BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ephedra25_contig00010147
         (2641 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002981487.1| hypothetical protein SELMODRAFT_233747 [Sela...   678   0.0  
gb|AAS55439.1| RNA polymerase I largest subunit [Ephedra viridis]     596   e-167
ref|XP_006850181.1| hypothetical protein AMTR_s00022p00245030 [A...   535   e-149
emb|CBI29879.3| unnamed protein product [Vitis vinifera]              505   e-140
ref|XP_002277555.1| PREDICTED: DNA-directed RNA polymerase I sub...   505   e-140
ref|XP_004967186.1| PREDICTED: DNA-directed RNA polymerase I sub...   483   e-133
ref|XP_002526734.1| DNA-directed RNA polymerase I largest subuni...   474   e-130
gb|EOY09358.1| Nuclear RNA polymerase A1 isoform 4 [Theobroma ca...   471   e-130
gb|EOY09357.1| Nuclear RNA polymerase A1 isoform 3 [Theobroma ca...   471   e-130
gb|EOY09356.1| Nuclear RNA polymerase A1, putative isoform 2 [Th...   471   e-130
gb|EOY09355.1| Nuclear RNA polymerase A1, putative isoform 1 [Th...   471   e-130
dbj|BAD35511.1| putative RNA polymerase A(I) large subunit [Oryz...   470   e-129
ref|XP_006656244.1| PREDICTED: DNA-directed RNA polymerase I sub...   465   e-128
gb|ESW17626.1| hypothetical protein PHAVU_007G255400g [Phaseolus...   461   e-127
ref|XP_006402858.1| hypothetical protein EUTSA_v10005738mg [Eutr...   460   e-126
ref|XP_003607990.1| DNA-directed RNA polymerase subunit beta [Me...   454   e-125
ref|XP_003559192.1| PREDICTED: DNA-directed RNA polymerase I sub...   454   e-124
gb|EMS52925.1| DNA-directed RNA polymerase I subunit rpa1 [Triti...   452   e-124
ref|XP_004513652.1| PREDICTED: DNA-directed RNA polymerase I sub...   450   e-123
ref|XP_004513648.1| PREDICTED: DNA-directed RNA polymerase I sub...   449   e-123

>ref|XP_002981487.1| hypothetical protein SELMODRAFT_233747 [Selaginella moellendorffii]
            gi|300150653|gb|EFJ17302.1| hypothetical protein
            SELMODRAFT_233747 [Selaginella moellendorffii]
          Length = 1578

 Score =  678 bits (1750), Expect = 0.0
 Identities = 393/815 (48%), Positives = 515/815 (63%), Gaps = 9/815 (1%)
 Frame = +1

Query: 58   GDKAHAQFLG---KDAXXXXXXXXXXXXXXXLRSKGESSSARLDRLMSGALNKITSEVNG 228
            GD  H +F+G   K                 L+ + ++  ARLD LMS A+NK+TSEVN 
Sbjct: 809  GDIVHGRFVGVEDKQLSSVGIEAIKDMTGRILQLRADAGRARLDMLMSSAMNKVTSEVNN 868

Query: 229  SVFPDGLRKPFLKNCLSLMTLTGAKGGMVNFTQISSLLGQQELEGKRVPRMISGKTLPCF 408
            ++FP GL KPF +NCLSLMT+TGAKGGMVNFTQISS+LGQQELEGKRVPRM+SGKTLPCF
Sbjct: 869  ALFPKGLVKPFPENCLSLMTVTGAKGGMVNFTQISSMLGQQELEGKRVPRMVSGKTLPCF 928

Query: 409  SPWDTQPRAGGFISDRFLTGLRPQEYYFHCMAGRDGLVDTAVKTSRSGYLQRCLIKNLEC 588
             P++   R+GGFI DRFLTGLRPQEYY+HCMAGRDGLVDTAVKT++SGYLQRC+IKNLEC
Sbjct: 929  QPYEPVARSGGFIKDRFLTGLRPQEYYYHCMAGRDGLVDTAVKTAKSGYLQRCIIKNLEC 988

Query: 589  LTVFYDHTVRDSDGSVIQFCYGEDGVDVTKSSCLTGFEILAANQKLLSQKL-CKEQFNDF 765
            L + YD TVRD+DGSVIQF YGED VDVTKSSCLT F+++A N+ L++QKL   E   D 
Sbjct: 989  LKINYDFTVRDADGSVIQFFYGEDAVDVTKSSCLTNFDLMATNRDLITQKLGLGEHAKDV 1048

Query: 766  TDRKLARKNSSAAVCDTTDIPEKLKEKAHKYIYKLSEKEKHLWKL---RKPKKFLDLLRV 936
             + K A  +  A +   TDIPE +++K  K++  LSE++K  +KL   R  K+   ++  
Sbjct: 1049 KNMK-AIVSKDAYI---TDIPEAMEQKFEKFMGGLSEEKKKAYKLYRRRHIKELRSVMTH 1104

Query: 937  KYISSLAEPGEAVGVVAGQSVGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMAASKN 1116
            KY +SLA PGE VGV+AGQS+GEPSTQMTLNTFHFAGRGEMNVTLGIPRL EIL  ASK 
Sbjct: 1105 KYFASLAAPGEPVGVLAGQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLHEILTVASKA 1164

Query: 1117 ILTPVMTCRVKDGKTREDAERLAGKFRRIRFADLIETMDVGVVPFAVKAGVMQNTYKLKI 1296
            I TP+MTC +K GKTR++ ++LAG   ++   D++ET++V  VPF V  GV    YK+++
Sbjct: 1165 IKTPIMTCPLKPGKTRDEGQKLAGVMTKVMLPDILETVEVSAVPFYVHHGVPSRLYKVRL 1224

Query: 1297 KLYSPENYPSHSGISLEKCKSIFEEVFSKEMXXXXXXXXXXXXXXXEGAVQVFSESQPID 1476
            ++Y  E    H  I     KS+F +   KE+               + ++Q+   S+  D
Sbjct: 1225 RVYPEE----HMAI-----KSVFAKGVRKEI-----EREIKALTSAKDSIQILGISE--D 1268

Query: 1477 ESGMLSDDEVQANSGQKKPDNXXXXXXXXXXXXXXXXXXXXXXXYKRKVQGTXXXXXXXX 1656
            E     + E++   G+KK                           KRK + T        
Sbjct: 1269 EPSPAGEGEIE--GGKKK---VVEAGEVAEEDDDDDDQEEGADAEKRKGRTT-------- 1315

Query: 1657 XXXXXKSMAEYFSTEANTXXXXXXXXXXXMQNTLAEEDSLVDEMSSRSMVTDLGXXXXXX 1836
                     +  + E ++            +N +A+ D+  DE     +V D        
Sbjct: 1316 ---------DEAAYETDSEQEDEQEMDLDAENDIADGDN--DEEKGGEVVDDEEEGHGKE 1364

Query: 1837 XXXXNDSTVSVTSGRTLTWEYSVMENSHILLAP-IAEKVANKVYVQSVTNIDKCAVIEIT 2013
                  S+V    GR+   ++   +NS  L  P I EKV   V V+ + NI+KC  IE+ 
Sbjct: 1365 KEGKKSSSVR-ARGRSYEMKFQANQNSPQLFLPNIVEKVLKTVTVRRMKNIEKCNTIELN 1423

Query: 2014 EKKDDPPIPALQTNGINFEAFWKL-DNELDINRLMTNDINKVLEVYGVEAACATIVLEVQ 2190
             K   P  PALQT+G+NF   W L D+ LD+N+L +NDI  +L  YGVEAA ATIV EVQ
Sbjct: 1424 GK---PENPALQTDGVNFWELWSLPDDVLDLNKLTSNDIAAMLNTYGVEAARATIVREVQ 1480

Query: 2191 NVFDSYGITVDRRHLSLIADFMTFNGGYRPLNRIGIDSSTSPFLRISFETATKFLVDSCL 2370
             VF SYGI+V+ RHLSLIADFMTF GGYRPLNR+GI S+ SPFL++SFETA++FL+D+ L
Sbjct: 1481 GVFGSYGISVNARHLSLIADFMTFQGGYRPLNRVGIVSNPSPFLKMSFETASQFLIDASL 1540

Query: 2371 QGETDYLASPSARIVLGQVAKMGTGCFDILQNLEV 2475
            + + D L +PS+RI++G+   +GTGCFD+LQ  ++
Sbjct: 1541 RRQVDELDTPSSRIIVGRTVGLGTGCFDLLQKTDM 1575


>gb|AAS55439.1| RNA polymerase I largest subunit [Ephedra viridis]
          Length = 534

 Score =  596 bits (1537), Expect = e-167
 Identities = 298/318 (93%), Positives = 301/318 (94%)
 Frame = +1

Query: 58   GDKAHAQFLGKDAXXXXXXXXXXXXXXXLRSKGESSSARLDRLMSGALNKITSEVNGSVF 237
            GDKAHAQFLGKDA               LRSKGESSSARLDRLMSGALNKITSEVNGSVF
Sbjct: 217  GDKAHAQFLGKDAKEIDLGKIEEEIEKILRSKGESSSARLDRLMSGALNKITSEVNGSVF 276

Query: 238  PDGLRKPFLKNCLSLMTLTGAKGGMVNFTQISSLLGQQELEGKRVPRMISGKTLPCFSPW 417
            PDGLRKPFLKNCLSLMTLTGAKGGMVNFTQISSLLGQQELEGKRVPRMISGKTLPCFSPW
Sbjct: 277  PDGLRKPFLKNCLSLMTLTGAKGGMVNFTQISSLLGQQELEGKRVPRMISGKTLPCFSPW 336

Query: 418  DTQPRAGGFISDRFLTGLRPQEYYFHCMAGRDGLVDTAVKTSRSGYLQRCLIKNLECLTV 597
            D QPRAGGFISDRFLTGLRPQEYYFHCMAGRDGLVDTAVKTSRSGYLQRCLIKNLECLTV
Sbjct: 337  DIQPRAGGFISDRFLTGLRPQEYYFHCMAGRDGLVDTAVKTSRSGYLQRCLIKNLECLTV 396

Query: 598  FYDHTVRDSDGSVIQFCYGEDGVDVTKSSCLTGFEILAANQKLLSQKLCKEQFNDFTDRK 777
            FYDHTVRDSDGSVIQFCYGEDGVDVTKSSCLTGFEILAANQKLLSQKLCKE+FNDFTDRK
Sbjct: 397  FYDHTVRDSDGSVIQFCYGEDGVDVTKSSCLTGFEILAANQKLLSQKLCKEKFNDFTDRK 456

Query: 778  LARKNSSAAVCDTTDIPEKLKEKAHKYIYKLSEKEKHLWKLRKPKKFLDLLRVKYISSLA 957
            LARK+SSA+VCD TDIPEKLKEKAHKYIYKLSEKEKHLWKLRKPKKFLDLLRVKYISSLA
Sbjct: 457  LARKSSSASVCDATDIPEKLKEKAHKYIYKLSEKEKHLWKLRKPKKFLDLLRVKYISSLA 516

Query: 958  EPGEAVGVVAGQSVGEPS 1011
            EPGEAVGVVAGQSVGEPS
Sbjct: 517  EPGEAVGVVAGQSVGEPS 534


>ref|XP_006850181.1| hypothetical protein AMTR_s00022p00245030 [Amborella trichopoda]
            gi|548853779|gb|ERN11762.1| hypothetical protein
            AMTR_s00022p00245030 [Amborella trichopoda]
          Length = 1600

 Score =  535 bits (1377), Expect = e-149
 Identities = 278/440 (63%), Positives = 331/440 (75%)
 Frame = +1

Query: 58   GDKAHAQFLGKDAXXXXXXXXXXXXXXXLRSKGESSSARLDRLMSGALNKITSEVNGSVF 237
            GD  H+ F+G                  +R KGES+ ARLDR+MS ALN++TSEVN S+F
Sbjct: 773  GDHVHSWFIGAKDAEMDPIRMQAAIEKLVRGKGESAIARLDRMMSSALNRLTSEVNNSLF 832

Query: 238  PDGLRKPFLKNCLSLMTLTGAKGGMVNFTQISSLLGQQELEGKRVPRMISGKTLPCFSPW 417
            P+GL K F  NCLSLMT +GAKGG+VNFTQISSLLGQQELEGKRVPRM+SGKTLPCF PW
Sbjct: 833  PEGLSKSFPSNCLSLMTSSGAKGGLVNFTQISSLLGQQELEGKRVPRMVSGKTLPCFLPW 892

Query: 418  DTQPRAGGFISDRFLTGLRPQEYYFHCMAGRDGLVDTAVKTSRSGYLQRCLIKNLECLTV 597
            D+  RAGGFISDRFL GLRPQEYYFHCMAGR+GLVDTA+KT+RSGYLQR L+KNLECL V
Sbjct: 893  DSAARAGGFISDRFLNGLRPQEYYFHCMAGREGLVDTAIKTARSGYLQRRLMKNLECLRV 952

