BLASTX nr result
ID: Ephedra25_contig00004793
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Ephedra25_contig00004793
(3860 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_006849794.1| hypothetical protein AMTR_s00176p00039530 [A... 970 0.0
ref|XP_003518619.1| PREDICTED: RNA-dependent RNA polymerase 1-li... 946 0.0
ref|XP_006469265.1| PREDICTED: RNA-dependent RNA polymerase 1-li... 939 0.0
ref|XP_002284914.1| PREDICTED: RNA-dependent RNA polymerase 1 [V... 939 0.0
ref|XP_006366108.1| PREDICTED: RNA-dependent RNA polymerase 1-li... 936 0.0
ref|NP_001234319.1| RNA-directed RNA polymerase [Solanum lycoper... 936 0.0
ref|NP_001267692.1| RNA-dependent RNA polymerase 1-like [Cucumis... 936 0.0
gb|EOY01384.1| RNA-dependent RNA polymerase 1 isoform 1 [Theobro... 935 0.0
gb|ABO92977.1| putative RNA-dependent RNA-polymerase [Solanum tu... 935 0.0
ref|XP_006306626.1| hypothetical protein CARUB_v10008144mg [Caps... 934 0.0
ref|XP_002281315.1| PREDICTED: RNA-dependent RNA polymerase 1-li... 932 0.0
gb|ABV24845.1| RNA-dependent RNA polymerase [Nicotiana glutinosa... 931 0.0
ref|NP_172932.1| RNA-dependent RNA polymerase 1 [Arabidopsis tha... 927 0.0
ref|XP_002892830.1| RNA-dependent RNA polymerase 1 [Arabidopsis ... 927 0.0
ref|XP_006366109.1| PREDICTED: RNA-dependent RNA polymerase 1-li... 926 0.0
gb|EXB53859.1| RNA-dependent RNA polymerase 1 [Morus notabilis] 926 0.0
ref|XP_004297425.1| PREDICTED: RNA-dependent RNA polymerase 1-li... 926 0.0
gb|AAN64409.1| RNA-dependent RNA polymerase 1 [Arabidopsis thali... 924 0.0
ref|XP_002311536.1| RNA-directed RNA Polymerase family protein [... 922 0.0
emb|CAA09697.1| RNA-directed RNA polymerase [Nicotiana tabacum] 920 0.0
>ref|XP_006849794.1| hypothetical protein AMTR_s00176p00039530 [Amborella trichopoda]
gi|548853371|gb|ERN11375.1| hypothetical protein
AMTR_s00176p00039530 [Amborella trichopoda]
Length = 1210
Score = 970 bits (2507), Expect = 0.0
Identities = 549/1132 (48%), Positives = 721/1132 (63%), Gaps = 27/1132 (2%)
Frame = +2
Query: 152 GMATES-RTVKITHIPLGTDANQLTTLLEGILQEKGCVYSAKILKQTNPRHVYAHAIVQL 328
G+++E RTV+++ P GT A + LE I G VY KI + + AIVQ
Sbjct: 69 GVSSEGGRTVQVSGFPQGTCAEAVKKFLESITGF-GTVYHLKIRIHKSKPNSRVFAIVQF 127
Query: 329 DRSFLARKLCTTLP-------ASTLMQATVLPRDMVSKPRESTVHIATRRLHFGCQVSHN 487
S A + + P ++ + + D+V PR + + + +L+FG Q+S
Sbjct: 128 TTSKSAEVIYSLAPQPKSLYFGNSYVIVRYMENDIVPNPRVTYHVLESIQLYFGNQISEE 187
Query: 488 RYAVLWTCDSDVQFEFASDIKKLFIELTDRGISYRLVLSFGNVRYMHRYSTDSSRRTYLV 667
+A+LW+ +++V+ EF +KK+F L G+ Y+L L + N+ + + YLV
Sbjct: 188 SFAILWS-NTNVKVEFGFGLKKIFFYLAHTGVDYKLDLYYENIWQIQLRRPGTEGTRYLV 246
Query: 668 IQVYCAPKIYYKEPS--SDMGDGLWIAEFFKFGSDNQWIRTTDFTRNFSIGNSTSICLEL 841
+Q+ AP+I+ K S SD+ D + ++K D QW+R+ DFT + SIG S+S+CL L
Sbjct: 247 LQMQGAPRIFQKPLSFSSDIYDSP-LFNYYKDFPDEQWVRSIDFTPSCSIGQSSSLCLAL 305
Query: 842 LDGAKDAVIKNSFYNYKDIRENLSLHINXXXXXXXRLVPSXXXXXXXXXXYKILFQVNAL 1021
+G + I+ +F YK+I +L LVP YKILF+VN+L
Sbjct: 306 PNGTRIPNIRENFAYYKEIGGAFNLKTGSSFSHSLHLVPIVHPPDQIKLPYKILFRVNSL 365
Query: 1022 VQEGILSWPALGREFFRLLEPKSEEYVGRILFALQEISYS--GPTYTPEKSLKKIIYDKK 1195
VQ G L P L EF+ LL +V R L + ++ P ++ KK Y
Sbjct: 366 VQNGFLVGPTLDTEFYNLLNGLPSPFVERSLEDISRLTNCCLEPAKWLQEQYKK--YRNL 423
Query: 1196 ARRYADFNTYLDDGLMRVHRVQVTPTKVYLFGPEVDVSNRVIRQFSEYIDDFIRVSFIDE 1375
RR + L+ GL+ VHRVQVTP+KVY +GPEV+VSNRV+RQFS YID+F+R+SFIDE
Sbjct: 424 PRRPSPAAISLEPGLVYVHRVQVTPSKVYFYGPEVNVSNRVLRQFSNYIDNFLRISFIDE 483
Query: 1376 DERQLFATDLCQKMPNG-EKKYTKLYLRILSXXXXXXXXXXXXFEFLAFSSSQLRESSLW 1552
D + +TDL ++M +G E+K+T +Y R+LS FEFLAFSSSQLR++S W
Sbjct: 484 DFGSIRSTDLSKRMASGAEEKHTTVYGRVLSTLKNGIVIGDKKFEFLAFSSSQLRDNSAW 543
Query: 1553 MFASNEQVTAETIRAWMGNFLSIRNVAKCAARMGQCFSSSKKTLCVYESEVEDCNDITIE 1732
MF+ + +TA IR WMG+F IRNVAKCAARMGQ F SS +TL V EVE +DI
Sbjct: 544 MFSPIDGITAANIRQWMGDFSGIRNVAKCAARMGQSFGSSTETLNVKPEEVERISDIK-- 601
Query: 1733 RDSDSYVFSDGIGKISVALAEELAVHCGC-DYVPSAFQIRYGGYKGVVAMDPTSSYKLSL 1909
+ YVFSDGIGKIS+ A+++A+ CGC + PSAFQIRYGGYKGVVA+DPTS YKLSL
Sbjct: 602 --NGKYVFSDGIGKISLEFAKKVALKCGCSEKTPSAFQIRYGGYKGVVAVDPTSRYKLSL 659
Query: 1910 RPSMRKFDSENRNVDVLSWTKFRPCFLNRQIITLLSTLGVRDQRFENLQQEDINRLDLIL 2089
R SMRK+ S N +DVL+++KF+PCFLNRQ+ITLLSTLGV+D FE Q++ +++LD IL
Sbjct: 660 RGSMRKYSSNNTKLDVLAYSKFQPCFLNRQVITLLSTLGVQDNVFETKQKDAVSQLDKIL 719
Query: 2090 DHKDMALEVLQIMSGGENHNVIINMLRCGYSPKDEPYLSMVLHAFRAAKLLELKHKARIF 2269
+ A E L++MS GEN NV+ ML CGY P EP+LSM+L FR KL ELK K RIF
Sbjct: 720 VDPESAFEALELMSPGENVNVLKEMLFCGYLPDSEPFLSMMLQTFRGLKLSELKTKTRIF 779
Query: 2270 VPKGRCLMGCLDEYRILEYGEIFVQVTE--PRSSLHFGTTGNQTS---IRKRIITGTVIV 2434
+P GR +MGCLDE ILEYG++FVQ + R FG + S R R++ G VIV
Sbjct: 780 IPNGRSMMGCLDETGILEYGQVFVQFSAIGNRRLHEFGLSKINESGSDQRVRVVVGKVIV 839
Query: 2435 AKNPCLHPGDVRILRAVDDPRLHHLVDCVVFPQKGKRPHPNECSGSDLDGDLYFVCWDES 2614
AKNPCLHPGDVRIL A+D P LHH+V+CVVFPQKGKRPHPNECSGSDLDGD+YFV WD
Sbjct: 840 AKNPCLHPGDVRILTAIDVPALHHMVNCVVFPQKGKRPHPNECSGSDLDGDIYFVSWDPM 899
Query: 2615 LIPPDVDMPMDYAAPPQISLNRPVTIEDIQEFFANYMLNDSIGIISARHTVFADSDQEMA 2794
LIP PM+Y P L+ VTIE+I+E+F NYM+NDS+GII+ HTVFAD + A
Sbjct: 900 LIPCHQGTPMEYEPAPNNDLDHEVTIEEIEEYFTNYMINDSLGIIANAHTVFADKEPMKA 959
Query: 2795 RSDNCLKLAQLFTLAVDFPKTGVPAKIPSDLVPREYPDFMEKEDKPTYISKRVIGKLYRA 2974
S C+ LA LF++AVDFPKTGVPA IP L +EYPDFM+K DKPTY S+RVIGKL+R
Sbjct: 960 DSTPCVDLANLFSVAVDFPKTGVPADIPQHLYVKEYPDFMDKTDKPTYQSRRVIGKLFRE 1019
Query: 2975 VKDHATQSLTISSFTKEVAYKAYDRDLEVGAYKDYIDAAFVCKNLYDSSLLSIMHRYGIR 3154
VKD + I+SFTK VA K+YD D+EV ++ Y+D A K+ YD L +M YGI+
Sbjct: 1020 VKDLPPHTSAITSFTKSVALKSYDLDMEVDGFELYLDDAHWYKSEYDFKLAGLMDHYGIK 1079
Query: 3155 YEAEIVSGNIFSLSKFHGSKLSDVRELLLTEVKSLQRETRSWFDADVRELEANEYDL--- 3325
EAEIVSGNI SL+K +K D + L ++SL++E R WF ++ +Y L
Sbjct: 1080 TEAEIVSGNILSLAKSF-TKRRDAEAIALA-MRSLRKEVRGWFKEKRSVVDEGDYSLDDD 1137
Query: 3326 ----ASAWYHITYHPYYWG-YGENDDSDYRNPHLISFPWTVYDKLLRIKRNK 3466
ASAWYHITYHP YWG Y E D + H ISFPW +YDKL+ IKR++
Sbjct: 1138 VYAKASAWYHITYHPEYWGSYFEEDGRN--RAHFISFPWCIYDKLIHIKRHR 1187
>ref|XP_003518619.1| PREDICTED: RNA-dependent RNA polymerase 1-like isoform X1 [Glycine
max] gi|571439308|ref|XP_006574822.1| PREDICTED:
RNA-dependent RNA polymerase 1-like isoform X2 [Glycine
max] gi|571439310|ref|XP_006574823.1| PREDICTED:
RNA-dependent RNA polymerase 1-like isoform X3 [Glycine
max]
Length = 1125
Score = 946 bits (2446), Expect = 0.0
Identities = 532/1122 (47%), Positives = 713/1122 (63%), Gaps = 23/1122 (2%)
Frame = +2
Query: 170 RTVKITHIPLGTDANQLTTLLEGILQEKGCVYSAKILKQTNPRHVYAHAIVQLDR----- 334
+T+++ P + + + T +E E G V++ K L+ R A AI+Q
Sbjct: 3 KTIELYGFPTSVNVSDVKTFVEQYTGE-GTVFAIK-LRHGKGRVPRAFAIIQFTTANSAT 60
Query: 335 SFLARK---LCTTLPASTLMQATVLPRDMVSKPRESTVHIATRRLHFGCQVSHNRYAVLW 505
S ++R L T ++ ++A + RD+V +PR + +L FGCQ+S R++VLW
Sbjct: 61 SMMSRANNILRTLRYGTSYLKAREMERDIVPRPRVFLHSLDDVKLSFGCQISKGRFSVLW 120
Query: 506 TCDSDVQFEFASDIKKLFIELTDRGISYRLVLSFGNVRYMHRYSTDSSRRTYLVIQVYCA 685
DV F S ++K+ + + Y+L LS+ N+ + + + YL+IQ+ A
Sbjct: 121 K-KQDVIVNFGSGMRKMHFLFSHNNVQYKLELSYENIWKIELHRPRNETTRYLLIQLLGA 179
Query: 686 PKIYYKE-PSSDMGDGLWIAEFFKFGSDNQWIRTTDFTRNFSIGNSTSICLELLDGAKDA 862
P+++ + P+S + FFK D QWIR DFT IG S++ICLEL +G +
Sbjct: 180 PRVFENDVPTSTNIFDDPLFNFFKDAPDEQWIRAIDFTPESRIGQSSAICLELPNGRQLP 239
Query: 863 VIKNSFYNYKDIRENLSLHINXXXXXXXRLVPSXXXXXXXXXXYKILFQVNALVQEGILS 1042
+ +F Y++ +L LVP Y ILF+VN+LVQ L+
Sbjct: 240 NFRENFAYYEESERQYTLQTGVPFSQNWGLVPIVAPPLGVKISYDILFKVNSLVQHACLA 299
Query: 1043 WPALGREFFRLLEPKS--EEYVGRILFALQEISYSGP-TYTPEKSL----KKIIYDKKAR 1201
PAL +F+RL++P+ E++ +AL++I YS Y P K L K + K
Sbjct: 300 GPALDGDFYRLVDPRRMPREFIE---YALEKIYYSKEFCYEPTKWLTDQYKTYLESKNHP 356
Query: 1202 RYADFNTYLDDGLMRVHRVQVTPTKVYLFGPEVDVSNRVIRQFSEYIDDFIRVSFIDEDE 1381
R + LD GL+ V RVQ+TP KVY GPE++VSNRV+R F E+ID+F+RVSF+DE+
Sbjct: 357 RSPAIS--LDTGLVYVRRVQITPCKVYFCGPEMNVSNRVLRHFREHIDNFLRVSFVDEEL 414
Query: 1382 RQLFATDLCQKMPNGEKKYTKLYLRILSXXXXXXXXXXXXFEFLAFSSSQLRESSLWMFA 1561
+LF+TDL + N K T++Y RILS FEFLAFSSSQLRE+SLWMFA
Sbjct: 415 DKLFSTDLSSRSQN---KKTEIYTRILSILKNGIVVGDKKFEFLAFSSSQLRENSLWMFA 471
Query: 1562 SNEQ-VTAETIRAWMGNFLSIRNVAKCAARMGQCFSSSKKTLCVYESEVEDCNDIT-IER 1735
E TA IR WMGNF IRNVAK AAR+GQ F SS +TL V+ EVE D+ +
