCCGKFHYGSA 674
            KGVCG IV QEDFPFSE+GICPDLIMNPHGFPSRMT+GKMIELLGGKAGV CG+FHYGSA
Sbjct: 928  KGVCGTIVPQEDFPFSEKGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSA 987

Query: 673  FGEPSGHADKVETICATLVKHGFCYSGKDLIYSGITGYPLQAYIFMGPIYYQKLKHMVVD 494
            FGE SGHADKVETI  TLV  GF YSGKD IYSGITG PLQAYIFMGPIYYQKLKHMV+D
Sbjct: 988  FGERSGHADKVETISETLVSKGFNYSGKDFIYSGITGCPLQAYIFMGPIYYQKLKHMVLD 1047

Query: 493  KMHARASGPRMMLTRQPTEGRSRDGGLRLGEMERDCLIAYGASMMILERLMISSDQFEIQ 314
            KMHAR SGPR+MLTRQPTEGR+R+GGLR+GEMERDCLIAYGASM+I ERLM+SSD FE+Q
Sbjct: 1048 KMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIYERLMLSSDPFEVQ 1107

Query: 313  VCTKCGLLGYYNHKLKMGFCSTCKSGEEIATMKLPYACKLLFQELQSMNIVPRLQLAEA 137
            VCT CGLLGYYNHKLK G CS+CK+G+ I+TMKLPYACKL+ QELQSMNIVPRL+LA+A
Sbjct: 1108 VCTACGLLGYYNHKLKTGICSSCKNGDNISTMKLPYACKLMIQELQSMNIVPRLKLADA 1166


>ref|XP_004951189.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc2-like isoform
            X1 [Setaria italica]
          Length = 1154

 Score = 1568 bits (4059), Expect = 0.0
 Identities = 784/1150 (68%), Positives = 927/1150 (80%), Gaps = 9/1150 (0%)
 Frame = -3

Query: 3562 EDDEVDYENERNLAAPVKTAVDKFQLLPAFLKVRGLVKQHIDSFNFFVNHEIKKIIHAKA 3383
            +D +V   + R+LAAPV   VDKF LLPAFLKVRGLVK+HIDSFN+F+   I+ II  +A
Sbjct: 13   KDKDVPPPSYRSLAAPVANPVDKFALLPAFLKVRGLVKEHIDSFNYFITRGIRNII--QA 70

Query: 3382 NEKVISENNPNFYLKYLDIRVDRPCLEEDLLHVETTPHQCRLRDMTYAAPIKVDVEYTRG 3203
            N ++ + N+PN YL+Y ++ V  P ++ D    E TPH CRL D TY+APIKVD+EYT G
Sbjct: 71   NNRIEARNDPNIYLRYTNVHVGTPSVQVDYKVEEITPHFCRLTDRTYSAPIKVDIEYTVG 130

Query: 3202 NEIVVRKGKGAITIGRLPIMLRSCQCILTGKSETELAKLGECPLDPGGYFVVKGTEKVIL 3023
             +  ++  K  + IG +PIMLRS  CIL GK E ELA+LGECPLDPGGYF+VKGTEKVIL
Sbjct: 131  KQHELQF-KRNVLIGYMPIMLRSYACILHGKDEAELARLGECPLDPGGYFIVKGTEKVIL 189

Query: 3022 IQEQLSKNRILIDTDSKGXXXXXXXXXTHEKKSKTIIIVKHEIFYLKLNTFTEDVPIVIV 2843
            IQEQLSKNRI+IDTDSKG         THE KSKT+I +  E  YL+LN FT+ +PI++V
Sbjct: 190  IQEQLSKNRIIIDTDSKGRVIASVTSSTHEIKSKTVITLDKEKIYLQLNQFTKPIPIIVV 249

Query: 2842 VKAMGIESDQEFVQMVGRDPRFGGILAPSLQNCASYGIYTKELALEYLGTKVKSMRFGNE 2663
            +KAMG+ESDQE VQMVGRDPR+G +L PS+Q CAS  IYT++ AL+Y+  KV     GN+
Sbjct: 250  MKAMGMESDQEVVQMVGRDPRYGDLLFPSIQECASERIYTQQQALQYMDEKVTYPGAGNQ 309

Query: 2662 KSERSKVDEARDILHNVFLANVPVHKFDFRPKCIYVAVMLRRMIEAMLNPEAVDDKDYVG 2483
            K  RSK      IL +VF+A+VPV   +FR KCIY  VMLRRM++A+LN    DDKDYVG
Sbjct: 310  KEGRSK-----SILRDVFIAHVPVKNGNFRQKCIYTGVMLRRMMDAILNANTFDDKDYVG 364

Query: 2482 NKRLELAGVLIALLFEDLFKRMNQEIKSHVDKTFSKQRSTMFDVAKAIPPHIISYGLEHA 2303
            NKRLEL+G LI+LLFEDLFK MN +    ++K   K RS+  D ++ I    I+ GLE A
Sbjct: 365  NKRLELSGQLISLLFEDLFKTMNSQAVELMNKNSDKTRSSPSDFSQLIKHESITSGLERA 424

Query: 2302 ISSGNWNVKRFKMDRKGVTQVVSRLSYIASLGHMTRIQSQFEKTRKVSGPRALQSSQWGM 2123
            IS+GNW++KRF+M RKGV+QV+SRLSY+ASLG+MTRI  QFEKTRK SGPRALQ SQWGM
Sbjct: 425  ISTGNWDIKRFRMHRKGVSQVLSRLSYMASLGYMTRITPQFEKTRKTSGPRALQPSQWGM 484