Query: 598  FYDHTVRDSDGSVIQFCYGEDGVDVTKSSCLTGFEILAANQKLLSQKLCKEQFNDFTDRK 777
             YDHTVRDSDGS+I+F YGEDGVDV K+S LT F+ LAAN+K LS +L   Q  D     
Sbjct: 953  NYDHTVRDSDGSIIEFIYGEDGVDVVKTSWLTEFKFLAANKKTLSARLGVHQLED----A 1008

Query: 778  LARKNSSAAVCDTTDIPEKLKEKAHKYIYKLSEKEKHLWKLRKPKKFLDLLRVKYISSLA 957
            L  +  S       D+P+ L+EK +K+I KLS+K++    LRK K F +LL++KY SSLA
Sbjct: 1009 LPSEYDSY----IKDLPDALEEKMNKFIEKLSKKKRDSLHLRKLKHFRNLLKLKYFSSLA 1064

Query: 958  EPGEAVGVVAGQSVGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMAASKNILTPVMT 1137
            +PGEAVGV+A QS+GEPSTQMTLNTFHFAG+GEMNVTLGIPRL+EIL  A+K+I TPVMT
Sbjct: 1065 QPGEAVGVIAAQSIGEPSTQMTLNTFHFAGQGEMNVTLGIPRLQEIL-GAAKDIRTPVMT 1123

Query: 1138 CRVKDGKTREDAERLAGKFRRIRFADLIETMDVGVVPFAVKAGVMQNTYKLKIKLYSPEN 1317
            C +   +TR+DAERLA K  RI+FAD+IE+M V VVPF+VK G     YKL++ LY PE 
Sbjct: 1124 CPLLKQRTRDDAERLAAKLSRIKFADVIESMQVHVVPFSVKNGEACTVYKLRVSLYPPEL 1183

Query: 1318 YPSHSGISLEKCKSIFEEVF 1377
            +P HS I+   C   F   F
Sbjct: 1184 FPEHSDITRADCVKAFRSQF 1203



 Score =  200 bits (508), Expect = 3e-48
 Identities = 108/208 (51%), Positives = 144/208 (69%), Gaps = 4/208 (1%)
 Frame = +1

Query: 1864 SVTSGRTLTWEYSVMENSHILLAPIAEKVANKVYVQSVTNIDKCAVIE---ITEKKDDPP 2034
            ++ +G  L   +   +    LL+  AEKVAN  YV+SV  ID+C+V++   + + K +PP
Sbjct: 1394 TLDTGEDLEAPFIFPKGCPYLLSQAAEKVANDTYVRSVLGIDQCSVVDYQPVEDYKGEPP 1453

Query: 2035 IP-ALQTNGINFEAFWKLDNELDINRLMTNDINKVLEVYGVEAACATIVLEVQNVFDSYG 2211
               A+QT G NF   W  + ++DI  L++NDI+ +L+ YGVEAA ATI  E+++VF SYG
Sbjct: 1454 SSVAIQTAGTNFLLMWTRE-DVDIKHLVSNDIHAMLKTYGVEAARATIKREIRSVFGSYG 1512

Query: 2212 ITVDRRHLSLIADFMTFNGGYRPLNRIGIDSSTSPFLRISFETATKFLVDSCLQGETDYL 2391
            I V+ RHL LI+DFMT  GG RP  R GID +TSPFL+I++ETAT+F+VDS + G  D L
Sbjct: 1513 IAVNSRHLDLISDFMTAGGGLRPFTRKGIDYNTSPFLKITYETATRFVVDSAIHGLEDAL 1572

Query: 2392 ASPSARIVLGQVAKMGTGCFDILQNLEV 2475
             SPSARIVLGQV KMGTGC  +LQNL V
Sbjct: 1573 ESPSARIVLGQVPKMGTGCISVLQNLVV 1600


>emb|CBI29879.3| unnamed protein product [Vitis vinifera]
          Length = 1669

 Score =  505 bits (1300), Expect = e-140
 Identities = 252/445 (56%), Positives = 326/445 (73%), Gaps = 1/445 (0%)
 Frame = +1

Query: 58   GDKAHAQFLGKDAXXXXXXXXXXXXXXXLRSKGESSSARLDRLMSGALNKITSEVNGSVF 237
            G+  H +F+G +                + S GE++  RLDR+M   LN++TS+VN  + 
Sbjct: 860  GELVHCKFIGSNHGKIDPVKLQVEVEKIILSNGEAAITRLDRMMKNELNELTSKVNKDLL 919

Query: 238  PDGLRKPFLKNCLSLMTLTGAKGGMVNFTQISSLLGQQELEGKRVPRMISGKTLPCFSPW 417
              GL KPF KNCLSLMT TGAKG  VNF+QISS LGQQ+LEGKRVPRM+SGKTLPCF PW
Sbjct: 920  LKGLVKPFPKNCLSLMTTTGAKGSTVNFSQISSFLGQQDLEGKRVPRMVSGKTLPCFPPW 979

Query: 418  DTQPRAGGFISDRFLTGLRPQEYYFHCMAGRDGLVDTAVKTSRSGYLQRCLIKNLECLTV 597
            D   RAGGFISDRFLTGL PQEYYFHCMAGR+GLVDTAVKTSRSGYLQRCLIKNLECL V
Sbjct: 980  DCAARAGGFISDRFLTGLHPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKV 1039

Query: 598  FYDHTVRDSDGSVIQFCYGEDGVDVTKSSCLTGFEILAANQKLLSQKLCKE-QFNDFTDR 774
             YD+TVRDSDGS++QF YG+DGVDV ++S +T FE LA N++++ +K  ++ +FN +  +
Sbjct: 1040 CYDYTVRDSDGSIVQFNYGDDGVDVHQTSFITEFEALAVNEEVVCEKFGQDGKFNGYIQK 1099

Query: 775  KLARKNSSAAVCDTTDIPEKLKEKAHKYIYKLSEKEKHLWKLRKPKKFLDLLRVKYISSL 954
                            +P++L++K  K+I    E+ +    ++K K F++L++ KYISSL
Sbjct: 1100 ----------------LPKELRKKTKKFIEGFMEERQDFDNMKKQKDFVNLVKQKYISSL 1143

Query: 955  AEPGEAVGVVAGQSVGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMAASKNILTPVM 1134
            A+PGE VGV+A QSVGEPSTQMTLNTFH AGRGE+NVTLGIPRL+EILM A+ +I TP+M
Sbjct: 1144 AQPGEPVGVLAAQSVGEPSTQMTLNTFHLAGRGEVNVTLGIPRLQEILMTAANDIKTPIM 1203

Query: 1135 TCRVKDGKTREDAERLAGKFRRIRFADLIETMDVGVVPFAVKAGVMQNTYKLKIKLYSPE 1314
            TC ++ G++++DAERLA K +++  AD+ E+M+V +VPF V+     + YKLK+KLY P 
Sbjct: 1204 TCPLQMGRSKDDAERLAAKLKKVTVADITESMEVSIVPFTVQDHQTCSIYKLKMKLYEPA 1263

Query: 1315 NYPSHSGISLEKCKSIFEEVFSKEM 1389
             YP H+GISLE C+   E VF +E+
Sbjct: 1264 LYPPHTGISLEDCEETLEAVFVREL 1288



 Score =  201 bits (510), Expect = 2e-48
 Identities = 105/204 (51%), Positives = 144/204 (70%), Gaps = 18/204 (8%)
 Frame = +1

Query: 1918 HILLAPIAEKVANKVYVQSVTNIDKCAVIEITE-----------KKDDPP------IPAL 2046
            HILLA IA+K ANKVY++S   ID C VI+  +           K+++ P      +PAL
Sbjct: 1466 HILLAQIAQKAANKVYIRSSGKIDLCQVIDCNKDQVIYYGRDPKKRENIPGEEKKKLPAL 1525

Query: 2047 QTNGINFEAFWKLDNELDINRLMTNDINKVLEVYGVEAACATIVLEVQNVFDSYGITVDR 2226
            QT G++F AFWK+ +ELD+  + +N+++ +L  +GVEAA ATI+ EV NVF++YG+ V+ 
Sbjct: 1526 QTAGVDFTAFWKMQDELDVRYVYSNNVHAMLNTFGVEAARATIIKEVFNVFNAYGVKVNI 1585

Query: 2227 RHLSLIADFMTFNGGYRPLNRI-GIDSSTSPFLRISFETATKFLVDSCLQGETDYLASPS 2403
            RHLSLIADFMT +GGYRP+NR  GI  S SPF +++FETA+KF+V++   G TD L S S
Sbjct: 1586 RHLSLIADFMTHSGGYRPMNRHGGIAESVSPFSKMTFETASKFIVEAASHGMTDNLESAS 1645

Query: 2404 ARIVLGQVAKMGTGCFDILQNLEV 2475
            ARI LG   KMGTGCFD++Q +E+
Sbjct: 1646 ARICLGLPVKMGTGCFDLMQKIEI 1669


>ref|XP_002277555.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA1-like [Vitis
            vinifera]
          Length = 1740

 Score =  505 bits (1300), Expect = e-140
 Identities = 252/445 (56%), Positives = 326/445 (73%), Gaps = 1/445 (0%)
 Frame = +1

Query: 58   GDKAHAQFLGKDAXXXXXXXXXXXXXXXLRSKGESSSARLDRLMSGALNKITSEVNGSVF 237
            G+  H +F+G +                + S GE++  RLDR+M   LN++TS+VN  + 
Sbjct: 931  GELVHCKFIGSNHGKIDPVKLQVEVEKIILSNGEAAITRLDRMMKNELNELTSKVNKDLL 990

Query: 238  PDGLRKPFLKNCLSLMTLTGAKGGMVNFTQISSLLGQQELEGKRVPRMISGKTLPCFSPW 417
              GL KPF KNCLSLMT TGAKG  VNF+QISS LGQQ+LEGKRVPRM+SGKTLPCF PW
Sbjct: 991  LKGLVKPFPKNCLSLMTTTGAKGSTVNFSQISSFLGQQDLEGKRVPRMVSGKTLPCFPPW 1050

Query: 418  DTQPRAGGFISDRFLTGLRPQEYYFHCMAGRDGLVDTAVKTSRSGYLQRCLIKNLECLTV 597
            D   RAGGFISDRFLTGL PQEYYFHCMAGR+GLVDTAVKTSRSGYLQRCLIKNLECL V
Sbjct: 1051 DCAARAGGFISDRFLTGLHPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKV 1110

Query: 598  FYDHTVRDSDGSVIQFCYGEDGVDVTKSSCLTGFEILAANQKLLSQKLCKE-QFNDFTDR 774
             YD+TVRDSDGS++QF YG+DGVDV ++S +T FE LA N++++ +K  ++ +FN +  +
Sbjct: 1111 CYDYTVRDSDGSIVQFNYGDDGVDVHQTSFITEFEALAVNEEVVCEKFGQDGKFNGYIQK 1170

Query: 775  KLARKNSSAAVCDTTDIPEKLKEKAHKYIYKLSEKEKHLWKLRKPKKFLDLLRVKYISSL 954
                            +P++L++K  K+I    E+ +    ++K K F++L++ KYISSL
Sbjct: 1171 ----------------LPKELRKKTKKFIEGFMEERQDFDNMKKQKDFVNLVKQKYISSL 1214

Query: 955  AEPGEAVGVVAGQSVGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMAASKNILTPVM 1134
            A+PGE VGV+A QSVGEPSTQMTLNTFH AGRGE+NVTLGIPRL+EILM A+ +I TP+M
Sbjct: 1215 AQPGEPVGVLAAQSVGEPSTQMTLNTFHLAGRGEVNVTLGIPRLQEILMTAANDIKTPIM 1274

Query: 1135 TCRVKDGKTREDAERLAGKFRRIRFADLIETMDVGVVPFAVKAGVMQNTYKLKIKLYSPE 1314
            TC ++ G++++DAERLA K +++  AD+ E+M+V +VPF V+     + YKLK+KLY P 
Sbjct: 1275 TCPLQMGRSKDDAERLAAKLKKVTVADITESMEVSIVPFTVQDHQTCSIYKLKMKLYEPA 1334

Query: 1315 NYPSHSGISLEKCKSIFEEVFSKEM 1389
             YP H+GISLE C+   E VF +E+
Sbjct: 1335 LYPPHTGISLEDCEETLEAVFVREL 1359



 Score =  201 bits (510), Expect = 2e-48
 Identities = 105/204 (51%), Positives = 144/204 (70%), Gaps = 18/204 (8%)
 Frame = +1

Query: 1918 HILLAPIAEKVANKVYVQSVTNIDKCAVIEITE-----------KKDDPP------IPAL 2046
            HILLA IA+K ANKVY++S   ID C VI+  +           K+++ P      +PAL
Sbjct: 1537 HILLAQIAQKAANKVYIRSSGKIDLCQVIDCNKDQVIYYGRDPKKRENIPGEEKKKLPAL 1596

Query: 2047 QTNGINFEAFWKLDNELDINRLMTNDINKVLEVYGVEAACATIVLEVQNVFDSYGITVDR 2226
            QT G++F AFWK+ +ELD+  + +N+++ +L  +GVEAA ATI+ EV NVF++YG+ V+ 
Sbjct: 1597 QTAGVDFTAFWKMQDELDVRYVYSNNVHAMLNTFGVEAARATIIKEVFNVFNAYGVKVNI 1656