Sbjct: 472 PTETGCTAAYIRKWMGNFSQIRNVAKYAARLGQSFGSSTETLSVHRDEVEIIPDVKKLTY 531
Query: 1736 DSDSYVFSDGIGKISVALAEELAVHCGCDYVPSAFQIRYGGYKGVVAMDPTSSYKLSLRP 1915
D + YVFSDGIGKIS+ A+++A CG D PSAFQIRYGGYKGVVA+DP S YKLSLR
Sbjct: 532 DGNEYVFSDGIGKISLEFAQKVAKKCGYDCTPSAFQIRYGGYKGVVAVDPKSCYKLSLRK 591
Query: 1916 SMRKFDSENRNVDVLSWTKFRPCFLNRQIITLLSTLGVRDQRFENLQQEDINRLDLILDH 2095
SMRK+DS+N +DVL+ +KF+PC+LNRQ+I+LLSTLG++D FE Q+E +N+L+ IL
Sbjct: 592 SMRKYDSDNTKLDVLARSKFQPCYLNRQLISLLSTLGIKDDVFEKKQRETVNQLNTILTD 651
Query: 2096 KDMALEVLQIMSGGENHNVIINMLRCGYSPKDEPYLSMVLHAFRAAKLLELKHKARIFVP 2275
A EVL +MS GE NV+ ML CGY P +EP+LSM+L FRA+KLLEL+ K+RIF+P
Sbjct: 652 SLKAQEVLDLMSAGEITNVLKEMLICGYKPNEEPFLSMMLQTFRASKLLELRLKSRIFIP 711
Query: 2276 KGRCLMGCLDEYRILEYGEIFVQVTEPRSSLHFGTTGNQTSIRKRIITGTVIVAKNPCLH 2455
KGR +MGCLDE R LEYG++FVQ + R + + ++ G V+VAKNPCLH
Sbjct: 712 KGRAMMGCLDETRTLEYGQVFVQFSNNRLQNLSDDFFSYDLPKNYMVKGKVVVAKNPCLH 771
Query: 2456 PGDVRILRAVDDPRLHHLVDCVVFPQKGKRPHPNECSGSDLDGDLYFVCWDESLIPPDVD 2635
PGDVR+L+AVD P L+H+VDCVVFPQKG RPHPNECSGSDLDGD+YFVCWD LIP
Sbjct: 772 PGDVRVLQAVDVPDLYHMVDCVVFPQKGPRPHPNECSGSDLDGDIYFVCWDHELIPSRPI 831
Query: 2636 MPMDYAAPPQISLNRPVTIEDIQEFFANYMLNDSIGIISARHTVFADSDQEMARSDNCLK 2815
PMDY AP + L+ V IE+++E+FANY++NDS+GII+ HTVFAD + A SD C+K
Sbjct: 832 DPMDYTAPATVELDHDVMIEEVEEYFANYIVNDSLGIIANAHTVFADKEHLKAMSDQCVK 891
Query: 2816 LAQLFTLAVDFPKTGVPAKIPSDLVPREYPDFMEKEDKPTYISKRVIGKLYRAVKDHATQ 2995
LA+LF+ AVDFPKTGVPA IP +L +EYPDFMEK DKPTY S VIGKL+R VK+ +T
Sbjct: 892 LARLFSTAVDFPKTGVPAVIPPELHVKEYPDFMEKPDKPTYKSHNVIGKLFREVKEISTS 951
Query: 2996 SLTISSFTKEVAYKAYDRDLEVGAYKDYIDAAFVCKNLYDSSLLSIMHRYGIRYEAEIVS 3175
+ +I+SFTK VA +YD ++EV + DY+D AF K YD L ++M YGI+ EAEI+
Sbjct: 952 AGSITSFTKLVARDSYDHEMEVDGFMDYVDDAFYHKTNYDYKLGNLMDYYGIKTEAEILG 1011
Query: 3176 GNIFSLSKFHGSKLSDVRELLLTEVKSLQRETRSWFD----ADVRELEANEYDLASAWYH 3343
GNI +SK + E + V+SL++E R+WF+ DV ++ Y ASAWYH
Sbjct: 1012 GNIMKMSKSFNKRRD--AEAINMAVRSLRKEARAWFNENSSGDVDSGSSDVYAKASAWYH 1069
Query: 3344 ITYHPYYWG-YGENDDSDYRNPHLISFPWTVYDKLLRIKRNK 3466
+TYHP YWG Y E + D H +SF W VY L++IK+ K
Sbjct: 1070 VTYHPSYWGCYNEGMNRD----HYLSFSWCVYPLLVQIKKEK 1107
>ref|XP_006469265.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Citrus sinensis]
Length = 1132
Score = 939 bits (2428), Expect = 0.0
Identities = 531/1125 (47%), Positives = 707/1125 (62%), Gaps = 25/1125 (2%)
Frame = +2
Query: 170 RTVKITHIPLGTDANQLTTLLEGILQEKGCVYSAKILKQTNPRHV-YAHAIVQLDRSFLA 346
+T+++ P G A + LE G VY+ K+ +T + V +AIVQ A
Sbjct: 3 KTIQVFGFPAGVTAEAVKDFLES-KTGGGTVYALKL--RTPKKGVGRLYAIVQFTTKEAA 59
Query: 347 RKL----CTTLP---ASTLMQATVLPRDMVSKPRESTVHIATRRLHFGCQVSHNRYAVLW 505
+ C T + + A + +D V +PR + LHFGC++S+ ++AVLW
Sbjct: 60 DTIISLACRTEKLWYGRSYLNARRMEQDTVPRPRTFMHTMEHIELHFGCKISNEKFAVLW 119
Query: 506 TCDSDVQFEFASDIKKLFIELTDRGISYRLVLSFGNVRYMHRYSTDSSRRTYLVIQVYCA 685
+V F ++K+ L+ G YRL L + N+ + + YL+IQ+ A
Sbjct: 120 R-GVNVTVNFGFGMRKINFLLSHLGEEYRLELDYENIWEIELHCPRWQMTKYLLIQLLGA 178
Query: 686 PKIYYKE-PSSDMGDGLWIAEFFKFGSDNQWIRTTDFTRNFSIGNSTSICLELLDGAKDA 862
P+I+ K S D+ + FFK D+QW+RTTDFT + IG ST +C+EL +
Sbjct: 179 PRIFQKGIRSPDLLYESPVFNFFKEVPDDQWVRTTDFTPSNFIGQSTGLCMELPYRLELP 238
Query: 863 VIKNSFYNYKDIRENLSLHINXXXXXXXRLVPSXXXXXXXXXXYKILFQVNALVQEGILS 1042
K +F YK+ + L LVP Y+ILF++N LVQ G ++
Sbjct: 239 DFKENFAYYKESEDRFVLETGSAYSRSLDLVPIVGPPDGIALPYEILFKINLLVQNGCVA 298
Query: 1043 WPALGREFFRLLEPKSE-------EYVGRILFALQEISYSGPTYTPEKSLKKIIYDKKAR 1201
P L F+RL++P E+ L+ L+E Y + ++ K + K
Sbjct: 299 GPLLDSNFYRLVDPYRAPVSISCIEHALDKLYHLKECCYEPSRWLTDQYRKYMTSRSKPS 358
Query: 1202 RYADFNTYLDDGLMRVHRVQVTPTKVYLFGPEVDVSNRVIRQFSEYIDDFIRVSFIDEDE 1381
A LDDGL+ VHRVQVTP++VY GPE++VSNRV+R F ID+F+R+SFIDED
Sbjct: 359 SPA---ISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDL 415
Query: 1382 RQLFATDLCQKMPNG-EKKYTKLYLRILSXXXXXXXXXXXXFEFLAFSSSQLRESSLWMF 1558
++ +TDL + + + T++Y RILS FEFLAFSSSQLRESS WMF
Sbjct: 416 DKIHSTDLSPRGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMF 475
Query: 1559 ASNEQVTAETIRAWMGNFLSIRNVAKCAARMGQCFSSSKKTLCVYESEVEDCNDITIERD 1738
AS +TA IR WMGNF IRNVAK AAR+GQ FSSSK+TL V+ E+E D+ IE
Sbjct: 476 ASRYGLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIG 535
Query: 1739 SDSYVFSDGIGKISVALAEELAVHCGC-DYVPSAFQIRYGGYKGVVAMDPTSSYKLSLRP 1915
YVFSDGIGK+S A ++A CG D PSAFQIRYGGYKGVVA DPTSS KLSLR
Sbjct: 536 KTKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADPTSSKKLSLRD 595
Query: 1916 SMRKFDSENRNVDVLSWTKFRPCFLNRQIITLLSTLGVRDQRFENLQQEDINRLDLILDH 2095
SMRK++SE +DVL+W+K++PCFLNRQ+I+LLSTLG+ D+ FE Q+E + +LD IL
Sbjct: 596 SMRKYESELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTD 655
Query: 2096 KDMALEVLQIMSGGENHNVIINMLRCGYSPKDEPYLSMVLHAFRAAKLLELKHKARIFVP 2275
A E L++MS GEN N++ +L CGY P EP+LSM+L FRA+KLLEL+ K RIF+P
Sbjct: 656 PLKAQEALELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIP 715
Query: 2276 KGRCLMGCLDEYRILEYGEIFVQVTEPRSSLHFGTTGNQTSIRKR---IITGTVIVAKNP 2446
GR +MGCLDE R L YG++FVQ++ G + +S R R I+ G V+VAKNP
Sbjct: 716 NGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNP 775
Query: 2447 CLHPGDVRILRAVDDPRLHHLVDCVVFPQKGKRPHPNECSGSDLDGDLYFVCWDESLIPP 2626
CLHPGDVR+L+AV+ P LHH+VDCVVFPQKG RPHPNECSGSDLDGD+YFVCWD+ LIPP
Sbjct: 776 CLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELIPP 835
Query: 2627 DVDMPMDYAAPPQISLNRPVTIEDIQEFFANYMLNDSIGIISARHTVFADSDQEMARSDN 2806
D PMDY + L+ V IED++E+F NY++NDS+GII+ HTVFAD + ARS+
Sbjct: 836 QQDPPMDYTPAQSMQLDHDVQIEDVEEYFTNYIVNDSLGIIANAHTVFADREPHKARSEP 895
Query: 2807 CLKLAQLFTLAVDFPKTGVPAKIPSDLVPREYPDFMEKEDKPTYISKRVIGKLYRAVKDH 2986
CL+LA+ F++AVDFPKTGVPA+IP L +EYPDFMEK DKPTY S+ VIGKL+RAVKD
Sbjct: 896 CLQLAEKFSIAVDFPKTGVPAEIPPHLYVKEYPDFMEKPDKPTYESQNVIGKLFRAVKDI 955
Query: 2987 ATQSLTISSFTKEVAYKAYDRDLEVGAYKDYIDAAFVCKNLYDSSLLSIMHRYGIRYEAE 3166
A + I FTKEVA ++YD D+EV ++D+ID A K YD L ++M YGI+ EAE
Sbjct: 956 APHTSCIRLFTKEVARRSYDPDMEVDGFEDHIDDAIYHKGNYDYKLGNLMDYYGIKTEAE 1015
Query: 3167 IVSGNIFSLSKFHGSKLSDVRELLLTEVKSLQRETRSWF-DADVRELEANEYDLASAWYH 3343
I++G+I +SK +K D E + V++L++E R+WF + + E + Y ASAWYH
Sbjct: 1016 ILTGSIMKMSKSF-TKRRDA-EAIGMAVRALRKEARAWFKEKSGSDTEDDAYAKASAWYH 1073
Query: 3344 ITYHPYYWG---YGENDDSDYRNPHLISFPWTVYDKLLRIKRNKT 3469
+TYHP YWG +G N D H +SFPW VYD+L+ IK++KT
Sbjct: 1074 VTYHPDYWGCYNHGMNRD------HFLSFPWCVYDRLVEIKKDKT 1112
>ref|XP_002284914.1| PREDICTED: RNA-dependent RNA polymerase 1 [Vitis vinifera]
Length = 1121
Score = 939 bits (2428), Expect = 0.0
Identities = 528/1125 (46%), Positives = 704/1125 (62%), Gaps = 22/1125 (1%)
Frame = +2
Query: 167 SRTVKITHIPLGTDANQLTTLLEGILQEKGCVYSAKILKQTNPRHVYAHAIVQLDRSFLA 346
S+T+++ P A+++ LE E G + + +I KQ HA VQ LA
Sbjct: 2 SKTIQVYGFPSIVSADEIKEFLEKYTGE-GTIEALEI-KQPRSGASMTHAKVQFTSFELA 59
Query: 347 RKLCTTLPAST-----LMQATVLPRDMVSKPRESTVHIATRRLHFGCQVSHNRYAVLWTC 511
+ T ++A + D++ KPR + LHFGCQ+S R+ VLW
Sbjct: 60 EFIITLCKKKVWYGRNYLKAREMDLDIIPKPRAFLHSMDRITLHFGCQMSDERFCVLWKA 119
Query: 512 DSDVQFEFASDIKKLFIELTDRGISYRLVLSFGNVRYMHRYSTDSSRRTYLVIQVYCAPK 691
+V +F S ++K + L+ Y+L LS+ N+ + +L+IQ+ AP+
Sbjct: 120 -INVSVKFGSGLRKFYFFLSHGSEEYKLELSYENIWQIQLQHPRGQITKFLLIQLLGAPQ 178
Query: 692 IYYKEPSSDMGDGLWIAEFFKFGSDNQWIRTTDFTRNFSIGNSTSICLELLDGAKDAVIK 871
IY K+ ++ +FK D+QW+R DFT + IG S ++CLEL G++ +
Sbjct: 179 IYEKDVPV-------LSYYFKEAPDDQWVREIDFTPSCFIGQSFALCLELPYGSQLPNFR 231
Query: 872 NSFYNYKDIRENLSLHINXXXXXXXRLVPSXXXXXXXXXXYKILFQVNALVQEGILSWPA 1051
+F YK+ L LVP ++ILF++N LVQ G LS P
Sbjct: 232 ENFAYYKENDGKFILESGSSYSHNLHLVPILGPPQGSSLPFQILFKINTLVQNGCLSGPT 291
Query: 1052 LGREFFRLLEPKSE-----EYVGRILFALQEISYSGPTYTPEKS---LKKIIYDKKARRY 1207
L FFRL++P+ E+ L+ L+E Y + E+ +KK + A
Sbjct: 292 LDTSFFRLVDPERFPISFIEHALEKLYHLKECCYEPVRWLSEQYRTYVKKPVAGSPA--- 348
Query: 1208 ADFNTYLDDGLMRVHRVQVTPTKVYLFGPEVDVSNRVIRQFSEYIDDFIRVSFIDEDERQ 1387
LD GL+ V RVQ+TP KVY GPEV+VSNRV+R + E ID+F+RVSF+DE+ +
Sbjct: 349 ----ISLDTGLVYVRRVQITPCKVYFCGPEVNVSNRVLRNYPEDIDNFLRVSFLDENLEK 404
Query: 1388 LFATDLCQKMPNGEKKYTKLYLRILSXXXXXXXXXXXXFEFLAFSSSQLRESSLWMFASN 1567
+ +T + +M E + T +Y RILS F+FLAFSSSQLR++S WMFAS
Sbjct: 405 IHSTVISPRMSK-EGRRTGVYRRILSILQNGIVIGDKKFDFLAFSSSQLRDNSAWMFASR 463
Query: 1568 EQVTAETIRAWMGNFLSIRNVAKCAARMGQCFSSSKKTLCVYESEVEDCNDITIERDSDS 1747
