BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ephedra25_contig00010945
         (1286 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAY78476.1| RNA polymerase IV second largest subunit [Ginkgo ...   546   e-153
gb|AFW59623.1| putative DNA-directed RNA polymerase subunit fami...   424   e-116
ref|XP_002447199.1| hypothetical protein SORBIDRAFT_06g030300 [S...   424   e-116
ref|XP_002468227.1| hypothetical protein SORBIDRAFT_01g042100 [S...   423   e-116
gb|EEE61785.1| hypothetical protein OsJ_16357 [Oryza sativa Japo...   422   e-115
gb|EEC78111.1| hypothetical protein OsI_17620 [Oryza sativa Indi...   422   e-115
ref|NP_001054041.1| Os04g0641000 [Oryza sativa Japonica Group] g...   422   e-115
emb|CAJ86030.1| B0414F07.4 [Oryza sativa Indica Group]                422   e-115
emb|CAE05960.2| OSJNBa0063C18.1 [Oryza sativa Japonica Group]         422   e-115
emb|CAD41847.2| OSJNBb0079B02.6 [Oryza sativa Japonica Group]         422   e-115
gb|ADB19859.1| mutant required to maintain repression 7-2/ RNA p...   422   e-115
ref|NP_001177299.1| required to maintain repression7 [Zea mays] ...   422   e-115
gb|AAY45706.1| RNA polymerase IV second largest subunit [Zea mays]    421   e-115
ref|XP_006652896.1| PREDICTED: DNA-directed RNA polymerases IV a...   419   e-114
gb|EMS61833.1| DNA-directed RNA polymerase D subunit 2a [Triticu...   414   e-113
ref|XP_003564776.1| PREDICTED: DNA-directed RNA polymerase D sub...   413   e-113
gb|AFW57180.1| putative DNA-directed RNA polymerase subunit fami...   412   e-112
ref|XP_003577435.1| PREDICTED: DNA-directed RNA polymerase D sub...   412   e-112
ref|XP_002445131.1| hypothetical protein SORBIDRAFT_07g004600 [S...   410   e-112
ref|XP_003603295.1| DNA-directed RNA polymerase subunit beta [Me...   407   e-111

>gb|AAY78476.1| RNA polymerase IV second largest subunit [Ginkgo biloba]
          Length = 651

 Score =  546 bits (1408), Expect = e-153
 Identities = 254/327 (77%), Positives = 290/327 (88%)
 Frame = -1

Query: 1286 GKPSGSNLKIDKLDDDGLPFISSDLYSGDVLIGKVGPQPSDSNFSLKLKHTEKGRVDQVL 1107
            GKP   NLK+DKLDDDGLPFI + L SGD+LIGKVGPQPSD NFSLKLKHTEKGRVDQV+
Sbjct: 323  GKPQTGNLKVDKLDDDGLPFIGASLVSGDILIGKVGPQPSDVNFSLKLKHTEKGRVDQVV 382

Query: 1106 MTTNDCGKKYAKVRLREMRVPSVGDKFSSMHGQKGVVGFIEEQENMPFTKQGIVPDLIIN 927
            M+ ND  KK+A+V LRE+R PS+GDKFSSMHGQKGVVGFIEEQENMPFT++GIVPDLIIN
Sbjct: 383  MSANDDDKKFARVCLREVRSPSLGDKFSSMHGQKGVVGFIEEQENMPFTQEGIVPDLIIN 442

Query: 926  PHAFPSRQTPGQLFECXXXXXXXXXXXXXXATPFRPMTVEYLTERLHKCGYQQWGMEKMY 747
            PHAFPSRQTPGQLFEC              ATP+ P+T++Y+TE+LH+CGYQQWG E+MY
Sbjct: 443  PHAFPSRQTPGQLFECAFGKAIASSGVVGDATPYGPVTLQYITEQLHRCGYQQWGKEQMY 502

Query: 746  NGRTGSPLQMKIFIGPTFYQRLIHMAEDKMKYRNHGPVHPLTRQPVHDRKRHGGVKFGEM 567
            NGRTG  LQ KIFIGPT+YQRLIHMAEDKMKYRNHGPVHPLTRQPV DRKRHGGVKFGEM
Sbjct: 503  NGRTGCKLQSKIFIGPTYYQRLIHMAEDKMKYRNHGPVHPLTRQPVADRKRHGGVKFGEM 562

Query: 566  ERDCMLAHGATSNLLERLFYLSDFSTMHICSKCQMVAPVVLENGVRGPHCNFCKTAKHVV 387
            ERDCMLAHGAT+NLLERLF+LSDFSTMH+C +C+ +A V+L +GVRGP+C FCKTAKH+V
Sbjct: 563  ERDCMLAHGATANLLERLFFLSDFSTMHVCRECRNMATVILRDGVRGPYCPFCKTAKHIV 622

Query: 386  KVNVPYACKLLYQELFAMGICLKFETE 306
            KVNVPYACK+LYQELF++G+CL+F+TE
Sbjct: 623  KVNVPYACKMLYQELFSIGMCLRFQTE 649


>gb|AFW59623.1| putative DNA-directed RNA polymerase subunit family protein [Zea
            mays]
          Length = 2163

 Score =  424 bits (1091), Expect = e-116
 Identities = 202/332 (60%), Positives = 249/332 (75%), Gaps = 5/332 (1%)
 Frame = -1

Query: 1286 GKPSGSNLKIDKLDDDGLPFISSDLYSGDVLIGKVGPQPSDSNFSLKLKHTEKGRVDQVL 1107
            GK      ++D LDDDGLP+I + L + D++IGKV     D   S+KLKHTEKG V +VL
Sbjct: 1832 GKTESKRGRVDNLDDDGLPYIGASLQTNDIVIGKVSESGEDH--SIKLKHTEKGMVQKVL 1889

Query: 1106 MTTNDCGKKYAKVRLREMRVPSVGDKFSSMHGQKGVVGFIEEQENMPFTKQGIVPDLIIN 927
            ++ ND GK +A V LR++R P +GDKFSSMHGQKGVVGF+E QEN PFT  GIVPD++IN
Sbjct: 1890 LSANDEGKNFAVVTLRQVRTPCLGDKFSSMHGQKGVVGFLESQENFPFTHDGIVPDIVIN 1949

Query: 926  PHAFPSRQTPGQLFECXXXXXXXXXXXXXXATPFRPMTVEYLTERLHKCGYQQWGMEKMY 747
            PHAFP+RQTPGQL E               ATPF   +V+ + E+LHK GY +WG E + 
Sbjct: 1950 PHAFPTRQTPGQLLEAALGKGIACKGTMRYATPFTTASVDVIAEQLHKAGYSRWGAENVL 2009

Query: 746  NGRTGSPLQMKIFIGPTFYQRLIHMAEDKMKYRNHGPVHPLTRQPVHDRKRHGGVKFGEM 567
            NGRTG  ++  +F+GPTFYQRLIHM+EDK+KYRN GPVHPLTRQPV DRKR GGVKFGEM
Sbjct: 2010 NGRTGERMKSLVFMGPTFYQRLIHMSEDKVKYRNTGPVHPLTRQPVADRKRFGGVKFGEM 2069

Query: 566  ERDCMLAHGATSNLLERLFYLSDFSTMHICSKCQMVAPVVLEN-----GVRGPHCNFCKT 402
            ERDC+LAHG+ +NL ERLF LSDFS MHIC  C+ VA VV+ +      +RGP+C FCK+
Sbjct: 2070 ERDCLLAHGSAANLHERLFMLSDFSQMHICQTCERVANVVMRSVPGGKKIRGPYCGFCKS 2129