Query: 2227 RHLSLIADFMTFNGGYRPLNRI-GIDSSTSPFLRISFETATKFLVDSCLQGETDYLASPS 2403
            RHLSLIADFMT +GGYRP+NR  GI  S SPF +++FETA+KF+V++   G TD L S S
Sbjct: 1657 RHLSLIADFMTHSGGYRPMNRHGGIAESVSPFSKMTFETASKFIVEAASHGMTDNLESAS 1716

Query: 2404 ARIVLGQVAKMGTGCFDILQNLEV 2475
            ARI LG   KMGTGCFD++Q +E+
Sbjct: 1717 ARICLGLPVKMGTGCFDLMQKIEI 1740


>ref|XP_004967186.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa1-like [Setaria
            italica]
          Length = 1682

 Score =  483 bits (1243), Expect = e-133
 Identities = 259/450 (57%), Positives = 319/450 (70%), Gaps = 7/450 (1%)
 Frame = +1

Query: 61   DKAHAQFL--GKDAXXXXXXXXXXXXXXXLRSKGESSSARLDRLMSGALNKITSEVNGSV 234
            +KAH  F+  GKD                +R  GES++  +DR +S AL+ ITS+VN +V
Sbjct: 856  EKAHGTFIKTGKDGEELQMEVEKV-----IRRDGESATVNMDREISNALSNITSDVNKNV 910

Query: 235  FPDGLRKPFLKNCLSLMTLTGAKGGMVNFTQISSLLGQQELEGKRVPRMISGKTLPCFSP 414
            FP GL+KPF  NCL+LMT TGAKGG VN  QISSLLGQQELEGKRVPRM+SGKTLPCF P
Sbjct: 911  FPYGLQKPFPGNCLTLMTATGAKGGDVNMYQISSLLGQQELEGKRVPRMVSGKTLPCFLP 970

Query: 415  WDTQPRAGGFISDRFLTGLRPQEYYFHCMAGRDGLVDTAVKTSRSGYLQRCLIKNLECLT 594
            WDT  RAGGFISDRFLTGLRPQEYYFHCMAGR+GL DTAVKTSRSGYLQRCLIK LE L 
Sbjct: 971  WDTSSRAGGFISDRFLTGLRPQEYYFHCMAGREGLCDTAVKTSRSGYLQRCLIKCLESLK 1030

Query: 595  VFYDHTVRDSDGSVIQFCYGEDGVDVTKSSCLTGFEILAANQKLLSQKLCKEQFNDFTDR 774
            V YDHTVRD DGS++QFCYGEDGVDV K+S L  F+ LA N+K++  K+   + N     
Sbjct: 1031 VSYDHTVRDVDGSIVQFCYGEDGVDVLKTSFLNKFKELADNKKVVLDKIKGHKQNQL--- 1087

Query: 775  KLARKNSSAAVCDTTDIPEKLKEKAHKYIYKLSEK-----EKHLWKLRKPKKFLDLLRVK 939
             L++ N        T +P+KL  +A +++  L EK     +K L    K K  + LL+VK
Sbjct: 1088 -LSKPNGY-----ITTLPKKLVAEAKEFLKLLKEKKSSDIKKGLMCDIKKKGLMKLLKVK 1141

Query: 940  YISSLAEPGEAVGVVAGQSVGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMAASKNI 1119
            Y+ SL +PGEAVGVVA QS+GEPSTQMTLNTFH AGRGEMNVTLGIPRL+EILM AS NI
Sbjct: 1142 YLYSLVDPGEAVGVVAAQSIGEPSTQMTLNTFHLAGRGEMNVTLGIPRLKEILMTASANI 1201

Query: 1120 LTPVMTCRVKDGKTREDAERLAGKFRRIRFADLIETMDVGVVPFAVKAGVMQNTYKLKIK 1299
             TP+M C + +  TR+DA R+A K RR+R AD++E ++V  VPF    G +   YKL++K
Sbjct: 1202 STPIMVCPLLEKWTRDDARRVAAKLRRVRVADIVEKIEVCTVPFYNTNGHVSTLYKLQMK 1261

Query: 1300 LYSPENYPSHSGISLEKCKSIFEEVFSKEM 1389
            LY  ++YP  S +++++C++    VF   M
Sbjct: 1262 LYPQKHYPPQSDLTVDECQTTLRTVFVDAM 1291



 Score =  212 bits (539), Expect = 8e-52
 Identities = 107/192 (55%), Positives = 141/192 (73%), Gaps = 1/192 (0%)
 Frame = +1

Query: 1897 YSVMENSHILLAPIAEKVANKVYVQSVTNIDKCAVIEITEKKDDPPIPALQTNGINFEAF 2076
            Y+  +  HILLA IA+K A  ++V++  NIDKC   E+ EKK+      L+T+G+NFE F
Sbjct: 1486 YAFCDEPHILLAQIAQKTARSIFVRACKNIDKC---EVEEKKEKGSSAVLKTSGVNFEVF 1542

Query: 2077 WKLDNELDINRLMTNDINKVLEVYGVEAACATIVLEVQNVFDSYGITVDRRHLSLIADFM 2256
            W L   + IN++ TNDI+ +L+ YGVEAA ATI+ EV +VF  YGI VD RHLS+IADFM
Sbjct: 1543 WNLRKYISINKITTNDIHAMLKTYGVEAARATIIEEVNHVFGVYGIKVDPRHLSMIADFM 1602

Query: 2257 TFNGGYRPLNRIGIDS-STSPFLRISFETATKFLVDSCLQGETDYLASPSARIVLGQVAK 2433
            TF+GGYRP+NR+G+   STSPF +++FETATKF+VD+   GE+D L  PSA I LG+ AK
Sbjct: 1603 TFDGGYRPMNRLGMGQFSTSPFGKMTFETATKFIVDAATHGESDSLECPSASICLGKPAK 1662

Query: 2434 MGTGCFDILQNL 2469
            +GTG F +LQNL
Sbjct: 1663 VGTGTFGLLQNL 1674


>ref|XP_002526734.1| DNA-directed RNA polymerase I largest subunit, putative [Ricinus
            communis] gi|223533923|gb|EEF35648.1| DNA-directed RNA
            polymerase I largest subunit, putative [Ricinus communis]
          Length = 1686

 Score =  474 bits (1219), Expect = e-130
 Identities = 245/417 (58%), Positives = 311/417 (74%), Gaps = 1/417 (0%)
 Frame = +1

Query: 142  LRSKGESSSARLDRLMSGALN-KITSEVNGSVFPDGLRKPFLKNCLSLMTLTGAKGGMVN 318
            +RS G+S+ A LDR MS  LN K +S V  ++  DGL KP  KNC+SLMT +GAKG  VN
Sbjct: 887  IRSDGDSALAYLDRQMSNELNTKTSSGVISNLLSDGLLKPSGKNCISLMTTSGAKGSKVN 946

Query: 319  FTQISSLLGQQELEGKRVPRMISGKTLPCFSPWDTQPRAGGFISDRFLTGLRPQEYYFHC 498
            F QISS LGQQELEGKRVPRM+SGKTLPCF PWD   R+GG+I+DRFLTGLRPQEYYFHC
Sbjct: 947  FQQISSFLGQQELEGKRVPRMVSGKTLPCFHPWDWAARSGGYITDRFLTGLRPQEYYFHC 1006

Query: 499  MAGRDGLVDTAVKTSRSGYLQRCLIKNLECLTVFYDHTVRDSDGSVIQFCYGEDGVDVTK 678
            MAGR+GLVDTAVKTSRSGYLQRCLIKNLECL + YDHTVRD+DGSV+QF YGEDGVDV +
Sbjct: 1007 MAGREGLVDTAVKTSRSGYLQRCLIKNLECLKIGYDHTVRDADGSVVQFYYGEDGVDVHQ 1066

Query: 679  SSCLTGFEILAANQKLLSQKLCKEQFNDFTDRKLARKNSSAAVCDTTDIPEKLKEKAHKY 858
            +S +  F+ LA NQ ++ ++         +  +L   NS       +++PE LKEKA ++
Sbjct: 1067 TSFIAKFKELALNQDMIYKR---------SGGQLGAFNSY-----ISELPEALKEKADRF 1112

Query: 859  IYKLSEKEKHLWKLRKPKKFLDLLRVKYISSLAEPGEAVGVVAGQSVGEPSTQMTLNTFH 1038
            +   S   +    L K +   +L++ K++ SLA+PGE VGV+A QSVGEPSTQMTLNTFH
Sbjct: 1113 LDDFSIMGRIASNLVKREDLYNLMKQKFLLSLAQPGEPVGVLAAQSVGEPSTQMTLNTFH 1172

Query: 1039 FAGRGEMNVTLGIPRLREILMAASKNILTPVMTCRVKDGKTREDAERLAGKFRRIRFADL 1218
             AGRGEMNVTLGIPRL+EILM AS +I TP+MTC +++G+T EDA+ LA K R++  AD+
Sbjct: 1173 LAGRGEMNVTLGIPRLQEILMTASIDIKTPIMTCPLQEGRTNEDADHLADKLRKVTVADI 1232

Query: 1219 IETMDVGVVPFAVKAGVMQNTYKLKIKLYSPENYPSHSGISLEKCKSIFEEVFSKEM 1389
            +E+M+V VVPFA++ G +   YKLK+KLY P +YP ++ IS+E  +   E VF +E+
Sbjct: 1233 VESMEVSVVPFAIQDGGVCRIYKLKMKLYRPAHYPQYANISVEDWEETLEVVFLREL 1289



 Score =  194 bits (493), Expect = 2e-46
 Identities = 101/204 (49%), Positives = 136/204 (66%), Gaps = 18/204 (8%)
 Frame = +1

Query: 1918 HILLAPIAEKVANKVYVQSVTNIDKCAVIEITEKK-----DDPP------------IPAL 2046
            HILLA IA+K A KVY+Q+   I++C V +  E +      DP             +PAL
Sbjct: 1483 HILLAEIAQKTAKKVYIQNPGKIEQCRVTDCKESQVIYYGKDPKERVDLKPDVKEKVPAL 1542

Query: 2047 QTNGINFEAFWKLDNELDINRLMTNDINKVLEVYGVEAACATIVLEVQNVFDSYGITVDR 2226
               G++F  FWK+ + LD+  + +N+I+ +L+ YGVEAA  TI+ E+ +VF SYGI V  
Sbjct: 1543 HATGVDFNTFWKMQDHLDVRYIYSNNIHAMLKTYGVEAARETIIREINHVFKSYGIAVSN 1602

Query: 2227 RHLSLIADFMTFNGGYRPLNRI-GIDSSTSPFLRISFETATKFLVDSCLQGETDYLASPS 2403
            RHLSLIADFMT  GGYRP++R+ GI  S SPF ++SFETA+KF+V++ L GE D L +PS
Sbjct: 1603 RHLSLIADFMTHTGGYRPMSRMGGIAESISPFSKMSFETASKFIVEAALHGEIDNLETPS 1662

Query: 2404 ARIVLGQVAKMGTGCFDILQNLEV 2475
            ARI LG   KMGTG FD++Q LE+
Sbjct: 1663 ARICLGLPVKMGTGSFDLMQKLEI 1686


>gb|EOY09358.1| Nuclear RNA polymerase A1 isoform 4 [Theobroma cacao]
          Length = 1397

 Score =  471 bits (1213), Expect = e-130
 Identities = 245/417 (58%), Positives = 311/417 (74%), Gaps = 1/417 (0%)
 Frame = +1

Query: 142  LRSKGESSSARLDRLMSGALNKITSE-VNGSVFPDGLRKPFLKNCLSLMTLTGAKGGMVN 318
            +R  GE++   LDR M   LN+ +S+ V   +  +GL K   +NC+SLMT +GAKG  VN
Sbjct: 608  IRRDGETALTALDRKMISVLNENSSKGVLTELLSEGLVKSMGENCISLMTTSGAKGSKVN 667

Query: 319  FTQISSLLGQQELEGKRVPRMISGKTLPCFSPWDTQPRAGGFISDRFLTGLRPQEYYFHC 498
            F QISS LGQQELEGKRVPRM+SGKTLPCF PWD   RAGGFISDRFL+GLRPQEYYFHC
Sbjct: 668  FQQISSFLGQQELEGKRVPRMVSGKTLPCFHPWDWAARAGGFISDRFLSGLRPQEYYFHC 727

Query: 499  MAGRDGLVDTAVKTSRSGYLQRCLIKNLECLTVFYDHTVRDSDGSVIQFCYGEDGVDVTK 678
            MAGR+GLVDTAVKTSRSGYLQRCLIKNLECL + YDHTVRD+DGS++QF YGEDG+DV +
Sbjct: 728  MAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDHTVRDADGSIVQFIYGEDGIDVHQ 787

Query: 679  SSCLTGFEILAANQKLLSQKLCKEQFNDFTDRKLARKNSSAAVCDTTDIPEKLKEKAHKY 858
            +S +  FE LA NQ ++S+KLC +         L   + S  +     +P+ L+ KA ++
Sbjct: 788  TSFIAKFEALALNQDMMSEKLCSQ---------LGEPDDSDKI-----LPDGLRSKAEQF 833

