BLASTX nr result
ID: Ephedra25_contig00011196
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Ephedra25_contig00011196
(1837 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|EOY24612.1| DNA-directed RNA polymerase II subunit RPB1-B, pu... 186 2e-44
ref|XP_004298730.1| PREDICTED: DNA-directed RNA polymerase D sub... 186 2e-44
ref|NP_176490.2| DNA-directed RNA polymerase IV subunit 1 [Arabi... 181 7e-43
ref|XP_006391790.1| hypothetical protein EUTSA_v10023214mg [Eutr... 181 9e-43
gb|EMJ12114.1| hypothetical protein PRUPE_ppa000278mg [Prunus pe... 177 1e-41
ref|XP_004511611.1| PREDICTED: DNA-directed RNA polymerase D sub... 176 4e-41
ref|XP_004511607.1| PREDICTED: DNA-directed RNA polymerase D sub... 176 4e-41
ref|XP_004147993.1| PREDICTED: DNA-directed RNA polymerase D sub... 176 4e-41
gb|ESW30448.1| hypothetical protein PHAVU_002G153700g [Phaseolus... 174 2e-40
gb|ESW30447.1| hypothetical protein PHAVU_002G153700g [Phaseolus... 174 2e-40
ref|XP_006573757.1| PREDICTED: DNA-directed RNA polymerase IV su... 173 3e-40
ref|XP_006573755.1| PREDICTED: DNA-directed RNA polymerase IV su... 173 3e-40
ref|XP_006573754.1| PREDICTED: DNA-directed RNA polymerase IV su... 173 3e-40
ref|XP_006573756.1| PREDICTED: DNA-directed RNA polymerase IV su... 172 4e-40
ref|XP_002886441.1| NRPD1a [Arabidopsis lyrata subsp. lyrata] gi... 171 7e-40
ref|XP_006300646.1| hypothetical protein CARUB_v10019657mg [Caps... 170 2e-39
ref|XP_006358859.1| PREDICTED: DNA-directed RNA polymerase IV su... 169 5e-39
ref|XP_006358858.1| PREDICTED: DNA-directed RNA polymerase IV su... 169 5e-39
gb|EEC85033.1| hypothetical protein OsI_32338 [Oryza sativa Indi... 166 2e-38
gb|EEE70198.1| hypothetical protein OsJ_30285 [Oryza sativa Japo... 166 3e-38
>gb|EOY24612.1| DNA-directed RNA polymerase II subunit RPB1-B, putative [Theobroma
cacao]
Length = 1484
Score = 186 bits (473), Expect = 2e-44
Identities = 129/403 (32%), Positives = 198/403 (49%), Gaps = 4/403 (0%)
Frame = +2
Query: 101 GVQGVRSVVILG-DQYSIAADTNSKNGELVLLVEISSDISALNSWKLLLKHCEAVTDIID 277
G ++ V IL D+ ++ S GEL L V +S D W +L+ C + D+ID
Sbjct: 1112 GFPEIKKVDILWKDRLKVSKPHKSSCGELYLRVFVSGDFGITKLWGVLMNDCLQIMDMID 1171
Query: 278 WNRSYPVNPYGVSHSLGIEAAKKLCLQRLECFVKMVEKPVHRRHLTLVTDCLCLTGAFNC 457
W RS+P N + + GI+A K L L+ + K + HL +V +CL TG F
Sbjct: 1172 WTRSHPDNINQLCLAYGIDAGWKFFLNNLKSAISDTGKTILNEHLLVVANCLSATGEFVG 1231
Query: 458 LKNAALKKTVTKGLVEAPFMQACLTNPKKILVEAAKKGMQDNLLGSLDSLIWGNAPLLGT 637
L + L++ V +PFMQAC +NP V+AAK G D+L G++D+L WG P +GT
Sbjct: 1232 LNSKGLRQQREHAYVSSPFMQACFSNPSASFVKAAKTGASDDLQGTIDALAWGRIPHIGT 1291
Query: 638 SGAFEILLNKEEMPSCSEPIVVDEILEITAKMGCKDKPLQSNRNQKTAYDRSKRDSRRVM 817
G F+I+ + ++ +EP+ V ++L + S++ Q ++ K +
Sbjct: 1292 GGQFDIIYSVKDQ-RLAEPVDVYKLLGSSI----------SSQKQDVEFEVPK----ALN 1336
Query: 818 EKKAKYNSYVQNDKVSIPPKESNRSSNHILGDGWQMQSKNKDTKSLKSILHVSSKVKNSE 997
K KY S + + LGD + K +TK +SI + + +
Sbjct: 1337 FKSEKYGSLLID----------------ALGDSASEELKKIETKR-RSIWRELLTLDDIQ 1379
Query: 998 GKQEVLPRTLREILHSRYMVGQSLSETDKSLVENVLQHHPHYEEKVGNGLQGIKIGKNPD 1177
L R LR ILH +Y + LSE D + + L HP +EK+G+G Q IK+G +P+
Sbjct: 1380 R----LSRALRNILH-KYPIDHRLSEADWNTLMMALYFHPRRDEKIGSGAQEIKVGYHPE 1434
Query: 1178 FPDTRCFMVERKDGSCVDFSYLKCL---SRLNAPGRTNAMKEK 1297
+ RCF + R DG+ VDFSY KC+ + AP R + K K
Sbjct: 1435 HANARCFSLVRTDGTIVDFSYHKCVLGALEIIAPHRAKSYKSK 1477
>ref|XP_004298730.1| PREDICTED: DNA-directed RNA polymerase D subunit 1-like [Fragaria
vesca subsp. vesca]
Length = 1438
Score = 186 bits (473), Expect = 2e-44
Identities = 121/386 (31%), Positives = 192/386 (49%), Gaps = 4/386 (1%)
Frame = +2
Query: 158 DTNSKNGELVLLVEISSDI-SALNSWKLLLKHCEAVTDIIDWNRSYPVNPYGVSHSLGIE 334
D +GEL L V +S W +L+ C V D+IDW+RS+P N + + + GI+
Sbjct: 1092 DRPGSSGELCLRVSMSGKTRKGTTLWNMLMDDCIPVMDMIDWSRSHPDNVHDICTAYGID 1151
Query: 335 AAKKLCLQRLECFVKMVEKPVHRRHLTLVTDCLCLTGAFNCLKNAALKKTVTKGLVEAPF 514
+K L +LE K V K + +HL LV DCL TG F L + + + V APF
Sbjct: 1152 VGQKHFLNKLESATKDVGKTILPQHLLLVADCLSATGEFVSLNAKGIGQQLEHASVIAPF 1211
Query: 515 MQACLTNPKKILVEAAKKGMQDNLLGSLDSLIWGNAPLLGTSGAFEILLNKEEMPSCSEP 694
MQAC + P LV+AAK G+ DNL GSLD+L WGN P LG+ G F+I+ +K P S+P
Sbjct: 1212 MQACFSTPGPCLVKAAKVGVVDNLQGSLDALTWGNTPSLGSGGQFDIIFSKG--PVSSKP 1269
Query: 695 IVVDEILEITAKMGCKDKPLQSNRNQKTAYDRSKRDSRRVMEKKAKYNSYVQNDKVSIPP 874
I V ++L + + + +N D S + + N Y+
