BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ephedra25_contig00009540
         (1297 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_006856950.1| hypothetical protein AMTR_s00451p00003410, p...    64   2e-07
ref|XP_003573820.1| PREDICTED: pentatricopeptide repeat-containi...    64   2e-07
ref|XP_006840107.1| hypothetical protein AMTR_s00224p00011500 [A...    63   2e-07
ref|XP_006494588.1| PREDICTED: pentatricopeptide repeat-containi...    61   9e-07
ref|XP_006494587.1| PREDICTED: pentatricopeptide repeat-containi...    61   9e-07
ref|XP_006494589.1| PREDICTED: pentatricopeptide repeat-containi...    60   3e-06
emb|CAN69936.1| hypothetical protein VITISV_038780 [Vitis vinifera]    59   3e-06
ref|XP_004505826.1| PREDICTED: pentatricopeptide repeat-containi...    59   4e-06
ref|XP_002276432.2| PREDICTED: pentatricopeptide repeat-containi...    59   4e-06
emb|CBI37948.3| unnamed protein product [Vitis vinifera]               59   4e-06
ref|XP_006587670.1| PREDICTED: pentatricopeptide repeat-containi...    59   6e-06
ref|XP_006662227.1| PREDICTED: pentatricopeptide repeat-containi...    58   8e-06
ref|XP_006423563.1| hypothetical protein CICLE_v10027915mg [Citr...    58   8e-06
gb|EXB36850.1| hypothetical protein L484_003235 [Morus notabilis]      58   1e-05
gb|ESW03716.1| hypothetical protein PHAVU_011G0363001g, partial ...    58   1e-05

>ref|XP_006856950.1| hypothetical protein AMTR_s00451p00003410, partial [Amborella
           trichopoda] gi|548860954|gb|ERN18417.1| hypothetical
           protein AMTR_s00451p00003410, partial [Amborella
           trichopoda]
          Length = 927

 Score = 63.5 bits (153), Expect = 2e-07
 Identities = 36/97 (37%), Positives = 52/97 (53%), Gaps = 10/97 (10%)
 Frame = -1

Query: 262 LIESYRMMSNDRSRKQKKNHASHDSLVNLNANLKDL-------LPIDSTK---DASEYLS 113
           ++  Y    + ++RK++ N          N+   D+       LP ++ K   D SEYL 
Sbjct: 417 VLSPYDKQGSVKARKKRNNGIGFTVDKEENSVQNDVGSFPPSRLPNETEKEKDDLSEYLR 476

Query: 112 YYNYWLRVGRLKDCIALLENMKKSGCLDMDKVYHAKF 2
            YN WL+ GRL DCI LLE+M +   LDMDK+YH +F
Sbjct: 477 MYNRWLKHGRLNDCIQLLESMDEKALLDMDKIYHTRF 513


>ref|XP_003573820.1| PREDICTED: pentatricopeptide repeat-containing protein At4g34830,
           chloroplastic-like [Brachypodium distachyon]
          Length = 1084

 Score = 63.5 bits (153), Expect = 2e-07
 Identities = 35/87 (40%), Positives = 49/87 (56%), Gaps = 14/87 (16%)
 Frame = -1

Query: 220 KQKKNHASHDSLVNLN---------ANLKDLLP-----IDSTKDASEYLSYYNYWLRVGR 83
           KQKK    HD+   +           NL++ +P     ++ T D S+Y+  YN  L  GR
Sbjct: 346 KQKKAVKDHDAAKTIGWTISEILSKENLENFIPAKTLGLNGTVDTSDYIRRYNSSLMDGR 405

Query: 82  LKDCIALLENMKKSGCLDMDKVYHAKF 2
           LKDC+ LLENM++ G LDM K++HA F
Sbjct: 406 LKDCVDLLENMEQKGLLDMKKIHHASF 432