Query: 401  AKHVVKVNVPYACKLLYQELFAMGICLKFETE 306
            ++++V++NVPY  KLLYQELF+MGICLKFETE
Sbjct: 2130 SENIVRINVPYGAKLLYQELFSMGICLKFETE 2161


>ref|XP_002447199.1| hypothetical protein SORBIDRAFT_06g030300 [Sorghum bicolor]
            gi|241938382|gb|EES11527.1| hypothetical protein
            SORBIDRAFT_06g030300 [Sorghum bicolor]
          Length = 1239

 Score =  424 bits (1090), Expect = e-116
 Identities = 201/332 (60%), Positives = 250/332 (75%), Gaps = 5/332 (1%)
 Frame = -1

Query: 1286 GKPSGSNLKIDKLDDDGLPFISSDLYSGDVLIGKVGPQPSDSNFSLKLKHTEKGRVDQVL 1107
            GK      ++D LDDDGLP+I + L + D++IGKV     D   S+KLKHTEKG V +VL
Sbjct: 908  GKTESKRGRVDNLDDDGLPYIGASLQTNDIVIGKVSESGEDH--SIKLKHTEKGMVQKVL 965

Query: 1106 MTTNDCGKKYAKVRLREMRVPSVGDKFSSMHGQKGVVGFIEEQENMPFTKQGIVPDLIIN 927
            ++ ND GK +A V LR++R P +GDKFSSMHGQKGVVGF+E QEN PFT +GIVPD++IN
Sbjct: 966  LSANDEGKNFAVVTLRQVRTPCLGDKFSSMHGQKGVVGFLESQENFPFTHEGIVPDIVIN 1025

Query: 926  PHAFPSRQTPGQLFECXXXXXXXXXXXXXXATPFRPMTVEYLTERLHKCGYQQWGMEKMY 747
            PHAFP+RQTPGQL E               ATPF   +V+ + E+LHK GY +WG E + 
Sbjct: 1026 PHAFPTRQTPGQLLEAALGKGIACKGTMRYATPFTTASVDVIAEQLHKAGYSRWGAENVL 1085

Query: 746  NGRTGSPLQMKIFIGPTFYQRLIHMAEDKMKYRNHGPVHPLTRQPVHDRKRHGGVKFGEM 567
            NGRTG  +Q  +F+GPTFYQRLIHM+EDK+K+RN GPVHPLTRQPV DRKR GGVKFGEM
Sbjct: 1086 NGRTGERMQSLVFMGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGVKFGEM 1145

Query: 566  ERDCMLAHGATSNLLERLFYLSDFSTMHICSKCQMVAPVVLEN-----GVRGPHCNFCKT 402
            ERDC+LAHG+ +NL ERLF LSDFS MHIC  C+ VA VV+ +      +RGP+C FCK+
Sbjct: 1146 ERDCLLAHGSAANLHERLFMLSDFSQMHICQTCERVANVVMRSVPGGKKIRGPYCGFCKS 1205

Query: 401  AKHVVKVNVPYACKLLYQELFAMGICLKFETE 306
            ++++V++NVPY  KLLYQELF+MGICLKF+TE
Sbjct: 1206 SENIVRINVPYGAKLLYQELFSMGICLKFDTE 1237


>ref|XP_002468227.1| hypothetical protein SORBIDRAFT_01g042100 [Sorghum bicolor]
            gi|241922081|gb|EER95225.1| hypothetical protein
            SORBIDRAFT_01g042100 [Sorghum bicolor]
          Length = 1228

 Score =  423 bits (1087), Expect = e-116
 Identities = 201/332 (60%), Positives = 250/332 (75%), Gaps = 5/332 (1%)
 Frame = -1

Query: 1286 GKPSGSNLKIDKLDDDGLPFISSDLYSGDVLIGKVGPQPSDSNFSLKLKHTEKGRVDQVL 1107
            GK      ++D LDDDGLP+I + L + D++IGKV     D   S+KLKHTEKG V +VL
Sbjct: 897  GKTESKRGRVDNLDDDGLPYIGASLQTNDIVIGKVSESGEDH--SIKLKHTEKGMVQKVL 954

Query: 1106 MTTNDCGKKYAKVRLREMRVPSVGDKFSSMHGQKGVVGFIEEQENMPFTKQGIVPDLIIN 927
            ++ ND GK +A V LR++R P +GDKFSSMHGQKGVVGF+E QEN PFT +GIVPD++IN
Sbjct: 955  LSANDEGKNFAVVTLRQVRTPCLGDKFSSMHGQKGVVGFLESQENFPFTHKGIVPDIVIN 1014

Query: 926  PHAFPSRQTPGQLFECXXXXXXXXXXXXXXATPFRPMTVEYLTERLHKCGYQQWGMEKMY 747
            PHAFP+RQTPGQL E               ATPF   +V+ + E+LH+ GY +WG E + 
Sbjct: 1015 PHAFPTRQTPGQLLEAALGKGIACKGTMRYATPFTTASVDVIAEQLHRAGYSRWGTENVL 1074

Query: 746  NGRTGSPLQMKIFIGPTFYQRLIHMAEDKMKYRNHGPVHPLTRQPVHDRKRHGGVKFGEM 567
            NGRTG  +Q  IF+GPTFYQRLIHM+EDK+K+RN GPVHPLTRQPV DRKR GGVKFGEM
Sbjct: 1075 NGRTGERMQSLIFMGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGVKFGEM 1134

Query: 566  ERDCMLAHGATSNLLERLFYLSDFSTMHICSKCQMVAPVVLEN-----GVRGPHCNFCKT 402
            ERDC+LAHG+ +NL ERLF LSDFS MHIC  C+ VA VV+ +      +RGP+C FCK+
Sbjct: 1135 ERDCLLAHGSAANLHERLFMLSDFSQMHICQTCERVANVVMRSVSGGKKIRGPYCGFCKS 1194

Query: 401  AKHVVKVNVPYACKLLYQELFAMGICLKFETE 306
            ++++V++NVPY  KLLYQELF+MGICLKF+TE
Sbjct: 1195 SENIVRINVPYGAKLLYQELFSMGICLKFDTE 1226


>gb|EEE61785.1| hypothetical protein OsJ_16357 [Oryza sativa Japonica Group]
          Length = 1185

 Score =  422 bits (1086), Expect = e-115
 Identities = 200/332 (60%), Positives = 249/332 (75%), Gaps = 5/332 (1%)
 Frame = -1

Query: 1286 GKPSGSNLKIDKLDDDGLPFISSDLYSGDVLIGKVGPQPSDSNFSLKLKHTEKGRVDQVL 1107
            GK      ++D LDDDGLP++ + L SGD++IGKV     D   S+KLKHTEKG V +VL
Sbjct: 854  GKMQSKRGRVDNLDDDGLPYVGASLQSGDIVIGKVSESGEDH--SIKLKHTEKGMVQRVL 911

Query: 1106 MTTNDCGKKYAKVRLREMRVPSVGDKFSSMHGQKGVVGFIEEQENMPFTKQGIVPDLIIN 927
            ++ ND GK +A V LR++R P +GDKFSSMHGQKGVVGF+E QEN PFT QGIVPD++IN
Sbjct: 912  LSANDEGKNFAVVTLRQVRSPCLGDKFSSMHGQKGVVGFLESQENFPFTYQGIVPDIVIN 971