Sbjct: 1270 IKVYDLL--------SSQIITNPQNGFEMSDAPIHLSDKFVAPNMYKNGYL--------- 1312
Query: 875 KESNRSSNHILGDGWQMQSKNKDTKSLKSILHVSSKVKNSEGKQEVLPRTLREILHSRYM 1054
++ + +L + +Q ++ +++LK+IL +Y
Sbjct: 1313 RKWESITKSVLRENLTIQDIDRLSQALKNIL-------------------------QKYD 1347
Query: 1055 VGQSLSETDKSLVENVLQHHPHYEEKVGNGLQGIKIGKNPDFPDTRCFMVERKDGSCVDF 1234
V + +++ DK ++ VL+ HPH + K+G G++ +K+G +PD + RCFM+ R DG+ D
Sbjct: 1348 VNERINDMDKQVLMMVLRFHPHGDRKIGLGIKEVKVGHHPDHENVRCFMLVRTDGTIEDV 1407
Query: 1235 SYLKCLS---RLNAPGRTNAMKEKHM 1303
SY KC+ + AP R + ++M
Sbjct: 1408 SYHKCICGAYDIIAPHRAKGYRVRYM 1433
>ref|NP_176490.2| DNA-directed RNA polymerase IV subunit 1 [Arabidopsis thaliana]
gi|334183598|ref|NP_001185298.1| DNA-directed RNA
polymerase IV subunit 1 [Arabidopsis thaliana]
gi|75335311|sp|Q9LQ02.1|NRPD1_ARATH RecName:
Full=DNA-directed RNA polymerase IV subunit 1; AltName:
Full=DNA-directed RNA polymerase D subunit 1;
Short=AtNRPD1a; Short=Nuclear RNA polymerase D 1a;
AltName: Full=Protein RNA-DIRECTED DNA METHYLATION
DEFECTIVE 3; AltName: Full=Protein SILENCING DEFECTIVE 4;
AltName: Full=Protein SILENCING MOVEMENT DEFICIENT 2;
AltName: Full=RNA polymerase IV subunit 1a; Short=POL IV
1a gi|8493592|gb|AAF75815.1|AC011000_18 Contains
similarity to DNA-directed RNA Polymerase alpha-subunit
from Methanococcus jannaschii gi|3915860 and contains
Ribosomal protein L36 PF|00444 and RNA-Polymerase
alpha-subunit PF|00623 domains. EST gb|AA597311 comes
from this gene [Arabidopsis thaliana]
gi|12323252|gb|AAG51604.1|AC010795_8 RNA polymerase IIA
largest subunit, putative; 12353-6556 [Arabidopsis
thaliana] gi|59939208|gb|AAX12372.1| DNA-directed RNA
polymerase beta subunit [Arabidopsis thaliana]
gi|68300852|gb|AAY89363.1| RNA polymerase IV largest
subunit [Arabidopsis thaliana]
gi|332195920|gb|AEE34041.1| nuclear RNA polymerase D1A
[Arabidopsis thaliana] gi|332195921|gb|AEE34042.1|
nuclear RNA polymerase D1A [Arabidopsis thaliana]
Length = 1453
Score = 181 bits (460), Expect = 7e-43
Identities = 132/407 (32%), Positives = 200/407 (49%), Gaps = 6/407 (1%)
Frame = +2
Query: 101 GVQGVRSVVILGDQYSIAADTNSKN--GELVLLVEISSDISALNSWKLLLKHCEAVTDII 274
G QG++ V IL A N + GEL L V + D N W LL+ C + D+I
Sbjct: 1078 GDQGIKKVNILWTDRPKAPKRNGNHLAGELYLKVTMYGDRGKRNCWTALLETCLPIMDMI 1137
Query: 275 DWNRSYPVNPYGVSHSLGIEAAKKLCLQRLECFVKMVEKPVHRRHLTLVTDCLCLTGAFN 454
DW RS+P N GI+A + + + LE V K + R HL LV D L +TG F
Sbjct: 1138 DWGRSHPDNIRQCCSVYGIDAGRSIFVANLESAVSDTGKEILREHLLLVADSLSVTGEFV 1197
Query: 455 CLKNAALKKTVTKGLVEAPFMQACLTNPKKILVEAAKKGMQDNLLGSLDSLIWGNAPLLG 634
L K APF QAC ++P + ++AAK+G++D+L GS+D+L WG P G
Sbjct: 1198 ALNAKGWSKQRQVESTPAPFTQACFSSPSQCFLKAAKEGVRDDLQGSIDALAWGKVPGFG 1257
Query: 635 TSGAFEILLNKEEMPSCSEPIVVDEILEITAKMGCKDKPLQSNRNQKTAYDRSKRDSRRV 814
T FEI+++ ++ + P+ V ++L T M
Sbjct: 1258 TGDQFEIIIS-PKVHGFTTPVDVYDLLSSTKTM--------------------------- 1289
Query: 815 MEKKAKYNSYVQNDKVSIPPKESNRSSNHILGDGWQMQSKNKDTKSL-KSILHVSSKVKN 991
+ NS ++DK ++ P +L + K D K + S+L KN
Sbjct: 1290 ----RRTNSAPKSDKATVQP-------FGLLHSAFLKDIKVLDGKGIPMSLLRTIFTWKN 1338
Query: 992 SEGKQEVLPRTLREILHSRYMVGQSLSETDKSLVENVLQHHPHYEEKVGNGLQGIKIGKN 1171
E+L ++L+ ILHS Y + + L+E D+ LV+ VLQ HP+ EK+G G++GI++ K+
Sbjct: 1339 I----ELLSQSLKRILHS-YEINELLNERDEGLVKMVLQLHPNSVEKIGPGVKGIRVAKS 1393
Query: 1172 PDFPDTRCFMVERKDGSCVDFSYLKCL---SRLNAPGRTNAMKEKHM 1303
D+ CF V R DG+ DFSY KC+ +++ AP + N K K++
Sbjct: 1394 -KHGDSCCFEVVRIDGTFEDFSYHKCVLGATKIIAPKKMNFYKSKYL 1439
>ref|XP_006391790.1| hypothetical protein EUTSA_v10023214mg [Eutrema salsugineum]
gi|557088296|gb|ESQ29076.1| hypothetical protein
EUTSA_v10023214mg [Eutrema salsugineum]
Length = 1465
Score = 181 bits (459), Expect = 9e-43
Identities = 130/390 (33%), Positives = 190/390 (48%), Gaps = 8/390 (2%)
Frame = +2
Query: 158 DTNSKNGELVLLVEISSDISALNSWKLLLKHCEAVTDIIDWNRSYPVNPYGVSHSLGIEA 337
+ NS GEL L V + D N W LL+ C V D+IDW RS+P N GI+A
Sbjct: 1107 NVNSLPGELFLKVTMYGDGGKKNFWSALLETCLPVMDVIDWTRSHPDNIRQCCSVYGIDA 1166
Query: 338 AKKLCLQRLECFVKMVEKPVHRRHLTLVTDCLCLTGAFNCLKNAALKKTVTKGLVEAPFM 517
+ + L LE V K + R HL LV DCL +TG F L + K APF
Sbjct: 1167 GRSIFLANLESAVSDTGKTILREHLLLVADCLSVTGEFVALNSKGWGKQRQVESTPAPFT 1226
Query: 518 QACLTNPKKILVEAAKKGMQDNLLGSLDSLIWGNAPLLGTSGAFEILLNKEEMPSCSEPI 697
QAC ++P + ++AAK+G++D L GS+D+L WG P GT FEI+++ + S P+
