BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ephedra25_contig00009911
         (1191 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAX19931.1| viral replicase [Nandina mosaic virus]                 785   0.0  
dbj|BAG12143.1| RNA-dependent RNA polymerase [Plantago asiatica ...   777   0.0  
dbj|BAG12153.1| RNA-dependent RNA polymerase [Plantago asiatica ...   776   0.0  
ref|NP_620836.1| replicase [Plantago asiatica mosaic virus] gi|1...   775   0.0  
dbj|BAG12148.1| RNA-dependent RNA polymerase [Plantago asiatica ...   774   0.0  
dbj|BAG12133.1| RNA-dependent RNA polymerase [Plantago asiatica ...   774   0.0  
dbj|BAG12128.1| RNA-dependent RNA polymerase [Plantago asiatica ...   774   0.0  
dbj|BAG12123.1| RNA-dependent RNA polymerase [Plantago asiatica ...   774   0.0  
dbj|BAG12138.1| RNA-dependent RNA polymerase [Plantago asiatica ...   773   0.0  
gb|AGW45386.1| RNA-dependent RNA polymerase, partial [Plantago a...   772   0.0  
ref|NP_702988.1| RNA-dependent RNA polymerase [Tulip virus X] gi...   690   0.0  
gb|ADE10202.1| viral replicase [Hydrangea ringspot virus]             587   e-165
ref|YP_224084.1| viral replicase [Hydrangea ringspot virus] gi|5...   583   e-164
ref|NP_042695.1| RNA-dependent RNA polymerase [Cassava common mo...   539   e-151
ref|YP_002647027.1| replicase [Allium virus X] gi|224579235|gb|A...   529   e-148
gb|AFM77886.1| replicase [Hosta virus X]                              524   e-146
ref|YP_002308464.1| replicase [Hosta virus X] gi|58415284|emb|CA...   524   e-146
ref|NP_077079.1| replicase [Clover yellow mosaic virus]               515   e-143
ref|YP_004849314.1| replicase [Tamus red mosaic virus] gi|345548...   510   e-142
gb|AAF67818.1|AF111193_1 replicase [Potato virus X]                   505   e-140

>gb|AAX19931.1| viral replicase [Nandina mosaic virus]
          Length = 1368

 Score =  785 bits (2028), Expect = 0.0
 Identities = 378/396 (95%), Positives = 391/396 (98%)
 Frame = -3

Query: 1189 FEREIFTEAHGHTNCVQGDDPTTQLFSHQQAKDEALLWETIKARLTISTPEANLEEFRAK 1010
            F+REIFTEAHGHTNCVQ DDPTTQLFSHQQAKDEALLWETIKARLTISTPEAN+EEFRAK
Sbjct: 945  FDREIFTEAHGHTNCVQTDDPTTQLFSHQQAKDEALLWETIKARLTISTPEANIEEFRAK 1004

Query: 1009 KDLGDILWANYHKAMKLPKEQPEFSEDLWTRCAEEVQNTYLKKSISQIKGGERRQSPDFH 830
            KDLGDILW NYHKAM LPKEQP+FSE+LWTRCAEEVQNTYLKKS++Q+KGGERRQSPDFH
Sbjct: 1005 KDLGDILWTNYHKAMNLPKEQPDFSEELWTRCAEEVQNTYLKKSLNQLKGGERRQSPDFH 1064

Query: 829  EHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDALSPNNI 650
            EHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDALSPNNI
Sbjct: 1065 EHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDALSPNNI 1124

Query: 649  MINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIE 470
            MINCEKTPQDLSRWVL+YWDFSKP+YANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIE
Sbjct: 1125 MINCEKTPQDLSRWVLSYWDFSKPAYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIE 1184

Query: 469  GYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTECNIAYTHTRFEIPEGTAQIYAGDDCAI 290
            GYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTECNIAYTHTRF IPEGTAQIYAGDDCAI
Sbjct: 1185 GYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTECNIAYTHTRFNIPEGTAQIYAGDDCAI 1244

Query: 289  AQVCPEKPSFALLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELA 110
            AQVCPEKPSFALLK+RIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELA
Sbjct: 1245 AQVCPEKPSFALLKDRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELA 1304

Query: 109  KAQKKAGVKDAISNVIANYSLDAKLAYSLGDDLQDL 2
            KAQKKAGVKDAI+NV+ANYSLDAKLAYSLGD+L DL
Sbjct: 1305 KAQKKAGVKDAITNVVANYSLDAKLAYSLGDELHDL 1340


>dbj|BAG12143.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
          Length = 1380

 Score =  777 bits (2007), Expect = 0.0
 Identities = 375/396 (94%), Positives = 385/396 (97%)
 Frame = -3

Query: 1189 FEREIFTEAHGHTNCVQGDDPTTQLFSHQQAKDEALLWETIKARLTISTPEANLEEFRAK 1010
            F+REIF  AHGHTNCVQ DDPTTQLFSHQQAKDEALLWETI ARLT+S PEANL EFRAK
Sbjct: 957  FDREIFNPAHGHTNCVQTDDPTTQLFSHQQAKDEALLWETINARLTLSNPEANLAEFRAK 1016

Query: 1009 KDLGDILWANYHKAMKLPKEQPEFSEDLWTRCAEEVQNTYLKKSISQIKGGERRQSPDFH 830
            KDLGDILW NY KAMKLP EQP+FSEDLW RCAEEVQNTYLKKS+SQIKGGERRQSPDFH
Sbjct: 1017 KDLGDILWENYRKAMKLPSEQPDFSEDLWIRCAEEVQNTYLKKSVSQIKGGERRQSPDFH 1076

Query: 829  EHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDALSPNNI 650
            EHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDAL PNNI
Sbjct: 1077 EHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDALRPNNI 1136

Query: 649  MINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIE 470
            MINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIE
Sbjct: 1137 MINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIE 1196

Query: 469  GYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTECNIAYTHTRFEIPEGTAQIYAGDDCAI 290
            GYLDIKLSPKIF+GTL+IMRLTGEGPTFDANTECNIAYTHTRF+IPEGTAQIYAGDDCAI
Sbjct: 1197 GYLDIKLSPKIFMGTLTIMRLTGEGPTFDANTECNIAYTHTRFDIPEGTAQIYAGDDCAI 1256

Query: 289  AQVCPEKPSFALLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELA 110
            AQVCPEKPSF+LLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELA
Sbjct: 1257 AQVCPEKPSFSLLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELA 1316

Query: 109  KAQKKAGVKDAISNVIANYSLDAKLAYSLGDDLQDL 2
            KAQKKAGVKDAI+NV+ANYSLDAKLAYSLGDDLQDL
Sbjct: 1317 KAQKKAGVKDAITNVVANYSLDAKLAYSLGDDLQDL 1352


>dbj|BAG12153.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
          Length = 1380

 Score =  776 bits (2005), Expect = 0.0
 Identities = 375/396 (94%), Positives = 385/396 (97%)
 Frame = -3