Query: 926  PHAFPSRQTPGQLFECXXXXXXXXXXXXXXATPFRPMTVEYLTERLHKCGYQQWGMEKMY 747
            PHAFP+RQTPGQL E               ATPF   + + +T++LHK G+ +WG E + 
Sbjct: 972  PHAFPTRQTPGQLLEAALGKGIALGGTMRYATPFTTASFDVITDQLHKAGFSRWGAESVL 1031

Query: 746  NGRTGSPLQMKIFIGPTFYQRLIHMAEDKMKYRNHGPVHPLTRQPVHDRKRHGGVKFGEM 567
            NGRTG  +   IF+GPTFYQRLIHMAEDK+K+RN GPVHPLTRQPV DRKR GGVKFGEM
Sbjct: 1032 NGRTGERMHSLIFMGPTFYQRLIHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGVKFGEM 1091

Query: 566  ERDCMLAHGATSNLLERLFYLSDFSTMHICSKCQMVAPVVLE-----NGVRGPHCNFCKT 402
            ERDC+LAHGA +NL ERLF LSDFS MH+C  C+ VA V++        +RGP+C FC++
Sbjct: 1092 ERDCLLAHGAAANLHERLFMLSDFSQMHVCQTCERVANVIMRPVPGGKKIRGPYCGFCRS 1151

Query: 401  AKHVVKVNVPYACKLLYQELFAMGICLKFETE 306
            ++++V++NVPY  KLLYQELF+MGICL+FETE
Sbjct: 1152 SENIVRINVPYGAKLLYQELFSMGICLRFETE 1183


>gb|EEC78111.1| hypothetical protein OsI_17620 [Oryza sativa Indica Group]
          Length = 1177

 Score =  422 bits (1086), Expect = e-115
 Identities = 200/332 (60%), Positives = 249/332 (75%), Gaps = 5/332 (1%)
 Frame = -1

Query: 1286 GKPSGSNLKIDKLDDDGLPFISSDLYSGDVLIGKVGPQPSDSNFSLKLKHTEKGRVDQVL 1107
            GK      ++D LDDDGLP++ + L SGD++IGKV     D   S+KLKHTEKG V +VL
Sbjct: 846  GKMQSKRGRVDNLDDDGLPYVGASLQSGDIVIGKVSESGEDH--SIKLKHTEKGMVQRVL 903

Query: 1106 MTTNDCGKKYAKVRLREMRVPSVGDKFSSMHGQKGVVGFIEEQENMPFTKQGIVPDLIIN 927
            ++ ND GK +A V LR++R P +GDKFSSMHGQKGVVGF+E QEN PFT QGIVPD++IN
Sbjct: 904  LSANDEGKNFAVVTLRQVRSPCLGDKFSSMHGQKGVVGFLESQENFPFTYQGIVPDIVIN 963

Query: 926  PHAFPSRQTPGQLFECXXXXXXXXXXXXXXATPFRPMTVEYLTERLHKCGYQQWGMEKMY 747
            PHAFP+RQTPGQL E               ATPF   + + +T++LHK G+ +WG E + 
Sbjct: 964  PHAFPTRQTPGQLLEAALGKGIALGGTMRYATPFTTASFDVITDQLHKAGFSRWGAESVL 1023

Query: 746  NGRTGSPLQMKIFIGPTFYQRLIHMAEDKMKYRNHGPVHPLTRQPVHDRKRHGGVKFGEM 567
            NGRTG  +   IF+GPTFYQRLIHMAEDK+K+RN GPVHPLTRQPV DRKR GGVKFGEM
Sbjct: 1024 NGRTGERMHSLIFMGPTFYQRLIHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGVKFGEM 1083

Query: 566  ERDCMLAHGATSNLLERLFYLSDFSTMHICSKCQMVAPVVLE-----NGVRGPHCNFCKT 402
            ERDC+LAHGA +NL ERLF LSDFS MH+C  C+ VA V++        +RGP+C FC++
Sbjct: 1084 ERDCLLAHGAAANLHERLFMLSDFSQMHVCQTCERVANVIMRPVPGGKKIRGPYCGFCRS 1143

Query: 401  AKHVVKVNVPYACKLLYQELFAMGICLKFETE 306
            ++++V++NVPY  KLLYQELF+MGICL+FETE
Sbjct: 1144 SENIVRINVPYGAKLLYQELFSMGICLRFETE 1175


>ref|NP_001054041.1| Os04g0641000 [Oryza sativa Japonica Group]
            gi|113565612|dbj|BAF15955.1| Os04g0641000, partial [Oryza
            sativa Japonica Group]
          Length = 1270

 Score =  422 bits (1086), Expect = e-115
 Identities = 200/332 (60%), Positives = 249/332 (75%), Gaps = 5/332 (1%)
 Frame = -1

Query: 1286 GKPSGSNLKIDKLDDDGLPFISSDLYSGDVLIGKVGPQPSDSNFSLKLKHTEKGRVDQVL 1107
            GK      ++D LDDDGLP++ + L SGD++IGKV     D   S+KLKHTEKG V +VL
Sbjct: 939  GKMQSKRGRVDNLDDDGLPYVGASLQSGDIVIGKVSESGEDH--SIKLKHTEKGMVQRVL 996

Query: 1106 MTTNDCGKKYAKVRLREMRVPSVGDKFSSMHGQKGVVGFIEEQENMPFTKQGIVPDLIIN 927
            ++ ND GK +A V LR++R P +GDKFSSMHGQKGVVGF+E QEN PFT QGIVPD++IN
Sbjct: 997  LSANDEGKNFAVVTLRQVRSPCLGDKFSSMHGQKGVVGFLESQENFPFTYQGIVPDIVIN 1056

Query: 926  PHAFPSRQTPGQLFECXXXXXXXXXXXXXXATPFRPMTVEYLTERLHKCGYQQWGMEKMY 747
            PHAFP+RQTPGQL E               ATPF   + + +T++LHK G+ +WG E + 
Sbjct: 1057 PHAFPTRQTPGQLLEAALGKGIALGGTMRYATPFTTASFDVITDQLHKAGFSRWGAESVL 1116

Query: 746  NGRTGSPLQMKIFIGPTFYQRLIHMAEDKMKYRNHGPVHPLTRQPVHDRKRHGGVKFGEM 567
            NGRTG  +   IF+GPTFYQRLIHMAEDK+K+RN GPVHPLTRQPV DRKR GGVKFGEM
Sbjct: 1117 NGRTGERMHSLIFMGPTFYQRLIHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGVKFGEM 1176

Query: 566  ERDCMLAHGATSNLLERLFYLSDFSTMHICSKCQMVAPVVLE-----NGVRGPHCNFCKT 402
            ERDC+LAHGA +NL ERLF LSDFS MH+C  C+ VA V++        +RGP+C FC++
Sbjct: 1177 ERDCLLAHGAAANLHERLFMLSDFSQMHVCQTCERVANVIMRPVPGGKKIRGPYCGFCRS 1236

Query: 401  AKHVVKVNVPYACKLLYQELFAMGICLKFETE 306
            ++++V++NVPY  KLLYQELF+MGICL+FETE
Sbjct: 1237 SENIVRINVPYGAKLLYQELFSMGICLRFETE 1268


