BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ephedra25_contig00009749
         (789 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004247032.1| PREDICTED: putative tRNA pseudouridine synth...   238   2e-60
ref|XP_006348028.1| PREDICTED: putative tRNA pseudouridine synth...   238   2e-60
ref|XP_006348027.1| PREDICTED: putative tRNA pseudouridine synth...   238   2e-60
ref|XP_002467892.1| hypothetical protein SORBIDRAFT_01g035980 [S...   228   1e-57
ref|XP_002517734.1| pseudouridylate synthase, putative [Ricinus ...   227   3e-57
gb|EAZ26854.1| hypothetical protein OsJ_10771 [Oryza sativa Japo...   226   7e-57
ref|NP_001050056.1| Os03g0338600 [Oryza sativa Japonica Group] g...   226   7e-57
ref|XP_003561660.1| PREDICTED: putative tRNA pseudouridine synth...   225   2e-56
ref|XP_006468147.1| PREDICTED: putative tRNA pseudouridine synth...   223   6e-56
ref|XP_006468144.1| PREDICTED: putative tRNA pseudouridine synth...   223   6e-56
gb|EMT32485.1| Putative tRNA pseudouridine synthase [Aegilops ta...   223   8e-56
gb|EMS58771.1| Putative tRNA pseudouridine synthase [Triticum ur...   221   2e-55
ref|XP_004296032.1| PREDICTED: putative tRNA pseudouridine synth...   221   2e-55
emb|CBI15850.3| unnamed protein product [Vitis vinifera]              221   3e-55
emb|CAN68579.1| hypothetical protein VITISV_034891 [Vitis vinifera]   221   3e-55
ref|XP_002276856.1| PREDICTED: putative tRNA pseudouridine synth...   219   8e-55
ref|XP_002319961.2| hypothetical protein POPTR_0013s15030g [Popu...   218   2e-54
gb|ESW14065.1| hypothetical protein PHAVU_008G250100g [Phaseolus...   217   3e-54
ref|XP_004490688.1| PREDICTED: putative tRNA pseudouridine synth...   217   4e-54
gb|ESW14066.1| hypothetical protein PHAVU_008G250200g [Phaseolus...   216   5e-54

>ref|XP_004247032.1| PREDICTED: putative tRNA pseudouridine synthase-like [Solanum
           lycopersicum]
          Length = 496

 Score =  238 bits (607), Expect = 2e-60
 Identities = 132/273 (48%), Positives = 173/273 (63%), Gaps = 11/273 (4%)
 Frame = -3

Query: 787 AIFKAGGMLESNFGNLNKVGWTRSSRTDKGVHSLATVISMKLEIPIDAWVGDLDGLVLAD 608
           AIFKAGG+ ESNFGNL K+GW RSSRTDKGVHSLAT+IS+K+EIP DAW  D +G+ LA+
Sbjct: 81  AIFKAGGIRESNFGNLYKIGWARSSRTDKGVHSLATMISLKMEIPADAWEDDPNGITLAN 140

Query: 607 KLNVHLPYNIRVFSVLPVSQDFDARKKCISRKYTYLLPAEVIGINENSLPEEIENCIAKF 428
            +N  LP NIRVFS+LP  + FDAR++C +RKY+YL+PAE+IGI  +S   EIE  IA F
Sbjct: 141 CVNSSLPENIRVFSILPSKKRFDARRECNARKYSYLIPAEIIGIKNDSASSEIEYHIANF 200

Query: 427 RDILSSFEGRHPFHNYTVRAQYRKS-------KLNTLSK--RPKS--QVAEASDDETSKL 281
            DIL+SFEG HPFHNYT+R++YRK        K ++L K  RP S  +++ + + +  + 
Sbjct: 201 NDILNSFEGEHPFHNYTIRSKYRKQSPARNLLKNDSLLKKGRPSSEEEISGSEEIDGEQN 260

Query: 280 KTDDDLFEIDESREPEMQVLDDNAXXXXXXXXXXXXXXXXIVTTTEGSENIVPPLQARWL 101
           + +  +  I E+   E Q  + N                    +     N V P+QARWL
Sbjct: 261 RKEQGVVTIVEA---ENQNAEGNCNLK---------------VSHSKDLNSVIPIQARWL 302

Query: 100 HEPDMHDKLSAAHFRRILSFTCSDLQSIKNQRY 2
           HEPD  DKLS+AHFRRI    C  L+ +    Y
Sbjct: 303 HEPDARDKLSSAHFRRIFHCHCGKLEKLLGMNY 335


>ref|XP_006348028.1| PREDICTED: putative tRNA pseudouridine synthase-like isoform X2
           [Solanum tuberosum]
          Length = 423

 Score =  238 bits (606), Expect = 2e-60
 Identities = 134/271 (49%), Positives = 168/271 (61%), Gaps = 9/271 (3%)
 Frame = -3

Query: 787 AIFKAGGMLESNFGNLNKVGWTRSSRTDKGVHSLATVISMKLEIPIDAWVGDLDGLVLAD 608
           AIFKAGG+ +SNFGNL K+GW RSSRTDKGVHSLAT+IS+K+EIP DAW  D +G+ LA+
Sbjct: 21  AIFKAGGIRDSNFGNLYKIGWARSSRTDKGVHSLATMISLKMEIPADAWEDDPNGIALAN 80

Query: 607 KLNVHLPYNIRVFSVLPVSQDFDARKKCISRKYTYLLPAEVIGINENSLPEEIENCIAKF 428
            +N  LP NIRVFS+LP  + FDAR++C +RKY+YL+PAE+IGI  +S   EIE  IA F
Sbjct: 81  CVNSSLPENIRVFSILPSKKRFDARRECNARKYSYLIPAEIIGIKNDSTSSEIEYHIANF 140

Query: 427 RDILSSFEGRHPFHNYTVRAQYRKS-------KLNTLSK--RPKSQVAEASDDETSKLKT 275
            DIL+SFEG HPFHNYT+R++YRK        K  +L K  RP S+  E S  E S  + 
Sbjct: 141 NDILNSFEGEHPFHNYTIRSKYRKQSPARNLLKNESLLKKGRPSSE-KEISGSEESDGEQ 199