Query: 859  IYKLSEKEKHLWKLRKPKKFLDLLRVKYISSLAEPGEAVGVVAGQSVGEPSTQMTLNTFH 1038
            I +  +K +H  +  KPK FL+LL++K++SSLA+PGE VGV+A QSVGEPSTQMTLNTFH
Sbjct: 834  IREEIKKYQH--QKIKPKDFLNLLKLKFLSSLAQPGEPVGVLAAQSVGEPSTQMTLNTFH 891

Query: 1039 FAGRGEMNVTLGIPRLREILMAASKNILTPVMTCRVKDGKTREDAERLAGKFRRIRFADL 1218
             AGRGEMNVTLGIPRL+EILM AS +I TPVMTC +  GKT+EDA  LA K ++I  AD+
Sbjct: 892  LAGRGEMNVTLGIPRLQEILMTASIDIRTPVMTCPLHKGKTKEDALCLANKMKKITVADI 951

Query: 1219 IETMDVGVVPFAVKAGVMQNTYKLKIKLYSPENYPSHSGISLEKCKSIFEEVFSKEM 1389
            +E+M+V V PFAV  G + + YKLK+ L  P+ Y  +S I+++ C+ I + VF +E+
Sbjct: 952  LESMEVSVAPFAVDNGDICSIYKLKMMLGKPDKYFENSDITVKDCEHILKVVFLREL 1008



 Score =  190 bits (483), Expect = 2e-45
 Identities = 99/209 (47%), Positives = 137/209 (65%), Gaps = 16/209 (7%)
 Frame = +1

Query: 1897 YSVMENSHILLAPIAEKVANKVYVQSVTNIDKCAVIEITEKK---------------DDP 2031
            + +    HILLA IAEK A KVY+QS   ID+C V + +E +               D  
Sbjct: 1189 FKLKNEPHILLAQIAEKTAKKVYIQSFGKIDQCRVTDCSENQVFYYGEDPKKRKSPSDKE 1248

Query: 2032 PIPALQTNGINFEAFWKLDNELDINRLMTNDINKVLEVYGVEAACATIVLEVQNVFDSYG 2211
             I AL T G++F AFWK+++ +D+  L +N I+ +L  YGVEAA  TI+ E+ +VF SYG
Sbjct: 1249 KIQALHTTGVDFGAFWKMEDHIDVRYLYSNSIHAMLNTYGVEAARETIIREISHVFTSYG 1308

Query: 2212 ITVDRRHLSLIADFMTFNGGYRPLNRI-GIDSSTSPFLRISFETATKFLVDSCLQGETDY 2388
            I V+ RHL+LIADFMT +G YRP++R+ GI  S SPF ++SFETA+KF+V++   G  D 
Sbjct: 1309 IAVNIRHLTLIADFMTHSGRYRPMSRLGGIAESISPFSKMSFETASKFIVEAAKHGLVDN 1368

Query: 2389 LASPSARIVLGQVAKMGTGCFDILQNLEV 2475
            L +PS+RI LG   KMGTG FD++Q +E+
Sbjct: 1369 LETPSSRICLGLPVKMGTGSFDLMQKVEI 1397


>gb|EOY09357.1| Nuclear RNA polymerase A1 isoform 3 [Theobroma cacao]
          Length = 1400

 Score =  471 bits (1213), Expect = e-130
 Identities = 245/417 (58%), Positives = 311/417 (74%), Gaps = 1/417 (0%)
 Frame = +1

Query: 142  LRSKGESSSARLDRLMSGALNKITSE-VNGSVFPDGLRKPFLKNCLSLMTLTGAKGGMVN 318
            +R  GE++   LDR M   LN+ +S+ V   +  +GL K   +NC+SLMT +GAKG  VN
Sbjct: 611  IRRDGETALTALDRKMISVLNENSSKGVLTELLSEGLVKSMGENCISLMTTSGAKGSKVN 670

Query: 319  FTQISSLLGQQELEGKRVPRMISGKTLPCFSPWDTQPRAGGFISDRFLTGLRPQEYYFHC 498
            F QISS LGQQELEGKRVPRM+SGKTLPCF PWD   RAGGFISDRFL+GLRPQEYYFHC
Sbjct: 671  FQQISSFLGQQELEGKRVPRMVSGKTLPCFHPWDWAARAGGFISDRFLSGLRPQEYYFHC 730

Query: 499  MAGRDGLVDTAVKTSRSGYLQRCLIKNLECLTVFYDHTVRDSDGSVIQFCYGEDGVDVTK 678
            MAGR+GLVDTAVKTSRSGYLQRCLIKNLECL + YDHTVRD+DGS++QF YGEDG+DV +
Sbjct: 731  MAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDHTVRDADGSIVQFIYGEDGIDVHQ 790

Query: 679  SSCLTGFEILAANQKLLSQKLCKEQFNDFTDRKLARKNSSAAVCDTTDIPEKLKEKAHKY 858
            +S +  FE LA NQ ++S+KLC +         L   + S  +     +P+ L+ KA ++
Sbjct: 791  TSFIAKFEALALNQDMMSEKLCSQ---------LGEPDDSDKI-----LPDGLRSKAEQF 836

Query: 859  IYKLSEKEKHLWKLRKPKKFLDLLRVKYISSLAEPGEAVGVVAGQSVGEPSTQMTLNTFH 1038
            I +  +K +H  +  KPK FL+LL++K++SSLA+PGE VGV+A QSVGEPSTQMTLNTFH
Sbjct: 837  IREEIKKYQH--QKIKPKDFLNLLKLKFLSSLAQPGEPVGVLAAQSVGEPSTQMTLNTFH 894

Query: 1039 FAGRGEMNVTLGIPRLREILMAASKNILTPVMTCRVKDGKTREDAERLAGKFRRIRFADL 1218
             AGRGEMNVTLGIPRL+EILM AS +I TPVMTC +  GKT+EDA  LA K ++I  AD+
Sbjct: 895  LAGRGEMNVTLGIPRLQEILMTASIDIRTPVMTCPLHKGKTKEDALCLANKMKKITVADI 954

Query: 1219 IETMDVGVVPFAVKAGVMQNTYKLKIKLYSPENYPSHSGISLEKCKSIFEEVFSKEM 1389
            +E+M+V V PFAV  G + + YKLK+ L  P+ Y  +S I+++ C+ I + VF +E+
Sbjct: 955  LESMEVSVAPFAVDNGDICSIYKLKMMLGKPDKYFENSDITVKDCEHILKVVFLREL 1011



 Score =  190 bits (483), Expect = 2e-45
 Identities = 99/209 (47%), Positives = 137/209 (65%), Gaps = 16/209 (7%)
 Frame = +1

Query: 1897 YSVMENSHILLAPIAEKVANKVYVQSVTNIDKCAVIEITEKK---------------DDP 2031
            + +    HILLA IAEK A KVY+QS   ID+C V + +E +               D  
Sbjct: 1192 FKLKNEPHILLAQIAEKTAKKVYIQSFGKIDQCRVTDCSENQVFYYGEDPKKRKSPSDKE 1251

Query: 2032 PIPALQTNGINFEAFWKLDNELDINRLMTNDINKVLEVYGVEAACATIVLEVQNVFDSYG 2211
             I AL T G++F AFWK+++ +D+  L +N I+ +L  YGVEAA  TI+ E+ +VF SYG
Sbjct: 1252 KIQALHTTGVDFGAFWKMEDHIDVRYLYSNSIHAMLNTYGVEAARETIIREISHVFTSYG 1311

Query: 2212 ITVDRRHLSLIADFMTFNGGYRPLNRI-GIDSSTSPFLRISFETATKFLVDSCLQGETDY 2388
            I V+ RHL+LIADFMT +G YRP++R+ GI  S SPF ++SFETA+KF+V++   G  D 
Sbjct: 1312 IAVNIRHLTLIADFMTHSGRYRPMSRLGGIAESISPFSKMSFETASKFIVEAAKHGLVDN 1371

Query: 2389 LASPSARIVLGQVAKMGTGCFDILQNLEV 2475
            L +PS+RI LG   KMGTG FD++Q +E+
Sbjct: 1372 LETPSSRICLGLPVKMGTGSFDLMQKVEI 1400


>gb|EOY09356.1| Nuclear RNA polymerase A1, putative isoform 2 [Theobroma cacao]
          Length = 1689

 Score =  471 bits (1213), Expect = e-130
 Identities = 245/417 (58%), Positives = 311/417 (74%), Gaps = 1/417 (0%)
 Frame = +1

Query: 142  LRSKGESSSARLDRLMSGALNKITSE-VNGSVFPDGLRKPFLKNCLSLMTLTGAKGGMVN 318
            +R  GE++   LDR M   LN+ +S+ V   +  +GL K   +NC+SLMT +GAKG  VN
Sbjct: 900  IRRDGETALTALDRKMISVLNENSSKGVLTELLSEGLVKSMGENCISLMTTSGAKGSKVN 959

Query: 319  FTQISSLLGQQELEGKRVPRMISGKTLPCFSPWDTQPRAGGFISDRFLTGLRPQEYYFHC 498
            F QISS LGQQELEGKRVPRM+SGKTLPCF PWD   RAGGFISDRFL+GLRPQEYYFHC
Sbjct: 960  FQQISSFLGQQELEGKRVPRMVSGKTLPCFHPWDWAARAGGFISDRFLSGLRPQEYYFHC 1019

Query: 499  MAGRDGLVDTAVKTSRSGYLQRCLIKNLECLTVFYDHTVRDSDGSVIQFCYGEDGVDVTK 678
            MAGR+GLVDTAVKTSRSGYLQRCLIKNLECL + YDHTVRD+DGS++QF YGEDG+DV +
Sbjct: 1020 MAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDHTVRDADGSIVQFIYGEDGIDVHQ 1079

Query: 679  SSCLTGFEILAANQKLLSQKLCKEQFNDFTDRKLARKNSSAAVCDTTDIPEKLKEKAHKY 858
            +S +  FE LA NQ ++S+KLC +         L   + S  +     +P+ L+ KA ++
Sbjct: 1080 TSFIAKFEALALNQDMMSEKLCSQ---------LGEPDDSDKI-----LPDGLRSKAEQF 1125

Query: 859  IYKLSEKEKHLWKLRKPKKFLDLLRVKYISSLAEPGEAVGVVAGQSVGEPSTQMTLNTFH 1038
            I +  +K +H  +  KPK FL+LL++K++SSLA+PGE VGV+A QSVGEPSTQMTLNTFH
Sbjct: 1126 IREEIKKYQH--QKIKPKDFLNLLKLKFLSSLAQPGEPVGVLAAQSVGEPSTQMTLNTFH 1183

Query: 1039 FAGRGEMNVTLGIPRLREILMAASKNILTPVMTCRVKDGKTREDAERLAGKFRRIRFADL 1218
             AGRGEMNVTLGIPRL+EILM AS +I TPVMTC +  GKT+EDA  LA K ++I  AD+
Sbjct: 1184 LAGRGEMNVTLGIPRLQEILMTASIDIRTPVMTCPLHKGKTKEDALCLANKMKKITVADI 1243

Query: 1219 IETMDVGVVPFAVKAGVMQNTYKLKIKLYSPENYPSHSGISLEKCKSIFEEVFSKEM 1389
            +E+M+V V PFAV  G + + YKLK+ L  P+ Y  +S I+++ C+ I + VF +E+
Sbjct: 1244 LESMEVSVAPFAVDNGDICSIYKLKMMLGKPDKYFENSDITVKDCEHILKVVFLREL 1300



 Score =  190 bits (483), Expect = 2e-45
 Identities = 99/209 (47%), Positives = 137/209 (65%), Gaps = 16/209 (7%)
 Frame = +1

Query: 1897 YSVMENSHILLAPIAEKVANKVYVQSVTNIDKCAVIEITEKK---------------DDP 2031
            + +    HILLA IAEK A KVY+QS   ID+C V + +E +               D  
Sbjct: 1481 FKLKNEPHILLAQIAEKTAKKVYIQSFGKIDQCRVTDCSENQVFYYGEDPKKRKSPSDKE 1540

Query: 2032 PIPALQTNGINFEAFWKLDNELDINRLMTNDINKVLEVYGVEAACATIVLEVQNVFDSYG 2211
             I AL T G++F AFWK+++ +D+  L +N I+ +L  YGVEAA  TI+ E+ +VF SYG
Sbjct: 1541 KIQALHTTGVDFGAFWKMEDHIDVRYLYSNSIHAMLNTYGVEAARETIIREISHVFTSYG 1600

Query: 2212 ITVDRRHLSLIADFMTFNGGYRPLNRI-GIDSSTSPFLRISFETATKFLVDSCLQGETDY 2388
            I V+ RHL+LIADFMT +G YRP++R+ GI  S SPF ++SFETA+KF+V++   G  D 
Sbjct: 1601 IAVNIRHLTLIADFMTHSGRYRPMSRLGGIAESISPFSKMSFETASKFIVEAAKHGLVDN 1660