Query: 1189 FEREIFTEAHGHTNCVQGDDPTTQLFSHQQAKDEALLWETIKARLTISTPEANLEEFRAK 1010
            F+REIF   HGHTNCVQ DDPTTQLFSHQQAKDEALLWETI ARLTIS PEANL EFRAK
Sbjct: 957  FDREIFNPTHGHTNCVQTDDPTTQLFSHQQAKDEALLWETINARLTISNPEANLAEFRAK 1016

Query: 1009 KDLGDILWANYHKAMKLPKEQPEFSEDLWTRCAEEVQNTYLKKSISQIKGGERRQSPDFH 830
            KDLGDILW NY KAMKLP EQP+FSEDLW RCAEEVQNTYLKKS++QIKGGERRQSPDFH
Sbjct: 1017 KDLGDILWENYRKAMKLPNEQPDFSEDLWIRCAEEVQNTYLKKSVAQIKGGERRQSPDFH 1076

Query: 829  EHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDALSPNNI 650
            EHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFR+ALSPNNI
Sbjct: 1077 EHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFREALSPNNI 1136

Query: 649  MINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIE 470
            MINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIE
Sbjct: 1137 MINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIE 1196

Query: 469  GYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTECNIAYTHTRFEIPEGTAQIYAGDDCAI 290
            GYLDIKLSPKIFLGTL+IMRLTGEGPTFDANTECNIAYTHTRF+IPEGTAQIYAGDDCAI
Sbjct: 1197 GYLDIKLSPKIFLGTLTIMRLTGEGPTFDANTECNIAYTHTRFDIPEGTAQIYAGDDCAI 1256

Query: 289  AQVCPEKPSFALLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELA 110
            AQVCPEKPSF+LLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELA
Sbjct: 1257 AQVCPEKPSFSLLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELA 1316

Query: 109  KAQKKAGVKDAISNVIANYSLDAKLAYSLGDDLQDL 2
            KAQKKAGVKDAI+NV+ANYSLDAKLAYSLGDDLQDL
Sbjct: 1317 KAQKKAGVKDAITNVVANYSLDAKLAYSLGDDLQDL 1352


>ref|NP_620836.1| replicase [Plantago asiatica mosaic virus]
            gi|1173174|sp|Q07518.1|RDRP_P1AMV RecName: Full=RNA
            replication protein; AltName: Full=156 kDa protein;
            AltName: Full=ORF1 protein; Includes: RecName:
            Full=RNA-directed RNA polymerase; Includes: RecName:
            Full=Helicase gi|311645|emb|CAA79761.1| 156K-protein
            [Plantago asiatica mosaic virus]
          Length = 1385

 Score =  775 bits (2001), Expect = 0.0
 Identities = 373/396 (94%), Positives = 387/396 (97%)
 Frame = -3

Query: 1189 FEREIFTEAHGHTNCVQGDDPTTQLFSHQQAKDEALLWETIKARLTISTPEANLEEFRAK 1010
            F+REIFT   GHTNCVQ DDPTTQLFSHQQAKDEALLWE I+ARL ISTPEAN+EEFRAK
Sbjct: 962  FDREIFTSDRGHTNCVQTDDPTTQLFSHQQAKDEALLWEMIRARLKISTPEANIEEFRAK 1021

Query: 1009 KDLGDILWANYHKAMKLPKEQPEFSEDLWTRCAEEVQNTYLKKSISQIKGGERRQSPDFH 830
            KDLGDILW NYH+AM LPKEQP+FSEDLW RCAEEVQNTYLKK+++Q+KGGERRQSPDFH
Sbjct: 1022 KDLGDILWVNYHRAMGLPKEQPDFSEDLWNRCAEEVQNTYLKKTMAQLKGGERRQSPDFH 1081

Query: 829  EHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDALSPNNI 650
            EHQILIFLKSQWVKKMEKLGAK+IKPGQTIASFQQHAVMLYGTMARYMRRFRDALSPNNI
Sbjct: 1082 EHQILIFLKSQWVKKMEKLGAKEIKPGQTIASFQQHAVMLYGTMARYMRRFRDALSPNNI 1141

Query: 649  MINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIE 470
            MINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIE
Sbjct: 1142 MINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIE 1201

Query: 469  GYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTECNIAYTHTRFEIPEGTAQIYAGDDCAI 290
            GYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTECNIAYTHTRF+IPEGTAQIYAGDDCAI
Sbjct: 1202 GYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTECNIAYTHTRFDIPEGTAQIYAGDDCAI 1261

Query: 289  AQVCPEKPSFALLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELA 110
            AQVCPEKPSFALLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELA
Sbjct: 1262 AQVCPEKPSFALLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELA 1321

Query: 109  KAQKKAGVKDAISNVIANYSLDAKLAYSLGDDLQDL 2
            KAQKKAGV+DAI+NV+ANYSLDAKLAYSLGDDLQDL
Sbjct: 1322 KAQKKAGVRDAITNVVANYSLDAKLAYSLGDDLQDL 1357


>dbj|BAG12148.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
          Length = 1380

 Score =  774 bits (1999), Expect = 0.0
 Identities = 373/396 (94%), Positives = 384/396 (96%)
 Frame = -3

Query: 1189 FEREIFTEAHGHTNCVQGDDPTTQLFSHQQAKDEALLWETIKARLTISTPEANLEEFRAK 1010
            F+REIF  AHGHTNCVQ DDPTTQLFSHQQAKDEALLWETI ARLT+S PEANL EFRAK
Sbjct: 957  FDREIFNPAHGHTNCVQTDDPTTQLFSHQQAKDEALLWETINARLTLSNPEANLAEFRAK 1016

Query: 1009 KDLGDILWANYHKAMKLPKEQPEFSEDLWTRCAEEVQNTYLKKSISQIKGGERRQSPDFH 830
            KDLGDILW NY KAMKLP EQP+FSEDLW RCAEEVQNTYLKKS+SQIKGGERRQSPDFH
Sbjct: 1017 KDLGDILWENYRKAMKLPSEQPDFSEDLWIRCAEEVQNTYLKKSVSQIKGGERRQSPDFH 1076

Query: 829  EHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDALSPNNI 650
            EH ILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDAL PNNI
Sbjct: 1077 EHHILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDALRPNNI 1136

Query: 649  MINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIE 470
            MINCE+TPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIE
Sbjct: 1137 MINCERTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIE 1196

Query: 469  GYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTECNIAYTHTRFEIPEGTAQIYAGDDCAI 290
            GYLDIKLSPKIF+GTL+IMRLTGEGPTFDANTECNIAYTHTRF+IPEGTAQIYAGDDCAI
Sbjct: 1197 GYLDIKLSPKIFMGTLTIMRLTGEGPTFDANTECNIAYTHTRFDIPEGTAQIYAGDDCAI 1256

Query: 289  AQVCPEKPSFALLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELA 110
            AQVCPEKPSF+LLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELA
Sbjct: 1257 AQVCPEKPSFSLLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELA 1316