>ref|XP_006840107.1| hypothetical protein AMTR_s00224p00011500 [Amborella trichopoda]
           gi|548841763|gb|ERN01782.1| hypothetical protein
           AMTR_s00224p00011500 [Amborella trichopoda]
          Length = 1185

 Score = 63.2 bits (152), Expect = 2e-07
 Identities = 36/97 (37%), Positives = 52/97 (53%), Gaps = 10/97 (10%)
 Frame = -1

Query: 262 LIESYRMMSNDRSRKQKKNHASHDSLVNLNANLKDL-------LPIDSTK---DASEYLS 113
           ++  Y    + ++RK++ N          N+   D+       LP +S K   D SEYL 
Sbjct: 417 VLSPYDKQGSVKARKKRNNGIGFTVDKEENSVQNDVGSFPPSRLPNESEKEKDDLSEYLR 476

Query: 112 YYNYWLRVGRLKDCIALLENMKKSGCLDMDKVYHAKF 2
            YN WL+ GRL DCI LLE++ +   LDMDK+YH +F
Sbjct: 477 MYNRWLKHGRLNDCIQLLESIDEKALLDMDKIYHTRF 513


>ref|XP_006494588.1| PREDICTED: pentatricopeptide repeat-containing protein MRL1,
           chloroplastic-like isoform X2 [Citrus sinensis]
          Length = 923

 Score = 61.2 bits (147), Expect = 9e-07
 Identities = 35/85 (41%), Positives = 54/85 (63%), Gaps = 9/85 (10%)
 Frame = -1

Query: 229 RSRKQKKNHASHDSLVNLNANL-KDLL--PIDSTK------DASEYLSYYNYWLRVGRLK 77
           ++R++ +N   ++  +NL  ++ K++L  P  + K      D SE L  YN  +R GR+ 
Sbjct: 342 KARRRIRNFPRNNERINLMQDVGKNMLQFPYPNGKHANYAHDVSEQLHSYNRLIRQGRIS 401

Query: 76  DCIALLENMKKSGCLDMDKVYHAKF 2
           DCI LLE+M++ G LDMDKVYHA+F
Sbjct: 402 DCIDLLEDMERKGLLDMDKVYHARF 426


>ref|XP_006494587.1| PREDICTED: pentatricopeptide repeat-containing protein MRL1,
           chloroplastic-like isoform X1 [Citrus sinensis]
          Length = 1072

 Score = 61.2 bits (147), Expect = 9e-07
 Identities = 35/85 (41%), Positives = 54/85 (63%), Gaps = 9/85 (10%)
 Frame = -1

Query: 229 RSRKQKKNHASHDSLVNLNANL-KDLL--PIDSTK------DASEYLSYYNYWLRVGRLK 77
           ++R++ +N   ++  +NL  ++ K++L  P  + K      D SE L  YN  +R GR+ 
Sbjct: 342 KARRRIRNFPRNNERINLMQDVGKNMLQFPYPNGKHANYAHDVSEQLHSYNRLIRQGRIS 401

Query: 76  DCIALLENMKKSGCLDMDKVYHAKF 2
           DCI LLE+M++ G LDMDKVYHA+F
Sbjct: 402 DCIDLLEDMERKGLLDMDKVYHARF 426


>ref|XP_006494589.1| PREDICTED: pentatricopeptide repeat-containing protein MRL1,
           chloroplastic-like isoform X3 [Citrus sinensis]
          Length = 713

 Score = 59.7 bits (143), Expect = 3e-06
 Identities = 27/44 (61%), Positives = 33/44 (75%)
 Frame = -1

Query: 133 DASEYLSYYNYWLRVGRLKDCIALLENMKKSGCLDMDKVYHAKF 2
           D SE L  YN  +R GR+ DCI LLE+M++ G LDMDKVYHA+F
Sbjct: 24  DVSEQLHSYNRLIRQGRISDCIDLLEDMERKGLLDMDKVYHARF 67