+TA IR+WMG+F IRNVAK AAR+GQ FSSSK+TL V + E+E+ DI I + +
Sbjct: 464 PGLTAAEIRSWMGDFSQIRNVAKYAARLGQSFSSSKETLKVAKDEIENIPDIEIHKGRTT 523
Query: 1748 YVFSDGIGKISVALAEELAVHCGC-DYVPSAFQIRYGGYKGVVAMDPTSSYKLSLRPSMR 1924
YVFSDGIGKIS LA +A+ CGC PSAFQIRYGGYKGVVA+DPTSS KLSLR SM
Sbjct: 524 YVFSDGIGKISPQLAHRVAIKCGCKSSTPSAFQIRYGGYKGVVAVDPTSSRKLSLRKSMF 583
Query: 1925 KFDSENRNVDVLSWTKFRPCFLNRQIITLLSTLGVRDQRFENLQQEDINRLDLILDHKDM 2104
K++S+N N+DVL+W+K++P FLNRQ+ITLLSTLGV+D FE Q+ +++LD IL
Sbjct: 584 KYESDNTNLDVLAWSKYQPSFLNRQLITLLSTLGVKDHVFEKKQRAAVDQLDTILKDPVA 643
Query: 2105 ALEVLQIMSGGENHNVIINMLRCGYSPKDEPYLSMVLHAFRAAKLLELKHKARIFVPKGR 2284
A E L++MS GEN NV+ ML CGY P EP+LSM+L FRAAKLLEL+ K RIFVP GR
Sbjct: 644 AQEALELMSPGENTNVLKEMLMCGYKPDAEPFLSMMLQTFRAAKLLELRTKTRIFVPNGR 703
Query: 2285 CLMGCLDEYRILEYGEIFVQVTEPRSSLHFGTT----GNQTSIRKRIITGTVIVAKNPCL 2452
+MGCLDE R LEYGE+FVQ++ FG + G+ + I+ G ++VAKNPCL
Sbjct: 704 SMMGCLDETRTLEYGEVFVQISGTGGRQSFGDSLMFRGSGSHHDNFILEGKIVVAKNPCL 763
Query: 2453 HPGDVRILRAVDDPRLHHLVDCVVFPQKGKRPHPNECSGSDLDGDLYFVCWDESLIPPDV 2632
HPGDVR+L AV+ P LHH+VDCVVFPQKGKRPHPNECSGSDLDGD+YFVCWD LIPP
Sbjct: 764 HPGDVRVLWAVNVPTLHHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVCWDRDLIPPQQ 823
Query: 2633 DMPMDYAAPPQISLNRPVTIEDIQEFFANYMLNDSIGIISARHTVFADSDQEMARSDNCL 2812
PMDY P L+ V IE+++E+F NY++NDS+GII+ HTVFAD + + A D C
Sbjct: 824 INPMDYTPAPTKVLDHDVMIEEVEEYFTNYIVNDSLGIIANAHTVFADKEYDKAYCDPCT 883
Query: 2813 KLAQLFTLAVDFPKTGVPAKIPSDLVPREYPDFMEKEDKPTYISKRVIGKLYRAVKDHAT 2992
+LA+LF++AVDFPKTGVPA+IP +L +EYPDFMEK DKPTY S+ VIGKL+R VKD A
Sbjct: 884 ELAKLFSIAVDFPKTGVPAEIPRNLRVKEYPDFMEKADKPTYESQSVIGKLFREVKDIAP 943
Query: 2993 QSLTISSFTKEVAYKAYDRDLEVGAYKDYIDAAFVCKNLYDSSLLSIMHRYGIRYEAEIV 3172
+ I SFT++VA ++YD D+EV ++DY+ AF K+ YD L ++M YGI+ E+EI+
Sbjct: 944 HNCNIRSFTRDVARQSYDPDMEVVGFEDYVSDAFYYKSEYDYKLGNLMDYYGIKTESEIL 1003
Query: 3173 SGNIFSLSKFHGSKLSDVRELLLTEVKSLQRETRSWFDADVRELEANEYDL---ASAWYH 3343
SG+I +SK + E + VKSL++E R+WF+ E ++ D+ ASAWYH
Sbjct: 1004 SGSIMRMSKSFDRRKD--AEAIGLAVKSLRKEARTWFNKMGSETDSEADDVYAKASAWYH 1061
Query: 3344 ITYHPYYWG-YGENDDSDYRNPHLISFPWTVYDKLLRIKRNKTRG 3475
+TYHP YWG Y E D D H +SFPW VYDKL+ KR K G
Sbjct: 1062 VTYHPDYWGCYNEGMDRD----HFLSFPWCVYDKLIHTKRKKMSG 1102
>ref|XP_006366108.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Solanum tuberosum]
Length = 1115
Score = 936 bits (2420), Expect = 0.0
Identities = 511/1045 (48%), Positives = 684/1045 (65%), Gaps = 14/1045 (1%)
Frame = +2
Query: 374 STLMQATVLPRDMVSKPRESTVHIATRRLHFGCQVSHNRYAVLWTCDSDVQFEFASDIKK 553
S+ ++A + D+V R H+ L+FGCQ+S +++AVL + ++V +F +KK
Sbjct: 73 SSYLKAWEMKTDIVQL-RAYVDHMDGITLNFGCQISDDKFAVLGS--TEVSIKFGIGLKK 129
Query: 554 LFIELTDRGISYRLVLSFGNVRYMHRYSTDSSRRTYLVIQVYCAPKIYYKEPSSDMGDGL 733
F L+ Y+L LS+ N+ + + +L+IQ++ AP+IY + +S
Sbjct: 130 FFFFLSSGSADYKLQLSYENIWQVVLHRPYGQNAQFLLIQLFGAPRIYKRLENS------ 183
Query: 734 WIAEFFKFGSDNQWIRTTDFTRNFSIGNSTSICLELLDGAKDAVIKNSFYNYKDIRENLS 913
FFK D+QW+RTTDF ++ IG S+S+CL+ G + SF++Y + N++
Sbjct: 184 -CYSFFKETPDDQWVRTTDFAPSW-IGLSSSLCLQFRRGVHLPNFQESFFHYAERENNIT 241
Query: 914 LHINXXXXXXXR--LVPSXXXXXXXXXXYKILFQVNALVQEGILSWPALGREFFRLLEPK 1087
L + LVP+ YKILF++++LVQ G + PAL FFRL++P+
Sbjct: 242 LQTGFTFFVSQKSALVPNVQPPEGIAIPYKILFKISSLVQHGCIPGPALNVNFFRLVDPQ 301
Query: 1088 SEEYVGRILFALQEISYSGPT-YTPEKSLKKII--YDKKARRYADFNTYLDDGLMRVHRV 1258
V I AL+++ Y Y P + L + Y K + + LDDGL+ V RV
Sbjct: 302 RRN-VACIEQALEKLYYLKECCYDPVRWLTEQYDGYLKGRQPPKSPSINLDDGLVYVRRV 360
Query: 1259 QVTPTKVYLFGPEVDVSNRVIRQFSEYIDDFIRVSFIDEDERQLFATDLCQKMPNGEKKY 1438
VTP KVY GPEV+VSNRV+R +SE ID+F+RVSF+DE+ +L++TDL K G
Sbjct: 361 LVTPCKVYFCGPEVNVSNRVLRNYSEDIDNFLRVSFVDEEWEKLYSTDLLPKASTGNGIR 420
Query: 1439 TKLYLRILSXXXXXXXXXXXXFEFLAFSSSQLRESSLWMFASNEQVTAETIRAWMGNFLS 1618
T +Y+RILS FEFLAFSSSQLR++S+WMFAS +TA IR WMG+F
Sbjct: 421 TNIYVRILSTLQKGFVIGDKKFEFLAFSSSQLRDNSVWMFASRPGLTAIDIRTWMGDFSQ 480
Query: 1619 IRNVAKCAARMGQCFSSSKKTLCVYESEVEDCNDITIERDSDSYVFSDGIGKISVALAEE 1798
I+NVAK AAR+GQ F SSK+TL V E+E D+ + SYVFSDGIGKIS A
Sbjct: 481 IKNVAKYAARLGQSFGSSKETLSVLRHEIEIIPDVKVH--GTSYVFSDGIGKISADFARR 538
Query: 1799 LAVHCGCDYVPSAFQIRYGGYKGVVAMDPTSSYKLSLRPSMRKFDSENRNVDVLSWTKFR 1978
+A CG Y PSAFQIRYGGYKGVVA+DP SS KLSLR SM K++S+N +DVL W+K++
Sbjct: 539 VASKCGLQYTPSAFQIRYGGYKGVVAVDPYSSMKLSLRKSMSKYESDNNKLDVLEWSKYQ 598
Query: 1979 PCFLNRQIITLLSTLGVRDQRFENLQQEDINRLDLILDHKDMALEVLQIMSGGENHNVII 2158
PCFLNRQ++TLLSTLGV+D E Q+E +++LD IL A E L++MS GEN N++
Sbjct: 599 PCFLNRQLVTLLSTLGVKDDVLEQKQKEAVDQLDAILHDSLKAQEALELMSPGENTNILK 658
Query: 2159 NMLRCGYSPKDEPYLSMVLHAFRAAKLLELKHKARIFVPKGRCLMGCLDEYRILEYGEIF 2338
ML CGY P EP+LSM+L FRA+KLL+L+ ++RIF+P GR +MGCLDE R LEYG++F
Sbjct: 659 AMLNCGYMPDAEPFLSMMLQTFRASKLLDLRTRSRIFIPNGRAMMGCLDESRTLEYGQVF 718
Query: 2339 VQVT-----EPRSSLHFGTTGNQTSIRKRIITGTVIVAKNPCLHPGDVRILRAVDDPRLH 2503
VQ T E LH T+ I+ G V+VAKNPCLHPGD+R+LRAVD P LH
Sbjct: 719 VQFTGSGHREFSEDLHPFNNSRSTNCNF-ILKGNVVVAKNPCLHPGDIRVLRAVDVPALH 777
Query: 2504 HLVDCVVFPQKGKRPHPNECSGSDLDGDLYFVCWDESLIPPDVDMPMDYAAPPQISLNRP 2683
H+VDCVVFPQKGKRPHPNECSGSDLDGD+YFVCWD+ +IPP M+Y P I L+
Sbjct: 778 HMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVCWDQDMIPPRQVQAMEYPPAPSIQLDHD 837
Query: 2684 VTIEDIQEFFANYMLNDSIGIISARHTVFADSDQEMARSDNCLKLAQLFTLAVDFPKTGV 2863
VTIE+++E+F NY++NDS+GII+ H VFAD + +MA SD C KLA+LF++AVDFPKTGV
Sbjct: 838 VTIEEVEEYFTNYIVNDSLGIIANAHVVFADREPDMAMSDPCKKLAELFSIAVDFPKTGV 897
Query: 2864 PAKIPSDLVPREYPDFMEK-EDKPTYISKRVIGKLYRAVKDHATQSLTISSFTKEVAYKA 3040
PA+IPS L P+EYPDFM+K DK TYIS+RVIGKLYR VKD A Q+ + + FT++VA ++
Sbjct: 898 PAEIPSQLRPKEYPDFMDKPPDKTTYISERVIGKLYRKVKDKAPQASSTAIFTRDVARRS 957
Query: 3041 YDRDLEVGAYKDYIDAAFVCKNLYDSSLLSIMHRYGIRYEAEIVSGNIFSLSKFHGSKLS 3220
YD DLEV ++DYID AF K YD+ L ++M YGI+ EAEI+SG I SK +
Sbjct: 958 YDADLEVDGFEDYIDEAFDYKTEYDNKLGNLMDYYGIKTEAEILSGGIMKTSKTFDRRKD 1017
Query: 3221 DVRELLLTEVKSLQRETRSWFDA--DVRELEANEYDLASAWYHITYHPYYWG-YGENDDS 3391
E + V++L++E R+WF D+ ++ ASAWYH+TYHP YWG Y +
Sbjct: 1018 --AEAISIAVRALRKEARTWFKRRNDIDDM----LPKASAWYHVTYHPTYWGCYNQG--- 1068
Query: 3392 DYRNPHLISFPWTVYDKLLRIKRNK 3466
+ H ISFPW VYD+L++IK+ K
Sbjct: 1069 -LKRDHFISFPWCVYDQLIQIKKEK 1092
>ref|NP_001234319.1| RNA-directed RNA polymerase [Solanum lycopersicum]
gi|4038592|emb|CAA71421.1| RNA-directed RNA polymerase
[Solanum lycopersicum]
Length = 1114
Score = 936 bits (2420), Expect = 0.0
Identities = 501/1018 (49%), Positives = 677/1018 (66%), Gaps = 13/1018 (1%)
Frame = +2
Query: 458 LHFGCQVSHNRYAVLWTCDSDVQFEFASDIKKLFIELTDRGISYRLVLSFGNVRYMHRYS 637
L+FGCQ+S +++AVL + ++V +F +KK F L+ Y+L LS+ N+ + +
Sbjct: 100 LNFGCQISDDKFAVLGS--TEVSIQFGIGLKKFFFFLSSGSADYKLQLSYENIWQVVLHR 157
Query: 638 TDSSRRTYLVIQVYCAPKIYYKEPSSDMGDGLWIAEFFKFGSDNQWIRTTDFTRNFSIGN 817
+L+IQ++ AP+IY + +S FFK D+QW+RTTDF ++ IG
Sbjct: 158 PYGQNAQFLLIQLFGAPRIYKRLENS-------CYSFFKETPDDQWVRTTDFPPSW-IGL 209
Query: 818 STSICLELLDGAKDAVIKNSFYNYKDIRENLSLHINXXXXXXXR--LVPSXXXXXXXXXX 991
S+S+CL+ G + + SF++Y + N++L + LVP+
Sbjct: 210 SSSLCLQFRRGVRLPNFEESFFHYAERENNITLQTGFTFFVSQKSALVPNVQPPEGISIP 269
Query: 992 YKILFQVNALVQEGILSWPALGREFFRLLEPKSEEYVGRILFALQEISYSGPT-YTPEKS 1168
YKILF++++LVQ G + PAL FFRL++P+ V I AL+++ Y Y P +
Sbjct: 270 YKILFKISSLVQHGCIPGPALNVYFFRLVDPRRRN-VACIEHALEKLYYIKECCYDPVRW 328
Query: 1169 LKKII--YDKKARRYADFNTYLDDGLMRVHRVQVTPTKVYLFGPEVDVSNRVIRQFSEYI 1342
L + Y K + + LDDGL+ V RV VTP KVY GPEV+VSNRV+R +SE I
Sbjct: 329 LTEQYDGYLKGRQPPKSPSITLDDGLVYVRRVLVTPCKVYFCGPEVNVSNRVLRNYSEDI 388
Query: 1343 DDFIRVSFIDEDERQLFATDLCQKMPNGEKKYTKLYLRILSXXXXXXXXXXXXFEFLAFS 1522
D+F+RVSF+DE+ +L++TDL K G T +Y RILS FEFLAFS
Sbjct: 389 DNFLRVSFVDEEWEKLYSTDLLPKASTGSGVRTNIYERILSTLRKGFVIGDKKFEFLAFS 448
Query: 1523 SSQLRESSLWMFASNEQVTAETIRAWMGNFLSIRNVAKCAARMGQCFSSSKKTLCVYESE 1702
SSQLR++S+WMFAS +TA IRAWMG+F I+NVAK AAR+GQ F SS++TL V E
Sbjct: 449 SSQLRDNSVWMFASRPGLTANDIRAWMGDFSQIKNVAKYAARLGQSFGSSRETLSVLRHE 508
Query: 1703 VEDCNDITIERDSDSYVFSDGIGKISVALAEELAVHCGCDYVPSAFQIRYGGYKGVVAMD 1882
+E D+ + SYVFSDGIGKIS A +A CG Y PSAFQIRYGGYKGVV +D
Sbjct: 509 IEVIPDVKVH--GTSYVFSDGIGKISGDFAHRVASKCGLQYTPSAFQIRYGGYKGVVGVD 566
Query: 1883 PTSSYKLSLRPSMRKFDSENRNVDVLSWTKFRPCFLNRQIITLLSTLGVRDQRFENLQQE 2062