Query: 274 DDDLFEIDESREPEMQVLDDNAXXXXXXXXXXXXXXXXIVTTTEGSENIVPPLQARWLHE 95
           +     +    E E Q  + N                    +     N V P+QARWLHE
Sbjct: 200 NGKEKGVVTIVEAENQNPEGNCNEK---------------VSHSKDLNSVIPIQARWLHE 244

Query: 94  PDMHDKLSAAHFRRILSFTCSDLQSIKNQRY 2
           PD  DKLS+AHFRRI    C  L+ +    Y
Sbjct: 245 PDARDKLSSAHFRRIFHCHCGKLEKLLGMNY 275


>ref|XP_006348027.1| PREDICTED: putative tRNA pseudouridine synthase-like isoform X1
           [Solanum tuberosum]
          Length = 487

 Score =  238 bits (606), Expect = 2e-60
 Identities = 134/271 (49%), Positives = 168/271 (61%), Gaps = 9/271 (3%)
 Frame = -3

Query: 787 AIFKAGGMLESNFGNLNKVGWTRSSRTDKGVHSLATVISMKLEIPIDAWVGDLDGLVLAD 608
           AIFKAGG+ +SNFGNL K+GW RSSRTDKGVHSLAT+IS+K+EIP DAW  D +G+ LA+
Sbjct: 85  AIFKAGGIRDSNFGNLYKIGWARSSRTDKGVHSLATMISLKMEIPADAWEDDPNGIALAN 144

Query: 607 KLNVHLPYNIRVFSVLPVSQDFDARKKCISRKYTYLLPAEVIGINENSLPEEIENCIAKF 428
            +N  LP NIRVFS+LP  + FDAR++C +RKY+YL+PAE+IGI  +S   EIE  IA F
Sbjct: 145 CVNSSLPENIRVFSILPSKKRFDARRECNARKYSYLIPAEIIGIKNDSTSSEIEYHIANF 204

Query: 427 RDILSSFEGRHPFHNYTVRAQYRKS-------KLNTLSK--RPKSQVAEASDDETSKLKT 275
            DIL+SFEG HPFHNYT+R++YRK        K  +L K  RP S+  E S  E S  + 
Sbjct: 205 NDILNSFEGEHPFHNYTIRSKYRKQSPARNLLKNESLLKKGRPSSE-KEISGSEESDGEQ 263

Query: 274 DDDLFEIDESREPEMQVLDDNAXXXXXXXXXXXXXXXXIVTTTEGSENIVPPLQARWLHE 95
           +     +    E E Q  + N                    +     N V P+QARWLHE
Sbjct: 264 NGKEKGVVTIVEAENQNPEGNCNEK---------------VSHSKDLNSVIPIQARWLHE 308

Query: 94  PDMHDKLSAAHFRRILSFTCSDLQSIKNQRY 2
           PD  DKLS+AHFRRI    C  L+ +    Y
Sbjct: 309 PDARDKLSSAHFRRIFHCHCGKLEKLLGMNY 339


>ref|XP_002467892.1| hypothetical protein SORBIDRAFT_01g035980 [Sorghum bicolor]
           gi|241921746|gb|EER94890.1| hypothetical protein
           SORBIDRAFT_01g035980 [Sorghum bicolor]
          Length = 520

 Score =  228 bits (582), Expect = 1e-57
 Identities = 126/269 (46%), Positives = 167/269 (62%), Gaps = 13/269 (4%)
 Frame = -3

Query: 787 AIFKAGGMLESNFGNLNKVGWTRSSRTDKGVHSLATVISMKLEIPIDAWVGDLDGLVLAD 608
           AIFK+GG+LESN+G L KVGW RSSRTDKGVHSLAT+IS+K+EIP  AW  D DG+ LA 
Sbjct: 112 AIFKSGGILESNYGKLQKVGWERSSRTDKGVHSLATMISLKMEIPDRAWEDDPDGIALAS 171

Query: 607 KLNVHLPYNIRVFSVLPVSQDFDARKKCISRKYTYLLPAEVIGINENSLPEEIENCIAKF 428
            +N +LP N+RVFS+LP  + FD R++C+ R+Y YLLPAEVIGI +   PEEI+  +++F
Sbjct: 172 FINSNLPDNVRVFSILPAQRSFDVRRECLYREYFYLLPAEVIGIKDGYSPEEIQEHLSEF 231

Query: 427 RDILSSFEGRHPFHNYTVRAQYRK-----------SKLNTLSKRPKSQVAEASDDETSKL 281
             IL  FEG HPFHNYT RA+YRK           + L   S   +  +AE+S  E++  
Sbjct: 232 NSILKGFEGNHPFHNYTARAKYRKVLAGRHPRAKGASLTLKSMSSEMGMAESSSLESTSS 291

Query: 280 KTDDDL--FEIDESREPEMQVLDDNAXXXXXXXXXXXXXXXXIVTTTEGSENIVPPLQAR 107
             D+DL    ID      + V D                        + SE+ V  +QAR
Sbjct: 292 DDDEDLNISSIDSGASENIFVND----------------------ILKFSESRVQ-IQAR 328

Query: 106 WLHEPDMHDKLSAAHFRRILSFTCSDLQS 20
           WLHEPD  D+L+A+HFR I++ +C +LQ+
Sbjct: 329 WLHEPDESDRLNASHFRDIITCSCGELQT 357


>ref|XP_002517734.1| pseudouridylate synthase, putative [Ricinus communis]
           gi|223543132|gb|EEF44666.1| pseudouridylate synthase,
           putative [Ricinus communis]
          Length = 377

 Score =  227 bits (579), Expect = 3e-57
 Identities = 118/260 (45%), Positives = 167/260 (64%), Gaps = 2/260 (0%)
 Frame = -3