>emb|CAJ86030.1| B0414F07.4 [Oryza sativa Indica Group]
          Length = 1343

 Score =  422 bits (1086), Expect = e-115
 Identities = 200/332 (60%), Positives = 249/332 (75%), Gaps = 5/332 (1%)
 Frame = -1

Query: 1286 GKPSGSNLKIDKLDDDGLPFISSDLYSGDVLIGKVGPQPSDSNFSLKLKHTEKGRVDQVL 1107
            GK      ++D LDDDGLP++ + L SGD++IGKV     D   S+KLKHTEKG V +VL
Sbjct: 1012 GKMQSKRGRVDNLDDDGLPYVGASLQSGDIVIGKVSESGEDH--SIKLKHTEKGMVQRVL 1069

Query: 1106 MTTNDCGKKYAKVRLREMRVPSVGDKFSSMHGQKGVVGFIEEQENMPFTKQGIVPDLIIN 927
            ++ ND GK +A V LR++R P +GDKFSSMHGQKGVVGF+E QEN PFT QGIVPD++IN
Sbjct: 1070 LSANDEGKNFAVVTLRQVRSPCLGDKFSSMHGQKGVVGFLESQENFPFTYQGIVPDIVIN 1129

Query: 926  PHAFPSRQTPGQLFECXXXXXXXXXXXXXXATPFRPMTVEYLTERLHKCGYQQWGMEKMY 747
            PHAFP+RQTPGQL E               ATPF   + + +T++LHK G+ +WG E + 
Sbjct: 1130 PHAFPTRQTPGQLLEAALGKGIALGGTMRYATPFTTASFDVITDQLHKAGFSRWGAESVL 1189

Query: 746  NGRTGSPLQMKIFIGPTFYQRLIHMAEDKMKYRNHGPVHPLTRQPVHDRKRHGGVKFGEM 567
            NGRTG  +   IF+GPTFYQRLIHMAEDK+K+RN GPVHPLTRQPV DRKR GGVKFGEM
Sbjct: 1190 NGRTGERMHSLIFMGPTFYQRLIHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGVKFGEM 1249

Query: 566  ERDCMLAHGATSNLLERLFYLSDFSTMHICSKCQMVAPVVLE-----NGVRGPHCNFCKT 402
            ERDC+LAHGA +NL ERLF LSDFS MH+C  C+ VA V++        +RGP+C FC++
Sbjct: 1250 ERDCLLAHGAAANLHERLFMLSDFSQMHVCQTCERVANVIMRPVPGGKKIRGPYCGFCRS 1309

Query: 401  AKHVVKVNVPYACKLLYQELFAMGICLKFETE 306
            ++++V++NVPY  KLLYQELF+MGICL+FETE
Sbjct: 1310 SENIVRINVPYGAKLLYQELFSMGICLRFETE 1341


>emb|CAE05960.2| OSJNBa0063C18.1 [Oryza sativa Japonica Group]
          Length = 1316

 Score =  422 bits (1086), Expect = e-115
 Identities = 200/332 (60%), Positives = 249/332 (75%), Gaps = 5/332 (1%)
 Frame = -1

Query: 1286 GKPSGSNLKIDKLDDDGLPFISSDLYSGDVLIGKVGPQPSDSNFSLKLKHTEKGRVDQVL 1107
            GK      ++D LDDDGLP++ + L SGD++IGKV     D   S+KLKHTEKG V +VL
Sbjct: 985  GKMQSKRGRVDNLDDDGLPYVGASLQSGDIVIGKVSESGEDH--SIKLKHTEKGMVQRVL 1042

Query: 1106 MTTNDCGKKYAKVRLREMRVPSVGDKFSSMHGQKGVVGFIEEQENMPFTKQGIVPDLIIN 927
            ++ ND GK +A V LR++R P +GDKFSSMHGQKGVVGF+E QEN PFT QGIVPD++IN
Sbjct: 1043 LSANDEGKNFAVVTLRQVRSPCLGDKFSSMHGQKGVVGFLESQENFPFTYQGIVPDIVIN 1102

Query: 926  PHAFPSRQTPGQLFECXXXXXXXXXXXXXXATPFRPMTVEYLTERLHKCGYQQWGMEKMY 747
            PHAFP+RQTPGQL E               ATPF   + + +T++LHK G+ +WG E + 
Sbjct: 1103 PHAFPTRQTPGQLLEAALGKGIALGGTMRYATPFTTASFDVITDQLHKAGFSRWGAESVL 1162

Query: 746  NGRTGSPLQMKIFIGPTFYQRLIHMAEDKMKYRNHGPVHPLTRQPVHDRKRHGGVKFGEM 567
            NGRTG  +   IF+GPTFYQRLIHMAEDK+K+RN GPVHPLTRQPV DRKR GGVKFGEM
Sbjct: 1163 NGRTGERMHSLIFMGPTFYQRLIHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGVKFGEM 1222

Query: 566  ERDCMLAHGATSNLLERLFYLSDFSTMHICSKCQMVAPVVLE-----NGVRGPHCNFCKT 402
            ERDC+LAHGA +NL ERLF LSDFS MH+C  C+ VA V++        +RGP+C FC++
Sbjct: 1223 ERDCLLAHGAAANLHERLFMLSDFSQMHVCQTCERVANVIMRPVPGGKKIRGPYCGFCRS 1282

Query: 401  AKHVVKVNVPYACKLLYQELFAMGICLKFETE 306
            ++++V++NVPY  KLLYQELF+MGICL+FETE
Sbjct: 1283 SENIVRINVPYGAKLLYQELFSMGICLRFETE 1314


>emb|CAD41847.2| OSJNBb0079B02.6 [Oryza sativa Japonica Group]
          Length = 1343

 Score =  422 bits (1086), Expect = e-115
 Identities = 200/332 (60%), Positives = 249/332 (75%), Gaps = 5/332 (1%)
 Frame = -1

Query: 1286 GKPSGSNLKIDKLDDDGLPFISSDLYSGDVLIGKVGPQPSDSNFSLKLKHTEKGRVDQVL 1107
            GK      ++D LDDDGLP++ + L SGD++IGKV     D   S+KLKHTEKG V +VL
Sbjct: 1012 GKMQSKRGRVDNLDDDGLPYVGASLQSGDIVIGKVSESGEDH--SIKLKHTEKGMVQRVL 1069

Query: 1106 MTTNDCGKKYAKVRLREMRVPSVGDKFSSMHGQKGVVGFIEEQENMPFTKQGIVPDLIIN 927
            ++ ND GK +A V LR++R P +GDKFSSMHGQKGVVGF+E QEN PFT QGIVPD++IN
Sbjct: 1070 LSANDEGKNFAVVTLRQVRSPCLGDKFSSMHGQKGVVGFLESQENFPFTYQGIVPDIVIN 1129

Query: 926  PHAFPSRQTPGQLFECXXXXXXXXXXXXXXATPFRPMTVEYLTERLHKCGYQQWGMEKMY 747
            PHAFP+RQTPGQL E               ATPF   + + +T++LHK G+ +WG E + 
Sbjct: 1130 PHAFPTRQTPGQLLEAALGKGIALGGTMRYATPFTTASFDVITDQLHKAGFSRWGAESVL 1189

Query: 746  NGRTGSPLQMKIFIGPTFYQRLIHMAEDKMKYRNHGPVHPLTRQPVHDRKRHGGVKFGEM 567
            NGRTG  +   IF+GPTFYQRLIHMAEDK+K+RN GPVHPLTRQPV DRKR GGVKFGEM
Sbjct: 1190 NGRTGERMHSLIFMGPTFYQRLIHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGVKFGEM 1249