P SS KLSLR SM K++S+N +DVL W+K++PC+LNRQ+ITLLSTLGV+D+ E Q+E
Sbjct: 567 PDSSMKLSLRKSMSKYESDNIKLDVLGWSKYQPCYLNRQLITLLSTLGVKDEVLEQKQKE 626
Query: 2063 DINRLDLILDHKDMALEVLQIMSGGENHNVIINMLRCGYSPKDEPYLSMVLHAFRAAKLL 2242
+++LD IL A E L++MS GEN N++ ML CGY P EP+LSM+L FRA+KLL
Sbjct: 627 AVDQLDAILHDSLKAQEALELMSPGENTNILKAMLNCGYKPDAEPFLSMMLQTFRASKLL 686
Query: 2243 ELKHKARIFVPKGRCLMGCLDEYRILEYGEIFVQVT-----EPRSSLHFGTTGNQTSIRK 2407
+L+ ++RIF+P GR +MGCLDE R LEYG++FVQ T E LH T+
Sbjct: 687 DLRTRSRIFIPNGRTMMGCLDESRTLEYGQVFVQFTGAGHGEFSDDLHPFNNSRSTN-SN 745
Query: 2408 RIITGTVIVAKNPCLHPGDVRILRAVDDPRLHHLVDCVVFPQKGKRPHPNECSGSDLDGD 2587
I+ G V+VAKNPCLHPGD+R+L+AV+ LHH+VDCVVFPQKGKRPHPNECSGSDLDGD
Sbjct: 746 FILKGNVVVAKNPCLHPGDIRVLKAVNVRALHHMVDCVVFPQKGKRPHPNECSGSDLDGD 805
Query: 2588 LYFVCWDESLIPPDVDMPMDYAAPPQISLNRPVTIEDIQEFFANYMLNDSIGIISARHTV 2767
+YFVCWD+ +IPP PM+Y P I L+ VTIE+++E+F NY++NDS+GII+ H V
Sbjct: 806 IYFVCWDQDMIPPRQVQPMEYPPAPSIQLDHDVTIEEVEEYFTNYIVNDSLGIIANAHVV 865
Query: 2768 FADSDQEMARSDNCLKLAQLFTLAVDFPKTGVPAKIPSDLVPREYPDFMEKEDKPTYISK 2947
FAD + +MA SD C KLA+LF++AVDFPKTGVPA+IPS L P+EYPDFM+K DK +YIS+
Sbjct: 866 FADREPDMAMSDPCKKLAELFSIAVDFPKTGVPAEIPSQLRPKEYPDFMDKPDKTSYISE 925
Query: 2948 RVIGKLYRAVKDHATQSLTISSFTKEVAYKAYDRDLEVGAYKDYIDAAFVCKNLYDSSLL 3127
RVIGKL+R VKD A Q+ +I++FT++VA ++YD D+EV ++DYID AF K YD+ L
Sbjct: 926 RVIGKLFRKVKDKAPQASSIATFTRDVARRSYDADMEVDGFEDYIDEAFDYKTEYDNKLG 985
Query: 3128 SIMHRYGIRYEAEIVSGNIFSLSKFHGSKLSDVRELLLTEVKSLQRETRSWFDA--DVRE 3301
++M YGI+ EAEI+SG I SK + E + V++L++E R+WF D+ +
Sbjct: 986 NLMDYYGIKTEAEILSGGIMKASKTFDRRKD--AEAISVAVRALRKEARAWFKRRNDIDD 1043
Query: 3302 LEANEYDLASAWYHITYHPYYWG-YGENDDSDYRNPHLISFPWTVYDKLLRIKRNKTR 3472
+ ASAWYH+TYHP YWG Y + + H ISFPW VYD+L++IK++K R
Sbjct: 1044 M----LPKASAWYHVTYHPTYWGCYNQG----LKRAHFISFPWCVYDQLIQIKKDKAR 1093
>ref|NP_001267692.1| RNA-dependent RNA polymerase 1-like [Cucumis sativus]
gi|316989899|gb|ADU77015.1| RNA-dependent RNA polymerase
1a [Cucumis sativus]
Length = 1130
Score = 936 bits (2419), Expect = 0.0
Identities = 534/1134 (47%), Positives = 711/1134 (62%), Gaps = 26/1134 (2%)
Frame = +2
Query: 170 RTVKITHIPLGTDANQLTTLLEGILQEKGCVYSAKIL--KQTNPRHVYAHAIVQLDRSFL 343
+T+ I+ P A+ + LEG G VY+ K+ K+ R +AIVQ +
Sbjct: 3 KTIHISGFPSHVTADAVKNFLEGHTGP-GTVYAIKVRPPKRGGGR---LYAIVQFTSATQ 58
Query: 344 ARKLCTTLP-----ASTLMQATVLPRDMVSKPRESTVHIATRRLHFGCQVSHNRYAVLWT 508
A + + S+ ++A D+V KPR + L FGCQVS ++ VLW
Sbjct: 59 AELIISLANQRLWYGSSYLKARATEVDIVPKPRTYMYTLEELLLCFGCQVSTEKFRVLWE 118
Query: 509 CDSDVQFEFASDIKKLFIELTDRGISYRLVLSFGNVRYMHRYSTDSSRRTYLVIQVYCAP 688
+ D+ F ++K+ L + + YRL LS+ + + + YL+IQ+ AP
Sbjct: 119 GNVDL-VTFGIGMRKMNFHLKYKSVEYRLELSYEIIWQIQLHCPRDQSMKYLLIQLSGAP 177
Query: 689 KIYYK-EPSSDMGDGLWIAEFFKFGSDNQWIRTTDFTRNFSIGNSTSICLELLDGAKDAV 865
+IY K P+S + FFK SD+QW+RTTDFT + SIG S+S+CL+L +G +
Sbjct: 178 RIYKKVAPNSGQIFDNPLLNFFKEASDDQWVRTTDFTSSCSIGQSSSLCLKLPNGRQLPP 237
Query: 866 IKNSFYNYKDIRENLSLHINXXXXXXXRLVPSXXXXXXXXXXYKILFQVNALVQEGILSW 1045
K +F Y++ L R + YKILF++NALVQ G + W
Sbjct: 238 FKQNFAYYEEFEHEFRLIDEDANFSFCRDLAPIVDSRSHVLPYKILFKINALVQYGCIPW 297
Query: 1046 PALGREFFRLLEP------KSEEYVGRILFALQEISYSGPTYTPEKSLKKIIYDKKARRY 1207
P L F+RL+E + E+ LF L+E +Y + E+ Y K +R
Sbjct: 298 PLLDASFYRLVERIITTRIEFVEHALEKLFHLKECNYDPSNFLTEQ------YRKYSRHP 351
Query: 1208 ADFNTY-LDDGLMRVHRVQVTPTKVYLFGPEVDVSNRVIRQFSEYIDDFIRVSFIDEDER 1384
+ LDDGL+ V RVQ+TP KV+ GPEV+VSNRV+R FS+YID+F+RVSF+DE+
Sbjct: 352 PNSPVISLDDGLVYVRRVQITPCKVFFCGPEVNVSNRVLRHFSQYIDNFLRVSFVDEEWD 411
Query: 1385 QLFATDLCQKMPN-GEKKYTKLYLRILSXXXXXXXXXXXXFEFLAFSSSQLRESSLWMFA 1561
++ +TDL +M + E T +Y RILS F+FLAFSSSQLR++SLWMFA
Sbjct: 412 KMRSTDLLPRMSSKSEDGKTDIYRRILSVLKNGIVIGDKTFQFLAFSSSQLRDNSLWMFA 471
Query: 1562 SNEQVTAETIRAWMGNFLSIRNVAKCAARMGQCFSSSKKTLCVYESEVEDCNDITIERDS 1741
S + A IRAWMG+F I+N AK AAR+GQ F SS + L V +E E DI +++
Sbjct: 472 SGPDIDAAYIRAWMGDFRHIKNPAKYAARLGQSFGSSTEALSVASNEREIIPDIEVQQGE 531
Query: 1742 DSYVFSDGIGKISVALAEELAVHCGCDYVPSAFQIRYGGYKGVVAMDPTSSYKLSLRPSM 1921
YVFSDGIGKIS A+E+A CG VPSAFQIRYGGYKGVVA+DP S+ KLSLR SM
Sbjct: 532 IKYVFSDGIGKISSKFAKEVAAKCGFQAVPSAFQIRYGGYKGVVAVDPYSTIKLSLRKSM 591
Query: 1922 RKFDSENRNVDVLSWTKFRPCFLNRQIITLLSTLGVRDQRFENLQQEDINRLDLILDHKD 2101
KF+S+N +DVL +K++PCFLNRQ+ITL+STLGVRD+ FE Q E + +LD IL
Sbjct: 592 CKFESDNTKLDVLGHSKYQPCFLNRQLITLMSTLGVRDEIFEKKQSEAVEQLDAILTDPL 651
Query: 2102 MALEVLQIMSGGENHNVIINMLRCGYSPKDEPYLSMVLHAFRAAKLLELKHKARIFVPKG 2281
A E L++MS GEN N++ ML+CGY P EPYLSM+L FRA+KLLEL+ K+RIF+P G
Sbjct: 652 KAQEALELMSPGENTNILKEMLKCGYQPDVEPYLSMMLQTFRASKLLELRTKSRIFIPNG 711
Query: 2282 RCLMGCLDEYRILEYGEIFVQVTEPR-----SSLHFGTTGNQTSIRKRIITGTVIVAKNP 2446
R +MGCLDE R LEYG++FVQ++ R S F G + + +I G V VAKNP
Sbjct: 712 RAMMGCLDETRTLEYGQVFVQISSGRHRNLSESFAFNRIGREHHL---VIEGNVTVAKNP 768
Query: 2447 CLHPGDVRILRAVDDPRLHHLVDCVVFPQKGKRPHPNECSGSDLDGDLYFVCWDESLIPP 2626
CLHPGDVR+L+AV+ P L+H+VDCVVFPQKG RPHPNECSGSDLDGD+YFVCWD LIP
Sbjct: 769 CLHPGDVRVLKAVNIPGLYHMVDCVVFPQKGSRPHPNECSGSDLDGDIYFVCWDTELIPS 828
Query: 2627 DVDMPMDYAAPPQISLNRPVTIEDIQEFFANYMLNDSIGIISARHTVFADSDQEMARSDN 2806
PMDY P L+R VT EDIQE+F NYM+NDS+GII+ HT FAD + ARS
Sbjct: 829 RQIPPMDYTPAPPNELDRDVTTEDIQEYFVNYMVNDSLGIIANAHTAFADKELFKARSSP 888
Query: 2807 CLKLAQLFTLAVDFPKTGVPAKIPSDLVPREYPDFMEKEDKPTYISKRVIGKLYRAVKDH 2986
CL+LA+LF++AVDFPKTGVPA IPS L +E+PDFMEK D+P+Y S +VIGKL+RAVKD
Sbjct: 889 CLELAKLFSVAVDFPKTGVPAIIPSHLYVKEFPDFMEKPDRPSYESNKVIGKLFRAVKDI 948
Query: 2987 ATQSLTISSFTKEVAYKAYDRDLEVGAYKDYIDAAFVCKNLYDSSLLSIMHRYGIRYEAE 3166
A I SFT++VA + YD D+EV ++DY++ AF K+ YD L +++ YGI+ EAE
Sbjct: 949 APTLSHIRSFTRDVARRCYDCDMEVEGFEDYVEDAFYHKSNYDYKLGNLLDYYGIKSEAE 1008
Query: 3167 IVSGNIFSLSKFHGSKLSDVRELLLTEVKSLQRETRSWFDADVRE-LEANEYDL---ASA 3334
++SG+I +SK + E + V+SL++E R+WF+A RE ++N DL ASA
Sbjct: 1009 VLSGSIMRMSKSFTRRRD--AEAINLAVRSLRKEARTWFNA--REGADSNSDDLFAKASA 1064
Query: 3335 WYHITYHPYYWG-YGENDDSDYRNPHLISFPWTVYDKLLRIKRNKTRGSDQLGK 3493
WY++TYH YWG Y E D H +SFPW VYDKL++IK N R ++ +
Sbjct: 1065 WYYVTYHHSYWGCYNEGMKRD----HYLSFPWCVYDKLMQIKENNLRRRERAAR 1114
>gb|EOY01384.1| RNA-dependent RNA polymerase 1 isoform 1 [Theobroma cacao]
gi|508709488|gb|EOY01385.1| RNA-dependent RNA polymerase
1 isoform 1 [Theobroma cacao] gi|508709489|gb|EOY01386.1|
RNA-dependent RNA polymerase 1 isoform 1 [Theobroma
cacao]
Length = 1109
Score = 935 bits (2417), Expect = 0.0
Identities = 530/1116 (47%), Positives = 704/1116 (63%), Gaps = 16/1116 (1%)
Frame = +2
Query: 170 RTVKITHIPLGTDANQLTTLLEGILQEKGCVYSAKILKQTNPRHVYAHAIVQLDRSFLAR 349
+T++++ P A ++ T LE + K VY+ KI +Q N YA IVQ +S A
Sbjct: 3 KTIQVSRFPSNVHAEEVKTFLE-LYTGKETVYALKIRQQKNGGRAYA--IVQFTKSTDAE 59
Query: 350 KLCTTLP-----ASTLMQATVLPRDMVSKPRESTVHIATRRLHFGCQVSHNRYAVLWTCD 514
+ S+ ++A + D+V KPR + LHFGCQVS+ ++ VLW +
Sbjct: 60 LIIRLTNQRLYYGSSYLKAREMENDIVPKPRTFLHTMEGVTLHFGCQVSNEKFYVLWE-E 118
Query: 515 SDVQFEFASDIKKLFIELTDRGISYRLVLSFGNVRYMHRYSTDSSRRTYLVIQVYCAPKI 694
DV F ++KL L+ + YRL L + N+ + + + YL+IQ++ AP+I
Sbjct: 119 VDVTVNFGMGMRKLQFLLSHHCVEYRLDLFYENIWQIELHRPRNQTSKYLLIQLFGAPRI 178
Query: 695 YYKEP-SSDMGDGLWIAEFFKFGSDNQWIRTTDFTRNFSIGNSTSICLELLDGAKDAVIK 871
Y K+ SS + + +F D+QW+RTTDFT++ IG S+ +CLEL + +
Sbjct: 179 YEKDVRSSGLVFENPLLNYFMDVPDDQWVRTTDFTQSSCIGQSSVLCLELPYYLQLPNFR 238
Query: 872 NSFYNYKDIRENLSLHINXXXXXXXRLVPSXXXXXXXXXXYKILFQVNALVQEGILSWPA 1051
+F YK+ L LVP Y+ILF++N LVQ G + PA
Sbjct: 239 ENFAYYKESEGKFVLESGSSYSRNLNLVPIVGPSLGIDLPYEILFKINLLVQNGCIPGPA 298
Query: 1052 LGREFFRLLEPKSEEYVGRILFALQEISYSGPT-YTPEKSL----KKIIYDKKARRYADF 1216
L F+RL+ P + V I AL+++ Y + P K L K I KK
Sbjct: 299 LDANFYRLVNPCRIDKV-YIDHALEKLYYLKECCFEPSKWLLEQYKGYIASKKNPGSPVI 357
Query: 1217 NTYLDDGLMRVHRVQVTPTKVYLFGPEVDVSNRVIRQFSEYIDDFIRVSFIDEDERQLFA 1396
+ LDDGL+ V RVQ+TP++VY GPE++VSNRV+R F + ID+F+R++F+DE+ ++ +
Sbjct: 358 S--LDDGLVNVRRVQITPSRVYFCGPEINVSNRVLRHFHDDIDNFLRITFVDEELEKIHS 415
Query: 1397 TDLCQKMPNGEKKYTKLYLRILSXXXXXXXXXXXXFEFLAFSSSQLRESSLWMFASNEQV 1576
TDL + + T++Y RILS FEFLAFSSSQLRE+S WMFAS E +
Sbjct: 416 TDLLTR-----NRITEIYGRILSTLKNGIVIGDKQFEFLAFSSSQLRENSAWMFASREGL 470
Query: 1577 TAETIRAWMGNFLSIRNVAKCAARMGQCFSSSKKTLCVYESEVEDCNDITIERDSDSYVF 1756
TA IR WMG F IRNVAK AAR+GQ FSSS +TL V + E+E +D+ I+RD +YVF