Sbjct: 1227 QACFSSPSQCFLKAAKEGVRDELQGSIDALAWGKVPCFGTGDQFEIIISPKN-HGFSTPV 1285
Query: 698 VVDEILEITAKMGCKDKPLQSNRNQKTAYDRSKRDSRRVMEKKAKYNSYVQNDKVSIPP- 874
V + L TA + KT R+ NS ++DKV++ P
Sbjct: 1286 DVFDFLSSTATL------------PKTGKVRAT-------------NSMPKSDKVTVQPF 1320
Query: 875 ----KESNRSSNHILGDGWQMQSKNKDTKSLKSILHVSSKVKNSEGKQEVLPRTLREILH 1042
+++ N + G G M L++IL + E L R+L+ IL+
Sbjct: 1321 PLLDNAISKAINTLDGKGLAM-------SQLRNIL--------TWDGIEKLSRSLKRILY 1365
Query: 1043 SRYMVGQSLSETDKSLVENVLQHHPHYEEKVGNGLQGIKIGKNPDFPDTRCFMVERKDGS 1222
+ Y + L+E D+ + L HP+ +EK+G G QGIK+ N + RCF V R DG+
Sbjct: 1366 N-YEIDAPLNEKDERHLMMALLFHPNRDEKIGPGFQGIKVA-NSKHGNARCFEVVRTDGT 1423
Query: 1223 CVDFSYLKCL---SRLNAPGRTNAMKEKHM 1303
DFSY KC+ + + AP + N K K++
Sbjct: 1424 TEDFSYHKCVLGATEIIAPTKVNFYKSKYL 1453
>gb|EMJ12114.1| hypothetical protein PRUPE_ppa000278mg [Prunus persica]
Length = 1356
Score = 177 bits (449), Expect = 1e-41
Identities = 124/405 (30%), Positives = 198/405 (48%), Gaps = 4/405 (0%)
Frame = +2
Query: 101 GVQGVRSVVIL-GDQYSIAADTNSKNGELVLLVEISSDISALNSWKLLLKHCEAVTDIID 277
G V+ V IL D + + +GEL L V +S W +L+ +C + D+ID
Sbjct: 994 GFLEVKKVDILWNDHPRESKKIHGSSGELYLRVSMSGKTGRRRLWSMLMDNCLQIMDLID 1053
Query: 278 WNRSYPVNPYGVSHSLGIEAAKKLCLQRLECFVKMVEKPVHRRHLTLVTDCLCLTGAFNC 457
W+RS+P N + + GI+A K L LE + K + +HL LV DCL TG F
Sbjct: 1054 WSRSHPDNVHDYCIAYGIDAGWKYFLNNLETAANDIGKDILPQHLILVADCLSATGEFVG 1113
Query: 458 LKNAALKKTVTKGLVEAPFMQACLTNPKKILVEAAKKGMQDNLLGSLDSLIWGNAPLLGT 637
L + + V +PF+QAC ++P ++AAK G+ D L GS+++L WGN P GT
Sbjct: 1114 LNAKGIAQQKGHTSVSSPFVQACFSSPGACFIKAAKGGVVDELHGSVEALAWGNTPPSGT 1173
Query: 638 SGAFEILLNKEEMPSCSEPIVVDEILEITAKMGCKDKPLQSNRNQKTAYDRSKRDSRRVM 817
F+IL +KE + + S+P+ ++L Q + +++ A++ S
Sbjct: 1174 GRQFDILYSKEGL-NLSKPLNPYDLL-----------GSQISSSRENAFETS-------- 1213
Query: 818 EKKAKYNSYVQNDKVSIPPKESNRSSNHILGDGWQMQSKNKDTKSLKSILHVSSKVKNSE 997
KA N+ + D SI ++S ++ + K T++LK IL
Sbjct: 1214 --KAWNNTLDKCDVTSIGLEKSESVFKSVIRKYLTINDIQKWTQTLKRILR--------- 1262
Query: 998 GKQEVLPRTLREILHSRYMVGQSLSETDKSLVENVLQHHPHYEEKVGNGLQGIKIGKNPD 1177
+Y + +SL+E DKS+++ L HPH +K+G+G+Q IK+G++P
Sbjct: 1263 ----------------KYDINESLTEGDKSILKMALHFHPHKVDKMGSGVQDIKVGQHPK 1306
Query: 1178 FPDTRCFMVERKDGSCVDFSYLKCL---SRLNAPGRTNAMKEKHM 1303
+ RCFM+ R D + DFSY KC+ + AP R + + K M
Sbjct: 1307 HENARCFMLVRIDRTEEDFSYHKCVLGALEIVAPERAKSYRSKWM 1351
>ref|XP_004511611.1| PREDICTED: DNA-directed RNA polymerase D subunit 1-like isoform X5
[Cicer arietinum]
Length = 1474
Score = 176 bits (445), Expect = 4e-41
Identities = 117/385 (30%), Positives = 187/385 (48%), Gaps = 1/385 (0%)
Frame = +2
Query: 101 GVQGVRSVVILGDQYSIAADT-NSKNGELVLLVEISSDISALNSWKLLLKHCEAVTDIID 277
G+ ++ V IL S + + N +GEL L V +SSD W L+ HC + +ID
Sbjct: 1099 GIFEIKKVDILWKDLSKGSKSYNGSSGELYLRVTMSSDSDRGTFWGALINHCHRIMPMID 1158
Query: 278 WNRSYPVNPYGVSHSLGIEAAKKLCLQRLECFVKMVEKPVHRRHLTLVTDCLCLTGAFNC 457
W RS+P N + + GI+A + L L + +HL LV + L +G F
Sbjct: 1159 WARSHPDNIHHFCSAFGIDAGWQHFLHNLSSATSDTGTSILPKHLRLVANSLSASGEFVG 1218
Query: 458 LKNAALKKTVTKGLVEAPFMQACLTNPKKILVEAAKKGMQDNLLGSLDSLIWGNAPLLGT 637
L + + + V +PF+QAC +NP ++AAK G+ DNL G+LD L WGN +GT
Sbjct: 1219 LNSKGMARQRNHASVSSPFVQACFSNPGSTFLKAAKSGVVDNLQGTLDGLAWGNCLSMGT 1278
Query: 638 SGAFEILLNKEEMPSCSEPIVVDEILEITAKMGCKDKPLQSNRNQKTAYDRSKRDSRRVM 817
SG F+++ + E++ ++ + V ++LE + D+ + ++++ + D
Sbjct: 1279 SGQFDVMYS-EKVQELAKSVDVYDLLETSFDQ--LDQEINTSQSNNYSSD---------- 1325
Query: 818 EKKAKYNSYVQNDKVSIPPKESNRSSNHILGDGWQMQSKNKDTKSLKSILHVSSKVKNSE 997
K NS ++ K PKE + W+ +N T + L +S+
Sbjct: 1326 ----KCNSQFRHKKGRYAPKEPKQ---------WKSVIRNFMTANDIQKLTSASR----- 1367
Query: 998 GKQEVLPRTLREILHSRYMVGQSLSETDKSLVENVLQHHPHYEEKVGNGLQGIKIGKNPD 1177
+ ++Y + Q LSE DK + VL HP EK+G+G Q IK+G +P
Sbjct: 1368 ------------FILNKYPIDQILSERDKLTIMKVLHFHPRRNEKLGSGPQHIKVGWHPK 1415
Query: 1178 FPDTRCFMVERKDGSCVDFSYLKCL 1252
F D+RCF + R DG+ DFSY KC+
Sbjct: 1416 FTDSRCFFIIRTDGTVEDFSYRKCI 1440
>ref|XP_004511607.1| PREDICTED: DNA-directed RNA polymerase D subunit 1-like isoform X1
[Cicer arietinum] gi|502160026|ref|XP_004511608.1|
PREDICTED: DNA-directed RNA polymerase D subunit 1-like
isoform X2 [Cicer arietinum]
gi|502160029|ref|XP_004511609.1| PREDICTED: DNA-directed
RNA polymerase D subunit 1-like isoform X3 [Cicer
arietinum] gi|502160032|ref|XP_004511610.1| PREDICTED:
DNA-directed RNA polymerase D subunit 1-like isoform X4
[Cicer arietinum]