Query: 566  ERDCMLAHGATSNLLERLFYLSDFSTMHICSKCQMVAPVVLE-----NGVRGPHCNFCKT 402
            ERDC+LAHGA +NL ERLF LSDFS MH+C  C+ VA V++        +RGP+C FC++
Sbjct: 1250 ERDCLLAHGAAANLHERLFMLSDFSQMHVCQTCERVANVIMRPVPGGKKIRGPYCGFCRS 1309

Query: 401  AKHVVKVNVPYACKLLYQELFAMGICLKFETE 306
            ++++V++NVPY  KLLYQELF+MGICL+FETE
Sbjct: 1310 SENIVRINVPYGAKLLYQELFSMGICLRFETE 1341


>gb|ADB19859.1| mutant required to maintain repression 7-2/ RNA polymerase D second
            largest subunit 2-2 [Zea mays]
          Length = 1229

 Score =  422 bits (1085), Expect = e-115
 Identities = 199/332 (59%), Positives = 250/332 (75%), Gaps = 5/332 (1%)
 Frame = -1

Query: 1286 GKPSGSNLKIDKLDDDGLPFISSDLYSGDVLIGKVGPQPSDSNFSLKLKHTEKGRVDQVL 1107
            GK      ++D LDDDGLP++ + L + D++IGKV     D   S+KLKHTEKG V +VL
Sbjct: 898  GKTESKRGRVDNLDDDGLPYVGASLQTNDIVIGKVSESGEDH--SIKLKHTEKGMVQKVL 955

Query: 1106 MTTNDCGKKYAKVRLREMRVPSVGDKFSSMHGQKGVVGFIEEQENMPFTKQGIVPDLIIN 927
            ++ ND GK +A V LR++R P +GDKFSSMHGQKGVVGF+E QEN PFT +GIVPD++IN
Sbjct: 956  LSANDEGKNFAVVTLRQVRTPCLGDKFSSMHGQKGVVGFLESQENFPFTHEGIVPDIVIN 1015

Query: 926  PHAFPSRQTPGQLFECXXXXXXXXXXXXXXATPFRPMTVEYLTERLHKCGYQQWGMEKMY 747
            PHAFP+RQTPGQL E               ATPF   +V+ + E+LH+ GY +WG E + 
Sbjct: 1016 PHAFPTRQTPGQLLEAALGKGIACKGTMRYATPFTTASVDVIAEQLHRAGYSRWGSENVL 1075

Query: 746  NGRTGSPLQMKIFIGPTFYQRLIHMAEDKMKYRNHGPVHPLTRQPVHDRKRHGGVKFGEM 567
            NGRTG  +Q  +F+GPTFYQRLIHM+EDK+K+RN GPVHPLTRQPV DRKR GGVKFGEM
Sbjct: 1076 NGRTGERVQSLVFMGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGVKFGEM 1135

Query: 566  ERDCMLAHGATSNLLERLFYLSDFSTMHICSKCQMVAPVVLEN-----GVRGPHCNFCKT 402
            ERDC+LAHG+ +NL ERLF LSDFS MHIC  C+ VA VV+ +      +RGP+C FCK+
Sbjct: 1136 ERDCLLAHGSAANLHERLFLLSDFSQMHICQTCERVANVVMRSVPGGKKIRGPYCGFCKS 1195

Query: 401  AKHVVKVNVPYACKLLYQELFAMGICLKFETE 306
            ++++V++NVPY  KLLYQELF+MGICLKFET+
Sbjct: 1196 SENIVRINVPYGAKLLYQELFSMGICLKFETQ 1227


>ref|NP_001177299.1| required to maintain repression7 [Zea mays]
            gi|283443696|gb|ADB19857.1| required to maintain
            repression 7/RNA polymerase D second largest subunit [Zea
            mays] gi|297185477|gb|ADI24118.1| RPD2/E2a [Zea mays]
            gi|414585188|tpg|DAA35759.1| TPA: putative DNA-directed
            RNA polymerase subunit family protein [Zea mays]
          Length = 1229

 Score =  422 bits (1085), Expect = e-115
 Identities = 199/332 (59%), Positives = 250/332 (75%), Gaps = 5/332 (1%)
 Frame = -1

Query: 1286 GKPSGSNLKIDKLDDDGLPFISSDLYSGDVLIGKVGPQPSDSNFSLKLKHTEKGRVDQVL 1107
            GK      ++D LDDDGLP++ + L + D++IGKV     D   S+KLKHTEKG V +VL
Sbjct: 898  GKTESKRGRVDNLDDDGLPYVGASLQTNDIVIGKVSESGEDH--SIKLKHTEKGMVQKVL 955

Query: 1106 MTTNDCGKKYAKVRLREMRVPSVGDKFSSMHGQKGVVGFIEEQENMPFTKQGIVPDLIIN 927
            ++ ND GK +A V LR++R P +GDKFSSMHGQKGVVGF+E QEN PFT +GIVPD++IN
Sbjct: 956  LSANDEGKNFAVVTLRQVRTPCLGDKFSSMHGQKGVVGFLESQENFPFTHEGIVPDIVIN 1015

Query: 926  PHAFPSRQTPGQLFECXXXXXXXXXXXXXXATPFRPMTVEYLTERLHKCGYQQWGMEKMY 747
            PHAFP+RQTPGQL E               ATPF   +V+ + E+LH+ GY +WG E + 
Sbjct: 1016 PHAFPTRQTPGQLLEAALGKGIACKGTMRYATPFTTASVDVIAEQLHRAGYSRWGSENVL 1075

Query: 746  NGRTGSPLQMKIFIGPTFYQRLIHMAEDKMKYRNHGPVHPLTRQPVHDRKRHGGVKFGEM 567
            NGRTG  +Q  +F+GPTFYQRLIHM+EDK+K+RN GPVHPLTRQPV DRKR GGVKFGEM
Sbjct: 1076 NGRTGERVQSLVFMGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGVKFGEM 1135

Query: 566  ERDCMLAHGATSNLLERLFYLSDFSTMHICSKCQMVAPVVLEN-----GVRGPHCNFCKT 402
            ERDC+LAHG+ +NL ERLF LSDFS MHIC  C+ VA VV+ +      +RGP+C FCK+
Sbjct: 1136 ERDCLLAHGSAANLHERLFLLSDFSQMHICQTCERVANVVMRSVPGGKKIRGPYCGFCKS 1195

Query: 401  AKHVVKVNVPYACKLLYQELFAMGICLKFETE 306
            ++++V++NVPY  KLLYQELF+MGICLKFET+
Sbjct: 1196 SENIVRINVPYGAKLLYQELFSMGICLKFETQ 1227


>gb|AAY45706.1| RNA polymerase IV second largest subunit [Zea mays]
          Length = 1170

 Score =  421 bits (1081), Expect = e-115
 Identities = 199/332 (59%), Positives = 249/332 (75%), Gaps = 5/332 (1%)
 Frame = -1

Query: 1286 GKPSGSNLKIDKLDDDGLPFISSDLYSGDVLIGKVGPQPSDSNFSLKLKHTEKGRVDQVL 1107
            GK      + D LDDDGLP++ + L + D++IGKV     D   S+KLKHTEKG V +VL
Sbjct: 839  GKTESKRGRXDNLDDDGLPYVGASLQTNDIVIGKVSESGEDH--SIKLKHTEKGMVQKVL 896