Sbjct: 471 TAADIRTWMGEFSKIRNVAKYAARLGQSFSSSTETLSVAKDEIEIIDDVEIKRDGINYVF 530
Query: 1757 SDGIGKISVALAEELAVHCGCD-YVPSAFQIRYGGYKGVVAMDPTSSYKLSLRPSMRKFD 1933
SDGIGKIS A+++A C + PSAFQIR GG+KGVVA+DPTSS KLSLR SM K++
Sbjct: 531 SDGIGKISAKFAKKVAAKCRLNGRTPSAFQIRIGGFKGVVAVDPTSSKKLSLRGSMSKYE 590
Query: 1934 SENRNVDVLSWTKFRPCFLNRQIITLLSTLGVRDQRFENLQQEDINRLDLILDHKDMALE 2113
SEN +DVL+W+K++PCFLNRQ+ITLLSTLGV D FE Q+E +++L+ IL A E
Sbjct: 591 SENTKLDVLAWSKYQPCFLNRQLITLLSTLGVPDHAFEEKQREVVDQLNAILTDPLKAQE 650
Query: 2114 VLQIMSGGENHNVIINMLRCGYSPKDEPYLSMVLHAFRAAKLLELKHKARIFVPKGRCLM 2293
L++MS GEN N++ ML CGY P EP+LSM+L FRA+KLLEL+ K+RIFV GR +M
Sbjct: 651 ALELMSPGENTNILKEMLLCGYEPDAEPFLSMMLQTFRASKLLELRTKSRIFVANGRSMM 710
Query: 2294 GCLDEYRILEYGEIFVQVTEPRSSLHFGTTGNQTSIRKRIITGTVIVAKNPCLHPGDVRI 2473
GCLDE R L+YG++FVQV+ RS F I+ G V+VAKNPCLHPGDVR+
Sbjct: 711 GCLDETRTLDYGQVFVQVSGSRSEQRF------------IVQGKVVVAKNPCLHPGDVRV 758
Query: 2474 LRAVDDPRLHHLVDCVVFPQKGKRPHPNECSGSDLDGDLYFVCWDESLIPPDVDMPMDYA 2653
L AV+ P LHH+VDCVVFPQKG RPHPNECSGSDLDGD+YFVCWD LIP PMDY+
Sbjct: 759 LTAVNVPDLHHMVDCVVFPQKGSRPHPNECSGSDLDGDIYFVCWDPELIPSKQIPPMDYS 818
Query: 2654 APPQISLNRPVTIEDIQEFFANYMLNDSIGIISARHTVFADSDQEMARSDNCLKLAQLFT 2833
P L VTIE+++E+F NY++NDS+GII+ HTVFAD + A S C LA+LF+
Sbjct: 819 PAPTKPLEHEVTIEEVEEYFTNYIVNDSLGIIANAHTVFADREPRKAMSSECKWLAKLFS 878
Query: 2834 LAVDFPKTGVPAKIPSDLVPREYPDFMEKEDKPTYISKRVIGKLYRAVKDHATQSLTISS 3013
+AVDFPKTGVPA+IP +L +EYPDFMEK DKPTY S VIGKL+R VKD A I S
Sbjct: 879 IAVDFPKTGVPAEIPQELRVKEYPDFMEKPDKPTYQSYNVIGKLFREVKDLAPNECFIRS 938
Query: 3014 FTKEVAYKAYDRDLEVGAYKDYIDAAFVCKNLYDSSLLSIMHRYGIRYEAEIVSGNIFSL 3193
T+E + YD D+EV Y+DY+D AF K+ YD L ++M YGI+ EAEI+SG I +
Sbjct: 939 LTRERLERFYDPDMEVDGYEDYVDDAFYHKSNYDYKLGNLMEYYGIKTEAEILSGGIMKM 998
Query: 3194 SKFHGSKLSDVRELLLTEVKSLQRETRSWFDADVRELEANEYDL---ASAWYHITYHPYY 3364
S+ +K D E + V+SL++E RSWF+ L++ DL ASAWYH+TYHP Y
Sbjct: 999 SRSF-TKQRDA-EAIGVAVRSLRKEARSWFNEKGNGLDSEADDLYAKASAWYHVTYHPSY 1056
Query: 3365 WG-YGENDDSDYRNPHLISFPWTVYDKLLRIKRNKT 3469
WG Y E + + H +SFPW VYDKL+ IK+ T
Sbjct: 1057 WGLYNEGMNRN----HFLSFPWCVYDKLILIKKKVT 1088
>gb|ABO92977.1| putative RNA-dependent RNA-polymerase [Solanum tuberosum]
Length = 1115
Score = 935 bits (2417), Expect = 0.0
Identities = 509/1047 (48%), Positives = 686/1047 (65%), Gaps = 14/1047 (1%)
Frame = +2
Query: 374 STLMQATVLPRDMVSKPRESTVHIATRRLHFGCQVSHNRYAVLWTCDSDVQFEFASDIKK 553
S+ ++A + D+V R H+ L+FGCQ+S +++AVL + ++V +F +KK
Sbjct: 73 SSYLKAWEMKTDIVQL-RAYVDHMDGITLNFGCQISEDKFAVLGS--TEVSIKFGIGLKK 129
Query: 554 LFIELTDRGISYRLVLSFGNVRYMHRYSTDSSRRTYLVIQVYCAPKIYYKEPSSDMGDGL 733
F L+ Y+L LS+ N+ + + +L+IQ++ AP+IY + +S
Sbjct: 130 FFFFLSSGSADYKLQLSYENIWQVVLHRPYGQNAQFLLIQLFGAPRIYKRLENS------ 183
Query: 734 WIAEFFKFGSDNQWIRTTDFTRNFSIGNSTSICLELLDGAKDAVIKNSFYNYKDIRENLS 913
FFK D+QW+RTTDFT ++ IG S+S+CL+ G + SF++Y + N++
Sbjct: 184 -CYSFFKETPDDQWVRTTDFTPSW-IGLSSSLCLQFRRGVHLPNFQESFFHYAERENNIT 241
Query: 914 LHINXXXXXXXR--LVPSXXXXXXXXXXYKILFQVNALVQEGILSWPALGREFFRLLEPK 1087
L + LVP+ YKILF++++LVQ G + PAL FFRL++P+
Sbjct: 242 LQTGFTFFVSQKSALVPNVQPPEGIAIPYKILFKISSLVQHGCIPGPALNVYFFRLVDPQ 301
Query: 1088 SEEYVGRILFALQEISYSGPT-YTPEKSLKKII--YDKKARRYADFNTYLDDGLMRVHRV 1258
V I AL+++ Y Y P + L + Y K + + LDDGL+ V RV
Sbjct: 302 RRN-VACIEQALEKLYYLKECCYDPVRWLTEQYDGYLKGRQPPKSPSITLDDGLVYVRRV 360
Query: 1259 QVTPTKVYLFGPEVDVSNRVIRQFSEYIDDFIRVSFIDEDERQLFATDLCQKMPNGEKKY 1438
VTP KVY GPEV+VSNRV+R +SE ID+F+RVSF+DE+ +L++T+L K G
Sbjct: 361 LVTPCKVYFCGPEVNVSNRVLRNYSEDIDNFLRVSFVDEEWEKLYSTELLPKASTGNGIR 420
Query: 1439 TKLYLRILSXXXXXXXXXXXXFEFLAFSSSQLRESSLWMFASNEQVTAETIRAWMGNFLS 1618
T +Y RILS FEFLAFSSSQLR++S+WMFAS +T IR+WMG+F
Sbjct: 421 TNIYERILSTLRKGFVIGDKKFEFLAFSSSQLRDNSVWMFASRRGLTTNDIRSWMGDFSQ 480
Query: 1619 IRNVAKCAARMGQCFSSSKKTLCVYESEVEDCNDITIERDSDSYVFSDGIGKISVALAEE 1798
I+NVAK AAR+GQ F SS++TL V E+E D+ + SYVFSDGIGKIS A
Sbjct: 481 IKNVAKYAARLGQSFGSSRETLSVLRHEIEVIPDVKVH--GTSYVFSDGIGKISADFARR 538
Query: 1799 LAVHCGCDYVPSAFQIRYGGYKGVVAMDPTSSYKLSLRPSMRKFDSENRNVDVLSWTKFR 1978
+A CG Y PSAFQIRYGGYKGVVA+DP SS KLSLR SM K++S+N +DVL W+K++
Sbjct: 539 VASKCGLQYTPSAFQIRYGGYKGVVAVDPYSSMKLSLRKSMSKYESDNNKLDVLGWSKYQ 598
Query: 1979 PCFLNRQIITLLSTLGVRDQRFENLQQEDINRLDLILDHKDMALEVLQIMSGGENHNVII 2158
PC+LNRQ++TLLSTLGV+D E Q+E +++LD IL A E L++MS GEN N++
Sbjct: 599 PCYLNRQLVTLLSTLGVKDDVLEQKQKEAVHQLDAILHDSLKAQEALELMSPGENTNILK 658
Query: 2159 NMLRCGYSPKDEPYLSMVLHAFRAAKLLELKHKARIFVPKGRCLMGCLDEYRILEYGEIF 2338
ML CGY P EP+LSM+L FRA+KLL+L+ ++RIF+P GR +MGCLDE R LEYG++F
Sbjct: 659 AMLNCGYMPDAEPFLSMMLQTFRASKLLDLRTRSRIFIPNGRAMMGCLDESRTLEYGQVF 718
Query: 2339 VQVT-----EPRSSLHFGTTGNQTSIRKRIITGTVIVAKNPCLHPGDVRILRAVDDPRLH 2503
VQ T E LH T+ I+ G V+VAKNPCLHPGD+R+LRAVD P LH
Sbjct: 719 VQFTGAGHREFSEDLHPFNNSRSTNCNF-ILKGNVVVAKNPCLHPGDIRVLRAVDVPALH 777
Query: 2504 HLVDCVVFPQKGKRPHPNECSGSDLDGDLYFVCWDESLIPPDVDMPMDYAAPPQISLNRP 2683
H+VDCVVFPQKGKRPHPNECSGSDLDGD+YFVCWD+ +IPP M+Y P I L+
Sbjct: 778 HMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVCWDQDMIPPRQVQAMEYPPAPSIQLDHN 837
Query: 2684 VTIEDIQEFFANYMLNDSIGIISARHTVFADSDQEMARSDNCLKLAQLFTLAVDFPKTGV 2863
VTIE+++E+F NY++NDS+GII+ H VFAD + +MA SD C KLA+LF++AVDFPKTGV
Sbjct: 838 VTIEEVEEYFTNYIVNDSLGIIANAHVVFADREPDMAMSDPCKKLAELFSIAVDFPKTGV 897
Query: 2864 PAKIPSDLVPREYPDFMEK-EDKPTYISKRVIGKLYRAVKDHATQSLTISSFTKEVAYKA 3040
PA+IPS L P+EYPDFM+K DK TYIS+RVIGKL+R VKD A Q+ +I+ FT++VA ++
Sbjct: 898 PAEIPSQLRPKEYPDFMDKPPDKTTYISERVIGKLFRKVKDKAPQASSIAIFTRDVARRS 957
Query: 3041 YDRDLEVGAYKDYIDAAFVCKNLYDSSLLSIMHRYGIRYEAEIVSGNIFSLSKFHGSKLS 3220
YD DLEV ++DYID AF K YD+ L ++M YGI+ EAEI+SG I SK +
Sbjct: 958 YDADLEVDGFEDYIDEAFDYKTEYDNKLGNLMDYYGIKTEAEILSGGIMKASKTFDRRKD 1017
Query: 3221 DVRELLLTEVKSLQRETRSWFDA--DVRELEANEYDLASAWYHITYHPYYWG-YGENDDS 3391
E + V++L++E R+WF D+ ++ ASAWYH+TYHP YWG Y +
Sbjct: 1018 --AEAISVAVRALRKEARTWFKRRNDIDDM----LPKASAWYHVTYHPTYWGCYNQG--- 1068
Query: 3392 DYRNPHLISFPWTVYDKLLRIKRNKTR 3472
+ H ISFPW VYD+L++IK+ K R
Sbjct: 1069 -LKRDHFISFPWCVYDQLIQIKKEKAR 1094
>ref|XP_006306626.1| hypothetical protein CARUB_v10008144mg [Capsella rubella]
gi|482575337|gb|EOA39524.1| hypothetical protein
CARUB_v10008144mg [Capsella rubella]
Length = 1107
Score = 934 bits (2413), Expect = 0.0
Identities = 537/1132 (47%), Positives = 714/1132 (63%), Gaps = 24/1132 (2%)
Frame = +2
Query: 170 RTVKITHIPLGTDANQLTTLLEGILQEKGCVYSAKIL--KQTNPRHVYAHAIVQLDRSFL 343
+T+++ P+G + + + LE L G VY+ K+ K+ PR AIVQ
Sbjct: 3 KTIQVFGFPVGVNTDDVKIFLER-LTGSGTVYAIKVRQPKRGGPR---VFAIVQFTSERH 58
Query: 344 ARKLCTTLPASTL------MQATVLPRDMVSKPRESTVHIATRRLHFGCQVSHNRYAVLW 505
AR L T+ A L ++A + +D+V KPR S I+ +++FGCQVS + LW
Sbjct: 59 AR-LIITMAAERLYYGRSYLKAFEMEQDIVPKPRASLHSISNLKMYFGCQVSPKKLLTLW 117
Query: 506 TCDSDVQFEFASDIKKLFIELTDRGISYRLVLSFGNVRYMHRYSTDSSRRTYLVIQVYCA 685
+ + V F + ++KL ++ YRL LS+ N+ + +S +LVIQV A
Sbjct: 118 SAHN-VCVSFGTGMRKLHFSMSWYQKDYRLELSYENIWQIDLHSPQGGSSKFLVIQVIGA 176
Query: 686 PKIYYKEPSSDMGDGLWIAEFFKFGSDNQWIRTTDFTRNFSIGNSTSICLELLDGAKDAV 865
PKI+ KE + + +F+ GSD QWIRTTDFT + IG ST+ CLEL
Sbjct: 177 PKIFEKE-DQPVNFLFGMMDFYSDGSDEQWIRTTDFTSSSCIGQSTAFCLELPVHVHVPD 235
Query: 866 IKNSFYNYKDIRENLSL--HINXXXXXXXRLVPSXXXXXXXXXXYKILFQVNALVQEGIL 1039
+ +F NY + R + L + +LVP ++ILF+VN LVQ L
Sbjct: 236 FRENFANYAEHRASTFLIQSGSSYSSNANKLVPVVDPPPGFDLPFEILFKVNTLVQNACL 295
Query: 1040 SWPALGREFFRLLEPKSEE-----YVGRILFALQEISYSGPTYTPEKSLKKIIYDKKARR 1204
PAL EF++LL PK + + LF L E Y + E+ KK+ KK
Sbjct: 296 PGPALDLEFYQLLNPKKYDRALIDHSLEKLFHLGECCYEPARWLREE-YKKLNSSKKLPL 354
Query: 1205 YADFNTYLDDGLMRVHRVQVTPTKVYLFGPEVDVSNRVIRQFSEYIDDFIRVSFIDEDER 1384
+ LDDGL+ ++RV VTP +VY GPEV+VSNRV+R +SEYI++F+R+SF+DED
Sbjct: 355 SPTIS--LDDGLVYIYRVLVTPARVYFLGPEVNVSNRVLRHYSEYINNFLRISFVDEDLE 412
Query: 1385 QLFATDLCQKMPNGEKKYTKLYLRILSXXXXXXXXXXXXFEFLAFSSSQLRESSLWMFAS 1564
++ + DL + + ++ TKLY RI S FEFLAFSSSQLRE+S WMFA
Sbjct: 413 KIHSMDLSPR--SSTQRRTKLYDRIYSVLRDGIVIGDKKFEFLAFSSSQLRENSAWMFAP 470
Query: 1565 NEQVTAETIRAWMGNFLSIRNVAKCAARMGQCFSSSKKTLCVYESEVEDCNDITIERDSD 1744
+++TA IRAWMG+F IRNVAK AAR+GQ FSSS++TL V E+E D+
Sbjct: 471 RDRLTAAHIRAWMGDFDHIRNVAKYAARLGQSFSSSRETLNVRSDEIEVIPDVEAMYLDT 530