Query: 787 AIFKAGGMLESNFGNLNKVGWTRSSRTDKGVHSLATVISMKLEIPIDAWVGDLDGLVLAD 608
           AIFKAGG+L+SN+GNL+K+ W RSSRTDKGVHSLAT+ISMK+EIP +AW  D +G+ LA+
Sbjct: 89  AIFKAGGILDSNYGNLHKIAWARSSRTDKGVHSLATMISMKMEIPENAWKEDPNGIALAE 148

Query: 607 KLNVHLPYNIRVFSVLPVSQDFDARKKCISRKYTYLLPAEVIGINENSLPEEIENCIAKF 428
            +N +LP NIR+FS+LP  + FD R++C  RKY+YLLPAE+IGI  +    EI+N I+ F
Sbjct: 149 CVNYYLPDNIRIFSILPSQKSFDPRRECNLRKYSYLLPAEIIGIKGHFTSAEIDNHISDF 208

Query: 427 RDILSSFEGRHPFHNYTVRAQYRKSKLNTLSKRPKSQVAEASDDETSKLKTDD--DLFEI 254
            DIL++FEG HPFHNYT+R++YRK     ++ R   +   +S+  TS+ +  D  + +EI
Sbjct: 209 NDILNAFEGEHPFHNYTIRSKYRKQYPTAITGRVPKRARSSSERSTSESEKSDGEEDYEI 268

Query: 253 DESREPEMQVLDDNAXXXXXXXXXXXXXXXXIVTTTEGSENIVPPLQARWLHEPDMHDKL 74
           D     E+ + D N                  V      +     + ARWL+EPD  D++
Sbjct: 269 D-----EINIEDHNGSIQSSSKFRFSNQQKGGVLE---QQQYNAGILARWLYEPDETDRI 320

Query: 73  SAAHFRRILSFTCSDLQSIK 14
            A+HFR+I   +C  L++ K
Sbjct: 321 GASHFRKIFRCSCGKLETSK 340


>gb|EAZ26854.1| hypothetical protein OsJ_10771 [Oryza sativa Japonica Group]
          Length = 516

 Score =  226 bits (576), Expect = 7e-57
 Identities = 125/264 (47%), Positives = 165/264 (62%), Gaps = 9/264 (3%)
 Frame = -3

Query: 787 AIFKAGGMLESNFGNLNKVGWTRSSRTDKGVHSLATVISMKLEIPIDAWVGDLDGLVLAD 608
           AIFKAGG+LESN+G L KVGW RSSRTDKGVHSLAT+IS+K+EIP  AW  D DG+ L++
Sbjct: 107 AIFKAGGILESNYGKLQKVGWERSSRTDKGVHSLATMISLKMEIPDRAWENDPDGIALSN 166

Query: 607 KLNVHLPYNIRVFSVLPVSQDFDARKKCISRKYTYLLPAEVIGINENSLPEEIENCIAKF 428
            +N +LP N+RVFSVLP  + FD R++C+ R+Y YLLPAE+IGI      EE+   +++F
Sbjct: 167 FINSNLPDNVRVFSVLPAQRSFDVRRECLYREYLYLLPAEIIGIKGGCSSEEVMEHLSEF 226

Query: 427 RDILSSFEGRHPFHNYTVRAQYRK------SKLNTLSKRPKSQVAEASDDETSK---LKT 275
             IL  FEG HPFHNYT RA+YRK       K+   S    S   E S D++S      +
Sbjct: 227 NSILKGFEGNHPFHNYTARAKYRKVLAGRHRKVKGASSAVNSMPTEMSLDQSSSDDGTTS 286

Query: 274 DDDLFEIDESREPEMQVLDDNAXXXXXXXXXXXXXXXXIVTTTEGSENIVPPLQARWLHE 95
           D D  +++ S      V +D+                      E SE  V  ++ARWLHE
Sbjct: 287 DHDEEDLNSSSIIGSSVPEDS-----------------YKDNPEFSEKQV-QIRARWLHE 328

Query: 94  PDMHDKLSAAHFRRILSFTCSDLQ 23
           PD +D+L+A+HFR IL+F+C +LQ
Sbjct: 329 PDENDRLNASHFRDILTFSCGELQ 352


>ref|NP_001050056.1| Os03g0338600 [Oryza sativa Japonica Group]
           gi|108708043|gb|ABF95838.1| tRNA pseudouridine synthase
           family protein, expressed [Oryza sativa Japonica Group]
           gi|113548527|dbj|BAF11970.1| Os03g0338600 [Oryza sativa
           Japonica Group]
          Length = 516

 Score =  226 bits (576), Expect = 7e-57
 Identities = 125/264 (47%), Positives = 165/264 (62%), Gaps = 9/264 (3%)
 Frame = -3

Query: 787 AIFKAGGMLESNFGNLNKVGWTRSSRTDKGVHSLATVISMKLEIPIDAWVGDLDGLVLAD 608
           AIFKAGG+LESN+G L KVGW RSSRTDKGVHSLAT+IS+K+EIP  AW  D DG+ L++
Sbjct: 107 AIFKAGGILESNYGKLQKVGWERSSRTDKGVHSLATMISLKMEIPDRAWENDPDGIALSN 166

Query: 607 KLNVHLPYNIRVFSVLPVSQDFDARKKCISRKYTYLLPAEVIGINENSLPEEIENCIAKF 428
            +N +LP N+RVFSVLP  + FD R++C+ R+Y YLLPAE+IGI      EE+   +++F
Sbjct: 167 FINSNLPDNVRVFSVLPAQRSFDVRRECLYREYLYLLPAEIIGIKGGCSSEEVMEHLSEF 226

Query: 427 RDILSSFEGRHPFHNYTVRAQYRK------SKLNTLSKRPKSQVAEASDDETSK---LKT 275
             IL  FEG HPFHNYT RA+YRK       K+   S    S   E S D++S      +
Sbjct: 227 NSILKGFEGNHPFHNYTARAKYRKVLAGRHRKVKGASSAVNSMPTEMSLDQSSSDDGTTS 286