>emb|CAN69936.1| hypothetical protein VITISV_038780 [Vitis vinifera]
          Length = 1206

 Score = 59.3 bits (142), Expect = 3e-06
 Identities = 29/42 (69%), Positives = 31/42 (73%)
 Frame = -1

Query: 127 SEYLSYYNYWLRVGRLKDCIALLENMKKSGCLDMDKVYHAKF 2
           SE  S YN  L  GRL DCI LLE+M+K G LDMDKVYHAKF
Sbjct: 426 SEKFSAYNRXLSEGRLSDCIQLLEDMEKMGLLDMDKVYHAKF 467


>ref|XP_004505826.1| PREDICTED: pentatricopeptide repeat-containing protein At4g34830,
           chloroplastic-like [Cicer arietinum]
          Length = 1113

 Score = 58.9 bits (141), Expect = 4e-06
 Identities = 30/78 (38%), Positives = 47/78 (60%), Gaps = 1/78 (1%)
 Frame = -1

Query: 232 DRSRKQKKNHASHDSLVNLNANLKDLLPIDSTK-DASEYLSYYNYWLRVGRLKDCIALLE 56
           D +  +    +SH   V+++     +   D  K D S++LS Y+Y L+ GRL++C+ LL+
Sbjct: 388 DHNSNKVLPQSSHSVRVHVDQKKDKIRVHDGQKIDPSKHLSKYSYLLKAGRLRECVELLK 447

Query: 55  NMKKSGCLDMDKVYHAKF 2
           +M+  G LDM K YHAKF
Sbjct: 448 DMEMKGLLDMTKAYHAKF 465


>ref|XP_002276432.2| PREDICTED: pentatricopeptide repeat-containing protein At4g34830,
           chloroplastic-like [Vitis vinifera]
          Length = 1115

 Score = 58.9 bits (141), Expect = 4e-06
 Identities = 29/42 (69%), Positives = 31/42 (73%)
 Frame = -1

Query: 127 SEYLSYYNYWLRVGRLKDCIALLENMKKSGCLDMDKVYHAKF 2
           SE  S YN  L  GRL DCI LLE+M+K G LDMDKVYHAKF
Sbjct: 426 SEKFSAYNRLLSEGRLSDCIQLLEDMEKMGLLDMDKVYHAKF 467


>emb|CBI37948.3| unnamed protein product [Vitis vinifera]
          Length = 1550

 Score = 58.9 bits (141), Expect = 4e-06
 Identities = 29/42 (69%), Positives = 31/42 (73%)
 Frame = -1

Query: 127 SEYLSYYNYWLRVGRLKDCIALLENMKKSGCLDMDKVYHAKF 2
           SE  S YN  L  GRL DCI LLE+M+K G LDMDKVYHAKF
Sbjct: 861 SEKFSAYNRLLSEGRLSDCIQLLEDMEKMGLLDMDKVYHAKF 902


>ref|XP_006587670.1| PREDICTED: pentatricopeptide repeat-containing protein MRL1,
           chloroplastic-like [Glycine max]
          Length = 1150

 Score = 58.5 bits (140), Expect = 6e-06
 Identities = 34/86 (39%), Positives = 48/86 (55%), Gaps = 12/86 (13%)
 Frame = -1

Query: 223 RKQKKNHASHDSLVNLNANLKDL-LPIDSTK-----------DASEYLSYYNYWLRVGRL 80
           R+ ++N   H+S + L  N   + + +D T            D SE LS YN  L+V RL
Sbjct: 408 REMERNSMDHNSKIFLPLNAHSINVHVDQTNGQFRVHDGPKMDPSELLSKYNNLLKVERL 467

Query: 79  KDCIALLENMKKSGCLDMDKVYHAKF 2
            +C+ LL++M+  G LDM KVYHAKF
Sbjct: 468 HECVELLKDMETKGLLDMTKVYHAKF 493


>ref|XP_006662227.1| PREDICTED: pentatricopeptide repeat-containing protein MRL1,
           chloroplastic-like [Oryza brachyantha]
          Length = 967