Query: 2389 LASPSARIVLGQVAKMGTGCFDILQNLEV 2475
            L +PS+RI LG   KMGTG FD++Q +E+
Sbjct: 1661 LETPSSRICLGLPVKMGTGSFDLMQKVEI 1689


>gb|EOY09355.1| Nuclear RNA polymerase A1, putative isoform 1 [Theobroma cacao]
          Length = 1665

 Score =  471 bits (1213), Expect = e-130
 Identities = 245/417 (58%), Positives = 311/417 (74%), Gaps = 1/417 (0%)
 Frame = +1

Query: 142  LRSKGESSSARLDRLMSGALNKITSE-VNGSVFPDGLRKPFLKNCLSLMTLTGAKGGMVN 318
            +R  GE++   LDR M   LN+ +S+ V   +  +GL K   +NC+SLMT +GAKG  VN
Sbjct: 903  IRRDGETALTALDRKMISVLNENSSKGVLTELLSEGLVKSMGENCISLMTTSGAKGSKVN 962

Query: 319  FTQISSLLGQQELEGKRVPRMISGKTLPCFSPWDTQPRAGGFISDRFLTGLRPQEYYFHC 498
            F QISS LGQQELEGKRVPRM+SGKTLPCF PWD   RAGGFISDRFL+GLRPQEYYFHC
Sbjct: 963  FQQISSFLGQQELEGKRVPRMVSGKTLPCFHPWDWAARAGGFISDRFLSGLRPQEYYFHC 1022

Query: 499  MAGRDGLVDTAVKTSRSGYLQRCLIKNLECLTVFYDHTVRDSDGSVIQFCYGEDGVDVTK 678
            MAGR+GLVDTAVKTSRSGYLQRCLIKNLECL + YDHTVRD+DGS++QF YGEDG+DV +
Sbjct: 1023 MAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDHTVRDADGSIVQFIYGEDGIDVHQ 1082

Query: 679  SSCLTGFEILAANQKLLSQKLCKEQFNDFTDRKLARKNSSAAVCDTTDIPEKLKEKAHKY 858
            +S +  FE LA NQ ++S+KLC +         L   + S  +     +P+ L+ KA ++
Sbjct: 1083 TSFIAKFEALALNQDMMSEKLCSQ---------LGEPDDSDKI-----LPDGLRSKAEQF 1128

Query: 859  IYKLSEKEKHLWKLRKPKKFLDLLRVKYISSLAEPGEAVGVVAGQSVGEPSTQMTLNTFH 1038
            I +  +K +H  +  KPK FL+LL++K++SSLA+PGE VGV+A QSVGEPSTQMTLNTFH
Sbjct: 1129 IREEIKKYQH--QKIKPKDFLNLLKLKFLSSLAQPGEPVGVLAAQSVGEPSTQMTLNTFH 1186

Query: 1039 FAGRGEMNVTLGIPRLREILMAASKNILTPVMTCRVKDGKTREDAERLAGKFRRIRFADL 1218
             AGRGEMNVTLGIPRL+EILM AS +I TPVMTC +  GKT+EDA  LA K ++I  AD+
Sbjct: 1187 LAGRGEMNVTLGIPRLQEILMTASIDIRTPVMTCPLHKGKTKEDALCLANKMKKITVADI 1246

Query: 1219 IETMDVGVVPFAVKAGVMQNTYKLKIKLYSPENYPSHSGISLEKCKSIFEEVFSKEM 1389
            +E+M+V V PFAV  G + + YKLK+ L  P+ Y  +S I+++ C+ I + VF +E+
Sbjct: 1247 LESMEVSVAPFAVDNGDICSIYKLKMMLGKPDKYFENSDITVKDCEHILKVVFLREL 1303



 Score =  190 bits (483), Expect = 2e-45
 Identities = 99/209 (47%), Positives = 137/209 (65%), Gaps = 16/209 (7%)
 Frame = +1

Query: 1897 YSVMENSHILLAPIAEKVANKVYVQSVTNIDKCAVIEITEKK---------------DDP 2031
            + +    HILLA IAEK A KVY+QS   ID+C V + +E +               D  
Sbjct: 1457 FKLKNEPHILLAQIAEKTAKKVYIQSFGKIDQCRVTDCSENQVFYYGEDPKKRKSPSDKE 1516

Query: 2032 PIPALQTNGINFEAFWKLDNELDINRLMTNDINKVLEVYGVEAACATIVLEVQNVFDSYG 2211
             I AL T G++F AFWK+++ +D+  L +N I+ +L  YGVEAA  TI+ E+ +VF SYG
Sbjct: 1517 KIQALHTTGVDFGAFWKMEDHIDVRYLYSNSIHAMLNTYGVEAARETIIREISHVFTSYG 1576

Query: 2212 ITVDRRHLSLIADFMTFNGGYRPLNRI-GIDSSTSPFLRISFETATKFLVDSCLQGETDY 2388
            I V+ RHL+LIADFMT +G YRP++R+ GI  S SPF ++SFETA+KF+V++   G  D 
Sbjct: 1577 IAVNIRHLTLIADFMTHSGRYRPMSRLGGIAESISPFSKMSFETASKFIVEAAKHGLVDN 1636

Query: 2389 LASPSARIVLGQVAKMGTGCFDILQNLEV 2475
            L +PS+RI LG   KMGTG FD++Q +E+
Sbjct: 1637 LETPSSRICLGLPVKMGTGSFDLMQKVEI 1665


>dbj|BAD35511.1| putative RNA polymerase A(I) large subunit [Oryza sativa Japonica
            Group]
          Length = 1748

 Score =  470 bits (1210), Expect = e-129
 Identities = 260/444 (58%), Positives = 307/444 (69%), Gaps = 28/444 (6%)
 Frame = +1

Query: 142  LRSKGESSSARLDRLMSGALNKITSEVNGSVFPDGLRKPFLKNCLSLMTLTGAKGGMVNF 321
            +R  GES++  LDR MS  LN +TS+VN  VFP GLRKPF  NCLSLMT TGAKGG+VN 
Sbjct: 939  IRRNGESATVILDRNMSSELNTLTSKVNKKVFPYGLRKPFPGNCLSLMTQTGAKGGLVNM 998

Query: 322  TQISSLLGQQELEGKRVPRMISGKTLPCFSPWDTQPRAGGFISDRFLTGLRPQEYYFHCM 501
            TQISSLLGQQELEGKRVPRMISGKTLPCF PWDT  RAGGFI DRFLTGLRPQEYYFHCM
Sbjct: 999  TQISSLLGQQELEGKRVPRMISGKTLPCFPPWDTSSRAGGFIGDRFLTGLRPQEYYFHCM 1058

Query: 502  AGRDGLVDTAVKTSRSGYLQRCLIKNLECLTVFYDHTVRDSDGSVIQFCYGEDGVDVTKS 681
            AGR+GLVDTAVKTSRSGYLQRCLIK+LE L V YDHTVRD DGS+IQFCYGEDGVDV K+
Sbjct: 1059 AGREGLVDTAVKTSRSGYLQRCLIKSLESLKVSYDHTVRDVDGSIIQFCYGEDGVDVLKT 1118

Query: 682  SCLTG-FEILAANQKLLSQKLCKEQFNDFTDRKLARKNSSAAVCDTTDIPEKLKEKAHKY 858
            S L   F  L+ N++ L  KL  +  ND    K    N +  +   +++PEKL E A ++
Sbjct: 1119 SFLDDKFRELSDNRRALLGKL--DSHND----KHLLLNPNGYI---SELPEKLIENAMEF 1169

Query: 859  IYKLSEKEKHLWKLRKPKKFLDLLRVKYISSLAEPGEAVGVVAGQSVGEPSTQMTLNTFH 1038
            + K    EK  + + K K+ + LL+VKYISSL +PGEAVGVVA QS+GEPSTQMTLNTFH
Sbjct: 1170 L-KSKRNEKGRYDI-KEKELMKLLKVKYISSLVDPGEAVGVVAAQSIGEPSTQMTLNTFH 1227

Query: 1039 FAGRGEMNVTLGIPRLREILMAASKNILTPVMTCRVKDGK-------------------- 1158
             AGRGEMNVTLGIPRL+E+LM AS  I TP M C + + K                    
Sbjct: 1228 LAGRGEMNVTLGIPRLKELLMTASAKISTPFMKCPLLEDKTWDDDEEEMDDKLKKARDAE 1287

Query: 1159 -------TREDAERLAGKFRRIRFADLIETMDVGVVPFAVKAGVMQNTYKLKIKLYSPEN 1317
                   T +DAER+A K RR+R AD++E ++V  VPF    G +   YKL++KLY    
Sbjct: 1288 RLAAKLRTIDDAERIAAKLRRVRVADIVERIEVCTVPFHNNNGCVSTLYKLQLKLYPQGL 1347

Query: 1318 YPSHSGISLEKCKSIFEEVFSKEM 1389
            YP  S +++E+C      VF   M
Sbjct: 1348 YPRQSELTVEECHETLRTVFIDAM 1371



 Score =  197 bits (500), Expect = 3e-47
 Identities = 105/206 (50%), Positives = 144/206 (69%), Gaps = 4/206 (1%)
 Frame = +1

Query: 1870 TSGRTLTWEYSVMENSHILLAPIAEKVANKVYVQSVTNIDKCAVIE---ITEKKDDPPIP 2040
            ++G      Y++ E  HILLA IA++ A  V+V++  NID+C V +   I     + PI 
Sbjct: 1538 STGLNFEVHYALQEQPHILLAQIAQRTARSVFVKACKNIDRCEVNKPKKIDNNTINTPI- 1596

Query: 2041 ALQTNGINFEAFWKLDNELDINRLMTNDINKVLEVYGVEAACATIVLEVQNVFDSYGITV 2220
             LQT G+NFE F KL + LDIN + +NDI+ +L  YGVEAA ATI+ EV+ VF +YGI V
Sbjct: 1597 TLQTAGVNFEVFHKLVDYLDINEVRSNDIHAMLNTYGVEAARATIIGEVKGVFGAYGIHV 1656

Query: 2221 DRRHLSLIADFMTFNGGYRPLNRIGIDS-STSPFLRISFETATKFLVDSCLQGETDYLAS 2397
            D RHL+LIADFMTF+GGYRP++R+G+   STSPF +++FETATKF+V++   GE+D L  
Sbjct: 1657 DMRHLNLIADFMTFDGGYRPMSRLGMGQFSTSPFGKMTFETATKFIVEAASHGESDTLDG 1716

Query: 2398 PSARIVLGQVAKMGTGCFDILQNLEV 2475
            PSA + LG+  K+GTG F +LQN  +
Sbjct: 1717 PSASVCLGKPVKVGTGSFGLLQNFSL 1742


>ref|XP_006656244.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa1-like [Oryza
            brachyantha]
          Length = 1755

 Score =  465 bits (1197), Expect = e-128
 Identities = 255/442 (57%), Positives = 306/442 (69%), Gaps = 26/442 (5%)
 Frame = +1

Query: 142  LRSKGESSSARLDRLMSGALNKITSEVNGSVFPDGLRKPFLKNCLSLMTLTGAKGGMVNF 321
            +R   ES++  LDR MS  LN ITS+VN  +FP GL+KPF  NCLSLMT TGAKGG+VN 
Sbjct: 948  IRRNRESATVMLDRKMSNTLNVITSKVNQELFPYGLQKPFPGNCLSLMTQTGAKGGLVNM 1007

Query: 322  TQISSLLGQQELEGKRVPRMISGKTLPCFSPWDTQPRAGGFISDRFLTGLRPQEYYFHCM 501
            TQISSLLGQQELEGKRVPRMISGKTLPCF  WDT  RAGGFISDRFLTGLRPQEYYFHCM
Sbjct: 1008 TQISSLLGQQELEGKRVPRMISGKTLPCFPSWDTSARAGGFISDRFLTGLRPQEYYFHCM 1067

Query: 502  AGRDGLVDTAVKTSRSGYLQRCLIKNLECLTVFYDHTVRDSDGSVIQFCYGEDGVDVTKS 681
            AGR+GLVDTAVKTSRSGYLQRCLIK+LE L V YDHTVRD DGS+IQFCYGEDGVDV K+
Sbjct: 1068 AGREGLVDTAVKTSRSGYLQRCLIKSLESLKVSYDHTVRDVDGSIIQFCYGEDGVDVLKT 1127

Query: 682  SCLTGFEILAANQKLLSQKLCKEQFNDFTDRKLARKNSSAAVCDTTDIPEKLKEKAHKYI 861
            S L  F+ LA N+K +  KL      D  + K    N +  +   + +P KL   A K++
Sbjct: 1128 SFLDKFKELADNRKAVLHKL------DGLNDKHLLSNPNGYI---SKLPVKLIGSAMKFL 1178

Query: 862  YKLSEKEKHLWKLRKPKKFLDLLRVKYISSLAEPGEAVGVVAGQSVGEPSTQMTLNTFHF 1041
             K +EK+K      + ++ + LL+ KY+SSL +PGEAVGVVA QS+GEPSTQMTLNTFH 
Sbjct: 1179 -KETEKKKLCRYDIEEEELMKLLKAKYLSSLVDPGEAVGVVAAQSIGEPSTQMTLNTFHL 1237