Query: 109  KAQKKAGVKDAISNVIANYSLDAKLAYSLGDDLQDL 2
            KAQKKAGVKDAI+NV+ANYSLDAKLAYSLGDDLQDL
Sbjct: 1317 KAQKKAGVKDAITNVVANYSLDAKLAYSLGDDLQDL 1352


>dbj|BAG12133.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
          Length = 1380

 Score =  774 bits (1998), Expect = 0.0
 Identities = 374/396 (94%), Positives = 384/396 (96%)
 Frame = -3

Query: 1189 FEREIFTEAHGHTNCVQGDDPTTQLFSHQQAKDEALLWETIKARLTISTPEANLEEFRAK 1010
            F+REIF  AHGHTNCVQ DDPTTQLFSHQQAKDEALLWETI ARLT+S PEANL EFRAK
Sbjct: 957  FDREIFNPAHGHTNCVQTDDPTTQLFSHQQAKDEALLWETINARLTLSNPEANLAEFRAK 1016

Query: 1009 KDLGDILWANYHKAMKLPKEQPEFSEDLWTRCAEEVQNTYLKKSISQIKGGERRQSPDFH 830
            KDLGDILW NY KAMKLP EQP+FSEDLW RCAEEVQNTYLKKS+SQIKGGERRQSPDFH
Sbjct: 1017 KDLGDILWENYRKAMKLPSEQPDFSEDLWIRCAEEVQNTYLKKSVSQIKGGERRQSPDFH 1076

Query: 829  EHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDALSPNNI 650
            EHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDAL PNNI
Sbjct: 1077 EHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDALRPNNI 1136

Query: 649  MINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIE 470
            MINCEKTPQDLSRWVLN WDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIE
Sbjct: 1137 MINCEKTPQDLSRWVLNCWDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIE 1196

Query: 469  GYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTECNIAYTHTRFEIPEGTAQIYAGDDCAI 290
            GYLDIKLSPKIF+GTL+IMRLTGEGPTFDANTECNIAYTHTRF+IPEGTAQIYAGDDCAI
Sbjct: 1197 GYLDIKLSPKIFMGTLTIMRLTGEGPTFDANTECNIAYTHTRFDIPEGTAQIYAGDDCAI 1256

Query: 289  AQVCPEKPSFALLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELA 110
            AQVCPEKPSF+LLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELA
Sbjct: 1257 AQVCPEKPSFSLLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELA 1316

Query: 109  KAQKKAGVKDAISNVIANYSLDAKLAYSLGDDLQDL 2
            KAQKKAGVKDAI+NV+ANYSLDAKLAYSLGDDLQDL
Sbjct: 1317 KAQKKAGVKDAITNVVANYSLDAKLAYSLGDDLQDL 1352


>dbj|BAG12128.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
          Length = 1380

 Score =  774 bits (1998), Expect = 0.0
 Identities = 374/396 (94%), Positives = 384/396 (96%)
 Frame = -3

Query: 1189 FEREIFTEAHGHTNCVQGDDPTTQLFSHQQAKDEALLWETIKARLTISTPEANLEEFRAK 1010
            F+REIF  AHGHTNCVQ DDPTTQLFSHQQAKDEALLWETI ARLT+S PEANL EFRAK
Sbjct: 957  FDREIFNPAHGHTNCVQTDDPTTQLFSHQQAKDEALLWETINARLTLSNPEANLAEFRAK 1016

Query: 1009 KDLGDILWANYHKAMKLPKEQPEFSEDLWTRCAEEVQNTYLKKSISQIKGGERRQSPDFH 830
            KDLGDILW NY KAMKLP EQP+FSEDLW RCAEEVQNTYLKKS+SQIKGGERRQSPDFH
Sbjct: 1017 KDLGDILWENYRKAMKLPSEQPDFSEDLWIRCAEEVQNTYLKKSVSQIKGGERRQSPDFH 1076

Query: 829  EHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDALSPNNI 650
            EHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDAL PNNI
Sbjct: 1077 EHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDALRPNNI 1136

Query: 649  MINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIE 470
            MINCEKTPQDLSRWVLN WDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIE
Sbjct: 1137 MINCEKTPQDLSRWVLNCWDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIE 1196

Query: 469  GYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTECNIAYTHTRFEIPEGTAQIYAGDDCAI 290
            GYLDIKLSPKIF+GTL+IMRLTGEGPTFDANTECNIAYTHTRF+IPEGTAQIYAGDDCAI
Sbjct: 1197 GYLDIKLSPKIFMGTLTIMRLTGEGPTFDANTECNIAYTHTRFDIPEGTAQIYAGDDCAI 1256

Query: 289  AQVCPEKPSFALLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELA 110
            AQVCPEKPSF+LLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELA
Sbjct: 1257 AQVCPEKPSFSLLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELA 1316

Query: 109  KAQKKAGVKDAISNVIANYSLDAKLAYSLGDDLQDL 2
            KAQKKAGVKDAI+NV+ANYSLDAKLAYSLGDDLQDL
Sbjct: 1317 KAQKKAGVKDAITNVVANYSLDAKLAYSLGDDLQDL 1352


>dbj|BAG12123.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
          Length = 1380

 Score =  774 bits (1998), Expect = 0.0
 Identities = 374/396 (94%), Positives = 384/396 (96%)
 Frame = -3

Query: 1189 FEREIFTEAHGHTNCVQGDDPTTQLFSHQQAKDEALLWETIKARLTISTPEANLEEFRAK 1010
            F+REIF  AHGHTNCVQ DDPTTQLFSHQQAKDEALLWETI ARLT+S PEANL EFRAK
Sbjct: 957  FDREIFNPAHGHTNCVQTDDPTTQLFSHQQAKDEALLWETINARLTLSNPEANLAEFRAK 1016

Query: 1009 KDLGDILWANYHKAMKLPKEQPEFSEDLWTRCAEEVQNTYLKKSISQIKGGERRQSPDFH 830
            KDLGDILW NY KAMKLP EQP+FSEDLW RCAEEVQNTYLKKS+SQIKGGERRQSPDFH
Sbjct: 1017 KDLGDILWENYRKAMKLPSEQPDFSEDLWIRCAEEVQNTYLKKSVSQIKGGERRQSPDFH 1076

Query: 829  EHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDALSPNNI 650
            EHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDAL PNNI
Sbjct: 1077 EHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDALRPNNI 1136

Query: 649  MINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIE 470
            MINCEKTPQDLSRWVLN WDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIE
Sbjct: 1137 MINCEKTPQDLSRWVLNCWDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIE 1196

Query: 469  GYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTECNIAYTHTRFEIPEGTAQIYAGDDCAI 290
            GYLDIKLSPKIF+GTL+IMRLTGEGPTFDANTECNIAYTHTRF+IPEGTAQIYAGDDCAI
Sbjct: 1197 GYLDIKLSPKIFMGTLTIMRLTGEGPTFDANTECNIAYTHTRFDIPEGTAQIYAGDDCAI 1256

Query: 289  AQVCPEKPSFALLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELA 110
            AQVCPEKPSF+LLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELA
Sbjct: 1257 AQVCPEKPSFSLLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELA 1316