Query: 274 DDDLFEIDESREPEMQVLDDNAXXXXXXXXXXXXXXXXIVTTTEGSENIVPPLQARWLHE 95
           D D  +++ S      V +D+                      E SE  V  ++ARWLHE
Sbjct: 287 DHDEEDLNSSSIIGSSVPEDS-----------------YKDNPEFSEKQV-QIRARWLHE 328

Query: 94  PDMHDKLSAAHFRRILSFTCSDLQ 23
           PD +D+L+A+HFR IL+F+C +LQ
Sbjct: 329 PDENDRLNASHFRDILTFSCGELQ 352


>ref|XP_003561660.1| PREDICTED: putative tRNA pseudouridine synthase-like [Brachypodium
           distachyon]
          Length = 522

 Score =  225 bits (573), Expect = 2e-56
 Identities = 123/270 (45%), Positives = 162/270 (60%), Gaps = 14/270 (5%)
 Frame = -3

Query: 787 AIFKAGGMLESNFGNLNKVGWTRSSRTDKGVHSLATVISMKLEIPIDAWVGDLDGLVLAD 608
           AIFKAGG+LESN+G L KVGW RSSRTDKGVHSLAT+IS+K+EIP  AW  D DG+ LA+
Sbjct: 112 AIFKAGGILESNYGKLQKVGWERSSRTDKGVHSLATMISLKMEIPDRAWENDPDGIALAN 171

Query: 607 KLNVHLPYNIRVFSVLPVSQDFDARKKCISRKYTYLLPAEVIGINENSLPEEIENCIAKF 428
            +N +LP NI+VFS+LP  + FD R++C+ R+Y YLLPAE+IGI      EE+E  + +F
Sbjct: 172 FINSNLPNNIKVFSILPAQRSFDVRRECLYREYFYLLPAEIIGIKSGCSSEEVEEHLIEF 231

Query: 427 RDILSSFEGRHPFHNYTVRAQYR----------KSKLNTLSKRPKSQVAEASDDETSKLK 278
             IL  FEG HPFHNYT RA+YR          K   +T++  P     + S ++     
Sbjct: 232 NSILKGFEGNHPFHNYTARAKYRKVLAGAHRRSKETSSTINSIPSELAVDQSPNDDGATS 291

Query: 277 TDDD----LFEIDESREPEMQVLDDNAXXXXXXXXXXXXXXXXIVTTTEGSENIVPPLQA 110
             DD       + +S  PE     DN                      +  EN V  +QA
Sbjct: 292 DADDEHLNFSSVVDSSLPENDWNKDN---------------------PKHHENHV-QIQA 329

Query: 109 RWLHEPDMHDKLSAAHFRRILSFTCSDLQS 20
           RWLHEP+ +D+LSA+HFR I++ +C +LQS
Sbjct: 330 RWLHEPNENDRLSASHFRDIITCSCGELQS 359


>ref|XP_006468147.1| PREDICTED: putative tRNA pseudouridine synthase-like isoform X4
           [Citrus sinensis]
          Length = 539

 Score =  223 bits (568), Expect = 6e-56
 Identities = 122/264 (46%), Positives = 161/264 (60%), Gaps = 9/264 (3%)
 Frame = -3

Query: 787 AIFKAGGMLESNFGNLNKVGWTRSSRTDKGVHSLATVISMKLEIPIDAWVGDLDGLVLAD 608
           A+FKAGG+ ESN+GNL K+ W RSSRTDKGVHSLAT+I +K+EIP DAW  D  G+ LA 
Sbjct: 113 AVFKAGGIRESNYGNLQKIAWARSSRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAK 172

Query: 607 KLNVHLPYNIRVFSVLPVSQDFDARKKCISRKYTYLLPAEVIGINENSLPEEIENCIAKF 428
           ++N HLP NI+VFS+LP  + FD R++C  RKY+YLLPAEVIGIN      EI++ I+ F
Sbjct: 173 RVNAHLPRNIKVFSILPSQRSFDPRRECNLRKYSYLLPAEVIGINSQLTAAEIDSHISDF 232

Query: 427 RDILSSFEGRHPFHNYTVRAQYRKS--KLNTLSKRPK-------SQVAEASDDETSKLKT 275
             IL+ FEG HPFHNYT R++YR+   K   +SKR K       S+V E+  +E    K 
Sbjct: 233 NAILNEFEGEHPFHNYTERSKYRRKPHKTGCVSKRAKASKDAVFSRVEESEGEEDGFSKV 292

Query: 274 DDDLFEIDESREPEMQVLDDNAXXXXXXXXXXXXXXXXIVTTTEGSENIVPPLQARWLHE 95
           ++   E D     E+   D+ A                        +N    ++ARWL+E
Sbjct: 293 EESDGEEDLGIGGEISSDDEKANQNSMVSGVHQEDCCNQHANGLKDQNSSSVIRARWLYE 352

Query: 94  PDMHDKLSAAHFRRILSFTCSDLQ 23
            D  DKLSA+HFR+I S +C  L+
Sbjct: 353 TDEADKLSASHFRKIFSCSCGKLE 376


>ref|XP_006468144.1| PREDICTED: putative tRNA pseudouridine synthase-like isoform X1
           [Citrus sinensis] gi|568827612|ref|XP_006468145.1|
           PREDICTED: putative tRNA pseudouridine synthase-like
           isoform X2 [Citrus sinensis]
           gi|568827614|ref|XP_006468146.1| PREDICTED: putative
           tRNA pseudouridine synthase-like isoform X3 [Citrus
           sinensis]
          Length = 605

 Score =  223 bits (568), Expect = 6e-56
 Identities = 122/264 (46%), Positives = 161/264 (60%), Gaps = 9/264 (3%)
 Frame = -3

Query: 787 AIFKAGGMLESNFGNLNKVGWTRSSRTDKGVHSLATVISMKLEIPIDAWVGDLDGLVLAD 608
           A+FKAGG+ ESN+GNL K+ W RSSRTDKGVHSLAT+I +K+EIP DAW  D  G+ LA 
Sbjct: 179 AVFKAGGIRESNYGNLQKIAWARSSRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAK 238