Length = 1475
Score = 176 bits (445), Expect = 4e-41
Identities = 117/385 (30%), Positives = 187/385 (48%), Gaps = 1/385 (0%)
Frame = +2
Query: 101 GVQGVRSVVILGDQYSIAADT-NSKNGELVLLVEISSDISALNSWKLLLKHCEAVTDIID 277
G+ ++ V IL S + + N +GEL L V +SSD W L+ HC + +ID
Sbjct: 1100 GIFEIKKVDILWKDLSKGSKSYNGSSGELYLRVTMSSDSDRGTFWGALINHCHRIMPMID 1159
Query: 278 WNRSYPVNPYGVSHSLGIEAAKKLCLQRLECFVKMVEKPVHRRHLTLVTDCLCLTGAFNC 457
W RS+P N + + GI+A + L L + +HL LV + L +G F
Sbjct: 1160 WARSHPDNIHHFCSAFGIDAGWQHFLHNLSSATSDTGTSILPKHLRLVANSLSASGEFVG 1219
Query: 458 LKNAALKKTVTKGLVEAPFMQACLTNPKKILVEAAKKGMQDNLLGSLDSLIWGNAPLLGT 637
L + + + V +PF+QAC +NP ++AAK G+ DNL G+LD L WGN +GT
Sbjct: 1220 LNSKGMARQRNHASVSSPFVQACFSNPGSTFLKAAKSGVVDNLQGTLDGLAWGNCLSMGT 1279
Query: 638 SGAFEILLNKEEMPSCSEPIVVDEILEITAKMGCKDKPLQSNRNQKTAYDRSKRDSRRVM 817
SG F+++ + E++ ++ + V ++LE + D+ + ++++ + D
Sbjct: 1280 SGQFDVMYS-EKVQELAKSVDVYDLLETSFDQ--LDQEINTSQSNNYSSD---------- 1326
Query: 818 EKKAKYNSYVQNDKVSIPPKESNRSSNHILGDGWQMQSKNKDTKSLKSILHVSSKVKNSE 997
K NS ++ K PKE + W+ +N T + L +S+
Sbjct: 1327 ----KCNSQFRHKKGRYAPKEPKQ---------WKSVIRNFMTANDIQKLTSASR----- 1368
Query: 998 GKQEVLPRTLREILHSRYMVGQSLSETDKSLVENVLQHHPHYEEKVGNGLQGIKIGKNPD 1177
+ ++Y + Q LSE DK + VL HP EK+G+G Q IK+G +P
Sbjct: 1369 ------------FILNKYPIDQILSERDKLTIMKVLHFHPRRNEKLGSGPQHIKVGWHPK 1416
Query: 1178 FPDTRCFMVERKDGSCVDFSYLKCL 1252
F D+RCF + R DG+ DFSY KC+
Sbjct: 1417 FTDSRCFFIIRTDGTVEDFSYRKCI 1441
>ref|XP_004147993.1| PREDICTED: DNA-directed RNA polymerase D subunit 1-like [Cucumis
sativus] gi|449494342|ref|XP_004159519.1| PREDICTED: LOW
QUALITY PROTEIN: DNA-directed RNA polymerase D subunit
1-like [Cucumis sativus]
Length = 1469
Score = 176 bits (445), Expect = 4e-41
Identities = 125/384 (32%), Positives = 189/384 (49%), Gaps = 7/384 (1%)
Frame = +2
Query: 173 NGELVLLVEISSDISALNSWKLLLKHCEAVTDIIDWNRSYPVNPYGVSHSLGIEAAKKLC 352
+GEL L V +S + ++ W L+ +C + D+IDW RS+P N + + + GI++ K
Sbjct: 1124 HGELYLRVTMSGEGNS-RFWATLMNNCLPIMDLIDWTRSHPDNTHSLCLAYGIDSGWKYF 1182
Query: 353 LQRLECFVKMVEKPVHRRHLTLVTDCLCLTGAFNCLKNAALKKTVTKGLVEAPFMQACLT 532
L LE V K + HL LV++ L TG F L L LV+ PFMQAC +
Sbjct: 1183 LNSLESATLDVGKTIRLEHLLLVSNSLSATGEFVGLNVKGLTHQREHALVKTPFMQACFS 1242
Query: 533 NPKKILVEAAKKGMQDNLLGSLDSLIWGNAPLLGTSGAFEILLNKEEMPSCSEPIVVDEI 712
+P +++AAK G++DNL GSLD+L WG P LGT G F+IL + + ++P+ V +
Sbjct: 1243 SPGACMIKAAKAGIKDNLSGSLDALAWGRMPSLGTGGQFDILYSGKG-HELNKPVDVYNL 1301
Query: 713 LEITAKMGCKDKPLQSNRNQKTAYDRSKRDSRRVMEKKAKYNSYVQN-DKVSIPPKESNR 889
L Q T K N+ +++ DK +I K S +
Sbjct: 1302 L----------------GGQSTC---------------EKQNTKIESLDKNTISEKYSAQ 1330
Query: 890 SSNHILGDGWQMQSKNKDTKSLKSILHVSSKVKN---SEGKQEVLPRTLREILHSRYMVG 1060
+++ K LK + VS + + + L LR ILH +Y +
Sbjct: 1331 ---------LMLKNGGSTIKGLKRLDSVSKSILRKFLTLNDIQKLSFALRTILH-KYSLN 1380
Query: 1061 QSLSETDKSLVENVLQHHPHYEEKVGNGLQGIKIGKNPDFPDTRCFMVERKDGSCVDFSY 1240
+ L+E DKS + L HPH +EK+G G Q IK+G + + +TRCF++ R DG+ DFSY
Sbjct: 1381 ERLNEVDKSTLMMALYFHPHRDEKIGVGAQDIKVGSHSKYQNTRCFVLIRSDGTTEDFSY 1440
Query: 1241 LKCL---SRLNAPGRTNAMKEKHM 1303
KC+ + AP R + K M
Sbjct: 1441 HKCVLGALEIIAPHRVKGYQSKWM 1464
>gb|ESW30448.1| hypothetical protein PHAVU_002G153700g [Phaseolus vulgaris]
Length = 1464
Score = 174 bits (440), Expect = 2e-40
Identities = 117/387 (30%), Positives = 187/387 (48%), Gaps = 1/387 (0%)
Frame = +2
Query: 101 GVQGVRSVVILGDQYSIAADT-NSKNGELVLLVEISSDISALNSWKLLLKHCEAVTDIID 277
G ++ V IL + S ++ N +GEL L V ++S + W +L+ HC + IID
Sbjct: 1090 GFMDIKKVDILWNNQSKGTNSYNGSSGELYLRVTVASSGNTGRFWGVLVNHCHKIMQIID 1149
Query: 278 WNRSYPVNPYGVSHSLGIEAAKKLCLQRLECFVKMVEKPVHRRHLTLVTDCLCLTGAFNC 457
W RS+P N +S + GI+ A + + L + K + +HL L+ + + +G F
Sbjct: 1150 WPRSHPDNINYLSSAYGIDVAWQYYYKSLASAISDTGKSILPKHLRLLANSMSASGEFVG 1209
Query: 458 LKNAALKKTVTKGLVEAPFMQACLTNPKKILVEAAKKGMQDNLLGSLDSLIWGNAPLLGT 637
L + + V +PF+QAC +NP + ++AAK + DNL GSLD+L WGN P +GT
Sbjct: 1210 LNAKGMAQQRQHASVSSPFVQACFSNPGRSFIKAAKSELTDNLQGSLDALAWGNCPSMGT 1269
Query: 638 SGAFEILLNKEEMPSCSEPIVVDEILEITAKMGCKDKPLQSNRNQKTAYDRSKRDSRRVM 817
SG F+I+ + E+ + + V ++LE + DKP N K + S +
Sbjct: 1270 SGLFDIIYS-EKGHEVDKAVDVYKLLEASF-----DKP-----NNKIGFHAHNNSSGKCG 1318
Query: 818 EKKAKYNSYVQNDKVSIPPKESNRSSNHILGDGWQMQSKNKDTKSLKSILHVSSKVKNSE 997
+ N Y + G W+ L++ + V+ K +
Sbjct: 1319 SEFRHKNGYAFKE-----------------GKQWK--------NILRNFVTVNDIQKLTT 1353