Query: 109  KAQKKAGVKDAISNVIANYSLDAKLAYSLGDDLQDL 2
            KAQKKAGVKDAI+NV+ANYSLDAKLAYSLGDDLQDL
Sbjct: 1317 KAQKKAGVKDAITNVVANYSLDAKLAYSLGDDLQDL 1352


>dbj|BAG12138.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
          Length = 1380

 Score =  773 bits (1996), Expect = 0.0
 Identities = 373/396 (94%), Positives = 383/396 (96%)
 Frame = -3

Query: 1189 FEREIFTEAHGHTNCVQGDDPTTQLFSHQQAKDEALLWETIKARLTISTPEANLEEFRAK 1010
            F+REIF  AHGHTNCVQ DDPTTQLFSHQQAKDEALLWETI ARLT+S PEANL EFRAK
Sbjct: 957  FDREIFNPAHGHTNCVQTDDPTTQLFSHQQAKDEALLWETINARLTLSNPEANLAEFRAK 1016

Query: 1009 KDLGDILWANYHKAMKLPKEQPEFSEDLWTRCAEEVQNTYLKKSISQIKGGERRQSPDFH 830
            KDLGDILW NY KAMKLP EQP+FSEDLW RCAEEVQNTYLKKS+SQIKGGERRQSPDFH
Sbjct: 1017 KDLGDILWENYRKAMKLPSEQPDFSEDLWIRCAEEVQNTYLKKSVSQIKGGERRQSPDFH 1076

Query: 829  EHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDALSPNNI 650
            EHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDAL PNNI
Sbjct: 1077 EHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDALRPNNI 1136

Query: 649  MINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIE 470
            MINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIE
Sbjct: 1137 MINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIE 1196

Query: 469  GYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTECNIAYTHTRFEIPEGTAQIYAGDDCAI 290
            GYLDIKLSPKIF+GTL+IMRLTGEGP FDANTECNIAYTHTRF+IPEGTAQIYAGDDCAI
Sbjct: 1197 GYLDIKLSPKIFMGTLTIMRLTGEGPAFDANTECNIAYTHTRFDIPEGTAQIYAGDDCAI 1256

Query: 289  AQVCPEKPSFALLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELA 110
            AQVCPEKPSF+LLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELA
Sbjct: 1257 AQVCPEKPSFSLLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELA 1316

Query: 109  KAQKKAGVKDAISNVIANYSLDAKLAYSLGDDLQDL 2
            KAQKKAGVKDAI+NV+ NYSLDAKLAYSLGDDLQDL
Sbjct: 1317 KAQKKAGVKDAITNVVDNYSLDAKLAYSLGDDLQDL 1352


>gb|AGW45386.1| RNA-dependent RNA polymerase, partial [Plantago asiatica mosaic
            virus]
          Length = 711

 Score =  772 bits (1994), Expect = 0.0
 Identities = 371/396 (93%), Positives = 387/396 (97%)
 Frame = -3

Query: 1189 FEREIFTEAHGHTNCVQGDDPTTQLFSHQQAKDEALLWETIKARLTISTPEANLEEFRAK 1010
            F+REIF +AHGHTNCVQ D+PTTQLF+HQQAKDEALLWETI ARLTIS+PEANL EFRAK
Sbjct: 288  FDREIFNQAHGHTNCVQTDNPTTQLFAHQQAKDEALLWETINARLTISSPEANLAEFRAK 347

Query: 1009 KDLGDILWANYHKAMKLPKEQPEFSEDLWTRCAEEVQNTYLKKSISQIKGGERRQSPDFH 830
            KDLGDILW NY KAMKLP EQP+FSEDLWTRCAEEVQNTYLKKS++QIKGG+RRQSPDFH
Sbjct: 348  KDLGDILWENYRKAMKLPNEQPDFSEDLWTRCAEEVQNTYLKKSVAQIKGGDRRQSPDFH 407

Query: 829  EHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDALSPNNI 650
            EHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDAL PNNI
Sbjct: 408  EHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDALRPNNI 467

Query: 649  MINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIE 470
            MINCEKTPQDLSRWVLN+WDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIE
Sbjct: 468  MINCEKTPQDLSRWVLNHWDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIE 527

Query: 469  GYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTECNIAYTHTRFEIPEGTAQIYAGDDCAI 290
            GYLDIKLSPKIFLGTL+IMRLTGEGPTFDANTECNIAYTHTRF+IPEG AQIYAGDDCAI
Sbjct: 528  GYLDIKLSPKIFLGTLTIMRLTGEGPTFDANTECNIAYTHTRFDIPEGAAQIYAGDDCAI 587

Query: 289  AQVCPEKPSFALLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELA 110
            +QVCPEKPSF+LLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELA
Sbjct: 588  SQVCPEKPSFSLLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELA 647

Query: 109  KAQKKAGVKDAISNVIANYSLDAKLAYSLGDDLQDL 2
            KAQKKAGVKDAI+NV+ANYSLDAKLAYSLGDDLQDL
Sbjct: 648  KAQKKAGVKDAITNVVANYSLDAKLAYSLGDDLQDL 683


>ref|NP_702988.1| RNA-dependent RNA polymerase [Tulip virus X]
            gi|23491554|dbj|BAC16785.1| RNA-dependent RNA polymerase
            [Tulip virus X]
          Length = 1361

 Score =  690 bits (1781), Expect = 0.0
 Identities = 332/396 (83%), Positives = 359/396 (90%)
 Frame = -3

Query: 1189 FEREIFTEAHGHTNCVQGDDPTTQLFSHQQAKDEALLWETIKARLTISTPEANLEEFRAK 1010
            ++REI    HG TNCVQ +D T QLFSHQQAKDEALLWETI ARL +STPEANL EF AK
Sbjct: 938  YDREILNTNHGFTNCVQTEDLTVQLFSHQQAKDEALLWETIDARLRLSTPEANLAEFHAK 997

Query: 1009 KDLGDILWANYHKAMKLPKEQPEFSEDLWTRCAEEVQNTYLKKSISQIKGGERRQSPDFH 830
            KDLGD+LW NYH+AMKLPKEQP+FS +LW RCA EVQ TYL KS+ QIKGGERRQSPDF 
Sbjct: 998  KDLGDVLWENYHRAMKLPKEQPDFSPELWERCAAEVQQTYLSKSLQQIKGGERRQSPDFP 1057

Query: 829  EHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDALSPNNI 650
            E++ILIFLKSQWVKKMEKLGA KIKPGQTIASFQQ AVMLYGTMARYMRR+RDAL PNNI
Sbjct: 1058 ENKILIFLKSQWVKKMEKLGAPKIKPGQTIASFQQAAVMLYGTMARYMRRYRDALGPNNI 1117

Query: 649  MINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIE 470
            MINCE+TP DLSRWV N+WDF+KP YANDFTAFDQSQDGAMLQFEILKAK+FNLPEWVIE
Sbjct: 1118 MINCERTPADLSRWVRNHWDFTKPXYANDFTAFDQSQDGAMLQFEILKAKFFNLPEWVIE 1177