Query: 1745 SYVFSDGIGKISVALAEELAVHCGC-DYVPSAFQIRYGGYKGVVAMDPTSSYKLSLRPSM 1921
YVFSDGIGKIS A ++A CG ++ PSAFQIRYGGYKGVVA+DP SS KLSLR SM
Sbjct: 531 RYVFSDGIGKISAEFARKVAKKCGLTEFSPSAFQIRYGGYKGVVAVDPNSSKKLSLRKSM 590
Query: 1922 RKFDSENRNVDVLSWTKFRPCFLNRQIITLLSTLGVRDQRFENLQQEDINRLDLILDHKD 2101
KF+S N +DVL+W+K++PC+LNRQIITLLSTLGV+D FE Q+E ++RLD IL
Sbjct: 591 SKFESGNTKLDVLAWSKYQPCYLNRQIITLLSTLGVKDNVFEKKQREVVDRLDAILTDPL 650
Query: 2102 MALEVLQIMSGGENHNVIINMLRCGYSPKDEPYLSMVLHAFRAAKLLELKHKARIFVPKG 2281
A E L +M+ GEN N++ +L CGY P EP+LSM+L FRA+KLLEL+ K RIF+P G
Sbjct: 651 EAHEALGLMAPGENTNILKQLLLCGYKPDAEPFLSMMLQNFRASKLLELRTKTRIFIPGG 710
Query: 2282 RCLMGCLDEYRILEYGEIFVQVTEPRSSLHFGTTGNQTSIRKR-IITGTVIVAKNPCLHP 2458
R +MGCLDE R LEYG++ VQ + P T KR IITG V+VAKNPCLHP
Sbjct: 711 RSMMGCLDETRTLEYGQVVVQYSNP------------TMPGKRYIITGPVVVAKNPCLHP 758
Query: 2459 GDVRILRAVDDPRLHHLVDCVVFPQKGKRPHPNECSGSDLDGDLYFVCWDESLIPPDVDM 2638
GDVR+L+AV+ P L+H+VDCVVFPQKG RPHPNECSGSDLDGD+YF+CWD LIPP
Sbjct: 759 GDVRVLQAVNVPALYHMVDCVVFPQKGSRPHPNECSGSDLDGDIYFICWDHELIPPRTSE 818
Query: 2639 PMDYAAPPQISLNRPVTIEDIQEFFANYMLNDSIGIISARHTVFADSDQEMARSDNCLKL 2818
PMDY P L+ VTIE+++E+FANY++NDS+GII+ HT FAD + A SD C++L
Sbjct: 819 PMDYTPEPAQILDHDVTIEEVEEYFANYIVNDSLGIIANAHTAFADKEPLKAFSDPCIEL 878
Query: 2819 AQLFTLAVDFPKTGVPAKIPSDLVPREYPDFMEKEDKPTYISKRVIGKLYRAVKDHATQS 2998
A+ F++AVDFPKTG+ A+IP L +EYPDFM+K DKPTY SK VIGKL+R VK+ A
Sbjct: 879 ARKFSIAVDFPKTGIAAEIPQHLYVKEYPDFMDKPDKPTYESKNVIGKLFREVKERAPPL 938
Query: 2999 LTISSFTKEVAYKAYDRDLEVGAYKDYIDAAFVCKNLYDSSLLSIMHRYGIRYEAEIVSG 3178
++I SFT +VA K+YD+D+EV +++YID AF K YD L ++M YGI+ EAEI+SG
Sbjct: 939 ISIRSFTLDVALKSYDKDMEVEGFEEYIDEAFFHKGNYDYRLGNLMDYYGIKTEAEILSG 998
Query: 3179 NIFSLSKFHGSKLSDVRELLLTEVKSLQRETRSWFDADVRELEANEYDLASAWYHITYHP 3358
I +SK +K D E + V++L++E SWF+ + + +E ASAWYH+TYH
Sbjct: 999 GIMRMSKSF-TKRRDA-ESIGRAVRALRKEALSWFNNAEDKNDFDESAKASAWYHVTYHS 1056
Query: 3359 YYWG-YGENDDSDYRNPHLISFPWTVYDKLLRIK------RNKTRGSDQLGK 3493
YWG Y E + D H +SF W VYDKL+RIK R + +QLG+
Sbjct: 1057 SYWGVYNEGLNRD----HFLSFAWCVYDKLVRIKKANVGRRQRQEALEQLGR 1104
>ref|XP_002281315.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Vitis vinifera]
Length = 1109
Score = 932 bits (2410), Expect = 0.0
Identities = 527/1124 (46%), Positives = 700/1124 (62%), Gaps = 25/1124 (2%)
Frame = +2
Query: 170 RTVKITHIPLGTDANQLTTLLEGILQEKGCVYSAKILKQTNPRHVYAHAIVQLDRSFLAR 349
+T+++ +P AN++ LE E G + + +I KQ HA VQ LA
Sbjct: 3 KTIQVYGVPSNVSANEIKEFLEKYTGE-GTIEALEI-KQPKSGVSMTHAKVQFTSLRLAE 60
Query: 350 KLCTTLP----ASTLMQATVLPRDMVSKPRESTVHIATRRLHFGCQVSHNRYAVLWTCDS 517
+ + ++A + D++ KPR + LHFG Q+S+ R+ VLW
Sbjct: 61 LIISLAKQLWYGGNYLKAREMDLDIIPKPRTFLHSMDRITLHFGYQMSNERFCVLWKA-I 119
Query: 518 DVQFEFASDIKKLFIELTDRGISYRLVLSFGNVRYMHRYSTDSSRRTYLVIQVYCAPKIY 697
+V +F ++K + L+ Y+L LS N+ + +L+IQ+ AP+IY
Sbjct: 120 NVSVKFGFGLRKFYFFLSHGSEEYKLELSCENIWQIQLREPRGQNTKFLLIQLLDAPQIY 179
Query: 698 YKEPSSDMGDGLWIAEFFKFGSDNQWIRTTDFTRNFSIGNSTSICLELLDGAKDAVIKNS 877
K+ S+ +FK D+QW+R DFT + SIG S+++CLEL G++ +
Sbjct: 180 EKDVSA--------LSYFKETPDDQWVREIDFTPSCSIGQSSALCLELPHGSQLPNFCEN 231
Query: 878 FYNYKDIRENLSLHINXXXXXXXRLVPSXXXXXXXXXXYKILFQVNALVQEGILSWPALG 1057
F YK+ L LVP +KILF++N LVQ G LS P L
Sbjct: 232 FARYKENDRKFILESGASFSGNLHLVPIVGPPQGSNLPFKILFKINTLVQNGCLSGPTLD 291
Query: 1058 REFFRLLEPKSEEYVGRILFALQEISYSGPTYTPEKSLKKIIYDKKARRYADFNTY---- 1225
FFR ++P+ + I AL+++ Y L++ Y+ + + TY
Sbjct: 292 TNFFRWVDPQRIN-ISFIEHALEKLYY----------LEECCYEPVRWLHEQYRTYISKQ 340
Query: 1226 --------LDDGLMRVHRVQVTPTKVYLFGPEVDVSNRVIRQFSEYIDDFIRVSFIDEDE 1381
LD GL+ V RVQ+TP KVY GPEV+VSNRV+R + E ID+F+RVSF+DE+
Sbjct: 341 VAGSPAISLDTGLVYVRRVQITPCKVYFCGPEVNVSNRVLRNYPEDIDNFLRVSFLDENS 400
Query: 1382 RQLFATDLCQKMPNGEKKYTKLYLRILSXXXXXXXXXXXXFEFLAFSSSQLRESSLWMFA 1561
++ +T + +M N E + T +Y RILS F+FLA SSSQLR++S WMFA
Sbjct: 401 EKIHSTVISPRMSN-EGRRTGVYRRILSILQNGIVIGDKKFDFLAVSSSQLRDNSAWMFA 459
Query: 1562 SNEQVTAETIRAWMGNFLSIRNVAKCAARMGQCFSSSKKTLCVYESEVEDCNDITIERDS 1741
S +TA IR+ MG+F IRNVAK AAR+GQ FSSSK+TL V + E+E DI RD
Sbjct: 460 SRPGLTAADIRSRMGDFSQIRNVAKYAARLGQSFSSSKETLKVAKHEIEIIPDIETHRDG 519
Query: 1742 DSYVFSDGIGKISVALAEELAVHCGC-DYVPSAFQIRYGGYKGVVAMDPTSSYKLSLRPS 1918
+YVFSDGIGKIS LA +A+ CGC + PSAFQIRYGGYKGVVA+DPTSS KLSLR S
Sbjct: 520 TTYVFSDGIGKISAELAHRVAIKCGCKNSTPSAFQIRYGGYKGVVAVDPTSSRKLSLRKS 579
Query: 1919 MRKFDSENRNVDVLSWTKFRPCFLNRQIITLLSTLGVRDQRFENLQQEDINRLDLILDHK 2098
M K++SEN N+DVLSW+K+RPCFLNRQ+ITLLSTLGV+D FE Q+E +++LD IL
Sbjct: 580 MFKYESENTNLDVLSWSKYRPCFLNRQLITLLSTLGVKDHVFEKKQREAVDQLDTILKDP 639
Query: 2099 DMALEVLQIMSGGENHNVIINMLRCGYSPKDEPYLSMVLHAFRAAKLLELKHKARIFVPK 2278
A E L++MS GEN N++ ML CGY P EP+LSM+L FRAAKLLEL+ K RIFVP
Sbjct: 640 LRAQEALELMSPGENTNILKEMLMCGYKPDAEPFLSMMLQTFRAAKLLELRTKTRIFVPN 699
Query: 2279 GRCLMGCLDEYRILEYGEIFVQVTEPRSSLHFGTT----GNQTSIRKRIITGTVIVAKNP 2446
GR +MGCLDE R LEYGE+FVQ++ FG + G+ + I+ G V+VAKNP
Sbjct: 700 GRSMMGCLDETRTLEYGEVFVQISGTGGRQSFGDSLMFYGSGSHHDNFILEGKVVVAKNP 759
Query: 2447 CLHPGDVRILRAVDDPRLHHLVDCVVFPQKGKRPHPNECSGSDLDGDLYFVCWDESLIPP 2626
CLHPGDVRIL AVD P LHH+VDCVVFPQKG RPHP+ECSGSDLDGD+YFVCWD LIPP
Sbjct: 760 CLHPGDVRILSAVDVPALHHMVDCVVFPQKGMRPHPDECSGSDLDGDIYFVCWDHDLIPP 819
Query: 2627 DVDMPMDYAAPPQISLNRPVTIEDIQEFFANYMLNDSIGIISARHTVFADSDQEMARSDN 2806
PMDY P L+ V IE+++E+F NY+ ND +GII+ HTVFAD + + A
Sbjct: 820 RQINPMDYTPAPTKVLDHDVMIEEVEEYFTNYIGNDKLGIIANAHTVFADKEYDKALCPP 879
Query: 2807 CLKLAQLFTLAVDFPKTGVPAKIPSDLVPREYPDFMEKEDKPTYISKRVIGKLYRAVKDH 2986
C +LA+LF++A++FPKTGVPA+IP L +EYPDFMEK +KPTY S+ VIGKL+R VKD
Sbjct: 880 CKELAKLFSIALEFPKTGVPAEIPFHLHVKEYPDFMEKANKPTYESQSVIGKLFREVKDV 939
Query: 2987 ATQSLTISSFTKEVAYKAYDRDLEVGAYKDYIDAAFVCKNLYDSSLLSIMHRYGIRYEAE 3166
A + + SFT++VA ++YD D+EV ++DY+ AF K+ YD L S+M GIR E+E
Sbjct: 940 APHNYDVRSFTRDVAMQSYDADMEVDGFEDYVRDAFYYKSQYDFKLGSLMDCCGIRTESE 999
Query: 3167 IVSGNIFSLSKFHGSKLSDVRELLLTEVKSLQRETRSWFDADVRELEA---NEYDLASAW 3337
I+SG+I +SK K D + L V+SL++E R+WF+ A + Y +ASAW
Sbjct: 1000 ILSGSIMKMSKSF-DKRKDAEAIALA-VRSLRKEARTWFNKMGSGTYAGADDVYAIASAW 1057
Query: 3338 YHITYHPYYWG-YGENDDSDYRNPHLISFPWTVYDKLLRIKRNK 3466
YH+TYHPYYWG Y E D H +SFPW VYDKL++IKR+K
Sbjct: 1058 YHVTYHPYYWGCYNEGMYHD----HFLSFPWCVYDKLIQIKRDK 1097
>gb|ABV24845.1| RNA-dependent RNA polymerase [Nicotiana glutinosa]
gi|209420668|gb|ACI46982.1| RNA-dependent RNA polymerase
[Nicotiana glutinosa]
Length = 1117
Score = 931 bits (2407), Expect = 0.0
Identities = 515/1122 (45%), Positives = 700/1122 (62%), Gaps = 21/1122 (1%)
Frame = +2
Query: 170 RTVKITHIPLGTDANQLTTLLEGILQEKGCVYSAKILKQTNPRHVYAHAIVQLDRSFLAR 349
+T+++ P A + T LE G VY+ ++ + R +A VQ + A
Sbjct: 3 KTIQVFGFPYLLSAEAVKTFLENHTGN-GTVYALEVKQSKGGRRAFAK--VQFANNKSAE 59
Query: 350 KLCTTLPASTLMQATVLP----RDMVSKPRESTVHIATRRLHFGCQVSHNRYAVLWTCDS 517
+ + L + + +PR H+ L+FGCQ+S ++AVL +
Sbjct: 60 IIIDLASKGLYYGPSYLKAWEMKTYIVQPRTYVQHMDGVTLNFGCQISDKKFAVLGS--K 117
Query: 518 DVQFEFASDIKKLFIELTDRGISYRLVLSFGNVRYMHRYSTDSSRRTYLVIQVYCAPKIY 697
V +F +KK++ L+ Y+L LS+ N+ + + + +L++Q+ AP+IY
Sbjct: 118 VVSIKFGIGLKKIYFFLSYGSTDYKLQLSYENIWQVVLHRPYGQKAQFLLLQLSGAPRIY 177
Query: 698 YKEPSSDMGDGLWIAEFFKFGSDNQWIRTTDFTRNFSIGNSTSICLELLDGAKDAVIKNS 877
+ S FFK D+QW+RTTDFT ++ IG S+S+CLE +G + S
Sbjct: 178 KRLEDS-------CYSFFKETPDDQWVRTTDFTPSW-IGLSSSLCLEFHNGVRLPNFSES 229
Query: 878 FYNYKDIRENLSLHINXXXXXXXR---LVPSXXXXXXXXXXYKILFQVNALVQEGILSWP 1048
F+ YK+ + L + LVP YKILF++++L+Q G
Sbjct: 230 FFYYKESANQVILQTGFTFSFSQKKLALVPIVHLPEGIELPYKILFKISSLIQHGCFPGL 289
Query: 1049 ALGREFFRLLEPKSE-----EYVGRILFALQEISYSGPTYTPEKSLKKIIYDKKARRYAD 1213
AL FF+L++P+ E+ L+ L+E Y + E+ + Y K+ +
Sbjct: 290 ALNFNFFQLVDPRRRNIACIEHALEKLYYLKECCYDPVRWLTEQYDE---YLKRRQLPKS 346
Query: 1214 FNTYLDDGLMRVHRVQVTPTKVYLFGPEVDVSNRVIRQFSEYIDDFIRVSFIDEDERQLF 1393
+ LDDGL+ V RV VTP KVY GPEV+VSNRV+R +SE ID+F+RVSF+DE+ ++
Sbjct: 347 PSITLDDGLVYVRRVLVTPCKVYFCGPEVNVSNRVLRNYSEDIDNFLRVSFVDEEWEKIH 406
Query: 1394 ATDLCQKMPNGEKKYTKLYLRILSXXXXXXXXXXXXFEFLAFSSSQLRESSLWMFASNEQ 1573
+TDL + G T +YLRILS FEFLAFSSSQLR++S+WMFAS
Sbjct: 407 STDLLPRASTGNGVRTDIYLRILSTLRNGFVIGDKKFEFLAFSSSQLRDNSVWMFASRPG 466
Query: 1574 VTAETIRAWMGNFLSIRNVAKCAARMGQCFSSSKKTLCVYESEVEDCNDITIERDSDSYV 1753