Query: 1106 MTTNDCGKKYAKVRLREMRVPSVGDKFSSMHGQKGVVGFIEEQENMPFTKQGIVPDLIIN 927
            ++ ND GK +A V LR++R P +GDKFSSMHGQKGVVGF+E QEN PFT +GIVPD++IN
Sbjct: 897  LSANDEGKNFAVVTLRQVRTPCLGDKFSSMHGQKGVVGFLESQENFPFTHEGIVPDIVIN 956

Query: 926  PHAFPSRQTPGQLFECXXXXXXXXXXXXXXATPFRPMTVEYLTERLHKCGYQQWGMEKMY 747
            PHAFP+RQTPGQL E               ATPF   +V+ + E+LH+ GY +WG E + 
Sbjct: 957  PHAFPTRQTPGQLLEAALGKGIACKGTMRYATPFTTASVDVIAEQLHRAGYSRWGSENVL 1016

Query: 746  NGRTGSPLQMKIFIGPTFYQRLIHMAEDKMKYRNHGPVHPLTRQPVHDRKRHGGVKFGEM 567
            NGRTG  +Q  +F+GPTFYQRLIHM+EDK+K+RN GPVHPLTRQPV DRKR GGVKFGEM
Sbjct: 1017 NGRTGERVQSLVFMGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGVKFGEM 1076

Query: 566  ERDCMLAHGATSNLLERLFYLSDFSTMHICSKCQMVAPVVLEN-----GVRGPHCNFCKT 402
            ERDC+LAHG+ +NL ERLF LSDFS MHIC  C+ VA VV+ +      +RGP+C FCK+
Sbjct: 1077 ERDCLLAHGSAANLHERLFLLSDFSQMHICQTCERVANVVMRSVPGGKKIRGPYCGFCKS 1136

Query: 401  AKHVVKVNVPYACKLLYQELFAMGICLKFETE 306
            ++++V++NVPY  KLLYQELF+MGICLKFET+
Sbjct: 1137 SENIVRINVPYGAKLLYQELFSMGICLKFETQ 1168


>ref|XP_006652896.1| PREDICTED: DNA-directed RNA polymerases IV and V subunit 2-like
            [Oryza brachyantha]
          Length = 1250

 Score =  419 bits (1076), Expect = e-114
 Identities = 198/332 (59%), Positives = 247/332 (74%), Gaps = 5/332 (1%)
 Frame = -1

Query: 1286 GKPSGSNLKIDKLDDDGLPFISSDLYSGDVLIGKVGPQPSDSNFSLKLKHTEKGRVDQVL 1107
            GK      ++D LDDDGLP++ + L SGD++IGKV     D   S+KLKHTEKG V +VL
Sbjct: 919  GKMQSKRGRVDNLDDDGLPYVGASLQSGDIVIGKVSESGEDH--SIKLKHTEKGMVQRVL 976

Query: 1106 MTTNDCGKKYAKVRLREMRVPSVGDKFSSMHGQKGVVGFIEEQENMPFTKQGIVPDLIIN 927
            ++ ND GK +A V LR++R P +GDKFSSMHGQKGV+GF+E QEN PFT QGIVPD++IN
Sbjct: 977  LSANDEGKNFAVVTLRQVRSPCLGDKFSSMHGQKGVIGFLESQENFPFTCQGIVPDIVIN 1036

Query: 926  PHAFPSRQTPGQLFECXXXXXXXXXXXXXXATPFRPMTVEYLTERLHKCGYQQWGMEKMY 747
            PHAFP+RQTPGQL E               ATPF   + + +T++LHK G+ +WG E + 
Sbjct: 1037 PHAFPTRQTPGQLLEAALGKGIALGGTMRYATPFTTASFDVITDQLHKAGFSRWGAESVL 1096

Query: 746  NGRTGSPLQMKIFIGPTFYQRLIHMAEDKMKYRNHGPVHPLTRQPVHDRKRHGGVKFGEM 567
            NGRTG  +   IF+GP FYQRLIHMAEDK+K+RN GPVHPLTRQPV DRKR GGVKFGEM
Sbjct: 1097 NGRTGERMHSLIFMGPNFYQRLIHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGVKFGEM 1156

Query: 566  ERDCMLAHGATSNLLERLFYLSDFSTMHICSKCQMVAPVVLE-----NGVRGPHCNFCKT 402
            ERDC+LAHGA +NL ERLF LSDFS MHIC  C+ VA V++        +RGP+C FC++
Sbjct: 1157 ERDCLLAHGAAANLHERLFMLSDFSQMHICQTCERVANVIMRPVPGGKKIRGPYCGFCRS 1216

Query: 401  AKHVVKVNVPYACKLLYQELFAMGICLKFETE 306
            ++++ ++NVPY  KLLYQELF+MGICL+FETE
Sbjct: 1217 SENIARINVPYGAKLLYQELFSMGICLRFETE 1248


>gb|EMS61833.1| DNA-directed RNA polymerase D subunit 2a [Triticum urartu]
          Length = 1269

 Score =  414 bits (1065), Expect = e-113
 Identities = 204/334 (61%), Positives = 245/334 (73%), Gaps = 5/334 (1%)
 Frame = -1

Query: 1286 GKPSGSNLKIDKLDDDGLPFISSDLYSGDVLIGKVGPQPSDSNFSLKLKHTEKGRVDQVL 1107
            GK      ++D LDDDGLPF+ S L  GD++IGKV     D   S+KLKHTEKG V +VL
Sbjct: 904  GKMESKRGRVDNLDDDGLPFVGSSLQIGDIIIGKVSESGEDH--SIKLKHTEKGMVQRVL 961

Query: 1106 MTTNDCGKKYAKVRLREMRVPSVGDKFSSMHGQKGVVGFIEEQENMPFTKQGIVPDLIIN 927
            ++ ND GK +A V LR++R P VGDKFSSMHGQKGVVGF+E QEN PFT QGIVPD++IN
Sbjct: 962  LSANDEGKHFAVVSLRQVRSPCVGDKFSSMHGQKGVVGFLESQENFPFTCQGIVPDIVIN 1021

Query: 926  PHAFPSRQTPGQLFECXXXXXXXXXXXXXXATPFRPMTVEYLTERLHKCGYQQWGMEKMY 747
            PHAFP+RQTPGQL E               ATPF   TVE ++E+LHK G+ + G E + 
Sbjct: 1022 PHAFPTRQTPGQLLEAALGKGIALGGKIKYATPFTTATVEVISEQLHKLGFSRGGAESVL 1081

Query: 746  NGRTGSPLQMKIFIGPTFYQRLIHMAEDKMKYRNHGPVHPLTRQPVHDRKRHGGVKFGEM 567
            NG+TG  +Q  IF GP FYQRLIHMAEDK+K+RN GPVHPLTRQPV DRKR GGVKFGEM
Sbjct: 1082 NGQTGKRMQQLIFAGPNFYQRLIHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGVKFGEM 1141

Query: 566  ERDCMLAHGATSNLLERLFYLSDFSTMHICSKCQMVAPVVLE-----NGVRGPHCNFCKT 402
            ERDC+LAHGA +NL ERLF LSDFS M IC  C+  A V++        +RGP+C FCK+
Sbjct: 1142 ERDCLLAHGAAANLHERLFTLSDFSEMRICQTCERGANVIMRPVSGGRKIRGPYCGFCKS 1201