Query: 469  GYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTECNIAYTHTRFEIPEGTAQIYAGDDCAI 290
            GYLDIKL+P+IF GTL+IMRLTGEGPTFDANTECNIAYTHTRF IP+  AQ+YAGDDCAI
Sbjct: 1178 GYLDIKLTPQIFTGTLAIMRLTGEGPTFDANTECNIAYTHTRFHIPDHVAQLYAGDDCAI 1237

Query: 289  AQVCPEKPSFALLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELA 110
            A+VC EKPSFALLKNRIALQAKPAY PQ RG WAEFCGYLITPKGLIKDPLKLH+SLELA
Sbjct: 1238 AEVCQEKPSFALLKNRIALQAKPAYAPQTRGAWAEFCGYLITPKGLIKDPLKLHSSLELA 1297

Query: 109  KAQKKAGVKDAISNVIANYSLDAKLAYSLGDDLQDL 2
            KA +K G KDAI+NV+ANYSLDAK+AYSLGDDLQDL
Sbjct: 1298 KALRKQGRKDAITNVVANYSLDAKMAYSLGDDLQDL 1333


>gb|ADE10202.1| viral replicase [Hydrangea ringspot virus]
          Length = 1386

 Score =  587 bits (1512), Expect = e-165
 Identities = 289/396 (72%), Positives = 322/396 (81%)
 Frame = -3

Query: 1189 FEREIFTEAHGHTNCVQGDDPTTQLFSHQQAKDEALLWETIKARLTISTPEANLEEFRAK 1010
            FEREIFTE  GHTNCVQ  +P  QLF HQQAKDEALLWETIKARLTIS+PEAN EEF  K
Sbjct: 964  FEREIFTEDRGHTNCVQTQNPLVQLFPHQQAKDEALLWETIKARLTISSPEANWEEFYRK 1023

Query: 1009 KDLGDILWANYHKAMKLPKEQPEFSEDLWTRCAEEVQNTYLKKSISQIKGGERRQSPDFH 830
            KD+GDILW +Y KAM LP+E   FSEDLW   A EVQNTYL K ++ +K GERRQSPDF 
Sbjct: 1024 KDIGDILWLHYKKAMTLPEEPLPFSEDLWRLSAAEVQNTYLSKPMNMLKNGERRQSPDFE 1083

Query: 829  EHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDALSPNNI 650
            +HQIL+FLKSQWVKKMEKLG  KIK GQTIASFQQHAVMLYGTMARYMRRFR+ L PN+I
Sbjct: 1084 KHQILLFLKSQWVKKMEKLGGPKIKAGQTIASFQQHAVMLYGTMARYMRRFREVLGPNHI 1143

Query: 649  MINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIE 470
             INCE TP+DLSR++ NYWDF   SYANDFTAFDQSQDGAMLQFEILKAK+FN+PE +I+
Sbjct: 1144 KINCEATPKDLSRFIQNYWDFKPASYANDFTAFDQSQDGAMLQFEILKAKHFNIPEEIIQ 1203

Query: 469  GYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTECNIAYTHTRFEIPEGTAQIYAGDDCAI 290
            GYLDIKL+ KIFLG L IMRLTGEGPTFDANTECNIAYTHTRF+IP GTAQ+YAGDD AI
Sbjct: 1204 GYLDIKLNAKIFLGVLGIMRLTGEGPTFDANTECNIAYTHTRFDIPPGTAQLYAGDDSAI 1263

Query: 289  AQVCPEKPSFALLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELA 110
            A V PE+PSF L+   +AL+AKP Y PQ  G WAEFCGYLITPKGLIKDP KL ASL+L 
Sbjct: 1264 ACVPPERPSFKLIAKSLALEAKPVYAPQVAGAWAEFCGYLITPKGLIKDPAKLFASLKLL 1323

Query: 109  KAQKKAGVKDAISNVIANYSLDAKLAYSLGDDLQDL 2
            +A   +G K  +     NY  D  LAY+L D L ++
Sbjct: 1324 QA--TSGSKKELVEAAGNYERDVGLAYALKDSLYEI 1357


>ref|YP_224084.1| viral replicase [Hydrangea ringspot virus] gi|56792005|gb|AAW30448.1|
            viral replicase [Hydrangea ringspot virus]
          Length = 1386

 Score =  583 bits (1503), Expect = e-164
 Identities = 288/396 (72%), Positives = 321/396 (81%)
 Frame = -3

Query: 1189 FEREIFTEAHGHTNCVQGDDPTTQLFSHQQAKDEALLWETIKARLTISTPEANLEEFRAK 1010
            FEREIFTE  GHTNCVQ  +P  QLF HQQAKDEALLWETIKARLTIS+PEAN EEF  K
Sbjct: 964  FEREIFTEDRGHTNCVQTQNPLVQLFPHQQAKDEALLWETIKARLTISSPEANWEEFYKK 1023

Query: 1009 KDLGDILWANYHKAMKLPKEQPEFSEDLWTRCAEEVQNTYLKKSISQIKGGERRQSPDFH 830
            KD+GDILW +Y KAM LP+E   FSEDLW   A EVQNTYL K ++ +K GERRQSPDF 
Sbjct: 1024 KDIGDILWLHYKKAMTLPEEPLPFSEDLWRLSAAEVQNTYLSKPMNMLKNGERRQSPDFE 1083

Query: 829  EHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDALSPNNI 650
            +HQIL+FLKSQWVKKMEKLG  KIK GQTIASFQQHAVMLYGTMARYMRRFR+AL PN+I
Sbjct: 1084 KHQILLFLKSQWVKKMEKLGGPKIKAGQTIASFQQHAVMLYGTMARYMRRFREALGPNHI 1143

Query: 649  MINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIE 470
             INCE TP+DLSR++ NYWDF   SYANDFTAFDQSQD AMLQFEILKAK+FN+P  +I+
Sbjct: 1144 KINCEATPKDLSRFIQNYWDFKPASYANDFTAFDQSQDAAMLQFEILKAKHFNIPGEIIQ 1203

Query: 469  GYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTECNIAYTHTRFEIPEGTAQIYAGDDCAI 290
            GYLDIKL+ KIFLG L IMRLTGEGPTFDANTECNIAYTHTRF+IP GTAQ+YAGDD AI
Sbjct: 1204 GYLDIKLNAKIFLGVLGIMRLTGEGPTFDANTECNIAYTHTRFDIPPGTAQLYAGDDSAI 1263

Query: 289  AQVCPEKPSFALLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELA 110
            A V PE+PSF L+   +AL+AKP Y PQ  G WAEFCGYLITPKGLIKDP KL ASL+L 
Sbjct: 1264 ACVPPERPSFKLIAKSLALEAKPVYAPQVAGAWAEFCGYLITPKGLIKDPAKLFASLKLL 1323

Query: 109  KAQKKAGVKDAISNVIANYSLDAKLAYSLGDDLQDL 2
            +A   +G K  +     NY  D  LAY+L D L ++
Sbjct: 1324 QA--TSGSKKELVEAAGNYERDVGLAYALKDSLYEI 1357