+TA IR WMG F IRNVAK AAR+GQ F SS++TL V EVE D+ +Y+
Sbjct: 467 LTANDIRTWMGGFQQIRNVAKYAARLGQSFGSSRETLSVGRHEVEVIPDVVCSLHGTNYI 526
Query: 1754 FSDGIGKISVALAEELAVHCGCDYVPSAFQIRYGGYKGVVAMDPTSSYKLSLRPSMRKFD 1933
FSDGIGKIS A +AV CG Y PS FQIRYGGYKGVVA+DP SS KLSLR SM K++
Sbjct: 527 FSDGIGKISADFARRVAVKCGLQYTPSCFQIRYGGYKGVVAVDPYSSMKLSLRNSMLKYE 586
Query: 1934 SENRNVDVLSWTKFRPCFLNRQIITLLSTLGVRDQRFENLQQEDINRLDLILDHKDMALE 2113
S N +DVL W+K++PC+LNRQ++TLLSTLGV+D FE Q E +++LD IL A E
Sbjct: 587 SNNIKLDVLGWSKYQPCYLNRQLVTLLSTLGVKDDVFEQKQNEAVDQLDAILHDTLKAQE 646
Query: 2114 VLQIMSGGENHNVIINMLRCGYSPKDEPYLSMVLHAFRAAKLLELKHKARIFVPKGRCLM 2293
L++MS GEN N++ ML CGY P EP+LSM+L FRA+KLL+L+ ++RIF+P GR +M
Sbjct: 647 ALELMSPGENTNILKEMLNCGYMPDAEPFLSMMLQTFRASKLLDLRTRSRIFIPNGRTMM 706
Query: 2294 GCLDEYRILEYGEIFVQVTEP------RSSLHFGTTGNQTSIRKRIITGTVIVAKNPCLH 2455
GCLDE R LEYG++FVQ T S F +G+ I+ G V+VAKNPCLH
Sbjct: 707 GCLDESRTLEYGQVFVQFTGTGRRQFYEESHPFNDSGSTNC--DFILEGNVVVAKNPCLH 764
Query: 2456 PGDVRILRAVDDPRLHHLVDCVVFPQKGKRPHPNECSGSDLDGDLYFVCWDESLIPPDVD 2635
PGD+R+LRAVD P LHH+VDCVVFPQKGKRPHPNECSGSDLDGD+YFVCWD L+PP
Sbjct: 765 PGDIRVLRAVDVPALHHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVCWDPDLVPPRQF 824
Query: 2636 MPMDYAAPPQISLNRPVTIEDIQEFFANYMLNDSIGIISARHTVFADSDQEMARSDNCLK 2815
PMDY P L+ VTIE+++E+F NY++NDS+GII+ H VFAD + +MA SD C +
Sbjct: 825 QPMDYTPAPSTQLDHDVTIEEVEEYFTNYIVNDSLGIIANAHVVFADREPDMAMSDPCKQ 884
Query: 2816 LAQLFTLAVDFPKTGVPAKIPSDLVPREYPDFMEKEDKPTYISKRVIGKLYRAVKDHATQ 2995
LAQLF++AVDFPKTGVPA+IPS L P+EYPDFMEK DKPTY S++VIGKL++ VKD Q
Sbjct: 885 LAQLFSIAVDFPKTGVPAEIPSQLRPKEYPDFMEKPDKPTYHSEKVIGKLFQKVKDKTPQ 944
Query: 2996 SLTISSFTKEVAYKAYDRDLEVGAYKDYIDAAFVCKNLYDSSLLSIMHRYGIRYEAEIVS 3175
+ +I++FT +VA K+YD D+ V ++DYID AF K+ YD+ L ++M YGI+ EAEI+S
Sbjct: 945 ASSIANFTMDVARKSYDGDMIVNGFEDYIDEAFYYKSEYDNKLGNLMDYYGIKTEAEILS 1004
Query: 3176 GNIFSLSK-FHGSKLSDVRELLLTEVKSLQRETRSWFD--ADVRELEANEYDLASAWYHI 3346
G I SK F K +D + V+SL++E R+WF +D+ ++ A ASAWYH+
Sbjct: 1005 GGIMKASKTFDRRKDADA---IGVAVRSLRKEARTWFKRRSDIDDMLAK----ASAWYHV 1057
Query: 3347 TYHPYYWGYGENDDSDYRNPHLISFPWTVYDKLLRIKRNKTR 3472
TYH YWG+ + + H ISFPW +YD+L++IK+ K R
Sbjct: 1058 TYHHTYWGF---YNEGLKRDHFISFPWCIYDQLIQIKKAKAR 1096
>ref|NP_172932.1| RNA-dependent RNA polymerase 1 [Arabidopsis thaliana]
gi|75335341|sp|Q9LQV2.1|RDR1_ARATH RecName:
Full=RNA-dependent RNA polymerase 1; Short=AtRDRP1;
AltName: Full=RNA-directed RNA polymerase 1
gi|8778232|gb|AAF79241.1|AC006917_26 F10B6.19
[Arabidopsis thaliana] gi|110737376|dbj|BAF00633.1|
putative RNA-directed RNA polymerase [Arabidopsis
thaliana] gi|332191105|gb|AEE29226.1| RNA-dependent RNA
polymerase 1 [Arabidopsis thaliana]
Length = 1107
Score = 927 bits (2397), Expect = 0.0
Identities = 534/1113 (47%), Positives = 702/1113 (63%), Gaps = 16/1113 (1%)
Frame = +2
Query: 170 RTVKITHIPLGTDANQLTTLLEGILQEKGCVYSAKIL--KQTNPRHVYAHAIVQLDRSFL 343
+T+++ P G A ++ LE L G VY+ K+ K+ PR +AIVQ
Sbjct: 3 KTIQVFGFPNGVSAEEVKKFLER-LTGSGTVYAIKVRQPKKGGPR---VYAIVQFTSERH 58
Query: 344 ARKLCTTLP-----ASTLMQATVLPRDMVSKPRESTVHIATRRLHFGCQVSHNRYAVLWT 508
R + T + ++A + +D+V KPR S I+ ++ FGCQVS ++ LW+
Sbjct: 59 TRLIITAAAERLYYGRSYLKAFEVEQDIVPKPRASLHTISGLKMFFGCQVSTKKFLTLWS 118
Query: 509 CDSDVQFEFASDIKKLFIELTDRGISYRLVLSFGNVRYMHRYSTDSSRRTYLVIQVYCAP 688
DV F ++KL + YRL LS+ N+ + +S +LVIQV AP
Sbjct: 119 AQ-DVCVSFGIGMRKLHFSFSWYQKDYRLELSYENIWQIDLHSPQGRSSKFLVIQVIGAP 177
Query: 689 KIYYKEPSSDMGDGLWIAEFFKFGSDNQWIRTTDFTRNFSIGNSTSICLELLDGAKDAVI 868
KI+ KE + I +F+ GSD QWIRTTDFT + IG ST+ CLEL
Sbjct: 178 KIFEKE-DQPINLLFGIMDFYSDGSDEQWIRTTDFTSSSCIGQSTAFCLELPVHLNVPDF 236
Query: 869 KNSFYNYKDIRENLSL--HINXXXXXXXRLVPSXXXXXXXXXXYKILFQVNALVQEGILS 1042
+ +F NY + R + L + LVP ++ILF++N LVQ LS
Sbjct: 237 RENFANYAEHRASSFLIESGSSYSSNANTLVPVVDPPPGFSLPFEILFKLNTLVQNACLS 296
Query: 1043 WPALGREFFRLLEPKSEE-----YVGRILFALQEISYSGPTYTPEKSLKKIIYDKKARRY 1207
PAL +F+RLL K + + LF L E Y P + KK I K +
Sbjct: 297 GPALDLDFYRLLNQKKYDRALIDHCLEKLFHLGECCYE-PAHWLRDEYKKWI--SKGKLP 353
Query: 1208 ADFNTYLDDGLMRVHRVQVTPTKVYLFGPEVDVSNRVIRQFSEYIDDFIRVSFIDEDERQ 1387
LDDGL+ ++RVQVTP +VY GPEV+VSNRV+R +S+YI++F+RVSF+DED +
Sbjct: 354 LSPTISLDDGLVYMYRVQVTPARVYFSGPEVNVSNRVLRHYSKYINNFLRVSFVDEDLEK 413
Query: 1388 LFATDLCQKMPNGEKKYTKLYLRILSXXXXXXXXXXXXFEFLAFSSSQLRESSLWMFASN 1567
+ + DL + + ++ TKLY RI S FEFLAFSSSQLRE+S WMFA
Sbjct: 414 VRSMDLSPR--SSTQRRTKLYDRIYSVLRDGIVIGDKKFEFLAFSSSQLRENSAWMFAPI 471
Query: 1568 EQVTAETIRAWMGNFLSIRNVAKCAARMGQCFSSSKKTLCVYESEVEDCNDITIERDSDS 1747
+++TA IRAWMG+F IRNVAK AAR+GQ FSSS++TL V E+E D+ I
Sbjct: 472 DRITAAHIRAWMGDFDHIRNVAKYAARLGQSFSSSRETLNVRSDEIEVIPDVEIISLGTR 531
Query: 1748 YVFSDGIGKISVALAEELAVHCGC-DYVPSAFQIRYGGYKGVVAMDPTSSYKLSLRPSMR 1924
YVFSDGIGKIS A ++A CG ++ PSAFQIRYGGYKGVVA+DP SS KLSLR SM
Sbjct: 532 YVFSDGIGKISAEFARKVARKCGLTEFSPSAFQIRYGGYKGVVAVDPNSSKKLSLRKSMS 591
Query: 1925 KFDSENRNVDVLSWTKFRPCFLNRQIITLLSTLGVRDQRFENLQQEDINRLDLILDHKDM 2104
KF+SEN +DVL+W+K++PC++NRQ+ITLLSTLGV D FE Q+E ++RLD IL H
Sbjct: 592 KFESENTKLDVLAWSKYQPCYMNRQLITLLSTLGVTDSVFEKKQREVVDRLDAILTHPLE 651
Query: 2105 ALEVLQIMSGGENHNVIINMLRCGYSPKDEPYLSMVLHAFRAAKLLELKHKARIFVPKGR 2284
A E L +M+ GEN N++ ++ CGY P EP+LSM+L FRA+KLLEL+ K RIF+ GR
Sbjct: 652 AHEALGLMAPGENTNILKALILCGYKPDAEPFLSMMLQNFRASKLLELRTKTRIFISGGR 711
Query: 2285 CLMGCLDEYRILEYGEIFVQVTEPRSSLHFGTTGNQTSIRKRIITGTVIVAKNPCLHPGD 2464
+MGCLDE R LEYG++ VQ ++P R+ IITG V+VAKNPCLHPGD
Sbjct: 712 SMMGCLDETRTLEYGQVVVQYSDP-----------MRPGRRFIITGPVVVAKNPCLHPGD 760
Query: 2465 VRILRAVDDPRLHHLVDCVVFPQKGKRPHPNECSGSDLDGDLYFVCWDESLIPPDVDMPM 2644
VR+L+AV+ P L+H+VDCVVFPQKG RPHPNECSGSDLDGD+YFVCWD+ L+PP PM
Sbjct: 761 VRVLQAVNVPALNHMVDCVVFPQKGLRPHPNECSGSDLDGDIYFVCWDQELVPPRTSEPM 820
Query: 2645 DYAAPPQISLNRPVTIEDIQEFFANYMLNDSIGIISARHTVFADSDQEMARSDNCLKLAQ 2824
DY P L+ VTIE+++E+FANY++NDS+GII+ HT FAD + A SD C++LA+
Sbjct: 821 DYTPEPTQILDHDVTIEEVEEYFANYIVNDSLGIIANAHTAFADKEPLKAFSDPCIELAK 880
Query: 2825 LFTLAVDFPKTGVPAKIPSDLVPREYPDFMEKEDKPTYISKRVIGKLYRAVKDHATQSLT 3004
F+ AVDFPKTGV A IP L +EYPDFMEK DKPTY SK VIGKL+R VK+ A ++
Sbjct: 881 KFSTAVDFPKTGVAAVIPQHLYVKEYPDFMEKPDKPTYESKNVIGKLFREVKERAPPLIS 940
Query: 3005 ISSFTKEVAYKAYDRDLEVGAYKDYIDAAFVCKNLYDSSLLSIMHRYGIRYEAEIVSGNI 3184
I SFT +VA K+YD+D+EV +++Y+D AF K YD L ++M YGI+ EAEI+SG I
Sbjct: 941 IKSFTLDVASKSYDKDMEVDGFEEYVDEAFYQKANYDFKLGNLMDYYGIKTEAEILSGGI 1000
Query: 3185 FSLSKFHGSKLSDVRELLLTEVKSLQRETRSWFDADVRELEANEYDLASAWYHITYHPYY 3364
+SK +K D E + V++L++ET S F+A E E NE ASAWYH+TYH Y
Sbjct: 1001 MRMSKSF-TKRRDA-ESIGRAVRALRKETLSLFNAS--EEEENESAKASAWYHVTYHSSY 1056
Query: 3365 WG-YGENDDSDYRNPHLISFPWTVYDKLLRIKR 3460
WG Y E + D H +SF W VYDKL+RIK+
Sbjct: 1057 WGLYNEGLNRD----HFLSFAWCVYDKLVRIKK 1085
>ref|XP_002892830.1| RNA-dependent RNA polymerase 1 [Arabidopsis lyrata subsp. lyrata]
gi|297338672|gb|EFH69089.1| RNA-dependent RNA polymerase
1 [Arabidopsis lyrata subsp. lyrata]
Length = 1107
Score = 927 bits (2396), Expect = 0.0
Identities = 533/1114 (47%), Positives = 704/1114 (63%), Gaps = 17/1114 (1%)
Frame = +2
Query: 170 RTVKITHIPLGTDANQLTTLLEGILQEKGCVYSAKIL--KQTNPRHVYAHAIVQLDRSFL 343
+T+++ P G A ++ LE L G VY+ K+ K+ PR AIVQ
Sbjct: 3 KTIQVFGFPNGVSAEEVKKFLER-LTGSGTVYAIKVRQPKKGGPR---VFAIVQFTNEIY 58
Query: 344 ARKLCTTLPASTL------MQATVLPRDMVSKPRESTVHIATRRLHFGCQVSHNRYAVLW 505
AR++ T L + A + +D+V KPR S +I+ +++FGCQVS LW
Sbjct: 59 ARQIITGAAERRLYYGRSYLNAFEVEQDIVPKPRASLHNISGLKMYFGCQVSTQTLLTLW 118
Query: 506 TCDSDVQFEFASDIKKLFIELTDRGISYRLVLSFGNVRYMHRYSTDSSRRTYLVIQVYCA 685
+ DV F ++KL + YRL LS+ N+ + +S +LVIQV A
Sbjct: 119 SAQ-DVSVSFGIGMRKLHFSFSWYQKDYRLELSYENIWQIDLHSPQGRSSKFLVIQVIGA 177
Query: 686 PKIYYKEPSSDMGDGLWIAEFFKFGSDNQWIRTTDFTRNFSIGNSTSICLELLDGAKDAV 865
PKI+ KE + + +F+ GSD QWIRTTDFT + IG ST+ CLEL
Sbjct: 178 PKIFEKE-DQPINLLFGMMDFYSDGSDEQWIRTTDFTSSSCIGQSTAFCLELPVHLNVPD 236
Query: 866 IKNSFYNYKDIRENLSL--HINXXXXXXXRLVPSXXXXXXXXXXYKILFQVNALVQEGIL 1039
+ +F NY + R + L + +LVP ++ILF++N LVQ L
Sbjct: 237 FRENFANYAEHRASTYLIESGSSYSSNANKLVPVVDPPPGFDLPFEILFKLNTLVQNACL 296
Query: 1040 SWPALGREFFRLLEPKSEEYVGRILF--ALQEISYSGPT-YTPEKSLKKIIYD--KKARR 1204
PAL + ++LL PK + R L L+++ Y G + Y P + L+K + K +
Sbjct: 297 PGPALDLDVYQLLNPKK---IDRALIDHCLEKLFYLGESCYEPARWLRKQYKELSSKGKL 353