Query: 607 KLNVHLPYNIRVFSVLPVSQDFDARKKCISRKYTYLLPAEVIGINENSLPEEIENCIAKF 428
           ++N HLP NI+VFS+LP  + FD R++C  RKY+YLLPAEVIGIN      EI++ I+ F
Sbjct: 239 RVNAHLPRNIKVFSILPSQRSFDPRRECNLRKYSYLLPAEVIGINSQLTAAEIDSHISDF 298

Query: 427 RDILSSFEGRHPFHNYTVRAQYRKS--KLNTLSKRPK-------SQVAEASDDETSKLKT 275
             IL+ FEG HPFHNYT R++YR+   K   +SKR K       S+V E+  +E    K 
Sbjct: 299 NAILNEFEGEHPFHNYTERSKYRRKPHKTGCVSKRAKASKDAVFSRVEESEGEEDGFSKV 358

Query: 274 DDDLFEIDESREPEMQVLDDNAXXXXXXXXXXXXXXXXIVTTTEGSENIVPPLQARWLHE 95
           ++   E D     E+   D+ A                        +N    ++ARWL+E
Sbjct: 359 EESDGEEDLGIGGEISSDDEKANQNSMVSGVHQEDCCNQHANGLKDQNSSSVIRARWLYE 418

Query: 94  PDMHDKLSAAHFRRILSFTCSDLQ 23
            D  DKLSA+HFR+I S +C  L+
Sbjct: 419 TDEADKLSASHFRKIFSCSCGKLE 442


>gb|EMT32485.1| Putative tRNA pseudouridine synthase [Aegilops tauschii]
          Length = 429

 Score =  223 bits (567), Expect = 8e-56
 Identities = 127/264 (48%), Positives = 165/264 (62%), Gaps = 8/264 (3%)
 Frame = -3

Query: 787 AIFKAGGMLESNFGNLNKVGWTRSSRTDKGVHSLATVISMKLEIPIDAWVGDLDGLVLAD 608
           AIFKAGG+LESN+G L KVGW RSSRTDKGVHSLAT+IS+K+EIP  AW  D DG+ LA+
Sbjct: 19  AIFKAGGILESNYGKLQKVGWERSSRTDKGVHSLATMISLKMEIPDRAWEKDPDGIALAN 78

Query: 607 KLNVHLPYNIRVFSVLPVSQDFDARKKCISRKYTYLLPAEVIGINENSLPEEIENCIAKF 428
            +N +LP NI+VFS+LP  + FD R++C+ R+Y YLLPAE+IGI  +    E+E  + +F
Sbjct: 79  FINSNLPDNIKVFSILPAQRSFDVRRECLYREYFYLLPAEIIGIKSSCSSGEVEEHLIEF 138

Query: 427 RDILSSFEGRHPFHNYTVRAQYRKSKLNTLSKRPKSQVAEA--------SDDETSKLKTD 272
            +IL  FEG HPFHNYT RA+YRK  L    +R K     A        +D  TS   T 
Sbjct: 139 NNILKGFEGNHPFHNYTARAKYRK-VLAGAHRRAKETSTTAHSIPFEMVADQSTSGDGTT 197

Query: 271 DDLFEIDESREPEMQVLDDNAXXXXXXXXXXXXXXXXIVTTTEGSENIVPPLQARWLHEP 92
            D   IDE       +LD +A                 +   E  E+ V  +QARWLHEP
Sbjct: 198 SD---IDEEYLNSPSILDSSA-----------PEDNCKMDNPELPESRV-QIQARWLHEP 242

Query: 91  DMHDKLSAAHFRRILSFTCSDLQS 20
           + +D+LSA+HFR IL+ +C +L+S
Sbjct: 243 NDNDRLSASHFRDILTCSCGELRS 266


>gb|EMS58771.1| Putative tRNA pseudouridine synthase [Triticum urartu]
          Length = 450

 Score =  221 bits (564), Expect = 2e-55
 Identities = 124/266 (46%), Positives = 162/266 (60%), Gaps = 10/266 (3%)
 Frame = -3

Query: 787 AIFKAGGMLESNFGNLNKVGWTRSSRTDKGVHSLATVISMKLEIPIDAWVGDLDGLVLAD 608
           AIFKAGG+LESN+G L KVGW RSSRTDKGVHSLAT+IS+K+EIP  AW  D DG+ LA+
Sbjct: 40  AIFKAGGILESNYGKLQKVGWERSSRTDKGVHSLATMISLKMEIPDRAWEKDPDGIALAN 99

Query: 607 KLNVHLPYNIRVFSVLPVSQDFDARKKCISRKYTYLLPAEVIGINENSLPEEIENCIAKF 428
            +N +LP NI+VFS+LP  + FD R++C+ R+Y YLLPAE+IGI  +    E+E  + +F
Sbjct: 100 FINSNLPDNIKVFSILPAQRSFDVRRECLYREYFYLLPAEIIGIKSSCSSGEVEEHLIEF 159

Query: 427 RDILSSFEGRHPFHNYTVRAQYR----------KSKLNTLSKRPKSQVAEASDDETSKLK 278
            +IL  FEG HPFHNYT RA+YR          K    T    P   VA+ S        
Sbjct: 160 NNILKCFEGNHPFHNYTARAKYRKVLAGAHRRAKETSTTAHSIPSEMVADKS------TS 213

Query: 277 TDDDLFEIDESREPEMQVLDDNAXXXXXXXXXXXXXXXXIVTTTEGSENIVPPLQARWLH 98
            D    +IDE       +LD +A                 +   E  E+ V  +QARWLH
Sbjct: 214 GDGTTSDIDEEYLNSPSILDSSA-----------PEDNCNMDNPELPESHV-QIQARWLH 261

Query: 97  EPDMHDKLSAAHFRRILSFTCSDLQS 20
           EP+ +D+LSA+HFR IL+ +C +L+S
Sbjct: 262 EPNDNDRLSASHFRDILTCSCRELRS 287


>ref|XP_004296032.1| PREDICTED: putative tRNA pseudouridine synthase-like [Fragaria
           vesca subsp. vesca]
          Length = 509