>ref|NP_042695.1| RNA-dependent RNA polymerase [Cassava common mosaic virus]
            gi|773405|gb|AAC54775.1| ORF 1; putative RNA dependent
            RNA polymerase [Cassava common mosaic virus]
            gi|1587823|prf||2207297A ORF 1
          Length = 1449

 Score =  539 bits (1389), Expect = e-151
 Identities = 275/400 (68%), Positives = 307/400 (76%), Gaps = 5/400 (1%)
 Frame = -3

Query: 1186 EREIFTEAHGHTNCVQGDDPTTQLFSHQQAKDEALLWETIKARLTISTPEANLEEFRAKK 1007
            EREIF E+HGHTNCVQ D+   Q  SHQQAKDEALLWETIKARL IS  + N  EF  KK
Sbjct: 1033 EREIFNESHGHTNCVQTDNKIIQTLSHQQAKDEALLWETIKARLVISHKQHNWTEFVKKK 1092

Query: 1006 DLGDILWANYHKAMKLPKEQPEFSEDLWTRCAEEVQNTYLKKSISQIKGGERRQSPDFHE 827
            D+GDILW NY +AM LP++   F E+LW   A E+Q+TYL KS   +K GERRQSPDF E
Sbjct: 1093 DIGDILWLNYKRAMHLPEDPIPF-EELWELAAREIQHTYLSKSTQMLKNGERRQSPDFGE 1151

Query: 826  HQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDALSPNNIM 647
              ILIFLKSQWVKKMEKLGA KIKPGQTIASFQQ AVMLYGTMARYMRR RD   P +IM
Sbjct: 1152 KDILIFLKSQWVKKMEKLGAPKIKPGQTIASFQQSAVMLYGTMARYMRRIRDIYMPEHIM 1211

Query: 646  INCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEG 467
            INCE+TP DLS W LNYW+F KPSYANDFTAFDQSQDGAMLQFEILKAK+ N+PEWV+EG
Sbjct: 1212 INCERTPTDLSYWALNYWNFDKPSYANDFTAFDQSQDGAMLQFEILKAKHHNIPEWVLEG 1271

Query: 466  YLDIKLSPKIFLGTLSIMRLTGEGPTFDANTECNIAYTHTRFEIPEGTAQIYAGDDCAIA 287
            YLDIKL  +IFLGTLSIMRLTGE  TFDANTECNIAYTHTRF+IPEG AQ     D A+ 
Sbjct: 1272 YLDIKLDSRIFLGTLSIMRLTGEYQTFDANTECNIAYTHTRFDIPEGVAQ-----DSAMD 1326

Query: 286  QVCPEKPSFALLKNRIALQ-----AKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHAS 122
              C EKPSF L+++ ++L+      KP    Q  G+WAEFCGYLITPKGLIKDPLKL AS
Sbjct: 1327 ATCLEKPSFKLIESELSLKLYAGDCKPCLKAQIPGEWAEFCGYLITPKGLIKDPLKLAAS 1386

Query: 121  LELAKAQKKAGVKDAISNVIANYSLDAKLAYSLGDDLQDL 2
              LAK + K      + N + NY+ D KLAY LGDDL +L
Sbjct: 1387 FRLAKERGKR----ELDNCLENYARDMKLAYDLGDDLLEL 1422


>ref|YP_002647027.1| replicase [Allium virus X] gi|224579235|gb|ACN58194.1| replicase
            [Allium virus X]
          Length = 1701

 Score =  529 bits (1363), Expect = e-148
 Identities = 257/395 (65%), Positives = 309/395 (78%)
 Frame = -3

Query: 1186 EREIFTEAHGHTNCVQGDDPTTQLFSHQQAKDEALLWETIKARLTISTPEANLEEFRAKK 1007
            +REI    HGHTNCVQ +D   QLFSHQQAKD+ALLW TI+ARL IS P+AN+ EF AKK
Sbjct: 1286 DREILRPDHGHTNCVQTEDAVIQLFSHQQAKDQALLWATIEARLKISNPKANIAEFNAKK 1345

Query: 1006 DLGDILWANYHKAMKLPKEQPEFSEDLWTRCAEEVQNTYLKKSISQIKGGERRQSPDFHE 827
            ++GD+L+ +YH+AMKLP +   F EDLW  CA+EVQ TYL K I+ +K GE RQSPDF +
Sbjct: 1346 EIGDVLFEHYHQAMKLPDKPIPFMEDLWVACAQEVQGTYLSKPINMLKNGEYRQSPDFDK 1405

Query: 826  HQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDALSPNNIM 647
            + I +FLKSQWVKKMEKLGA KIKPGQTIASFQQ AVMLYGTMARYMRR R+A  P  IM
Sbjct: 1406 NTIALFLKSQWVKKMEKLGAPKIKPGQTIASFQQSAVMLYGTMARYMRRMREAFQPPEIM 1465

Query: 646  INCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEG 467
            INCEK PQ LS W+ NYW F+  +YANDFT FDQSQDGAMLQFEILKAK+ ++PEWV+EG
Sbjct: 1466 INCEKDPQTLSHWIQNYWKFNSYAYANDFTQFDQSQDGAMLQFEILKAKHHSIPEWVLEG 1525

Query: 466  YLDIKLSPKIFLGTLSIMRLTGEGPTFDANTECNIAYTHTRFEIPEGTAQIYAGDDCAIA 287
            YLDIK + K+F G LSIMRLTGEGPTFDANTECNIAYTH RF++P+GTAQ+YAGDD A++
Sbjct: 1526 YLDIKTNAKVFSGVLSIMRLTGEGPTFDANTECNIAYTHLRFDVPKGTAQLYAGDDSALS 1585

Query: 286  QVCPEKPSFALLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAK 107
             + PE+PSFA  K ++ L +KPA   Q+RG WAEFCGYLITP G++KDP KL A++ LA+
Sbjct: 1586 CLPPERPSFADFKQQLTLTSKPALFAQKRGFWAEFCGYLITPLGIMKDPAKLAATVVLAQ 1645

Query: 106  AQKKAGVKDAISNVIANYSLDAKLAYSLGDDLQDL 2
             Q K      +     +++LD KLAY   D L ++
Sbjct: 1646 KQNK------LHECWRSHALDLKLAYVHRDALTEV 1674


>gb|AFM77886.1| replicase [Hosta virus X]
          Length = 1473

 Score =  524 bits (1349), Expect = e-146
 Identities = 255/394 (64%), Positives = 305/394 (77%)
 Frame = -3

Query: 1183 REIFTEAHGHTNCVQGDDPTTQLFSHQQAKDEALLWETIKARLTISTPEANLEEFRAKKD 1004
            REI+ + HGHTNCVQ D+P  Q+F+HQQAKDEAL WETI+ARL I+T EAN++E   K+D
Sbjct: 1039 REIYNKTHGHTNCVQTDEPLVQMFAHQQAKDEALFWETIEARLRITTSEANVQELNEKRD 1098