Query: 1042 AGRGEMNVTLGIPRLREILMAASKNILTPVMTCRVKDGKTRE------------------ 1167
            AGRGEMNVTLGIPRL+E+LM AS  I TP M C + + KTR+                  
Sbjct: 1238 AGRGEMNVTLGIPRLKELLMTASAKISTPFMKCPMLEDKTRDDDEQIDAELKKVRDAERR 1297

Query: 1168 --------DAERLAGKFRRIRFADLIETMDVGVVPFAVKAGVMQNTYKLKIKLYSPENYP 1323
                    DA+R+A K RRIR AD++E ++V  VPF    G +   YKL++KLY  E YP
Sbjct: 1298 AAKREKIRDAQRMAVKLRRIRVADVVERIEVCTVPFHNNNGCVSTLYKLQMKLYPRELYP 1357

Query: 1324 SHSGISLEKCKSIFEEVFSKEM 1389
              S +++++C+     VF   M
Sbjct: 1358 PESELTVDECQETLRTVFIDAM 1379



 Score =  203 bits (517), Expect = 3e-49
 Identities = 108/202 (53%), Positives = 144/202 (71%), Gaps = 3/202 (1%)
 Frame = +1

Query: 1870 TSGRTLTWEYSVMENSHILLAPIAEKVANKVYVQSVTNIDKCAV--IEITEKKDDPPIPA 2043
            ++G      Y++ E  HILLA IA++ A  V++++ +NID+C V  I++   K D  I  
Sbjct: 1546 STGLNFEVHYALQEQPHILLAQIAQRTARSVFIKACSNIDQCTVNKIDVDSDKIDEAI-V 1604

Query: 2044 LQTNGINFEAFWKLDNELDINRLMTNDINKVLEVYGVEAACATIVLEVQNVFDSYGITVD 2223
            LQT G+NF  FW L + LDIN + +NDI  VL+ YGVEAA ATI+ EV  VF +YGI V+
Sbjct: 1605 LQTVGVNFGVFWNLVDYLDINEVRSNDIYAVLKTYGVEAARATIIEEVSGVFGAYGIDVN 1664

Query: 2224 RRHLSLIADFMTFNGGYRPLNRIGIDS-STSPFLRISFETATKFLVDSCLQGETDYLASP 2400
            +RHLSLIADFMTF+GGYRP++R G+   STSPF +++FETATKF+V++   GE+D L SP
Sbjct: 1665 KRHLSLIADFMTFDGGYRPMSRNGMGQFSTSPFGKMTFETATKFIVEAASHGESDTLDSP 1724

Query: 2401 SARIVLGQVAKMGTGCFDILQN 2466
            SA I LG+  KMGTG F +LQN
Sbjct: 1725 SASICLGKPVKMGTGTFGLLQN 1746


>gb|ESW17626.1| hypothetical protein PHAVU_007G255400g [Phaseolus vulgaris]
          Length = 1637

 Score =  461 bits (1186), Expect = e-127
 Identities = 246/446 (55%), Positives = 314/446 (70%), Gaps = 2/446 (0%)
 Frame = +1

Query: 58   GDKAHAQFLG-KDAXXXXXXXXXXXXXXXLRSKGESSSARLDRLMSGALNKITSE-VNGS 231
            GD  H +F+G  ++               +RS GE++   LDR M+  LN  TS  +   
Sbjct: 831  GDIVHREFIGVMNSDIIDPITLQLNIEKKIRSNGEAALTYLDRKMTSNLNSRTSSGILKD 890

Query: 232  VFPDGLRKPFLKNCLSLMTLTGAKGGMVNFTQISSLLGQQELEGKRVPRMISGKTLPCFS 411
            +  DG+ KP  KNC+SLMT +GAKG MVNF QISS LGQQELEGKRVPRM+SGKTLPCF+
Sbjct: 891  LLSDGILKPSGKNCISLMTTSGAKGSMVNFQQISSHLGQQELEGKRVPRMVSGKTLPCFA 950

Query: 412  PWDTQPRAGGFISDRFLTGLRPQEYYFHCMAGRDGLVDTAVKTSRSGYLQRCLIKNLECL 591
            PWD  PRAGGFI DRFLTGL PQEYYFHCMAGR+GLVDTAVKTSRSGYLQRCL+KNLECL
Sbjct: 951  PWDCSPRAGGFIIDRFLTGLHPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLMKNLECL 1010

Query: 592  TVFYDHTVRDSDGSVIQFCYGEDGVDVTKSSCLTGFEILAANQKLLSQKLCKEQFNDFTD 771
             V YDHTVRD+DGS+IQF YGEDGVDV  +S +  FE L+ N++L+    C++      D
Sbjct: 1011 KVCYDHTVRDADGSIIQFHYGEDGVDVHHTSFINKFEALSTNKELVYGNCCRQ-----LD 1065

Query: 772  RKLARKNSSAAVCDTTDIPEKLKEKAHKYIYKLSEKEKHLWKLRKPKKFLDLLRVKYISS 951
            R     N          +P+ LKEKA  + ++ S K+++L  L++  +FL L+  KY+S 
Sbjct: 1066 RSSPYINK---------LPDALKEKAENF-FRDSLKQRNLGSLKR-AEFLKLMEHKYVSC 1114

Query: 952  LAEPGEAVGVVAGQSVGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMAASKNILTPV 1131
            LA+PGE+VGV+A QSVGEP+TQMTLNTFH AGRGEMNVTLGIPRL+EI+MAA+++I TP 
Sbjct: 1115 LAQPGESVGVLASQSVGEPATQMTLNTFHLAGRGEMNVTLGIPRLQEIVMAAARDIKTPF 1174

Query: 1132 MTCRVKDGKTREDAERLAGKFRRIRFADLIETMDVGVVPFAVKAGVMQNTYKLKIKLYSP 1311
            MTC ++  K+ E+A  LA K ++I  AD+I++M V VVP +V  G + + YKL +KLY P
Sbjct: 1175 MTCPLRSNKSMEEAICLADKLKKITVADIIKSMKVSVVPVSVLGGQVCSIYKLVMKLYKP 1234

Query: 1312 ENYPSHSGISLEKCKSIFEEVFSKEM 1389
            + YP +S I+LE  +      F +E+
Sbjct: 1235 KQYPKYSDITLEDWEDTLRISFVREL 1260



 Score =  191 bits (484), Expect = 2e-45
 Identities = 99/203 (48%), Positives = 140/203 (68%), Gaps = 18/203 (8%)
 Frame = +1

Query: 1921 ILLAPIAEKVANKVYVQSVTNIDKCAVI-----------EITEKKDDPP------IPALQ 2049
            ILLA IA + A KV +Q+   + +C  +           E + K+DD P      IPALQ
Sbjct: 1435 ILLAEIALRSAKKVCIQNSGRVGECKAVTCKESGVMYYGEDSRKRDDIPASVKEKIPALQ 1494

Query: 2050 TNGINFEAFWKLDNELDINRLMTNDINKVLEVYGVEAACATIVLEVQNVFDSYGITVDRR 2229
            T+G++F+ FW+L ++LD+  + +N+++ +L  YGVEAA  TI+ EVQNVF SYGI+V+ R
Sbjct: 1495 TSGVHFKTFWELQDDLDVRYIYSNNVHAMLNAYGVEAARETIIREVQNVFKSYGISVNIR 1554

Query: 2230 HLSLIADFMTFNGGYRPLNRIG-IDSSTSPFLRISFETATKFLVDSCLQGETDYLASPSA 2406
            HL+LIADFMT +GGYRP+NR G I   TSPF+++ FETA+KF+V++   G+ D L +PS+
Sbjct: 1555 HLTLIADFMTHSGGYRPMNRNGSIADCTSPFIKMCFETASKFIVEAAYHGQVDNLETPSS 1614

Query: 2407 RIVLGQVAKMGTGCFDILQNLEV 2475
            RI LG   KMGTGC D++Q LE+
Sbjct: 1615 RICLGLPVKMGTGCHDLIQKLEI 1637


>ref|XP_006402858.1| hypothetical protein EUTSA_v10005738mg [Eutrema salsugineum]
            gi|557103957|gb|ESQ44311.1| hypothetical protein
            EUTSA_v10005738mg [Eutrema salsugineum]
          Length = 1697

 Score =  460 bits (1184), Expect = e-126
 Identities = 240/417 (57%), Positives = 304/417 (72%), Gaps = 1/417 (0%)
 Frame = +1

Query: 142  LRSKGESSSARLDRLMSGALNKITSE-VNGSVFPDGLRKPFLKNCLSLMTLTGAKGGMVN 318
            L   GES+ A LDR +   LN+ +S+ V   +  DGL KP  KNC+SLMT++GAKG  VN
Sbjct: 914  LYEDGESALASLDRSVVNELNQCSSKGVMNDLLSDGLLKPPGKNCISLMTISGAKGSKVN 973

Query: 319  FTQISSLLGQQELEGKRVPRMISGKTLPCFSPWDTQPRAGGFISDRFLTGLRPQEYYFHC 498
            F QISS LGQQ+LEGKRVPRM+SGKTLPCF PWD  PRAGGFISDRFL+GLRPQEYYFHC
Sbjct: 974  FQQISSHLGQQDLEGKRVPRMVSGKTLPCFHPWDWSPRAGGFISDRFLSGLRPQEYYFHC 1033

Query: 499  MAGRDGLVDTAVKTSRSGYLQRCLIKNLECLTVFYDHTVRDSDGSVIQFCYGEDGVDVTK 678
            MAGR+GLVDTAVKTSRSGYLQRCL+KNLE L V YD TVRD+DGS+IQF YGEDGVDV +
Sbjct: 1034 MAGREGLVDTAVKTSRSGYLQRCLMKNLESLKVNYDCTVRDADGSIIQFQYGEDGVDVHR 1093

Query: 679  SSCLTGFEILAANQKLLSQKLCKEQFNDFTDRKLARKNSSAAVCDTTDIPEKLKEKAHKY 858
            SS +  F  L  NQ ++ Q+  ++  +           SS+ +   TD+P  LK  A K+
Sbjct: 1094 SSFIGKFRELTVNQDMILQRCSEDMLS----------GSSSYI---TDLPITLKNGAEKF 1140

Query: 859  IYKLSEKEKHLWKLRKPKKFLDLLRVKYISSLAEPGEAVGVVAGQSVGEPSTQMTLNTFH 1038
            +  +   E+   KL + +  L L++ K+ +SLA+PGE VGV+A QSVGEPSTQMTLNTFH
Sbjct: 1141 VEAMPMNERIASKLVRQEDLLKLVKSKFFASLAQPGEPVGVLAAQSVGEPSTQMTLNTFH 1200

Query: 1039 FAGRGEMNVTLGIPRLREILMAASKNILTPVMTCRVKDGKTREDAERLAGKFRRIRFADL 1218
             AGRGEMNVTLGIPRL+EILM A+ NI TP+MTC +  GKT +DA+++  K R+I  AD+
Sbjct: 1201 LAGRGEMNVTLGIPRLQEILMTAAANIKTPIMTCPLLKGKTTDDAKKITDKLRKIAVADI 1260

Query: 1219 IETMDVGVVPFAVKAGVMQNTYKLKIKLYSPENYPSHSGISLEKCKSIFEEVFSKEM 1389
            I++M+V V+P+AV  G + + +KLKIKLY PE+YP H+ I+ E  K     +F +++
Sbjct: 1261 IKSMEVSVIPYAVHEGEVCSIHKLKIKLYKPEHYPKHTDITDEDWKETMTVMFLRKL 1317



 Score =  184 bits (466), Expect = 2e-43
 Identities = 100/219 (45%), Positives = 141/219 (64%), Gaps = 19/219 (8%)
 Frame = +1

Query: 1876 GRTLTWEYSVM-ENSHILLAPIAEKVANKVYVQSVTNIDKCAVIEITEKK-----DDPP- 2034
            G+T    +  + E  HILL+ IA+K A KVY+Q+   I++  V    + +     D+P  
Sbjct: 1479 GKTFEVHFKFLSEEPHILLSQIAQKTAQKVYIQNSGKIERSTVANCGDPQVIYYGDNPKE 1538

Query: 2035 -----------IPALQTNGINFEAFWKLDNELDINRLMTNDINKVLEVYGVEAACATIVL 2181
                        PAL  +G++F A W+  ++LD+  L +N I+ +L  +GVEAA  TI+ 
Sbjct: 1539 REEISNDEKKASPALHASGVDFLALWEYQDKLDVRYLYSNSIHDMLNTFGVEAARETIIR 1598

Query: 2182 EVQNVFDSYGITVDRRHLSLIADFMTFNGGYRPLNRI-GIDSSTSPFLRISFETATKFLV 2358
            E+ +VF SYGI+V  RHL+LIAD+MTF+GGYRP++R+ GI  STSPF R++FETATKF+V
Sbjct: 1599 EINHVFKSYGISVSIRHLNLIADYMTFSGGYRPMSRMGGIAESTSPFCRMTFETATKFIV 1658