Query: 2122 LCPCDTPEGEACGLVKNLALMTHVTTDEEEAPLITLCHTLGVEDLSLLSGEELHSRKAYL 1943
            LCPCDTPEGEACGL KNLAL+THVTTD+EE PL+ LC +LGVEDLSLLSGEE+H+  ++L
Sbjct: 485  LCPCDTPEGEACGLTKNLALLTHVTTDQEEGPLMNLCKSLGVEDLSLLSGEEIHAPGSFL 544

Query: 1942 IIFNGLMLGIHRQPKRFAHFLRILRRAGKIGEFVSVFVNDKQRCVYVASDGGRVCRPLVI 1763
            ++FNGL+LG HRQP+ FA+ +R LRR+GKIGEFVS+FVN+KQ C+++ASDGGRVCRPL+I
Sbjct: 545  VMFNGLILGKHRQPQTFANAMRNLRRSGKIGEFVSIFVNEKQHCIHIASDGGRVCRPLII 604

Query: 1762 ADNGISRIKEHHMKELRDGFRTFDDFLREGLVEYLDVNEENNALIALYE-----SEATES 1598
            AD GISR+KEHHMKELRDG R+FDDFLR+GL+EYLDVNEENNALIALYE          S
Sbjct: 605  ADKGISRVKEHHMKELRDGVRSFDDFLRDGLIEYLDVNEENNALIALYEHVDQDDVERSS 664

Query: 1597 TSHIEIEPFTILGVCAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAYNQLCRMDTLLYLLV 1418
             +HIEIEP +ILGV +GLIPYPHHNQSPRNTYQCAMGKQAMGNIAYNQL R D+LLYLLV
Sbjct: 665  ITHIEIEPLSILGVVSGLIPYPHHNQSPRNTYQCAMGKQAMGNIAYNQLFRADSLLYLLV 724

Query: 1417 YPQRPLLTTKTIELVKYDKLGAGQNATVAVMSYSGYDIEDAIVMNKASLDRGFGRCIVMK 1238
            Y QRPLLTTKTIELV YDKLGAGQNATVAVM YSGYDIEDAIVMNK+SLDRGFGRCI MK
Sbjct: 725  YAQRPLLTTKTIELVGYDKLGAGQNATVAVMGYSGYDIEDAIVMNKSSLDRGFGRCIAMK 784

Query: 1237 KYSAVLKKHPNRTQDRIIGP--TSSSGRVDTRCQALDNDGIAAPGEIIRNHDIYINKQTP 1064
            KY+ + + +     DRI  P        V    +ALD DGIAAPG+IIRNHD+Y+NKQ+P
Sbjct: 785  KYTVIKEYYGEGVSDRIAKPQRDKDGALVKQNMRALDEDGIAAPGQIIRNHDVYVNKQSP 844

Query: 1063 TKTREEVKNPMALPDSEYKFTPQTYKA--PEPSVVDKVVLTSNEEDALNIKFLFRQTRRP 890
             K  +       L D +YK +P  YK    E +VVD+V+L S+  + L+IK + R TRRP
Sbjct: 845  -KVIDRRGAGAPLMDRDYKDSPAIYKGVDGETTVVDRVMLCSDTNEKLSIKCIIRHTRRP 903

Query: 889  ELGDKFSSRHGQKGVCGNIVQQEDFPFSERGICPDLIMNPHGFPSRMTIGKMIELLGGKA 710
            E+GDKFSSRHGQKGVCG IVQQEDFPFSERGICPDLIMNPHGFPSRMTIGKMIEL+GGKA
Sbjct: 904  EVGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTIGKMIELIGGKA 963

Query: 709  GVCCGKFHYGSAFGEPSGHADKVETICATLVKHGFCYSGKDLIYSGITGYPLQAYIFMGP 530
            GV CG+FHYGSAFGEPSG+ADKVE I  TL+KHGF Y+GKD +YSGI G+PL+AYIFMGP
Sbjct: 964  GVSCGRFHYGSAFGEPSGNADKVEDISNTLIKHGFSYNGKDFLYSGILGHPLEAYIFMGP 1023

Query: 529  IYYQKLKHMVVDKMHARASGPRMMLTRQPTEGRSRDGGLRLGEMERDCLIAYGASMMILE 350
            IYYQKLKHMV+DKMHARASGPR++LTRQPTEGRSRDGGLRLGEMERDCLIAYGASM+I E
Sbjct: 1024 IYYQKLKHMVLDKMHARASGPRVLLTRQPTEGRSRDGGLRLGEMERDCLIAYGASMLIFE 1083

Query: 349  RLMISSDQFEIQVCTKCGLLGYYNHKLKMGFCSTCKSGEEIATMKLPYACKLLFQELQSM 170
            RL++SSD +++QVC KCGLLGYYN+KLK  +CS CK+GE +A M+LPYACKLLFQELQSM
Sbjct: 1084 RLLLSSDPYQVQVCRKCGLLGYYNYKLKTSYCSMCKNGENMAKMRLPYACKLLFQELQSM 1143

Query: 169  NIVPRLQLAE 140
            N+VPRL+L E
Sbjct: 1144 NVVPRLKLTE 1153