Query: 1003 LGDILWANYHKAMKLPKEQPEFSEDLWTRCAEEVQNTYLKKSISQIKGGERRQSPDFHEH 824
            +GD+L+  YHKAM LPK+   F  DLW  CA+EVQ TYL K I+ IK GE+RQ PDF ++
Sbjct: 1099 IGDLLFHAYHKAMGLPKDPIPFENDLWETCAQEVQQTYLSKPINLIKNGEKRQGPDFDKN 1158

Query: 823  QILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDALSPNNIMI 644
             I++FLKSQWVKKMEKLGA  IKPGQTIASF Q  VMLYGTMARYMRR RD   P +I+I
Sbjct: 1159 AIMLFLKSQWVKKMEKLGAPTIKPGQTIASFHQITVMLYGTMARYMRRIRDRFCPKHILI 1218

Query: 643  NCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEGY 464
            NCEKTP  +S +V   WDFS  +YANDFTAFDQSQDGAMLQFEI+KAK+ N+PE +I GY
Sbjct: 1219 NCEKTPTQISDFVKAQWDFSDFAYANDFTAFDQSQDGAMLQFEIIKAKFHNIPEDIILGY 1278

Query: 463  LDIKLSPKIFLGTLSIMRLTGEGPTFDANTECNIAYTHTRFEIPEGTAQIYAGDDCAIAQ 284
            +DIK + KIFLGTL+IMRLTGEGPTFDANTECNIAYTH RF +PE  AQ+YAGDD A+++
Sbjct: 1279 MDIKTNAKIFLGTLAIMRLTGEGPTFDANTECNIAYTHLRFNVPENVAQVYAGDDSALSK 1338

Query: 283  VCPEKPSFALLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKA 104
            VCPEK SF    +R+ L++KP   PQ +G WAEFCG LITP+G+IKDP+KLHAS  LA  
Sbjct: 1339 VCPEKDSFKQFADRLTLKSKPQVFPQTQGAWAEFCGLLITPRGIIKDPVKLHASWVLA-- 1396

Query: 103  QKKAGVKDAISNVIANYSLDAKLAYSLGDDLQDL 2
              K G    I   + +Y  D KL+Y LGD LQ+L
Sbjct: 1397 -TKLGTLQQI-KCVNSYGEDLKLSYDLGDHLQEL 1428


>ref|YP_002308464.1| replicase [Hosta virus X] gi|58415284|emb|CAF04078.1| replicase
            [Hosta virus X]
          Length = 1507

 Score =  524 bits (1349), Expect = e-146
 Identities = 255/394 (64%), Positives = 305/394 (77%)
 Frame = -3

Query: 1183 REIFTEAHGHTNCVQGDDPTTQLFSHQQAKDEALLWETIKARLTISTPEANLEEFRAKKD 1004
            REI+ + HGHTNCVQ D+P  Q+F+HQQAKDEAL WETI+ARL I+T EAN++E   K+D
Sbjct: 1073 REIYNKTHGHTNCVQTDEPLVQMFAHQQAKDEALFWETIEARLRITTSEANVQELNEKRD 1132

Query: 1003 LGDILWANYHKAMKLPKEQPEFSEDLWTRCAEEVQNTYLKKSISQIKGGERRQSPDFHEH 824
            +GD+L+  YHKAM LPK+   F  DLW  CA+EVQ TYL K I+ IK GE+RQ PDF ++
Sbjct: 1133 IGDLLFHAYHKAMGLPKDPIPFENDLWETCAQEVQQTYLSKPINLIKNGEKRQGPDFDKN 1192

Query: 823  QILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDALSPNNIMI 644
             I++FLKSQWVKKMEKLGA  IKPGQTIASF Q  VMLYGTMARYMRR RD   P +I+I
Sbjct: 1193 AIMLFLKSQWVKKMEKLGAPTIKPGQTIASFHQITVMLYGTMARYMRRIRDRFCPKHILI 1252

Query: 643  NCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEGY 464
            NCEKTP  +S +V   WDFS  +YANDFTAFDQSQDGAMLQFEI+KAK+ N+PE +I GY
Sbjct: 1253 NCEKTPTQISDFVKAQWDFSDFAYANDFTAFDQSQDGAMLQFEIIKAKFHNIPEDIILGY 1312

Query: 463  LDIKLSPKIFLGTLSIMRLTGEGPTFDANTECNIAYTHTRFEIPEGTAQIYAGDDCAIAQ 284
            +DIK + KIFLGTL+IMRLTGEGPTFDANTECNIAYTH RF +PE  AQ+YAGDD A+++
Sbjct: 1313 MDIKTNAKIFLGTLAIMRLTGEGPTFDANTECNIAYTHLRFNVPENVAQVYAGDDSALSK 1372

Query: 283  VCPEKPSFALLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKA 104
            VCPEK SF    +R+ L++KP   PQ +G WAEFCG LITP+G+IKDP+KLHAS  LA  
Sbjct: 1373 VCPEKDSFKQFADRLTLKSKPQVFPQTQGAWAEFCGLLITPRGIIKDPVKLHASWVLA-- 1430

Query: 103  QKKAGVKDAISNVIANYSLDAKLAYSLGDDLQDL 2
              K G    I   + +Y  D KL+Y LGD LQ+L
Sbjct: 1431 -TKLGTLQQI-KCVNSYGEDLKLSYDLGDHLQEL 1462


>ref|NP_077079.1| replicase [Clover yellow mosaic virus]
          Length = 1670

 Score =  515 bits (1327), Expect = e-143
 Identities = 247/395 (62%), Positives = 307/395 (77%)
 Frame = -3

Query: 1186 EREIFTEAHGHTNCVQGDDPTTQLFSHQQAKDEALLWETIKARLTISTPEANLEEFRAKK 1007
            ERE+++  HG++NCVQ DDP  QLFSHQQAKD+ LLW TI+ARL IS P+AN+EEFR KK
Sbjct: 1254 ERELYSSDHGYSNCVQTDDPVVQLFSHQQAKDQTLLWATIEARLKISNPKANMEEFRMKK 1313

Query: 1006 DLGDILWANYHKAMKLPKEQPEFSEDLWTRCAEEVQNTYLKKSISQIKGGERRQSPDFHE 827
            ++GD+LW NY +AMKLP +  EFS +LW  CAEEVQ TYL K ++ IK GE RQSPDF +
Sbjct: 1314 NVGDVLWLNYKRAMKLPDKPIEFSHELWHACAEEVQKTYLSKPLNMIKNGENRQSPDFDK 1373

Query: 826  HQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDALSPNNIM 647
            H I +FLKSQWVKK+EKLGA KIKPGQTIASFQQ  VMLYGTMARYMRR R A  P NI 
Sbjct: 1374 HTISLFLKSQWVKKLEKLGAPKIKPGQTIASFQQATVMLYGTMARYMRRIRQAFQPPNIQ 1433

Query: 646  INCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEG 467
            +NCE+TPQ L+ ++ + W F +P+YANDFT FDQSQDGAMLQFE+LKAK+ N+PE +I+G
Sbjct: 1434 LNCEQTPQQLTTFIKDQWSFDQPAYANDFTQFDQSQDGAMLQFEVLKAKHHNIPEAIIQG 1493