 Score =  221 bits (563), Expect = 2e-55
 Identities = 118/268 (44%), Positives = 163/268 (60%), Gaps = 6/268 (2%)
 Frame = -3

Query: 787 AIFKAGGMLESNFGNLNKVGWTRSSRTDKGVHSLATVISMKLEIPIDAWVGDLDGLVLAD 608
           AIFKAGG+ ESNFGNLNK+ W RSSRTDKGVHSLAT+IS+K+EIP +AW GD  G+ L +
Sbjct: 95  AIFKAGGIRESNFGNLNKISWARSSRTDKGVHSLATMISLKMEIPENAWDGDPYGIALVN 154

Query: 607 KLNVHLPYNIRVFSVLPVSQDFDARKKCISRKYTYLLPAEVIGINENSLPEEIENCIAKF 428
            +N +LP +I+VFS +P  + FD RK+C  R Y+YLLPA+VIGI  +    EIE+ IA F
Sbjct: 155 HINSYLPRDIKVFSAVPAQRSFDPRKECNLRMYSYLLPADVIGIKSHFSAAEIEDHIADF 214

Query: 427 RDILSSFEGRHPFHNYTVRAQYR------KSKLNTLSKRPKSQVAEASDDETSKLKTDDD 266
            DIL++FEG HPFHNYT+R++YR      KS +     + +    EAS  E      D+D
Sbjct: 215 NDILNAFEGEHPFHNYTIRSKYRMKLPGKKSPIYRNMSKTERSTVEASSSELEG-SDDED 273

Query: 265 LFEIDESREPEMQVLDDNAXXXXXXXXXXXXXXXXIVTTTEGSENIVPPLQARWLHEPDM 86
            F+   S E E+   + +                  V   + ++++V    A+WL+EPD 
Sbjct: 274 KFKGRNSSETEVLNQNSSMSSNGNEILLHACKKQEDVLKEKSTDSVV---YAKWLYEPDE 330

Query: 85  HDKLSAAHFRRILSFTCSDLQSIKNQRY 2
            D++ A+HFR+I   +C  L+      Y
Sbjct: 331 SDRIGASHFRKIFRCSCGKLEKSLTHEY 358


>emb|CBI15850.3| unnamed protein product [Vitis vinifera]
          Length = 495

 Score =  221 bits (562), Expect = 3e-55
 Identities = 120/271 (44%), Positives = 165/271 (60%), Gaps = 9/271 (3%)
 Frame = -3

Query: 787 AIFKAGGMLESNFGNLNKVGWTRSSRTDKGVHSLATVISMKLEIPIDAWVGDLDGLVLAD 608
           A+FKAGG+ +SN+GNL+K+GW RSSRTDKGVHSLAT+IS+K+EIP +AW  D +G+ LA+
Sbjct: 98  AVFKAGGIRDSNYGNLHKIGWDRSSRTDKGVHSLATMISLKMEIPANAWKEDPNGIALAN 157

Query: 607 KLNVHLPYNIRVFSVLPVSQDFDARKKCISRKYTYLLPAEVIGINENSLPEEIENCIAKF 428
            +N HLP NI+VFS+LP  + FDAR++C  R+Y+YLLPAE+IGI  NS   EI++ IA+F
Sbjct: 158 YVNFHLPNNIKVFSILPSQRSFDARRECDLRRYSYLLPAEIIGIKSNSSASEIDHHIAEF 217

Query: 427 RDILSSFEGRHPFHNYTVRAQYRKSKLNTLS-------KRPKSQVAEASDDETSKLKTDD 269
            DIL++FEG HPF NYT+R++YRK      S       +R KS V  +  DE     + +
Sbjct: 218 NDILNTFEGEHPFQNYTIRSKYRKQFPAKQSPGNGGVFRRAKSSVISSDYDEGENQNSSE 277

Query: 268 DLFEIDESREPEMQVLDDNAXXXXXXXXXXXXXXXXIVTTTEGSENIVPPL--QARWLHE 95
               +      E  V   N                      +G +   P L  +ARWLH 
Sbjct: 278 STSFV------EHPVGSSN-------------------NNEKGLKEQSPKLVVRARWLHG 312

Query: 94  PDMHDKLSAAHFRRILSFTCSDLQSIKNQRY 2
           PD  D++SA+HFR+I + +C  L+      Y
Sbjct: 313 PDERDRISASHFRKIFNCSCGKLEKFLGLDY 343


>emb|CAN68579.1| hypothetical protein VITISV_034891 [Vitis vinifera]
          Length = 602

 Score =  221 bits (562), Expect = 3e-55
 Identities = 116/270 (42%), Positives = 166/270 (61%), Gaps = 8/270 (2%)
 Frame = -3

Query: 787 AIFKAGGMLESNFGNLNKVGWTRSSRTDKGVHSLATVISMKLEIPIDAWVGDLDGLVLAD 608
           A+FKAGG+ +SN+GNL+K+GW RSSRTDKGVHSLAT+IS+K+EIP +AW  D +G+ LA+
Sbjct: 98  AVFKAGGIRDSNYGNLHKIGWDRSSRTDKGVHSLATMISLKMEIPANAWKEDPNGIALAN 157

Query: 607 KLNVHLPYNIRVFSVLPVSQDFDARKKCISRKYTYLLPAEVIGINENSLPEEIENCIAKF 428
            +N HLP NI+VFS+LP  + FDAR++C  R+Y+YLLPAE+IGI  NS   EI++ IA+F
Sbjct: 158 YVNFHLPNNIKVFSILPSQRSFDARRECDLRRYSYLLPAEIIGIKSNSSASEIDHHIAEF 217

Query: 427 RDILSSFEGRHPFHNYTVRAQYRK--------SKLNTLSKRPKSQVAEASDDETSKLKTD 272
            DIL++FEG HPF NYT+R++YRK               +   S  A  S+ E S  + +
Sbjct: 218 NDILNTFEGEHPFQNYTIRSKYRKQFPAKQSPGNGGVFRRAKSSGEASTSEFEVSDGEEN 277