 Score = 58.2 bits (139), Expect = 8e-06
 Identities = 35/87 (40%), Positives = 49/87 (56%), Gaps = 14/87 (16%)
 Frame = -1

Query: 220 KQKKNHASHD-------SLVNL-------NANLKDLLPIDSTKDASEYLSYYNYWLRVGR 83
           KQKK    HD       S+ NL       N+   + + +  TKD S+YL  YN  L  GR
Sbjct: 228 KQKKAVNGHDDAKLIGWSISNLLNKENPENSTSANRVGLSGTKDVSDYLRRYNSLLIDGR 287

Query: 82  LKDCIALLENMKKSGCLDMDKVYHAKF 2
           LKD + LLE++++ G LDM+K++HA F
Sbjct: 288 LKDAVDLLESVEQKGLLDMNKIHHASF 314


>ref|XP_006423563.1| hypothetical protein CICLE_v10027915mg [Citrus clementina]
           gi|557525497|gb|ESR36803.1| hypothetical protein
           CICLE_v10027915mg [Citrus clementina]
          Length = 713

 Score = 58.2 bits (139), Expect = 8e-06
 Identities = 26/44 (59%), Positives = 33/44 (75%)
 Frame = -1

Query: 133 DASEYLSYYNYWLRVGRLKDCIALLENMKKSGCLDMDKVYHAKF 2
           D SE L  YN  +R GR+ +CI LLE+M++ G LDMDKVYHA+F
Sbjct: 24  DVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARF 67


>gb|EXB36850.1| hypothetical protein L484_003235 [Morus notabilis]
          Length = 1125

 Score = 57.8 bits (138), Expect = 1e-05
 Identities = 30/71 (42%), Positives = 42/71 (59%)
 Frame = -1

Query: 214 KKNHASHDSLVNLNANLKDLLPIDSTKDASEYLSYYNYWLRVGRLKDCIALLENMKKSGC 35
           + NH +   L  LN      L ++     SE +S YN  ++ GRL D + LLE+M++ G 
Sbjct: 412 QNNHKAPAKLTRLNG-----LDVEQKHHPSEQISTYNRLVKDGRLSDAVELLEDMERRGL 466

Query: 34  LDMDKVYHAKF 2
           LDM+KVYHAKF
Sbjct: 467 LDMNKVYHAKF 477


>gb|ESW03716.1| hypothetical protein PHAVU_011G0363001g, partial [Phaseolus
           vulgaris]
          Length = 1014

 Score = 57.8 bits (138), Expect = 1e-05
 Identities = 46/152 (30%), Positives = 67/152 (44%), Gaps = 11/152 (7%)
 Frame = -1

Query: 424 SDKVTNKLDIGSLEKTKDVPNDQQEIDQGQSSAKVHFINKTTLQNAEAKFRNPILIESYR 245
           S  V   + +     + D+P    E  +G +    H  +   LQ+     R        R
Sbjct: 333 SPSVMGNVTLKGTGLSTDIPLQNAEHVKGAAEVSSHK-DGYPLQHVSKNLRRG------R 385

Query: 244 MMSNDRSRKQKKNHASHDSLVNLNANLKDLLPIDSTKDA-----------SEYLSYYNYW 98
             S DR R     +  ++++   N  L   + ID   D            SE+LS YN  
Sbjct: 386 SFSGDRERTNMDYN--NNTVFPQNTTLSMKMHIDLKNDQIMVHDDQKNVPSEHLSKYNNL 443

Query: 97  LRVGRLKDCIALLENMKKSGCLDMDKVYHAKF 2
           L+VGRL +C+ LL++M+  G LDM KVYHAKF
Sbjct: 444 LKVGRLHECVELLKHMETKGLLDMTKVYHAKF 475