Query: 466  YLDIKLSPKIFLGTLSIMRLTGEGPTFDANTECNIAYTHTRFEIPEGTAQIYAGDDCAIA 287
            Y+DIK + K+F G L+IMRLTGEGPTFDANTECNIA+ HTRF I + TAQ+YAGDD A +
Sbjct: 1494 YIDIKTNAKVFTGVLAIMRLTGEGPTFDANTECNIAFNHTRFHISDDTAQLYAGDDTAFS 1553

Query: 286  QVCPEKPSFALLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAK 107
            ++  EK SF  +  ++AL +KP +  Q++G+WAEFCGY ITP GLIK+P KL A+L LA 
Sbjct: 1554 KIPIEKVSFQGVAKQLALTSKPLFYKQKKGEWAEFCGYSITPLGLIKEPKKLQANLTLAI 1613

Query: 106  AQKKAGVKDAISNVIANYSLDAKLAYSLGDDLQDL 2
             Q K  +KD ++    +YS D  LAY   D+L ++
Sbjct: 1614 KQNK--IKDTVN----SYSQDVALAYQHKDELYEI 1642


>ref|YP_004849314.1| replicase [Tamus red mosaic virus] gi|345548097|gb|AEO12140.1|
            replicase [Tamus red mosaic virus]
          Length = 1501

 Score =  510 bits (1314), Expect = e-142
 Identities = 243/393 (61%), Positives = 298/393 (75%)
 Frame = -3

Query: 1186 EREIFTEAHGHTNCVQGDDPTTQLFSHQQAKDEALLWETIKARLTISTPEANLEEFRAKK 1007
            +REIF   HGH+NCVQ D+PT QL SHQQAKD+ LLW TI+ARL ISTPE NL E+  K+
Sbjct: 1085 DREIFRADHGHSNCVQTDNPTIQLSSHQQAKDQTLLWATIEARLKISTPERNLAEYLMKR 1144

Query: 1006 DLGDILWANYHKAMKLPKEQPEFSEDLWTRCAEEVQNTYLKKSISQIKGGERRQSPDFHE 827
            ++GD+LW +Y  AM LP+E   F + LW  CAEEVQ TYL K +  +K GE RQSPDFH+
Sbjct: 1145 EVGDVLWLHYKNAMNLPEEPIPFEQTLWDTCAEEVQKTYLSKPMHMLKNGELRQSPDFHK 1204

Query: 826  HQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDALSPNNIM 647
            + I +FLKSQWVKKMEKLGA KIKPGQTIASFQQ AVMLYGTMARYMRR R+   P ++ 
Sbjct: 1205 NTIALFLKSQWVKKMEKLGADKIKPGQTIASFQQAAVMLYGTMARYMRRMREVFQPTHVF 1264

Query: 646  INCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEG 467
            INCE++P+ +S W+ N W+F   +YANDFT FDQSQDGAMLQFEILKAK+ ++PEWV+EG
Sbjct: 1265 INCEQSPEGMSDWIKNEWNFKGNAYANDFTQFDQSQDGAMLQFEILKAKHHSIPEWVLEG 1324

Query: 466  YLDIKLSPKIFLGTLSIMRLTGEGPTFDANTECNIAYTHTRFEIPEGTAQIYAGDDCAIA 287
            YLDIK +  +F GTL IMRLTGEGPTFDANTECNIAYTH RF +P+GTAQ YAGDD  +A
Sbjct: 1325 YLDIKTNAHVFTGTLGIMRLTGEGPTFDANTECNIAYTHLRFNVPKGTAQAYAGDDSVLA 1384

Query: 286  QVCPEKPSFALLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAK 107
             +  E+ SF + KN++ L AKP Y PQ +G+WA+FCG+L TP G +K+PLK+ A +ELAK
Sbjct: 1385 CIPEERESFKMWKNKLELTAKPEYFPQMQGEWAQFCGFLFTPLGALKEPLKMLAVVELAK 1444

Query: 106  AQKKAGVKDAISNVIANYSLDAKLAYSLGDDLQ 8
                   +  +   + +Y+LD  L Y  GD LQ
Sbjct: 1445 Q------RGELKKNMRSYALDVLLNYQHGDALQ 1471


>gb|AAF67818.1|AF111193_1 replicase [Potato virus X]
          Length = 1456

 Score =  505 bits (1300), Expect = e-140
 Identities = 243/396 (61%), Positives = 300/396 (75%)
 Frame = -3

Query: 1189 FEREIFTEAHGHTNCVQGDDPTTQLFSHQQAKDEALLWETIKARLTISTPEANLEEFRAK 1010
            F+REI +E+HGH+NCVQ +D T QLFSHQQAKDE LLW TI ARL  S  E N  EF +K
Sbjct: 1034 FDREIHSESHGHSNCVQTEDTTIQLFSHQQAKDETLLWATIDARLKTSNQETNFREFLSK 1093

Query: 1009 KDLGDILWANYHKAMKLPKEQPEFSEDLWTRCAEEVQNTYLKKSISQIKGGERRQSPDFH 830
            KD+GD+L+ NY KAM LPKE+  FS+++W  CA EVQ+ YL KS   +  G  RQSPDF 
Sbjct: 1094 KDIGDVLFLNYQKAMGLPKERIPFSQEVWEACAHEVQSKYLSKSKCNLINGTVRQSPDFD 1153

Query: 829  EHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDALSPNNI 650
            E++I++FLKSQWV K+EKLG  KIKPGQTIA+F Q  VML+GTMARYMR FR A  P  +
Sbjct: 1154 ENKIMVFLKSQWVTKVEKLGLPKIKPGQTIAAFYQQTVMLFGTMARYMRWFRQAFQPKEV 1213

Query: 649  MINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIE 470
             INCE TP+D+S W LN W+F +PS AND+TAFDQSQDGAMLQFE+LKAK+  +PE +I+
Sbjct: 1214 FINCETTPEDMSAWALNNWNFGRPSLANDYTAFDQSQDGAMLQFEVLKAKHHCIPEEIIQ 1273

Query: 469  GYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTECNIAYTHTRFEIPEGTAQIYAGDDCAI 290
             Y+DIK + +IFLGTLSIMRLTGEGPTFDANTECNIAYTHT+F+IP GTAQ+YAGDD A+
Sbjct: 1274 AYIDIKTNAQIFLGTLSIMRLTGEGPTFDANTECNIAYTHTKFDIPAGTAQVYAGDDSAL 1333

Query: 289  AQVCPEKPSFALLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELA 110
              V   KPSF  L++++ L++KP  T Q++G W EFCG+LITPKG++KDP+KLH SL+LA
Sbjct: 1334 DCVPEVKPSFHRLEDKLLLKSKPVITQQKKGSWPEFCGWLITPKGVMKDPIKLHVSLKLA 1393

Query: 109  KAQKKAGVKDAISNVIANYSLDAKLAYSLGDDLQDL 2
            +A      K  +     +Y +D   AY   D L DL
Sbjct: 1394 EA------KGELKKCQDSYEIDLSYAYDHKDSLHDL 1423