Query: 271 DDLFEIDESREPEMQVLDDNAXXXXXXXXXXXXXXXXIVTTTEGSENIVPPLQARWLHEP 92
             +  +  S   E +  + +                      + S+ +V   +ARWLH P
Sbjct: 278 SGVNGVISSDYDEGENQNSSESTSFVEHPVGSSNNNEKGLKEQSSKLVV---RARWLHGP 334

Query: 91  DMHDKLSAAHFRRILSFTCSDLQSIKNQRY 2
           D  D++SA+HFR+I + +C  L+      Y
Sbjct: 335 DERDRISASHFRKIFNCSCGKLEKFLGLDY 364


>ref|XP_002276856.1| PREDICTED: putative tRNA pseudouridine synthase-like [Vitis
           vinifera]
          Length = 564

 Score =  219 bits (558), Expect = 8e-55
 Identities = 117/270 (43%), Positives = 167/270 (61%), Gaps = 8/270 (2%)
 Frame = -3

Query: 787 AIFKAGGMLESNFGNLNKVGWTRSSRTDKGVHSLATVISMKLEIPIDAWVGDLDGLVLAD 608
           A+FKAGG+ +SN+GNL+K+GW RSSRTDKGVHSLAT+IS+K+EIP +AW  D +G+ LA+
Sbjct: 98  AVFKAGGIRDSNYGNLHKIGWDRSSRTDKGVHSLATMISLKMEIPANAWKEDPNGIALAN 157

Query: 607 KLNVHLPYNIRVFSVLPVSQDFDARKKCISRKYTYLLPAEVIGINENSLPEEIENCIAKF 428
            +N HLP NI+VFS+LP  + FDAR++C  R+Y+YLLPAE+IGI  NS   EI++ IA+F
Sbjct: 158 YVNFHLPNNIKVFSILPSQRSFDARRECDLRRYSYLLPAEIIGIKSNSSASEIDHHIAEF 217

Query: 427 RDILSSFEGRHPFHNYTVRAQYRK--------SKLNTLSKRPKSQVAEASDDETSKLKTD 272
            DIL++FEG HPF NYT+R++YRK               +   S  A  S+ E S  + +
Sbjct: 218 NDILNTFEGEHPFQNYTIRSKYRKQFPAKQSPGNGGVFRRAKSSGEASTSEFEVSDGEEN 277

Query: 271 DDLFEIDESREPEMQVLDDNAXXXXXXXXXXXXXXXXIVTTTEGSENIVPPLQARWLHEP 92
             +  +  S   E +   +++                     E S  +V  ++ARWLH P
Sbjct: 278 SGINGVISSDYDEGE-NQNSSESTSFVEHPVGSSNNNEKGLKEQSPKLV--VRARWLHGP 334

Query: 91  DMHDKLSAAHFRRILSFTCSDLQSIKNQRY 2
           D  D++SA+HFR+I + +C  L+      Y
Sbjct: 335 DERDRISASHFRKIFNCSCGKLEKFLGLDY 364


>ref|XP_002319961.2| hypothetical protein POPTR_0013s15030g [Populus trichocarpa]
           gi|550325882|gb|EEE95884.2| hypothetical protein
           POPTR_0013s15030g [Populus trichocarpa]
          Length = 505

 Score =  218 bits (554), Expect = 2e-54
 Identities = 120/258 (46%), Positives = 166/258 (64%), Gaps = 3/258 (1%)
 Frame = -3

Query: 787 AIFKAGGMLESNFGNLNKVGWTRSSRTDKGVHSLATVISMKLEIPIDAWVGDLDGLVLAD 608
           AI++AGG+ ESN+GNLNK+ W RSSRTDKGVHSLAT I+MK+EIP +AW  DL G+VLA 
Sbjct: 111 AIYEAGGIRESNYGNLNKISWARSSRTDKGVHSLATTITMKMEIPENAWKDDLYGMVLAK 170

Query: 607 KLNVHLPYNIRVFSVLPVSQDFDARKKCISRKYTYLLPAEVIGINENSLPEEIENCIAKF 428
            +N +LP +IRV S+LP  + FD R++C  RKY+YLLPAEVIGI  +    EI++ I+ F
Sbjct: 171 HVNSYLPDSIRVLSILPAQKSFDPRRECDIRKYSYLLPAEVIGIKSHFSMAEIDDHISDF 230

Query: 427 RDILSSFEGRHPFHNYTVRAQYRK---SKLNTLSKRPKSQVAEASDDETSKLKTDDDLFE 257
            +IL++FEG HPFHNYTVR++YR+   +K   +SKR +S         TS   ++++  E
Sbjct: 231 NNILNAFEGDHPFHNYTVRSKYRRKYPTKNGHVSKRARSSWG------TSASGSEENHVE 284

Query: 256 IDESREPEMQVLDDNAXXXXXXXXXXXXXXXXIVTTTEGSENIVPPLQARWLHEPDMHDK 77
           + ++   E  + D N                      + S N+  PL+ARWLHEPD  D+
Sbjct: 285 LSQN-SLESSICDLNGDILK-----------------DQSSNL--PLRARWLHEPDETDR 324

Query: 76  LSAAHFRRILSFTCSDLQ 23
           + AAHFR+I   +C  L+
Sbjct: 325 IGAAHFRKIFRCSCGKLE 342


>gb|ESW14065.1| hypothetical protein PHAVU_008G250100g [Phaseolus vulgaris]
          Length = 507

 Score =  217 bits (553), Expect = 3e-54
 Identities = 117/264 (44%), Positives = 163/264 (61%), Gaps = 2/264 (0%)
 Frame = -3

Query: 787 AIFKAGGMLESNFGNLNKVGWTRSSRTDKGVHSLATVISMKLEIPIDAWVGDLDGLVLAD 608
           A+FKAGG+ ESNFG+L K+ W RSSRTDKGVHSLAT++S K+EIP +AW GD  G  LA+
Sbjct: 95  AVFKAGGIRESNFGDLQKIKWARSSRTDKGVHSLATIVSFKMEIPENAWNGDPYGFGLAN 154