Query: 2359 DSCLQGETDYLASPSARIVLGQVAKMGTGCFDILQNLEV 2475
             +   GE D L +PSARI LG  A  GTGCFD+LQ +E+
Sbjct: 1659 QAATYGEVDRLETPSARICLGLPALSGTGCFDLLQRMEL 1697


>ref|XP_003607990.1| DNA-directed RNA polymerase subunit beta [Medicago truncatula]
            gi|355509045|gb|AES90187.1| DNA-directed RNA polymerase
            subunit beta [Medicago truncatula]
          Length = 1628

 Score =  454 bits (1169), Expect = e-125
 Identities = 247/446 (55%), Positives = 305/446 (68%), Gaps = 2/446 (0%)
 Frame = +1

Query: 58   GDKAHAQFLG-KDAXXXXXXXXXXXXXXXLRSKGESSSARLDRLMSGALNKITSE-VNGS 231
            GD  H +F+G  ++               +RS GE++   LDR M   LN  TS  V   
Sbjct: 824  GDIVHREFIGVMESENIDPITMQLNVEKKIRSNGEAAITYLDRKMISNLNSRTSSGVLKE 883

Query: 232  VFPDGLRKPFLKNCLSLMTLTGAKGGMVNFTQISSLLGQQELEGKRVPRMISGKTLPCFS 411
            +   G  KP  KN +SLMT +GAKG MVNF QISS LGQQELEGKRVPRM+SGKTLPCF 
Sbjct: 884  LLSKGSLKPSGKNWISLMTTSGAKGSMVNFQQISSHLGQQELEGKRVPRMVSGKTLPCFP 943

Query: 412  PWDTQPRAGGFISDRFLTGLRPQEYYFHCMAGRDGLVDTAVKTSRSGYLQRCLIKNLECL 591
             WD  PRAGGFI DRFLT LRPQEYYFHCMAGR+GLVDTAVKTSRSGYLQRCL+KNLE L
Sbjct: 944  SWDCSPRAGGFIIDRFLTALRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLMKNLESL 1003

Query: 592  TVFYDHTVRDSDGSVIQFCYGEDGVDVTKSSCLTGFEILAANQKLLSQKLCKEQFNDFTD 771
             V YDHTVRDSDGS+IQF YGEDGVDV ++S +  FE L+ N++L+    C++      D
Sbjct: 1004 KVCYDHTVRDSDGSIIQFHYGEDGVDVHQTSFINKFEALSINKELIYSNCCRQ-----LD 1058

Query: 772  RKLARKNSSAAVCDTTDIPEKLKEKAHKYIYKLSEKEKHLWKLRKPKKFLDLLRVKYISS 951
            R     N          +P+ LK KA  +I   S K+++   + K   FL ++  KY+SS
Sbjct: 1059 RSSPYINK---------LPDALKGKAENFIRDFSSKQRNSSSM-KEADFLQVMEHKYVSS 1108

Query: 952  LAEPGEAVGVVAGQSVGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMAASKNILTPV 1131
            LA+PGE VGV+A QSVGEP+TQMTLNTFH AGRGEMNVTLGIPRL EI++AASKNI TP 
Sbjct: 1109 LAQPGEPVGVLASQSVGEPATQMTLNTFHLAGRGEMNVTLGIPRLHEIVVAASKNIKTPF 1168

Query: 1132 MTCRVKDGKTREDAERLAGKFRRIRFADLIETMDVGVVPFAVKAGVMQNTYKLKIKLYSP 1311
            MTC ++  K+ EDA RLA K ++I  AD+IE+M V VVP AVK G + + YKL +KL+ P
Sbjct: 1169 MTCPLRPNKSMEDAIRLADKMKKITVADIIESMKVSVVPVAVKEGRICSIYKLTMKLHKP 1228

Query: 1312 ENYPSHSGISLEKCKSIFEEVFSKEM 1389
            ++YP ++ ++LE  +      F +E+
Sbjct: 1229 KHYPKYTDVTLEDWEETLRVGFVREL 1254



 Score =  197 bits (501), Expect = 2e-47
 Identities = 100/203 (49%), Positives = 139/203 (68%), Gaps = 17/203 (8%)
 Frame = +1

Query: 1918 HILLAPIAEKVANKVYVQSVTNIDKCAVIEITE-----------KKDDPP------IPAL 2046
            HILLA IA++ A KV +Q+   + +C  I   E           K+DD P      IPAL
Sbjct: 1426 HILLAQIAQRTAEKVCIQNFGKVGQCKAITCKESGVIYYGEDDSKRDDIPSSVKEKIPAL 1485

Query: 2047 QTNGINFEAFWKLDNELDINRLMTNDINKVLEVYGVEAACATIVLEVQNVFDSYGITVDR 2226
            QT+GI+F+ FW+++++L +  + +ND++ +L+ YGVEAA   I+ EVQNVF SYGI+V+ 
Sbjct: 1486 QTSGIHFKTFWEMEDDLKVRYVYSNDVHAILKAYGVEAAKEVIIREVQNVFKSYGISVNI 1545

Query: 2227 RHLSLIADFMTFNGGYRPLNRIGIDSSTSPFLRISFETATKFLVDSCLQGETDYLASPSA 2406
            RHL LIADFMT +G YRPL R GI  STSPF++IS+ETA+ F+V++   G+ D L +PS+
Sbjct: 1546 RHLMLIADFMTHSGSYRPLTRSGIADSTSPFVKISYETASNFIVEAARHGQVDTLETPSS 1605

Query: 2407 RIVLGQVAKMGTGCFDILQNLEV 2475
            RI LG   KMGTGC D++Q LE+
Sbjct: 1606 RICLGLPVKMGTGCIDLIQKLEI 1628


>ref|XP_003559192.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa1-like
            [Brachypodium distachyon]
          Length = 1868

 Score =  454 bits (1167), Expect = e-124
 Identities = 231/417 (55%), Positives = 307/417 (73%), Gaps = 1/417 (0%)
 Frame = +1

Query: 142  LRSKGESSSARLDRLMSGALNKITSEVNGSVFPDGLRKPFLKNCLSLMTLTGAKGGMVNF 321
            +R  GES++  LD++M  ALN + SEVN  +FP GL+KPF +NCL+LMT TGAKGG VN 
Sbjct: 1078 VRRIGESATDTLDKMMLSALNGLQSEVNRRLFPYGLQKPFPRNCLTLMTATGAKGGEVNM 1137

Query: 322  TQISSLLGQQELEGKRVPRMISGKTLPCFSPWDTQPRAGGFISDRFLTGLRPQEYYFHCM 501
            TQI+SLLG Q+LEG RVPRMISGK+LPCF PWDT  RAGGF+SDRFLTGLRPQEYYFHCM
Sbjct: 1138 TQITSLLGSQDLEGARVPRMISGKSLPCFPPWDTSSRAGGFVSDRFLTGLRPQEYYFHCM 1197

Query: 502  AGRDGLVDTAVKTSRSGYLQRCLIKNLECLTVFYDHTVRDSDGSVIQFCYGEDGVDVTKS 681
            AGR+GL+DTAVKTSRSGYLQRCL+K+LE L V YDHTVR+ DGS++QF YGEDGVDV KS
Sbjct: 1198 AGRNGLIDTAVKTSRSGYLQRCLVKSLESLFVAYDHTVRNVDGSIVQFRYGEDGVDVHKS 1257

Query: 682  SCLTGFEILAANQKLL-SQKLCKEQFNDFTDRKLARKNSSAAVCDTTDIPEKLKEKAHKY 858
            + L  F+     ++L  ++K   ++   +T   ++ +++       T++PE L ++A K+
Sbjct: 1258 NFLDKFQDKDMFKELADNRKAVLDRLGRYTGDHMSLQSNY-----ITELPEALTDRATKF 1312

Query: 859  IYKLSEKEKHLWKLRKPKKFLDLLRVKYISSLAEPGEAVGVVAGQSVGEPSTQMTLNTFH 1038
            + K   + +H     K  + ++LL+ KY++SL +PGEAVGV+  QS+GEPSTQMTLNTFH
Sbjct: 1313 LSKDKGRCRH---DIKEDELMNLLKAKYLASLVDPGEAVGVILAQSLGEPSTQMTLNTFH 1369

Query: 1039 FAGRGEMNVTLGIPRLREILMAASKNILTPVMTCRVKDGKTREDAERLAGKFRRIRFADL 1218
            FAGR ++NVTLG+PR++EILM AS NI TPVM C + +  T +DAERLA K R +R  D+
Sbjct: 1370 FAGRSDVNVTLGMPRIQEILMKASANIATPVMMCPLLEDVTWDDAERLAAKLRGVRLVDI 1429

Query: 1219 IETMDVGVVPFAVKAGVMQNTYKLKIKLYSPENYPSHSGISLEKCKSIFEEVFSKEM 1389
            +E ++V  VPF    G + + YKL+IKL+ PE YP  S +++++C++    VF   M
Sbjct: 1430 VEGIEVCTVPFYNNNGYVSSLYKLQIKLFPPERYPPQSELTVDECQTALRTVFVDSM 1486



 Score =  170 bits (431), Expect = 3e-39
 Identities = 98/208 (47%), Positives = 136/208 (65%), Gaps = 5/208 (2%)
 Frame = +1

Query: 1858 TVSVTS-GRTLTWEYSVMENS-HILLAPIAEKVANKVYVQSVTN--IDKCAVIEITEKKD 2025
            TV V S G      Y ++ N  HILL+ IA+K    ++V+   N  ID+C V+   EKK 
Sbjct: 1655 TVHVESTGLNFEVHYLLLHNEPHILLSQIAQKTLRSLFVKGSHNNKIDQCKVVW-PEKKG 1713

Query: 2026 DPPIPALQTNGINFEAFWKLDNELDINRLMTNDINKVLEVYGVEAACATIVLEVQNVFDS 2205
            D     L+T G+NF+ FW L + LDI ++ +NDI+ +L  YGVEAA ATI+ EV+ VF+ 
Sbjct: 1714 D--FRGLKTAGVNFDVFWGLQDYLDICKVASNDIHAILRTYGVEAARATIIKEVKAVFEP 1771

Query: 2206 YGITVDRRHLSLIADFMTFNGGYRPLNRIGI-DSSTSPFLRISFETATKFLVDSCLQGET 2382
            +GI V+RRHLSL+A+FMT  G YR ++ +G+    TSPF +++FE AT+F+ ++   GE 
Sbjct: 1772 FGINVNRRHLSLVAEFMTSGGDYRAMSSMGMAQFCTSPFGKMTFEQATRFITEAAFYGEA 1831

Query: 2383 DYLASPSARIVLGQVAKMGTGCFDILQN 2466
            D L  PSA I LG+ AK GTGCF +LQN
Sbjct: 1832 DNLNGPSATISLGKPAKTGTGCFGLLQN 1859


>gb|EMS52925.1| DNA-directed RNA polymerase I subunit rpa1 [Triticum urartu]
          Length = 1915

 Score =  452 bits (1164), Expect = e-124
 Identities = 246/464 (53%), Positives = 316/464 (68%), Gaps = 21/464 (4%)
 Frame = +1

Query: 61   DKAHAQFLGKDAXXXXXXXXXXXXXXXLRSKGESSSARLDRLMSGALNKITSEVNGSVFP 240
            ++AH +FL K                 +R  GES++  LD+ M   LN +T++VN ++FP
Sbjct: 1062 EEAHKKFLCKKDVDTDLVELQMNIEKVVRRIGESANVALDKAMLSELNGLTTKVNKNMFP 1121

Query: 241  DGLRKPFLKNCLSLMTLTGAKGGMVNFTQISSLLGQQELEGKRVPRMISGKTLPCFSPWD 420
             GL+KPF KNCL+LMT TGAKGG VN TQISSLLG Q+LEG RVPRMISGK+LPCF PWD
Sbjct: 1122 YGLQKPFPKNCLTLMTATGAKGGDVNMTQISSLLGSQDLEGARVPRMISGKSLPCFPPWD 1181

Query: 421  TQPRAGGFISDRFLTGLRPQEYYFHCMAGRDG-------------LVDTAVKTSRSGYLQ 561
               RAGG++SDRFLTGLRPQEYYFHCMAGR+G             L+DTAVKTSRSGYLQ
Sbjct: 1182 GSSRAGGYVSDRFLTGLRPQEYYFHCMAGRNGHTWLFVFVRSGDKLIDTAVKTSRSGYLQ 1241

Query: 562  RCLIKNLECLTVFYDHTVRDSDGSVIQFCYGEDGVDVTKSSCLTGFEILAANQKLLSQKL 741
            RCLIK+LE L V YDH+VR+ DGS+IQFCYGEDGVDV KSS L  F+ LA N+K +S +L
Sbjct: 1242 RCLIKSLESLFVSYDHSVRNVDGSIIQFCYGEDGVDVHKSSFLKKFKELADNRKAVSDRL 1301

Query: 742  C--KEQFNDFTDRKLARKNSSAAVCDTTDIPEKLKEKA---HKYIYKLSEKEKHLWKLR- 903
               K + + +    L+ K+        T +P++L + A   HK       K K   + R 
Sbjct: 1302 ARYKGELDIYNGDPLSFKSKY-----ITKLPQELTKSATNFHKENKCCCRKLKKKCRCRY 1356