Query: 998 GKQEVLPRTLREILHSRYMVGQSLSETDKSLVENVLQHHPHYEEKVGNGLQGIKIGKNPD 1177
+ +L ++Y + + LSE D+S + VL HP EK+G G Q IK+G +P
Sbjct: 1354 ASRCIL---------NKYEIDELLSEFDRSTILRVLNFHPRRSEKLGIGPQDIKVGWHPK 1404
Query: 1178 FPDTRCFMVERKDGSCVDFSYLKCLSR 1258
F D+RCF + R DG+ DFSY KC+ R
Sbjct: 1405 FKDSRCFHIVRTDGTVEDFSYRKCILR 1431
>gb|ESW30447.1| hypothetical protein PHAVU_002G153700g [Phaseolus vulgaris]
Length = 1463
Score = 174 bits (440), Expect = 2e-40
Identities = 117/387 (30%), Positives = 187/387 (48%), Gaps = 1/387 (0%)
Frame = +2
Query: 101 GVQGVRSVVILGDQYSIAADT-NSKNGELVLLVEISSDISALNSWKLLLKHCEAVTDIID 277
G ++ V IL + S ++ N +GEL L V ++S + W +L+ HC + IID
Sbjct: 1089 GFMDIKKVDILWNNQSKGTNSYNGSSGELYLRVTVASSGNTGRFWGVLVNHCHKIMQIID 1148
Query: 278 WNRSYPVNPYGVSHSLGIEAAKKLCLQRLECFVKMVEKPVHRRHLTLVTDCLCLTGAFNC 457
W RS+P N +S + GI+ A + + L + K + +HL L+ + + +G F
Sbjct: 1149 WPRSHPDNINYLSSAYGIDVAWQYYYKSLASAISDTGKSILPKHLRLLANSMSASGEFVG 1208
Query: 458 LKNAALKKTVTKGLVEAPFMQACLTNPKKILVEAAKKGMQDNLLGSLDSLIWGNAPLLGT 637
L + + V +PF+QAC +NP + ++AAK + DNL GSLD+L WGN P +GT
Sbjct: 1209 LNAKGMAQQRQHASVSSPFVQACFSNPGRSFIKAAKSELTDNLQGSLDALAWGNCPSMGT 1268
Query: 638 SGAFEILLNKEEMPSCSEPIVVDEILEITAKMGCKDKPLQSNRNQKTAYDRSKRDSRRVM 817
SG F+I+ + E+ + + V ++LE + DKP N K + S +
Sbjct: 1269 SGLFDIIYS-EKGHEVDKAVDVYKLLEASF-----DKP-----NNKIGFHAHNNSSGKCG 1317
Query: 818 EKKAKYNSYVQNDKVSIPPKESNRSSNHILGDGWQMQSKNKDTKSLKSILHVSSKVKNSE 997
+ N Y + G W+ L++ + V+ K +
Sbjct: 1318 SEFRHKNGYAFKE-----------------GKQWK--------NILRNFVTVNDIQKLTT 1352
Query: 998 GKQEVLPRTLREILHSRYMVGQSLSETDKSLVENVLQHHPHYEEKVGNGLQGIKIGKNPD 1177
+ +L ++Y + + LSE D+S + VL HP EK+G G Q IK+G +P
Sbjct: 1353 ASRCIL---------NKYEIDELLSEFDRSTILRVLNFHPRRSEKLGIGPQDIKVGWHPK 1403
Query: 1178 FPDTRCFMVERKDGSCVDFSYLKCLSR 1258
F D+RCF + R DG+ DFSY KC+ R
Sbjct: 1404 FKDSRCFHIVRTDGTVEDFSYRKCILR 1430
>ref|XP_006573757.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1-like isoform X4
[Glycine max]
Length = 1381
Score = 173 bits (438), Expect = 3e-40
Identities = 124/385 (32%), Positives = 186/385 (48%), Gaps = 1/385 (0%)
Frame = +2
Query: 101 GVQGVRSVVIL-GDQYSIAADTNSKNGELVLLVEISSDISALNSWKLLLKHCEAVTDIID 277
G V+ V IL +Q + N +GEL L V +SS+ S W +LLK C + IID
Sbjct: 1017 GFLDVKKVDILWNNQSKVTNSRNGFSGELYLRVTLSSEGSRGRFWGVLLKLCHKIMHIID 1076
Query: 278 WNRSYPVNPYGVSHSLGIEAAKKLCLQRLECFVKMVEKPVHRRHLTLVTDCLCLTGAFNC 457
W RS+ N S + GI+A + L C K + +HL LV + L +G F
Sbjct: 1077 WTRSHTDNINHFSSAYGIDAGWQYFFNSLACATSDTGKSILPKHLCLVANSLSCSGEFVG 1136
Query: 458 LKNAALKKTVTKGLVEAPFMQACLTNPKKILVEAAKKGMQDNLLGSLDSLIWGNAPLLGT 637
L + V +PF+QAC NP ++AAK G DNL GSLD L WGN +GT
Sbjct: 1137 LNAKGMALQRKHASVSSPFVQACFANPGSCFIKAAKSGATDNLQGSLDGLAWGNCLSMGT 1196
Query: 638 SGAFEILLNKEEMPSCSEPIVVDEILEITAKMGCKDKPLQSNRNQKTAYDRSKRDSRRVM 817
SG F+++ + E+ ++ + V E+LE + DKP + ++
Sbjct: 1197 SGMFDVIYS-EKGHQVAKSVDVYELLEASF-----DKP-----------------NNKIG 1233
Query: 818 EKKAKYNSYVQNDKVSIPPKESNRSSNHILGDGWQMQSKNKDTKSLKSILHVSSKVKNSE 997
KY+S DK E + + L +G Q ++ L++ + V+ K +
Sbjct: 1234 THLHKYSS----DKCG---SEFRHKNGYALKEGKQWKT------ILRNFVTVNDIQKLTF 1280
Query: 998 GKQEVLPRTLREILHSRYMVGQSLSETDKSLVENVLQHHPHYEEKVGNGLQGIKIGKNPD 1177
+ +L ++Y + + LSE+D+S + VL HPH EK G G Q IK+G +P
Sbjct: 1281 ASRCIL---------NKYSIDELLSESDRSTMLRVLNFHPHKSEKFGIGPQDIKVGWHPK 1331
Query: 1178 FPDTRCFMVERKDGSCVDFSYLKCL 1252
+ D+RCF + R DG+ DFSY KC+
Sbjct: 1332 YKDSRCFHIIRTDGTVEDFSYRKCI 1356
>ref|XP_006573755.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1-like isoform X2
[Glycine max]
Length = 1457
Score = 173 bits (438), Expect = 3e-40
Identities = 124/385 (32%), Positives = 186/385 (48%), Gaps = 1/385 (0%)
Frame = +2
Query: 101 GVQGVRSVVIL-GDQYSIAADTNSKNGELVLLVEISSDISALNSWKLLLKHCEAVTDIID 277
G V+ V IL +Q + N +GEL L V +SS+ S W +LLK C + IID
Sbjct: 1093 GFLDVKKVDILWNNQSKVTNSRNGFSGELYLRVTLSSEGSRGRFWGVLLKLCHKIMHIID 1152
Query: 278 WNRSYPVNPYGVSHSLGIEAAKKLCLQRLECFVKMVEKPVHRRHLTLVTDCLCLTGAFNC 457
W RS+ N S + GI+A + L C K + +HL LV + L +G F
Sbjct: 1153 WTRSHTDNINHFSSAYGIDAGWQYFFNSLACATSDTGKSILPKHLCLVANSLSCSGEFVG 1212
Query: 458 LKNAALKKTVTKGLVEAPFMQACLTNPKKILVEAAKKGMQDNLLGSLDSLIWGNAPLLGT 637
L + V +PF+QAC NP ++AAK G DNL GSLD L WGN +GT
Sbjct: 1213 LNAKGMALQRKHASVSSPFVQACFANPGSCFIKAAKSGATDNLQGSLDGLAWGNCLSMGT 1272
Query: 638 SGAFEILLNKEEMPSCSEPIVVDEILEITAKMGCKDKPLQSNRNQKTAYDRSKRDSRRVM 817