Query: 401  AKHVVKVNVPYACKLLYQELFAMGICLKFETEQM 300
            ++++VK+ VPY  KLLYQELF+MGICLKF+TE M
Sbjct: 1202 SENIVKIAVPYGAKLLYQELFSMGICLKFQTECM 1235


>ref|XP_003564776.1| PREDICTED: DNA-directed RNA polymerase D subunit 2a-like
            [Brachypodium distachyon]
          Length = 1213

 Score =  413 bits (1062), Expect = e-113
 Identities = 199/332 (59%), Positives = 245/332 (73%), Gaps = 5/332 (1%)
 Frame = -1

Query: 1286 GKPSGSNLKIDKLDDDGLPFISSDLYSGDVLIGKVGPQPSDSNFSLKLKHTEKGRVDQVL 1107
            GK      ++D LDDDGLP++ + L SGD++IGKV     D   S+K+KHTEKG V +VL
Sbjct: 882  GKMQSKRGRVDNLDDDGLPYVGASLQSGDIVIGKVSESGEDH--SIKMKHTEKGMVQRVL 939

Query: 1106 MTTNDCGKKYAKVRLREMRVPSVGDKFSSMHGQKGVVGFIEEQENMPFTKQGIVPDLIIN 927
            ++ ND GK +A V LR++R P VGDKFSSMHGQKGV+GF+E QEN PFT QGIVPD++IN
Sbjct: 940  LSANDEGKNFAVVTLRQVRSPCVGDKFSSMHGQKGVIGFLESQENFPFTCQGIVPDVVIN 999

Query: 926  PHAFPSRQTPGQLFECXXXXXXXXXXXXXXATPFRPMTVEYLTERLHKCGYQQWGMEKMY 747
            PHAFP+RQTPGQL E               ATPF P ++E ++E+LHK G+ + G E + 
Sbjct: 1000 PHAFPTRQTPGQLLEAALGKGIALGGAMRYATPFTPASLEVISEQLHKAGFSRGGAESVI 1059

Query: 746  NGRTGSPLQMKIFIGPTFYQRLIHMAEDKMKYRNHGPVHPLTRQPVHDRKRHGGVKFGEM 567
            NGRTG  +   IF+GP FYQRL HMAEDK+K+RN GPVHPLTRQPV DRKR GGVKFGEM
Sbjct: 1060 NGRTGERMHSLIFMGPNFYQRLTHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGVKFGEM 1119

Query: 566  ERDCMLAHGATSNLLERLFYLSDFSTMHICSKCQMVAPVVLE-----NGVRGPHCNFCKT 402
            ERDC+LAHGA +NL ERLF LSDFS MHIC  C+ VA VV+        +RGP+C FC++
Sbjct: 1120 ERDCLLAHGAAANLHERLFMLSDFSQMHICRTCERVANVVMRGVPGGKRIRGPYCGFCRS 1179

Query: 401  AKHVVKVNVPYACKLLYQELFAMGICLKFETE 306
            +++ V++ VPY  KLLYQELF MGICLKF+TE
Sbjct: 1180 SENTVRIAVPYGAKLLYQELFCMGICLKFQTE 1211


>gb|AFW57180.1| putative DNA-directed RNA polymerase subunit family protein [Zea
            mays]
          Length = 1259

 Score =  412 bits (1058), Expect = e-112
 Identities = 202/334 (60%), Positives = 246/334 (73%), Gaps = 7/334 (2%)
 Frame = -1

Query: 1286 GKPSGSNLKIDKLDDDGLPFISSDLYSGDVLIGKVGPQPSDSNFSLKLKHTEKGRVDQVL 1107
            GK      K+D LD DGLP++ + L SGD++IGKV    S  + S KL HTEKG VD+V+
Sbjct: 926  GKVQSKRGKVDSLDSDGLPYVGASLQSGDIVIGKV--TESGEDHSAKLMHTEKGMVDKVV 983

Query: 1106 MTTNDCGKKYAKVRLREMRVPSVGDKFSSMHGQKGVVGFIEEQENMPFTKQGIVPDLIIN 927
            ++ ND G  +A V LR+ R P VGDKF+SMHGQKGVVG ++ QEN PFT QGIVPD++IN
Sbjct: 984  LSANDDGVNFATVTLRQSRSPCVGDKFASMHGQKGVVGLLDSQENFPFTSQGIVPDMVIN 1043

Query: 926  PHAFPSRQTPGQLFECXXXXXXXXXXXXXXATPFRPMTVEYLTERLHKCGYQQWGMEKMY 747
            PH FP+RQTPGQL E               ATPF   TVE + E+LHK G+ +WG E + 
Sbjct: 1044 PHGFPTRQTPGQLLEAALGKGIALGGKVRYATPFTTPTVEVIAEQLHKAGFCRWGEESVL 1103

Query: 746  NGRTGSPLQMKIFIGPTFYQRLIHMAEDKMKYRNHGPVHPLTRQPVHDRKRHGGVKFGEM 567
            NG+TG  ++  +F+GPTFYQRL+HMAEDK+K+RN GPVHPLTRQPV D+KR GGVKFGEM
Sbjct: 1104 NGQTGERMKSLVFMGPTFYQRLVHMAEDKVKFRNTGPVHPLTRQPVEDKKRFGGVKFGEM 1163

Query: 566  ERDCMLAHGATSNLLERLFYLSDFSTMHICSKCQMVAPVVL---ENG----VRGPHCNFC 408
            ERDCMLAHGA +NL ERLF LSDFS MHIC  C+ VA V++   E G    VRGP+C FC
Sbjct: 1164 ERDCMLAHGAAANLHERLFTLSDFSRMHICQACERVANVIVRAAEGGGGKKVRGPYCLFC 1223

Query: 407  KTAKHVVKVNVPYACKLLYQELFAMGICLKFETE 306
            ++A+ VV+V+VPY  KLLYQELF+MGICLKFETE
Sbjct: 1224 RSAERVVRVDVPYGSKLLYQELFSMGICLKFETE 1257


>ref|XP_003577435.1| PREDICTED: DNA-directed RNA polymerase D subunit 2a-like
            [Brachypodium distachyon]
          Length = 1213

 Score =  412 bits (1058), Expect = e-112
 Identities = 198/332 (59%), Positives = 245/332 (73%), Gaps = 5/332 (1%)
 Frame = -1

Query: 1286 GKPSGSNLKIDKLDDDGLPFISSDLYSGDVLIGKVGPQPSDSNFSLKLKHTEKGRVDQVL 1107
            GK      ++D LDDDGLP++ + L SGD++IGKV     D   S+K+KHTEKG   +VL
Sbjct: 882  GKMQSKRGRVDNLDDDGLPYVGASLQSGDIVIGKVSESGEDH--SIKMKHTEKGMAQRVL 939

Query: 1106 MTTNDCGKKYAKVRLREMRVPSVGDKFSSMHGQKGVVGFIEEQENMPFTKQGIVPDLIIN 927
            ++ ND GK +A V LR++R P VGDKFSSMHGQKGV+GF+E QEN PFT QGIVPD++IN
Sbjct: 940  LSANDEGKNFAVVTLRQVRSPCVGDKFSSMHGQKGVIGFLESQENFPFTCQGIVPDVVIN 999

