BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ephedra25_contig00009017
         (584 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_005310521.1| protein RnhA [Paenibacillus mucilaginosus 30...    58   2e-06
ref|YP_004638949.1| protein RnhA [Paenibacillus mucilaginosus KN...    58   2e-06
ref|WP_022794665.1| ribonuclease H [Marinococcus halotolerans]         57   3e-06
gb|EWC92701.1| caulimovirus viroplasmin [Porphyromonas catoniae ...    57   3e-06
ref|WP_005467675.1| putative ribonuclease H [Porphyromonas caton...    57   3e-06
ref|WP_009432255.1| ribonuclease H [Porphyromonas sp. oral taxon...    57   5e-06
ref|WP_021667318.1| putative ribonuclease H [Porphyromonas sp. o...    56   8e-06

>ref|YP_005310521.1| protein RnhA [Paenibacillus mucilaginosus 3016]
           gi|386720956|ref|YP_006187281.1| ribonuclease H
           [Paenibacillus mucilaginosus K02]
           gi|504176351|ref|WP_014368275.1| ribonuclease H
           [Paenibacillus mucilaginosus]
           gi|378567062|gb|AFC27372.1| RnhA [Paenibacillus
           mucilaginosus 3016] gi|384088080|gb|AFH59516.1|
           ribonuclease H [Paenibacillus mucilaginosus K02]
          Length = 226

 Score = 57.8 bits (138), Expect = 2e-06
 Identities = 24/40 (60%), Positives = 29/40 (72%)
 Frame = +1

Query: 451 WYVVFVGRQPGVYNTWAECDEQRCGFSKPKFRKFDSLEEA 570
           WYVV+ GRQPGVY TWAEC  Q  GF + KF+ ++S  EA
Sbjct: 6   WYVVWEGRQPGVYKTWAECQAQTSGFPQAKFKAYESEAEA 45


>ref|YP_004638949.1| protein RnhA [Paenibacillus mucilaginosus KNP414]
           gi|503680169|ref|WP_013914245.1| ribonuclease H
           [Paenibacillus mucilaginosus]
           gi|336295976|gb|AEI39079.1| RnhA [Paenibacillus
           mucilaginosus KNP414]
          Length = 226

 Score = 57.8 bits (138), Expect = 2e-06
 Identities = 24/40 (60%), Positives = 29/40 (72%)
 Frame = +1

Query: 451 WYVVFVGRQPGVYNTWAECDEQRCGFSKPKFRKFDSLEEA 570
           WYVV+ GRQPGVY TWAEC  Q  GF + KF+ ++S  EA
Sbjct: 6   WYVVWEGRQPGVYKTWAECQAQTSGFPQAKFKAYESEAEA 45


>ref|WP_022794665.1| ribonuclease H [Marinococcus halotolerans]
          Length = 214

 Score = 57.4 bits (137), Expect = 3e-06
 Identities = 23/47 (48%), Positives = 33/47 (70%)
 Frame = +1

Query: 430 RHSMVRYWYVVFVGRQPGVYNTWAECDEQRCGFSKPKFRKFDSLEEA 570
           R    + WYVV+ G++PG+Y+TWAEC++Q  GF   +F+ F S EEA
Sbjct: 17  RQMAKKKWYVVWKGKKPGIYSTWAECEKQVKGFKGARFKSFSSYEEA 63


>gb|EWC92701.1| caulimovirus viroplasmin [Porphyromonas catoniae ATCC 51270]
          Length = 208

 Score = 57.0 bits (136), Expect = 3e-06
 Identities = 23/44 (52%), Positives = 28/44 (63%)
 Frame = +1

Query: 451 WYVVFVGRQPGVYNTWAECDEQRCGFSKPKFRKFDSLEEAVFRY 582
           WYVV+ G +PGVY TW+EC  Q  G+   KF+ FDS  EA   Y
Sbjct: 7   WYVVWAGHEPGVYETWSECQAQTTGYPNAKFKAFDSEREARMAY 50


>ref|WP_005467675.1| putative ribonuclease H [Porphyromonas catoniae]
           gi|429157648|gb|EKY00229.1| putative ribonuclease H
           [Porphyromonas catoniae F0037]
          Length = 208

 Score = 57.0 bits (136), Expect = 3e-06
 Identities = 23/44 (52%), Positives = 28/44 (63%)
 Frame = +1

Query: 451 WYVVFVGRQPGVYNTWAECDEQRCGFSKPKFRKFDSLEEAVFRY 582
           WYVV+ G +PGVY TW+EC  Q  G+   KF+ FDS  EA   Y
Sbjct: 7   WYVVWAGHEPGVYETWSECQAQTTGYPNAKFKAFDSEREARMAY 50


>ref|WP_009432255.1| ribonuclease H [Porphyromonas sp. oral taxon 279]
           gi|402268566|gb|EJU17933.1| caulimovirus viroplasmin
           [Porphyromonas sp. oral taxon 279 str. F0450]
          Length = 251

 Score = 56.6 bits (135), Expect = 5e-06
 Identities = 23/44 (52%), Positives = 29/44 (65%)
 Frame = +1

Query: 451 WYVVFVGRQPGVYNTWAECDEQRCGFSKPKFRKFDSLEEAVFRY 582
           WYVV+ G +PGVY TWAEC  Q  G+ K  F+ F+S  EA+  Y
Sbjct: 49  WYVVWAGHEPGVYETWAECQRQTQGYPKALFKSFESRSEALRAY 92


>ref|WP_021667318.1| putative ribonuclease H [Porphyromonas sp. oral taxon 278]
           gi|543965280|gb|ERJ71989.1| putative ribonuclease H
           [Porphyromonas sp. oral taxon 278 str. W7784]
          Length = 209

 Score = 55.8 bits (133), Expect = 8e-06
 Identities = 22/46 (47%), Positives = 29/46 (63%)
 Frame = +1

Query: 445 RYWYVVFVGRQPGVYNTWAECDEQRCGFSKPKFRKFDSLEEAVFRY 582
           R WYVV+ G +PGVY TW EC  Q  G+  P F+ F+S  +A+  Y
Sbjct: 5   RKWYVVWAGHEPGVYETWVECQRQTQGYPSPVFKSFESHSDALRAY 50