SG F+++ + E+ ++ + V E+LE + DKP + ++
Sbjct: 1273 SGMFDVIYS-EKGHQVAKSVDVYELLEASF-----DKP-----------------NNKIG 1309
Query: 818 EKKAKYNSYVQNDKVSIPPKESNRSSNHILGDGWQMQSKNKDTKSLKSILHVSSKVKNSE 997
KY+S DK E + + L +G Q ++ L++ + V+ K +
Sbjct: 1310 THLHKYSS----DKCG---SEFRHKNGYALKEGKQWKT------ILRNFVTVNDIQKLTF 1356
Query: 998 GKQEVLPRTLREILHSRYMVGQSLSETDKSLVENVLQHHPHYEEKVGNGLQGIKIGKNPD 1177
+ +L ++Y + + LSE+D+S + VL HPH EK G G Q IK+G +P
Sbjct: 1357 ASRCIL---------NKYSIDELLSESDRSTMLRVLNFHPHKSEKFGIGPQDIKVGWHPK 1407
Query: 1178 FPDTRCFMVERKDGSCVDFSYLKCL 1252
+ D+RCF + R DG+ DFSY KC+
Sbjct: 1408 YKDSRCFHIIRTDGTVEDFSYRKCI 1432
>ref|XP_006573754.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1-like isoform X1
[Glycine max]
Length = 1458
Score = 173 bits (438), Expect = 3e-40
Identities = 124/385 (32%), Positives = 186/385 (48%), Gaps = 1/385 (0%)
Frame = +2
Query: 101 GVQGVRSVVIL-GDQYSIAADTNSKNGELVLLVEISSDISALNSWKLLLKHCEAVTDIID 277
G V+ V IL +Q + N +GEL L V +SS+ S W +LLK C + IID
Sbjct: 1094 GFLDVKKVDILWNNQSKVTNSRNGFSGELYLRVTLSSEGSRGRFWGVLLKLCHKIMHIID 1153
Query: 278 WNRSYPVNPYGVSHSLGIEAAKKLCLQRLECFVKMVEKPVHRRHLTLVTDCLCLTGAFNC 457
W RS+ N S + GI+A + L C K + +HL LV + L +G F
Sbjct: 1154 WTRSHTDNINHFSSAYGIDAGWQYFFNSLACATSDTGKSILPKHLCLVANSLSCSGEFVG 1213
Query: 458 LKNAALKKTVTKGLVEAPFMQACLTNPKKILVEAAKKGMQDNLLGSLDSLIWGNAPLLGT 637
L + V +PF+QAC NP ++AAK G DNL GSLD L WGN +GT
Sbjct: 1214 LNAKGMALQRKHASVSSPFVQACFANPGSCFIKAAKSGATDNLQGSLDGLAWGNCLSMGT 1273
Query: 638 SGAFEILLNKEEMPSCSEPIVVDEILEITAKMGCKDKPLQSNRNQKTAYDRSKRDSRRVM 817
SG F+++ + E+ ++ + V E+LE + DKP + ++
Sbjct: 1274 SGMFDVIYS-EKGHQVAKSVDVYELLEASF-----DKP-----------------NNKIG 1310
Query: 818 EKKAKYNSYVQNDKVSIPPKESNRSSNHILGDGWQMQSKNKDTKSLKSILHVSSKVKNSE 997
KY+S DK E + + L +G Q ++ L++ + V+ K +
Sbjct: 1311 THLHKYSS----DKCG---SEFRHKNGYALKEGKQWKT------ILRNFVTVNDIQKLTF 1357
Query: 998 GKQEVLPRTLREILHSRYMVGQSLSETDKSLVENVLQHHPHYEEKVGNGLQGIKIGKNPD 1177
+ +L ++Y + + LSE+D+S + VL HPH EK G G Q IK+G +P
Sbjct: 1358 ASRCIL---------NKYSIDELLSESDRSTMLRVLNFHPHKSEKFGIGPQDIKVGWHPK 1408
Query: 1178 FPDTRCFMVERKDGSCVDFSYLKCL 1252
+ D+RCF + R DG+ DFSY KC+
Sbjct: 1409 YKDSRCFHIIRTDGTVEDFSYRKCI 1433
>ref|XP_006573756.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1-like isoform X3
[Glycine max]
Length = 1455
Score = 172 bits (436), Expect = 4e-40
Identities = 123/385 (31%), Positives = 186/385 (48%), Gaps = 1/385 (0%)
Frame = +2
Query: 101 GVQGVRSVVIL-GDQYSIAADTNSKNGELVLLVEISSDISALNSWKLLLKHCEAVTDIID 277
G V+ V IL +Q + N +GEL L V +SS+ S W +LLK C + IID
Sbjct: 1094 GFLDVKKVDILWNNQSKVTNSRNGFSGELYLRVTLSSEGSRGRFWGVLLKLCHKIMHIID 1153
Query: 278 WNRSYPVNPYGVSHSLGIEAAKKLCLQRLECFVKMVEKPVHRRHLTLVTDCLCLTGAFNC 457
W RS+ N S + GI+A + L C K + +HL LV + L +G F
Sbjct: 1154 WTRSHTDNINHFSSAYGIDAGWQYFFNSLACATSDTGKSILPKHLCLVANSLSCSGEFVG 1213
Query: 458 LKNAALKKTVTKGLVEAPFMQACLTNPKKILVEAAKKGMQDNLLGSLDSLIWGNAPLLGT 637
L + V +PF+QAC NP ++AAK G DNL GSLD L WGN +GT
Sbjct: 1214 LNAKGMALQRKHASVSSPFVQACFANPGSCFIKAAKSGATDNLQGSLDGLAWGNCLSMGT 1273
Query: 638 SGAFEILLNKEEMPSCSEPIVVDEILEITAKMGCKDKPLQSNRNQKTAYDRSKRDSRRVM 817
SG F+++ +++ ++ + V E+LE + DKP + ++
Sbjct: 1274 SGMFDVIYSEK----VAKSVDVYELLEASF-----DKP-----------------NNKIG 1307
Query: 818 EKKAKYNSYVQNDKVSIPPKESNRSSNHILGDGWQMQSKNKDTKSLKSILHVSSKVKNSE 997
KY+S DK E + + L +G Q ++ L++ + V+ K +
Sbjct: 1308 THLHKYSS----DKCG---SEFRHKNGYALKEGKQWKT------ILRNFVTVNDIQKLTF 1354
Query: 998 GKQEVLPRTLREILHSRYMVGQSLSETDKSLVENVLQHHPHYEEKVGNGLQGIKIGKNPD 1177
+ +L ++Y + + LSE+D+S + VL HPH EK G G Q IK+G +P
Sbjct: 1355 ASRCIL---------NKYSIDELLSESDRSTMLRVLNFHPHKSEKFGIGPQDIKVGWHPK 1405
Query: 1178 FPDTRCFMVERKDGSCVDFSYLKCL 1252
+ D+RCF + R DG+ DFSY KC+
Sbjct: 1406 YKDSRCFHIIRTDGTVEDFSYRKCI 1430
>ref|XP_002886441.1| NRPD1a [Arabidopsis lyrata subsp. lyrata] gi|297332282|gb|EFH62700.1|
NRPD1a [Arabidopsis lyrata subsp. lyrata]
Length = 1456
Score = 171 bits (434), Expect = 7e-40
Identities = 129/407 (31%), Positives = 196/407 (48%), Gaps = 6/407 (1%)
Frame = +2
Query: 101 GVQGVRSVVILGDQYSIAADTNSKN--GELVLLVEISSDISALNSWKLLLKHCEAVTDII 274
G Q ++ V IL A N + GEL L V + D N W LL+ C + D+I
Sbjct: 1079 GSQEIKKVDILWTDRPKAPKRNGDHLAGELYLRVTMYGDRGKRNCWTALLETCLPIMDMI 1138
Query: 275 DWNRSYPVNPYGVSHSLGIEAAKKLCLQRLECFVKMVEKPVHRRHLTLVTDCLCLTGAFN 454
DW+RS+P N GI+A + + + LE V K + + HL LV D L +TG F