Query: 926  PHAFPSRQTPGQLFECXXXXXXXXXXXXXXATPFRPMTVEYLTERLHKCGYQQWGMEKMY 747
            PHAFP+RQTPGQL E               ATPF P ++E ++E+LHK G+ + G E + 
Sbjct: 1000 PHAFPTRQTPGQLLEAALGKGIALGGAMRYATPFTPASLEVISEQLHKAGFSRSGAESVI 1059

Query: 746  NGRTGSPLQMKIFIGPTFYQRLIHMAEDKMKYRNHGPVHPLTRQPVHDRKRHGGVKFGEM 567
            NGRTG  +   IF+GP FYQRL HMAEDK+K+RN GPVHPLTRQPV DRKR GGVKFGEM
Sbjct: 1060 NGRTGERMHSLIFMGPNFYQRLTHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGVKFGEM 1119

Query: 566  ERDCMLAHGATSNLLERLFYLSDFSTMHICSKCQMVAPVVLEN-----GVRGPHCNFCKT 402
            ERDC+LAHGA +NL ERLF LSDFS MHIC  C+ VA VV+ +      +RGP+C FC++
Sbjct: 1120 ERDCLLAHGAAANLHERLFMLSDFSQMHICRTCERVANVVMRSVPGGKRIRGPYCGFCRS 1179

Query: 401  AKHVVKVNVPYACKLLYQELFAMGICLKFETE 306
            +++ V++ VPY  KLLYQELF MGICLKF+TE
Sbjct: 1180 SENTVRIAVPYGAKLLYQELFCMGICLKFQTE 1211


>ref|XP_002445131.1| hypothetical protein SORBIDRAFT_07g004600 [Sorghum bicolor]
            gi|241941481|gb|EES14626.1| hypothetical protein
            SORBIDRAFT_07g004600 [Sorghum bicolor]
          Length = 1251

 Score =  410 bits (1055), Expect = e-112
 Identities = 199/333 (59%), Positives = 244/333 (73%), Gaps = 6/333 (1%)
 Frame = -1

Query: 1286 GKPSGSNLKIDKLDDDGLPFISSDLYSGDVLIGKVGPQPSDSNFSLKLKHTEKGRVDQVL 1107
            GK      K+D LD +GLP++ + L SGD++IGKV     D   S KL HTEKG VD+V+
Sbjct: 919  GKVQSKRGKVDSLDSEGLPYVGASLQSGDIVIGKVSESGEDH--SAKLMHTEKGMVDKVV 976

Query: 1106 MTTNDCGKKYAKVRLREMRVPSVGDKFSSMHGQKGVVGFIEEQENMPFTKQGIVPDLIIN 927
            ++ ND G  +A V LR+ R P VGDKF+SMHGQKGVVG ++ QEN PFT QGIVPD++IN
Sbjct: 977  LSANDDGVNFATVTLRQSRSPCVGDKFASMHGQKGVVGLLDSQENFPFTCQGIVPDIVIN 1036

Query: 926  PHAFPSRQTPGQLFECXXXXXXXXXXXXXXATPFRPMTVEYLTERLHKCGYQQWGMEKMY 747
            PH FP+RQTPGQL E               ATPF   TV+ +TE+LHK G+ +WG E + 
Sbjct: 1037 PHGFPTRQTPGQLLEAALGKGIAMGGKVRYATPFTTPTVDVITEQLHKAGFSRWGEESVL 1096

Query: 746  NGRTGSPLQMKIFIGPTFYQRLIHMAEDKMKYRNHGPVHPLTRQPVHDRKRHGGVKFGEM 567
            NG+TG  ++  +F+GPTFYQRL+HMAEDK+K+RN GPVHP+TRQPV D+KR GGVKFGEM
Sbjct: 1097 NGQTGERMKSLVFMGPTFYQRLVHMAEDKVKFRNTGPVHPVTRQPVEDKKRFGGVKFGEM 1156

Query: 566  ERDCMLAHGATSNLLERLFYLSDFSTMHICSKCQMVAPVVL---ENG---VRGPHCNFCK 405
            ERDCMLAHGA +NL ERLF LSDFS MHIC  CQ VA V++   E G   V GP+C FC+
Sbjct: 1157 ERDCMLAHGAAANLHERLFTLSDFSQMHICQACQRVANVIMRPAEGGSKKVHGPYCMFCR 1216

Query: 404  TAKHVVKVNVPYACKLLYQELFAMGICLKFETE 306
            +A+ +V+VNVPY  KLLYQELF MGICLKF+TE
Sbjct: 1217 SAERIVRVNVPYGSKLLYQELFCMGICLKFDTE 1249


>ref|XP_003603295.1| DNA-directed RNA polymerase subunit beta [Medicago truncatula]
            gi|355492343|gb|AES73546.1| DNA-directed RNA polymerase
            subunit beta [Medicago truncatula]
          Length = 1237

 Score =  407 bits (1045), Expect = e-111
 Identities = 196/332 (59%), Positives = 250/332 (75%), Gaps = 5/332 (1%)
 Frame = -1

Query: 1286 GKPSGSNLKIDKLDDDGLPFISSDLYSGDVLIGKVGPQPSDSNFSLKLKHTEKGRVDQVL 1107
            GK      ++D LDDDG PF+ ++L SGD++IG+     +D   S+KLKHTE+G V +V+
Sbjct: 906  GKIQSKIGRVDSLDDDGFPFVGANLQSGDIIIGRCADSGTDH--SIKLKHTERGYVQKVV 963

Query: 1106 MTTNDCGKKYAKVRLREMRVPSVGDKFSSMHGQKGVVGFIEEQENMPFTKQGIVPDLIIN 927
            +++ND GK +A V LR++R P +GDKFSSMHGQKGV+GF+E QEN PFTKQGIVPD++IN
Sbjct: 964  LSSNDEGKNFAVVSLRQVRSPVLGDKFSSMHGQKGVLGFLESQENFPFTKQGIVPDIVIN 1023

Query: 926  PHAFPSRQTPGQLFECXXXXXXXXXXXXXXATPFRPMTVEYLTERLHKCGYQQWGMEKMY 747
            PHAFPSRQTPGQL E               ATPF   +VE +T++LH+ G+ +WG E++Y
Sbjct: 1024 PHAFPSRQTPGQLLEAALGKGIACVGSLRNATPFSTSSVEAITDQLHRAGFSRWGNERVY 1083

Query: 746  NGRTGSPLQMKIFIGPTFYQRLIHMAEDKMKYRNHGPVHPLTRQPVHDRKRHGGVKFGEM 567
            NGRTG  ++  IF+GPTFYQRL HM+EDK+K+RN GPVHPLTRQPV DRKR GG+KFGEM
Sbjct: 1084 NGRTGEMVRSLIFMGPTFYQRLHHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEM 1143

Query: 566  ERDCMLAHGATSNLLERLFYLSDFSTMHICSKCQMVAPVVLE-----NGVRGPHCNFCKT 402
            ERDC++AHGA++NL ERLF LSD S +HICSKC+ VA V+L        +RGP+C FC++
Sbjct: 1144 ERDCLIAHGASANLYERLFTLSDSSQIHICSKCKNVANVILRPVSGGRKIRGPYCRFCES 1203

Query: 401  AKHVVKVNVPYACKLLYQELFAMGICLKFETE 306
            A  +V  +VPY  KLL QELF+MGI LKFETE
Sbjct: 1204 ADDIVVASVPYGAKLLSQELFSMGINLKFETE 1235