Query: 904  --KPKKFLDLLRVKYISSLAEPGEAVGVVAGQSVGEPSTQMTLNTFHFAGRGEMNVTLGI 1077
              K ++ + LL+VKY++SL +PGEAVGV+  QS+GEPSTQMTLNTFH AGRG+MNVTLG+
Sbjct: 1357 NIKEEELMKLLKVKYVASLVDPGEAVGVILAQSLGEPSTQMTLNTFHLAGRGDMNVTLGM 1416

Query: 1078 PRLREILMAASKNILTPVMTCRVKDGKTREDAERLAGKFRRIRFADLIETMDVGVVPFAV 1257
            PR++EILM AS NI TP M C V +GK R+DA RLA K R +  AD++E ++V  VPF  
Sbjct: 1417 PRIQEILMKASANIGTPYMKCPVHEGKKRKDAARLAEKLRGVTLADVVEGIEVCTVPFHN 1476

Query: 1258 KAGVMQNTYKLKIKLYSPENYPSHSGISLEKCKSIFEEVFSKEM 1389
              G + + YKL +KL+SP+ YP  S +++++C++    VF   M
Sbjct: 1477 SNGHISSLYKLHLKLFSPDCYPPESELTVDECQASLRTVFVDAM 1520



 Score =  163 bits (413), Expect = 3e-37
 Identities = 90/206 (43%), Positives = 128/206 (62%), Gaps = 15/206 (7%)
 Frame = +1

Query: 1897 YSVMENSHILLAPIAEKVANKVYVQSV--TNIDKCAVIEITEKKD------------DPP 2034
            Y + +  HILL+ IA+K    ++V      NI  C VI   +KK             +  
Sbjct: 1702 YILHKEPHILLSQIAQKTLRSLFVSGSHNKNIGLCNVIWPEKKKKGETETKQKETEREEA 1761

Query: 2035 IPALQTNGINFEAFWKLDNELDINRLMTNDINKVLEVYGVEAACATIVLEVQNVFDSYGI 2214
               LQT+G++FE FW L + L++ +L +NDI+ +L  YGVEAA ATI+ EV+ VF+ +GI
Sbjct: 1762 YRGLQTSGLDFEVFWDLQDFLNVRKLTSNDIHAMLRTYGVEAARATIINEVKAVFEPFGI 1821

Query: 2215 TVDRRHLSLIADFMTFNGGYRPLNRIGIDS-STSPFLRISFETATKFLVDSCLQGETDYL 2391
             VD RHLSL AD+MT  G YRP+N +G+    TSPF ++SFE AT+F++++   GE D L
Sbjct: 1822 KVDPRHLSLAADYMTSGGSYRPMNSLGMARFCTSPFGKMSFEQATRFIMEAAYHGEVDNL 1881

Query: 2392 ASPSARIVLGQVAKMGTGCFDILQNL 2469
              PSA + LG+ AK GTG F ++QN+
Sbjct: 1882 TGPSATVSLGKPAKTGTGAFGLMQNI 1907


>ref|XP_004513652.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa1-like [Cicer
            arietinum]
          Length = 1660

 Score =  450 bits (1158), Expect = e-123
 Identities = 242/432 (56%), Positives = 301/432 (69%), Gaps = 2/432 (0%)
 Frame = +1

Query: 58   GDKAHAQFLG-KDAXXXXXXXXXXXXXXXLRSKGESSSARLDRLMSGALNKITSE-VNGS 231
            GD  H +F+G  +                +RS GE++   LDR M   LN  TS  V   
Sbjct: 837  GDIVHREFIGVMEGDNIDPITMQLNVEKKIRSNGEAAITYLDRKMISNLNSRTSSGVLKE 896

Query: 232  VFPDGLRKPFLKNCLSLMTLTGAKGGMVNFTQISSLLGQQELEGKRVPRMISGKTLPCFS 411
            +  +G+ KP  KN +SLMT +GAKG MVNF QISS LGQQELEGKRVPRM+SGKTLPCF+
Sbjct: 897  LLSEGILKPSGKNWISLMTTSGAKGSMVNFQQISSHLGQQELEGKRVPRMVSGKTLPCFT 956

Query: 412  PWDTQPRAGGFISDRFLTGLRPQEYYFHCMAGRDGLVDTAVKTSRSGYLQRCLIKNLECL 591
             WD  PRAGGFI DRFLT LRPQEYYFHCMAGR+GLVDTAVKTSRSGYLQRCL+KNLECL
Sbjct: 957  SWDCSPRAGGFIIDRFLTALRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLMKNLECL 1016

Query: 592  TVFYDHTVRDSDGSVIQFCYGEDGVDVTKSSCLTGFEILAANQKLLSQKLCKEQFNDFTD 771
             V YDHTVRD+DGS+IQF YGEDGVDV ++S +  FE L+ N++L+    C+E       
Sbjct: 1017 KVCYDHTVRDADGSIIQFHYGEDGVDVHQTSFINKFEALSTNKELVYSNCCRE------- 1069

Query: 772  RKLARKNSSAAVCDTTDIPEKLKEKAHKYIYKLSEKEKHLWKLRKPKKFLDLLRVKYISS 951
                   SS  +     +P+ LK KA K+I   S K+++   +     FL L+  KY+SS
Sbjct: 1070 ----LDESSPYI---NKLPDALKGKAEKFIRDSSSKQRNSGSMTH-TNFLQLMEHKYVSS 1121

Query: 952  LAEPGEAVGVVAGQSVGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMAASKNILTPV 1131
            LA+PGE VGV+A QSVGEP+TQMTLNTFH AGRGEMNVTLGIPRL+EIL AAS +I TP 
Sbjct: 1122 LAQPGEPVGVLASQSVGEPATQMTLNTFHLAGRGEMNVTLGIPRLQEILTAASAHIKTPF 1181

Query: 1132 MTCRVKDGKTREDAERLAGKFRRIRFADLIETMDVGVVPFAVKAGVMQNTYKLKIKLYSP 1311
            MTC ++  K+ EDA RLA K ++I  AD+IE+M V VVP  V+ G + + YKL +KL+ P
Sbjct: 1182 MTCPLRPNKSMEDAIRLADKMKKITVADIIESMKVSVVPVTVQDGRICSIYKLMMKLHKP 1241

Query: 1312 ENYPSHSGISLE 1347
            ++YP ++ ++L+
Sbjct: 1242 KHYPKYTDVTLK 1253



 Score =  183 bits (465), Expect = 3e-43
 Identities = 100/214 (46%), Positives = 141/214 (65%), Gaps = 22/214 (10%)
 Frame = +1

Query: 1897 YSVMENSHILLAP----IAEKVANKVYVQSVTNIDKCAVIEITE-----------KKDDP 2031
            +   +  HILLA     IA+K A KV +Q+   + +C  I   E           K+++ 
Sbjct: 1446 FKFTDEPHILLAQLLSTIAQKTAEKVCIQNFGKVGQCKAITCKESGVIYYGEDDSKREEI 1505

Query: 2032 P------IPALQTNGINFEAFWKLDNELDINRLMTNDINKVLEVYGVEAACATIVLEVQN 2193
            P      IPALQT+GI+F++FW++ ++L++  + +N+++ +L  YGVEAA  TI+ EVQN
Sbjct: 1506 PSSVKEKIPALQTSGIHFKSFWEMQDDLNVRYVYSNNVHAILSTYGVEAAKETIIREVQN 1565

Query: 2194 VFDSYGITVDRRHLSLIADFMTFNGGYRPLNRIG-IDSSTSPFLRISFETATKFLVDSCL 2370
            VF SYGI+V+ RHL LIADFMT +G YRP++R G I  STSPFL+I FETA+ F+V++  
Sbjct: 1566 VFKSYGISVNIRHLMLIADFMTHSGCYRPMSRKGSIADSTSPFLKICFETASNFIVEAAC 1625

Query: 2371 QGETDYLASPSARIVLGQVAKMGTGCFDILQNLE 2472
             G+ D L SPSARI LG   KMGTGC +++Q LE
Sbjct: 1626 HGQVDNLDSPSARICLGLPVKMGTGCHELIQKLE 1659


>ref|XP_004513648.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa1-like [Cicer
            arietinum]
          Length = 1650

 Score =  449 bits (1156), Expect = e-123
 Identities = 242/432 (56%), Positives = 301/432 (69%), Gaps = 2/432 (0%)
 Frame = +1

Query: 58   GDKAHAQFLG-KDAXXXXXXXXXXXXXXXLRSKGESSSARLDRLMSGALNKITSE-VNGS 231
            GD  H +F+G  +                +RS GE++   LDR M   LN  TS  V   
Sbjct: 833  GDIVHREFIGVMEGDNIDPITMQLNVEKKIRSNGEAAITYLDRKMISNLNSRTSTGVLKV 892

Query: 232  VFPDGLRKPFLKNCLSLMTLTGAKGGMVNFTQISSLLGQQELEGKRVPRMISGKTLPCFS 411
            +  +G+ KP  KN +SLMT +GAKG MVNF QISS LGQQELEGKRVPRM+SGKTLPCF+
Sbjct: 893  LLSEGILKPSGKNWISLMTTSGAKGSMVNFQQISSHLGQQELEGKRVPRMVSGKTLPCFT 952

Query: 412  PWDTQPRAGGFISDRFLTGLRPQEYYFHCMAGRDGLVDTAVKTSRSGYLQRCLIKNLECL 591
             WD  PRAGGFI DRFLT LRPQEYYFHCMAGR+GLVDTAVKTSRSGYLQRCL+KNLECL
Sbjct: 953  SWDCSPRAGGFIIDRFLTALRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLMKNLECL 1012

Query: 592  TVFYDHTVRDSDGSVIQFCYGEDGVDVTKSSCLTGFEILAANQKLLSQKLCKEQFNDFTD 771
             V YDHTVRD+DGS+IQF YGEDGVDV ++S +  FE L+ N++L+    C+E      D
Sbjct: 1013 KVCYDHTVRDADGSIIQFHYGEDGVDVHQTSFINKFEALSTNKELVYSNCCRE-----LD 1067

Query: 772  RKLARKNSSAAVCDTTDIPEKLKEKAHKYIYKLSEKEKHLWKLRKPKKFLDLLRVKYISS 951
            +     N          +P+ LK KA K+I   S K+++   +     FL L+  KY+SS
Sbjct: 1068 KSSPYINK---------LPDALKGKAEKFILDSSSKQRNSGSMTH-TNFLHLMEHKYVSS 1117

Query: 952  LAEPGEAVGVVAGQSVGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMAASKNILTPV 1131
            LA+PGE VGV+A QSVGEP+TQMTLNTFH AGRGEMNVTLGIPRL+EIL AAS +I TP 
Sbjct: 1118 LAQPGEPVGVLASQSVGEPATQMTLNTFHLAGRGEMNVTLGIPRLQEILTAASAHIKTPF 1177

Query: 1132 MTCRVKDGKTREDAERLAGKFRRIRFADLIETMDVGVVPFAVKAGVMQNTYKLKIKLYSP 1311
            MTC ++  K+ EDA RLA K ++I  AD+IE+M V VVP  V+ G + + YKL +KL+ P
Sbjct: 1178 MTCPLRPNKSMEDAIRLADKMKKITVADIIESMKVSVVPVTVQDGRICSIYKLMMKLHKP 1237

Query: 1312 ENYPSHSGISLE 1347
            ++YP ++ ++L+
Sbjct: 1238 KHYPKYTDVTLK 1249



 Score =  188 bits (478), Expect = 9e-45
 Identities = 100/203 (49%), Positives = 139/203 (68%), Gaps = 18/203 (8%)
 Frame = +1

Query: 1918 HILLAPIAEKVANKVYVQSVTNIDKCAVIEITE-----------KKDDPP------IPAL 2046
            HILLA IA+K A KV +Q+   + +C  I   E           K+++ P      IPAL
Sbjct: 1447 HILLAQIAQKTAEKVCIQNFGKVGQCKAITCKESGVIYYGEDDSKREEIPSSVKEKIPAL 1506

Query: 2047 QTNGINFEAFWKLDNELDINRLMTNDINKVLEVYGVEAACATIVLEVQNVFDSYGITVDR 2226
            QT+GI+F++FW++ ++L++  + +N+++ +L  YGVEAA  TI+ EVQNVF SYGI+V+ 
Sbjct: 1507 QTSGIHFKSFWEMQDDLNVRYVYSNNVHAILSTYGVEAAKETIIREVQNVFKSYGISVNI 1566

Query: 2227 RHLSLIADFMTFNGGYRPLNRIG-IDSSTSPFLRISFETATKFLVDSCLQGETDYLASPS 2403
            RHL LIADFMT +G YRP++R G I  STSPFL+I FETA+ F+V++   G+ D L SPS
Sbjct: 1567 RHLMLIADFMTHSGCYRPMSRKGSIADSTSPFLKICFETASNFIVEAACHGQVDNLDSPS 1626

Query: 2404 ARIVLGQVAKMGTGCFDILQNLE 2472
            ARI LG   KMGTGC +++Q LE
Sbjct: 1627 ARICLGLPVKMGTGCHELIQKLE 1649