Sbjct: 1139 DWSRSHPDNIRQCCSVYGIDAGRSIFVANLESAVSDTGKTILKEHLLLVADSLSVTGEFV 1198
Query: 455 CLKNAALKKTVTKGLVEAPFMQACLTNPKKILVEAAKKGMQDNLLGSLDSLIWGNAPLLG 634
L K APF QAC ++P + ++AAK+G++D+L GS+D+L WG P G
Sbjct: 1199 ALNAKGWSKQRQVESTPAPFTQACFSSPSQCFLKAAKEGVRDDLQGSIDALAWGKVPGFG 1258
Query: 635 TSGAFEILLNKEEMPSCSEPIVVDEILEITAKMGCKDKPLQSNRNQKTAYDRSKRDSRRV 814
T FEI+++ ++ + P+ V ++L T
Sbjct: 1259 TGDQFEIIIS-PKVHGFTTPVNVYDLLSST------------------------------ 1287
Query: 815 MEKKAKYNSYVQNDKVSIPPKESNRSSNHILGDGWQMQSKNKDTKSLK-SILHVSSKVKN 991
K NS ++DKV++ P + +LG + K D K + S L +N
Sbjct: 1288 ---PPKTNSAPKSDKVTVQPFD-------LLGTAFLKGIKVLDGKGISMSRLRTIFTWEN 1337
Query: 992 SEGKQEVLPRTLREILHSRYMVGQSLSETDKSLVENVLQHHPHYEEKVGNGLQGIKIGKN 1171
E L ++L+ IL S Y + L+ D+ LV VL HP+ +K+G GL+GI++ K+
Sbjct: 1338 I----EKLSQSLKRILTS-YEINDPLNGRDEELVMMVLHLHPNSADKIGPGLKGIRVAKS 1392
Query: 1172 PDFPDTRCFMVERKDGSCVDFSYLKCL---SRLNAPGRTNAMKEKHM 1303
D+RCF V R DG+ DFSY KC+ +++ AP + N K K++
Sbjct: 1393 -KHGDSRCFEVVRIDGTFEDFSYHKCVLGATKIIAPKKVNLYKSKYL 1438
>ref|XP_006300646.1| hypothetical protein CARUB_v10019657mg [Capsella rubella]
gi|482569356|gb|EOA33544.1| hypothetical protein
CARUB_v10019657mg [Capsella rubella]
Length = 1459
Score = 170 bits (431), Expect = 2e-39
Identities = 129/406 (31%), Positives = 197/406 (48%), Gaps = 5/406 (1%)
Frame = +2
Query: 101 GVQGVRSVVILGDQYSIAADT--NSKNGELVLLVEISSDISALNSWKLLLKHCEAVTDII 274
G Q ++ V IL A N GEL L V ++ D N W L++ C + D+I
Sbjct: 1084 GYQEIKKVDILWTDRPKAPKMYGNHLAGELYLRVTMNGDRGKRNCWSSLVETCLPIMDMI 1143
Query: 275 DWNRSYPVNPYGVSHSLGIEAAKKLCLQRLECFVKMVEKPVHRRHLTLVTDCLCLTGAFN 454
DW+RS+P N GI+A + + + LE V K + R HL L D L +TG F
Sbjct: 1144 DWSRSHPDNIRQCCSVYGIDAGRSIFVANLESAVSDTGKTILREHLLLAADSLSITGEFV 1203
Query: 455 CLKNAALKKTVTKGLVEAPFMQACLTNPKKILVEAAKKGMQDNLLGSLDSLIWGNAPLLG 634
L K APF QAC ++P + ++AAK+G+ D L GS+D+L WG P G
Sbjct: 1204 ALNAKGWSKQRQVESTPAPFTQACFSSPSQCFLKAAKEGVVDQLQGSIDTLAWGKVPGFG 1263
Query: 635 TSGAFEILLNKEEMPSCSEPIVVDEILEITAKMGCKDKPLQSNRNQKTAYDRSKRDSRRV 814
T F+I+++ ++ + P+ V E+L S+ KT R+
Sbjct: 1264 TGDQFDIIIS-PKVHGFTTPVDVYELL--------------SSIPPKTVTKRAT------ 1302
Query: 815 MEKKAKYNSYVQNDKVSIPPKESNRSSNHILGDGWQMQSKNKDTKSLKSILHVSSKVKNS 994
+S ++DK + P + +L + K + K + S+ + +
Sbjct: 1303 -------SSAPKSDKFKVQPFD-------MLDTAFPKAFKALNGKGI-SLFQLRTMFTWE 1347
Query: 995 EGKQEVLPRTLREILHSRYMVGQSLSETDKSLVENVLQHHPHYEEKVGNGLQGIKIGKNP 1174
+ E L R+L+ IL++ Y V LSE+D++ V VL HP+ EK+G G QGI++G N
Sbjct: 1348 D--VENLSRSLKHILNN-YEVNAPLSESDENFVSMVLCFHPNRAEKIGPGFQGIRVG-NS 1403
Query: 1175 DFPDTRCFMVERKDGSCVDFSYLKCL---SRLNAPGRTNAMKEKHM 1303
D+RCF V R D + DFSY KC+ +++ APGR N K K++
Sbjct: 1404 KHGDSRCFEVVRIDDTTEDFSYHKCVLGATKIIAPGRMNFYKSKYL 1449
>ref|XP_006358859.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1-like isoform X2
[Solanum tuberosum]
Length = 1233
Score = 169 bits (427), Expect = 5e-39
Identities = 123/386 (31%), Positives = 183/386 (47%), Gaps = 2/386 (0%)
Frame = +2
Query: 101 GVQGVRSVVILGDQY-SIAADTNSKNGELVLLVEISSDISALNSWKLLLKHCEAVTDIID 277
G + V IL + S + + GEL L V +S + W L+ C + D+ID
Sbjct: 865 GFSAFKKVDILWKELPSPSKSSRGSTGELYLQVFMSESCDRIKFWNALVDSCLQIRDLID 924
Query: 278 WNRSYPVNPYGVSHSLGIEAAKKLCLQRLECFVKMVEKPVHRRHLTLVTDCLCLTGAFNC 457
W RSYP + + ++ + GI+ A + L +L V K + HL L D L TG F
Sbjct: 925 WERSYPDDVHDLTVAYGIDVAWEYFLCKLHSAVSETGKKILPEHLVLAADSLTATGEFVP 984
Query: 458 LKNAALKKTVTKGLVEAPFMQACLTNPKKILVEAAKKGMQDNLLGSLDSLIWGNAPLLGT 637
L L V +PFMQAC +NP V AAK G+ DNL GSL+SL WG P +GT
Sbjct: 985 LSAKGLTLQRKAAGVISPFMQACFSNPGDSFVRAAKMGLSDNLQGSLESLAWGKTPSIGT 1044
Query: 638 SGAFEILLNKEEMPSCSEPIVVDEILEITAKMGCKDKPLQSNRNQKTAYDRSKRDSRRVM 817
+F+I+ + + +EPI V + LQ++ T + D M
Sbjct: 1045 GSSFDIIYSGKGYEP-AEPIDVYTL-------------LQNHVTSGTPKVKVTLDEDGGM 1090
Query: 818 EKKAKYNSYVQNDKVSIPPKESNRSSNHILGDGWQMQSKNKDTKSLKSILHVSSKVKNSE 997
+ K+ + D ++ K KS SI + S + ++
Sbjct: 1091 DGKSLARRLDRLDDLN-----------------------KKSCKSEWSITKLRSFISFND 1127
Query: 998 GKQEVLPRTLREILHSRYMVGQSLSETDKSLVENVLQHHPHYEEKVGNGL-QGIKIGKNP 1174
K+ L ++L+++L S+Y + + L+E DK + LQ HP EK+G G Q IKIG +
Sbjct: 1128 IKK--LSQSLKQML-SKYAIDRELNEADKCIAMMALQFHPRRNEKIGKGAPQEIKIGYHK 1184
Query: 1175 DFPDTRCFMVERKDGSCVDFSYLKCL 1252
++ D+RCFM+ R DGS DFSY KC+
Sbjct: 1185 EYEDSRCFMLVRSDGSVEDFSYRKCM 1210
>ref|XP_006358858.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1-like isoform X1