Query: 607 KLNVHLPYNIRVFSVLPVSQDFDARKKCISRKYTYLLPAEVIGINENSLPEEIENCIAKF 428
            +N +LP++I+V S+LP  + FD RK+C  RKY+YLLPAE+IGI  +S  +EI+  I++F
Sbjct: 155 YVNSYLPFDIKVLSILPSQRSFDPRKECAWRKYSYLLPAEIIGIQSDSSNDEIDYHISEF 214

Query: 427 RDILSSFEGRHPFHNYTVRAQYRKSKLNTLSKRPKSQVAEASDDETSKLKTDD--DLFEI 254
            DIL+ FEG HPFHNYT RA+YRK   N   K+  S+  E      S+ +  D  + FEI
Sbjct: 215 HDILNVFEGEHPFHNYTARAKYRKHFPN---KQLSSKSVERLPPYESECEYSDEEENFEI 271

Query: 253 DESREPEMQVLDDNAXXXXXXXXXXXXXXXXIVTTTEGSENIVPPLQARWLHEPDMHDKL 74
           DE+    ++                            G ++ +   +ARWL+EPD  D+L
Sbjct: 272 DEAFTENIECRSQKCSETHNFGKPVVGSSNKNGNRLPGQDSRL-VARARWLYEPDEADRL 330

Query: 73  SAAHFRRILSFTCSDLQSIKNQRY 2
           SA+HFR++   +C  L++     Y
Sbjct: 331 SASHFRKVFQCSCGKLETSLGYNY 354


>ref|XP_004490688.1| PREDICTED: putative tRNA pseudouridine synthase-like [Cicer
           arietinum]
          Length = 483

 Score =  217 bits (552), Expect = 4e-54
 Identities = 118/267 (44%), Positives = 165/267 (61%), Gaps = 10/267 (3%)
 Frame = -3

Query: 787 AIFKAGGMLESNFGNLNKVGWTRSSRTDKGVHSLATVISMKLEIPIDAWVGDLDGLVLAD 608
           AIFK GG+ +SNFG+L+K+ W RSSRTDKGVHSLAT+IS K+EIP +AW GD  G+ LA+
Sbjct: 86  AIFKVGGIRDSNFGDLDKINWGRSSRTDKGVHSLATMISFKMEIPENAWKGDDYGIELAN 145

Query: 607 KLNVHLPYNIRVFSVLPVSQDFDARKKCISRKYTYLLPAEVIGINENSLPEEIENCIAKF 428
            +N +LP +IRVFS+LP ++ FD R++C  RKY+YLLPA++IGI  +   +EI+  I++F
Sbjct: 146 HINSYLPNSIRVFSILPSTKRFDPRRECNLRKYSYLLPADIIGIQSHFSEDEIDFHISEF 205

Query: 427 RDILSSFEGRHPFHNYTVRAQYRKSKLNTLSKRP----------KSQVAEASDDETSKLK 278
             IL  FEG HPFHNYTVR+ YRK   N   K P           S +  A D E+ +  
Sbjct: 206 NSILGVFEGDHPFHNYTVRSIYRKK--NHARKSPGNGGMSNRTESSSLISACDSESEESD 263

Query: 277 TDDDLFEIDESREPEMQVLDDNAXXXXXXXXXXXXXXXXIVTTTEGSENIVPPLQARWLH 98
            DD L + ++S +P+     D+                         +N    ++ARWLH
Sbjct: 264 ADDSLSDGEQSHKPQESSEFDSL----------------------NGQNSSLGIRARWLH 301

Query: 97  EPDMHDKLSAAHFRRILSFTCSDLQSI 17
           EPD  D+L+A+HFR+IL  +C  L+++
Sbjct: 302 EPDDADRLNASHFRKILCCSCGKLETL 328


>gb|ESW14066.1| hypothetical protein PHAVU_008G250200g [Phaseolus vulgaris]
          Length = 512

 Score =  216 bits (551), Expect = 5e-54
 Identities = 121/265 (45%), Positives = 161/265 (60%), Gaps = 3/265 (1%)
 Frame = -3

Query: 787 AIFKAGGMLESNFGNLNKVGWTRSSRTDKGVHSLATVISMKLEIPIDAWVGDLDGLVLAD 608
           AIF AGGM +SNFG+LNKV W RSSRTDKGVHSLATVIS K+EIP +AW GD  G+ LA+
Sbjct: 105 AIFTAGGMRDSNFGDLNKVKWGRSSRTDKGVHSLATVISFKMEIPENAWKGDDYGIALAN 164

Query: 607 KLNVHLPYNIRVFSVLPVSQDFDARKKCISRKYTYLLPAEVIGINENSLPEEIENCIAKF 428
           ++N +LPY IRVFS+LP ++ FD R++C  RKY+YLLPA++IGI  +   +EI+  I++F
Sbjct: 165 RINSYLPYTIRVFSILPSTKRFDPRRECNLRKYSYLLPADIIGIQSHFSKDEIDFHISEF 224

Query: 427 RDILSSFEGRHPFHNYTVRAQYRKSKLNTLSKRPKSQVAEAS-DDETSKLKTDDDLFEID 251
             IL+ FEG HPFHNYTVR++YRK          K QV ++S  D  S       L    
Sbjct: 225 NSILNVFEGEHPFHNYTVRSKYRK----------KYQVRQSSGSDVMSDRLGSSSLASGF 274

Query: 250 ESREPEMQVLD--DNAXXXXXXXXXXXXXXXXIVTTTEGSENIVPPLQARWLHEPDMHDK 77
           ES   +    D  D +                  +    S+N    ++ARWLHEPD  D+
Sbjct: 275 ESESDDSDDYDFVDGSPTTLSDKEESHKPPESSESNGLSSQNSNVVVRARWLHEPDEKDR 334

Query: 76  LSAAHFRRILSFTCSDLQSIKNQRY 2
           L+A+HFR +   +C  L++     Y
Sbjct: 335 LNASHFRNVFRCSCGKLETSMGYDY 359