[Solanum tuberosum]
Length = 1446
Score = 169 bits (427), Expect = 5e-39
Identities = 123/386 (31%), Positives = 183/386 (47%), Gaps = 2/386 (0%)
Frame = +2
Query: 101 GVQGVRSVVILGDQY-SIAADTNSKNGELVLLVEISSDISALNSWKLLLKHCEAVTDIID 277
G + V IL + S + + GEL L V +S + W L+ C + D+ID
Sbjct: 1078 GFSAFKKVDILWKELPSPSKSSRGSTGELYLQVFMSESCDRIKFWNALVDSCLQIRDLID 1137
Query: 278 WNRSYPVNPYGVSHSLGIEAAKKLCLQRLECFVKMVEKPVHRRHLTLVTDCLCLTGAFNC 457
W RSYP + + ++ + GI+ A + L +L V K + HL L D L TG F
Sbjct: 1138 WERSYPDDVHDLTVAYGIDVAWEYFLCKLHSAVSETGKKILPEHLVLAADSLTATGEFVP 1197
Query: 458 LKNAALKKTVTKGLVEAPFMQACLTNPKKILVEAAKKGMQDNLLGSLDSLIWGNAPLLGT 637
L L V +PFMQAC +NP V AAK G+ DNL GSL+SL WG P +GT
Sbjct: 1198 LSAKGLTLQRKAAGVISPFMQACFSNPGDSFVRAAKMGLSDNLQGSLESLAWGKTPSIGT 1257
Query: 638 SGAFEILLNKEEMPSCSEPIVVDEILEITAKMGCKDKPLQSNRNQKTAYDRSKRDSRRVM 817
+F+I+ + + +EPI V + LQ++ T + D M
Sbjct: 1258 GSSFDIIYSGKGYEP-AEPIDVYTL-------------LQNHVTSGTPKVKVTLDEDGGM 1303
Query: 818 EKKAKYNSYVQNDKVSIPPKESNRSSNHILGDGWQMQSKNKDTKSLKSILHVSSKVKNSE 997
+ K+ + D ++ K KS SI + S + ++
Sbjct: 1304 DGKSLARRLDRLDDLN-----------------------KKSCKSEWSITKLRSFISFND 1340
Query: 998 GKQEVLPRTLREILHSRYMVGQSLSETDKSLVENVLQHHPHYEEKVGNGL-QGIKIGKNP 1174
K+ L ++L+++L S+Y + + L+E DK + LQ HP EK+G G Q IKIG +
Sbjct: 1341 IKK--LSQSLKQML-SKYAIDRELNEADKCIAMMALQFHPRRNEKIGKGAPQEIKIGYHK 1397
Query: 1175 DFPDTRCFMVERKDGSCVDFSYLKCL 1252
++ D+RCFM+ R DGS DFSY KC+
Sbjct: 1398 EYEDSRCFMLVRSDGSVEDFSYRKCM 1423
>gb|EEC85033.1| hypothetical protein OsI_32338 [Oryza sativa Indica Group]
Length = 1384
Score = 166 bits (421), Expect = 2e-38
Identities = 106/361 (29%), Positives = 169/361 (46%)
Frame = +2
Query: 170 KNGELVLLVEISSDISALNSWKLLLKHCEAVTDIIDWNRSYPVNPYGVSHSLGIEAAKKL 349
++ ELV+ V +S W L C + ++IDW RS P Y + S GI++A K
Sbjct: 1034 QDSELVVKVGMSEHCKTGKFWATLQNACIPIMELIDWERSRPERVYDIFCSYGIDSAWKY 1093
Query: 350 CLQRLECFVKMVEKPVHRRHLTLVTDCLCLTGAFNCLKNAALKKTVTKGLVEAPFMQACL 529
++ L + + VHR+HL +V DCL ++G F+ L + LK+ + +PF +AC
Sbjct: 1094 FVESLRSTTDAIGRNVHRQHLLVVADCLSISGQFHGLSSQGLKQQRAWLSISSPFSEACF 1153
Query: 530 TNPKKILVEAAKKGMQDNLLGSLDSLIWGNAPLLGTSGAFEILLNKEEMPSCSEPIVVDE 709
+ P + AAK+ DNL G+LD++ WG P GTSG F++L + +
Sbjct: 1154 SRPAYSFINAAKRDSVDNLSGALDAIAWGKEPCAGTSGPFKVLYSGKS------------ 1201
Query: 710 ILEITAKMGCKDKPLQSNRNQKTAYDRSKRDSRRVMEKKAKYNSYVQNDKVSIPPKESNR 889
Q + K YD + +EK ++Y Q + + +
Sbjct: 1202 ---------------QKTKQNKNIYDFLHNPEVQALEKNFM-DTYKQRTEKPSKQRSAFS 1245
Query: 890 SSNHILGDGWQMQSKNKDTKSLKSILHVSSKVKNSEGKQEVLPRTLREILHSRYMVGQSL 1069
S + +G + K S I +N + L LRE Y + + +
Sbjct: 1246 SKGNATINGGTISVNQKFLDSKVGIW------ENIIDMRTCLQNMLRE-----YTLNEVV 1294
Query: 1070 SETDKSLVENVLQHHPHYEEKVGNGLQGIKIGKNPDFPDTRCFMVERKDGSCVDFSYLKC 1249
+E DKS + L+ HP +K+G G++ IKIG NP P++RCF+V+R D + DFSY KC
Sbjct: 1295 TEQDKSCLIEALKFHPRGYDKIGVGIREIKIGVNPGHPNSRCFIVQRSDDTSADFSYNKC 1354
Query: 1250 L 1252
+
Sbjct: 1355 V 1355
>gb|EEE70198.1| hypothetical protein OsJ_30285 [Oryza sativa Japonica Group]
Length = 1384
Score = 166 bits (420), Expect = 3e-38
Identities = 105/361 (29%), Positives = 169/361 (46%)
Frame = +2
Query: 170 KNGELVLLVEISSDISALNSWKLLLKHCEAVTDIIDWNRSYPVNPYGVSHSLGIEAAKKL 349
++ ELV+ V +S W L C + ++IDW RS P Y + S GI++A K
Sbjct: 1034 QDSELVVKVGMSEHCKTGKFWATLQNACIPIMELIDWERSRPERVYDIFCSYGIDSAWKY 1093
Query: 350 CLQRLECFVKMVEKPVHRRHLTLVTDCLCLTGAFNCLKNAALKKTVTKGLVEAPFMQACL 529
++ L + + +HR+HL +V DCL ++G F+ L + LK+ + +PF +AC
Sbjct: 1094 FVESLRSTTDAIGRNIHRQHLLVVADCLSISGQFHGLSSQGLKQQRAWLSISSPFSEACF 1153
Query: 530 TNPKKILVEAAKKGMQDNLLGSLDSLIWGNAPLLGTSGAFEILLNKEEMPSCSEPIVVDE 709
+ P + AAK+ DNL G+LD++ WG P GTSG F++L + +
Sbjct: 1154 SRPAYSFINAAKRDSVDNLSGALDAIAWGKEPCAGTSGPFKVLYSGKS------------ 1201
Query: 710 ILEITAKMGCKDKPLQSNRNQKTAYDRSKRDSRRVMEKKAKYNSYVQNDKVSIPPKESNR 889
Q + K YD + +EK ++Y Q + + +
Sbjct: 1202 ---------------QKTKQNKNIYDFLHNPEVQALEKNFM-DTYKQRTEKPSKQRSAFS 1245
Query: 890 SSNHILGDGWQMQSKNKDTKSLKSILHVSSKVKNSEGKQEVLPRTLREILHSRYMVGQSL 1069
S + +G + K S I +N + L LRE Y + + +
Sbjct: 1246 SKGNATINGGTISVNQKFLDSKVGIW------ENIIDMRTCLQNMLRE-----YTLNEVV 1294
Query: 1070 SETDKSLVENVLQHHPHYEEKVGNGLQGIKIGKNPDFPDTRCFMVERKDGSCVDFSYLKC 1249
+E DKS + L+ HP +K+G G++ IKIG NP P++RCF+V+R D + DFSY KC
Sbjct: 1295 TEQDKSCLIEALKFHPRGYDKIGVGIREIKIGVNPGHPNSRCFIVQRSDDTSADFSYNKC 1354
Query: 1250 L 1252
+
Sbjct: 1355 V 1355