Query: 1205 YADFNTYLDDGLMRVHRVQVTPTKVYLFGPEVDVSNRVIRQFSEYIDDFIRVSFIDEDER 1384
LDDGL+ ++RVQVTP +VY GPEV+VSNRV+R +S+YI++F+RVSF+DED
Sbjct: 354 PLSPTISLDDGLVYMYRVQVTPARVYFSGPEVNVSNRVLRHYSKYINNFLRVSFVDEDLE 413
Query: 1385 QLFATDLCQKMPNGEKKYTKLYLRILSXXXXXXXXXXXXFEFLAFSSSQLRESSLWMFAS 1564
++ + DL + + ++ TKLY RI S FEFLAFSSSQLRE+S WMFA
Sbjct: 414 KVRSMDLSPR--SSTQRRTKLYDRIYSVLRDGIVIGDKKFEFLAFSSSQLRENSAWMFAP 471
Query: 1565 NEQVTAETIRAWMGNFLSIRNVAKCAARMGQCFSSSKKTLCVYESEVEDCNDITIERDSD 1744
E +T+ IRAWMG+F IRNVAK AAR+GQ FSSS++TL V E+E D+ I
Sbjct: 472 IEGLTSAHIRAWMGDFDHIRNVAKYAARLGQSFSSSRETLNVRSDEIEVIPDVEIISLGT 531
Query: 1745 SYVFSDGIGKISVALAEELAVHCGC-DYVPSAFQIRYGGYKGVVAMDPTSSYKLSLRPSM 1921
YVFSDGIGKIS A +A CG ++ PSAFQIRYGGYKGVVA+DP SS KLSLR SM
Sbjct: 532 RYVFSDGIGKISAEFARRVAKKCGLTEFSPSAFQIRYGGYKGVVAVDPNSSKKLSLRKSM 591
Query: 1922 RKFDSENRNVDVLSWTKFRPCFLNRQIITLLSTLGVRDQRFENLQQEDINRLDLILDHKD 2101
KF+SEN +DVL+W+K++PC++NRQ+ITLLSTLGV D FE Q+E ++RLD IL
Sbjct: 592 SKFESENTKLDVLAWSKYQPCYMNRQLITLLSTLGVEDSVFEKKQREVVDRLDAILTDPL 651
Query: 2102 MALEVLQIMSGGENHNVIINMLRCGYSPKDEPYLSMVLHAFRAAKLLELKHKARIFVPKG 2281
A E L +M+ GEN N++ ++ CGY P EP+LSM+L FRA+KLLEL+ K RIF+ G
Sbjct: 652 EAHEALGLMAPGENTNILKALILCGYKPDAEPFLSMMLQNFRASKLLELRTKTRIFISGG 711
Query: 2282 RCLMGCLDEYRILEYGEIFVQVTEPRSSLHFGTTGNQTSIRKRIITGTVIVAKNPCLHPG 2461
R +MGCLDE R LEYG++ VQ ++P R+ IITG V+VAKNPCLHPG
Sbjct: 712 RSMMGCLDETRTLEYGQVVVQYSDP-----------MRPGRRFIITGPVVVAKNPCLHPG 760
Query: 2462 DVRILRAVDDPRLHHLVDCVVFPQKGKRPHPNECSGSDLDGDLYFVCWDESLIPPDVDMP 2641
DVR+L AV+ P L+H+VDCVVFPQKG RPHPNECSGSDLDGD+YFVCWD+ LIPP P
Sbjct: 761 DVRVLEAVNVPALNHMVDCVVFPQKGLRPHPNECSGSDLDGDIYFVCWDQELIPPRTSEP 820
Query: 2642 MDYAAPPQISLNRPVTIEDIQEFFANYMLNDSIGIISARHTVFADSDQEMARSDNCLKLA 2821
MDY P L+ VTIE+++E+FANY++NDS+GII+ HT FAD + A SD C++LA
Sbjct: 821 MDYTPEPAQILDHDVTIEEVEEYFANYIVNDSLGIIANAHTAFADKEPLKAFSDPCIELA 880
Query: 2822 QLFTLAVDFPKTGVPAKIPSDLVPREYPDFMEKEDKPTYISKRVIGKLYRAVKDHATQSL 3001
+ F++AVDFPKTGV A+IP L +EYPDFMEK DKPTY SK VIGKL+R VK+ A +
Sbjct: 881 RKFSVAVDFPKTGVAAEIPQHLYVKEYPDFMEKPDKPTYESKNVIGKLFREVKERAPPLI 940
Query: 3002 TISSFTKEVAYKAYDRDLEVGAYKDYIDAAFVCKNLYDSSLLSIMHRYGIRYEAEIVSGN 3181
+I SFT +VA K+YD+D+EV +++Y+D AF K YD L ++M YGI+ EAEI+SG
Sbjct: 941 SIKSFTLDVALKSYDKDMEVDGFEEYVDEAFHYKANYDFKLGNLMDYYGIKTEAEILSGG 1000
Query: 3182 IFSLSKFHGSKLSDVRELLLTEVKSLQRETRSWFDADVRELEANEYDLASAWYHITYHPY 3361
I +SK +K D E + V++L++ET S F+A E NE ASAWYHITYH
Sbjct: 1001 IMRMSKSF-TKRRDA-ESIGRAVRALRKETLSLFNATEEE---NESAKASAWYHITYHSS 1055
Query: 3362 YWG-YGENDDSDYRNPHLISFPWTVYDKLLRIKR 3460
YWG Y E + D H +SF W VYDKL+RIK+
Sbjct: 1056 YWGLYNEGLNRD----HFLSFAWCVYDKLVRIKK 1085
>ref|XP_006366109.1| PREDICTED: RNA-dependent RNA polymerase 1-like isoform X1 [Solanum
tuberosum] gi|565401229|ref|XP_006366110.1| PREDICTED:
RNA-dependent RNA polymerase 1-like isoform X2 [Solanum
tuberosum]
Length = 1115
Score = 926 bits (2394), Expect = 0.0
Identities = 508/1047 (48%), Positives = 681/1047 (65%), Gaps = 14/1047 (1%)
Frame = +2
Query: 374 STLMQATVLPRDMVSKPRESTVHIATRRLHFGCQVSHNRYAVLWTCDSDVQFEFASDIKK 553
S+ ++A + D+V E H+ L+FGCQ+S +++AVL + ++V +F +KK
Sbjct: 73 SSYLKAREMETDLVQL-WEYVDHMDGITLNFGCQISDDKFAVLGS--TEVSIKFGIGLKK 129
Query: 554 LFIELTDRGISYRLVLSFGNVRYMHRYSTDSSRRTYLVIQVYCAPKIYYKEPSSDMGDGL 733
F L+ Y+L LS+ N+ + + +L+IQ++ AP+IY + +S
Sbjct: 130 FFFFLSSGSADYKLQLSYENIWQVVLHRPYGQNAQFLLIQLFGAPRIYKRLENS------ 183
Query: 734 WIAEFFKFGSDNQWIRTTDFTRNFSIGNSTSICLELLDGAKDAVIKNSFYNYKDIRENLS 913
FFK D+QW+RTTDF ++ IG S+S+CL+ G + SF++Y + N++
Sbjct: 184 -CYSFFKETPDDQWVRTTDFAPSW-IGLSSSLCLQFRRGVHLPNFQESFFHYAERENNIT 241
Query: 914 LHINXXXXXXXR--LVPSXXXXXXXXXXYKILFQVNALVQEGILSWPALGREFFRLLEPK 1087
L + LVP+ YKILF++++LVQ G + PAL FFRL++P+
Sbjct: 242 LQTGFTFFVSQKSALVPNVQPPEGIAIPYKILFKISSLVQHGCIPGPALNVYFFRLVDPQ 301
Query: 1088 SEEYVGRILFALQEISYSGPT-YTPEKSLKKII--YDKKARRYADFNTYLDDGLMRVHRV 1258
V I AL+++ Y Y P + L + Y K + + LDDGL+ V RV
Sbjct: 302 RRN-VACIEQALEKLYYLKECCYDPVRWLTEQYDGYLKGRQPPKSPSINLDDGLVYVRRV 360
Query: 1259 QVTPTKVYLFGPEVDVSNRVIRQFSEYIDDFIRVSFIDEDERQLFATDLCQKMPNGEKKY 1438
VTP KVY GPEV+VSNRV+R +SE ID+F+RVSF+DE+ +L++TDL K G
Sbjct: 361 LVTPCKVYFCGPEVNVSNRVLRNYSEDIDNFLRVSFVDEEWEKLYSTDLLPKASTGNGIR 420
Query: 1439 TKLYLRILSXXXXXXXXXXXXFEFLAFSSSQLRESSLWMFASNEQVTAETIRAWMGNFLS 1618
T +Y RILS FEFLAFSSSQLR++S+WMFAS +TA IR WMG+F
Sbjct: 421 TNIYERILSTLRKGFVIGDKKFEFLAFSSSQLRDNSVWMFASRPGLTAIDIRTWMGDFSQ 480
Query: 1619 IRNVAKCAARMGQCFSSSKKTLCVYESEVEDCNDITIERDSDSYVFSDGIGKISVALAEE 1798
I+NVAK AAR+GQ F SS +TL V E+E D+ + SYVFSDGIGKIS A
Sbjct: 481 IKNVAKYAARLGQSFGSSTETLSVLRHEIEVIPDVKVH--GTSYVFSDGIGKISADFARR 538
Query: 1799 LAVHCGCDYVPSAFQIRYGGYKGVVAMDPTSSYKLSLRPSMRKFDSENRNVDVLSWTKFR 1978
+A CG + PSAFQIRYGGYKGVVA+DP SS KLSLR SM K++S+N +DVL W+K++
Sbjct: 539 VASKCGLQHTPSAFQIRYGGYKGVVAVDPYSSMKLSLRKSMSKYESDNNKLDVLGWSKYQ 598
Query: 1979 PCFLNRQIITLLSTLGVRDQRFENLQQEDINRLDLILDHKDMALEVLQIMSGGENHNVII 2158
PC+LNRQ++TLLSTLGV+D E Q+E +++LD IL A E L++MS GEN N++
Sbjct: 599 PCYLNRQLVTLLSTLGVKDDVLEQKQKEAVDQLDAILHDSLKAQEALELMSPGENTNILK 658
Query: 2159 NMLRCGYSPKDEPYLSMVLHAFRAAKLLELKHKARIFVPKGRCLMGCLDEYRILEYGEIF 2338
ML CGY P EP+LSM+L FRA+KLL+L+ K+RIF+P GR +MGCLDE R LEYG++F
Sbjct: 659 AMLNCGYMPDAEPFLSMMLQTFRASKLLDLRTKSRIFIPNGRLMMGCLDESRTLEYGQVF 718
Query: 2339 VQVT-----EPRSSLHFGTTGNQTSIRKRIITGTVIVAKNPCLHPGDVRILRAVDDPRLH 2503
VQ T E LH T+ I+ G V+VAKNPCLHPGD+R+LRAVD P LH
Sbjct: 719 VQFTGSGHREFSEDLHPFNNSRSTNCNF-ILKGNVVVAKNPCLHPGDIRVLRAVDVPALH 777
Query: 2504 HLVDCVVFPQKGKRPHPNECSGSDLDGDLYFVCWDESLIPPDVDMPMDYAAPPQISLNRP 2683
H+VDCVVFPQKGKRPHPNECSGSDLDGD+YFVCWD+ +IPP M+Y P I L+
Sbjct: 778 HMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVCWDQDMIPPRQVQAMEYPPAPSIQLDHD 837
Query: 2684 VTIEDIQEFFANYMLNDSIGIISARHTVFADSDQEMARSDNCLKLAQLFTLAVDFPKTGV 2863
VTIE+++E+F NY++NDS+GII+ H VFAD + +MA SD C KLA+L ++AVDFPKTGV
Sbjct: 838 VTIEEVEEYFTNYIVNDSLGIIANAHVVFADREPDMAMSDPCKKLAELCSIAVDFPKTGV 897
Query: 2864 PAKIPSDLVPREYPDFMEK-EDKPTYISKRVIGKLYRAVKDHATQSLTISSFTKEVAYKA 3040
PA+IP L P+EYPDFM+K DK TYIS+RVIGKLYR VKD A Q+ + + FT++VA ++
Sbjct: 898 PAEIPPQLRPKEYPDFMDKPPDKTTYISERVIGKLYRKVKDKAPQASSTAIFTRDVARRS 957
Query: 3041 YDRDLEVGAYKDYIDAAFVCKNLYDSSLLSIMHRYGIRYEAEIVSGNIFSLSKFHGSKLS 3220
YD DLEV ++DYID AF K YD+ L ++M YGI+ EAEI+SG I SK +
Sbjct: 958 YDADLEVDGFEDYIDEAFDYKTEYDNKLGNLMDYYGIKTEAEILSGGIMKTSKTFDRRKD 1017
Query: 3221 DVRELLLTEVKSLQRETRSWFDA--DVRELEANEYDLASAWYHITYHPYYWG-YGENDDS 3391
E + V++L++E R+WF D+ ++ ASAWYH+TYHP YWG Y +
Sbjct: 1018 --AEAISIAVRALRKEARTWFKRRNDIDDM----LPKASAWYHVTYHPTYWGCYNQG--- 1068
Query: 3392 DYRNPHLISFPWTVYDKLLRIKRNKTR 3472
+ H ISFPW VYD+L++IK+ K R
Sbjct: 1069 -LKRDHFISFPWCVYDQLIQIKKEKAR 1094
>gb|EXB53859.1| RNA-dependent RNA polymerase 1 [Morus notabilis]
Length = 1133
Score = 926 bits (2393), Expect = 0.0
Identities = 526/1124 (46%), Positives = 717/1124 (63%), Gaps = 25/1124 (2%)
Frame = +2
Query: 170 RTVKITHIPLGTDANQLTTLLEGILQEKGCVYSAKILKQTNPRHVYAHAIVQ---LDRSF 340
+T++++ P A + LEG +G VY+ KI + T ++AIVQ ++ +
Sbjct: 3 KTIQLSGFPSHVSAESVKEFLEGHTG-RGTVYAIKI-RPTKNGGSRSYAIVQFMTVETAE 60
Query: 341 LARKLCTTLP--ASTLMQATVLPRDMVSKPRESTVHIATRRLHFGCQVSHNRYAVLWTCD 514
L +L + + A V+ RD+V KPR + + LHFGCQ+S +++ LW
Sbjct: 61 LIIRLANPRLWYGRSYLLARVMERDIVPKPRATLYSLQNVTLHFGCQISKEKFSFLWRV- 119
Query: 515 SDVQFEFASDIKKLFIELTDRGISYRLVLSFGNVRYMHRYSTDSSRRTYLVIQVYCAPKI 694
+V +F +++L LT + YRL L + NV + + YL+IQ+ AP++
Sbjct: 120 GNVSVDFGLGLRRLNFYLTYGPVEYRLQLLYENVWQIELHRPRGQTAKYLLIQLLGAPRV 179
Query: 695 YYKEP--SSDMGDGLWIAEFFKFGSDNQWIRTTDFTRNFSIGNSTSICLELLDGAKDAVI 868
Y KE S D+ + + +FK D+QW+R TDFT + IG+S+++ LEL G +
Sbjct: 180 YEKEVRISFDILENP-LFNYFKDTPDDQWVRATDFTESCCIGHSSALYLELPYGVDLPDL 238
Query: 869 KNSFYNYKDIRENLSLHINXXXXXXXRLVPSXXXXXXXXXXYKILFQVNALVQEGILSWP 1048
+ +F YK+ E L LVP ++ +F++N L+Q G LS P
Sbjct: 239 RENFVYYKESEERFILESGSSFSRNLDLVPIVGPPSGINLPFETVFKINMLLQNGCLSGP 298
Query: 1049 ALGREFFRLLEPKSEEYVGRI------LFALQEISYSGPTYTPEKSLKKIIYDKKARRYA 1210
L +F+RL++P+ V I LF L+E Y + E+ K + + + A
Sbjct: 299 TLDVDFYRLVDPQRIRNVDCINYALEKLFNLKECPYEPAAWLNEQYRKYLTAPRPPKPPA 358
Query: 1211 DFNTYLDDGLMRVHRVQVTPTKVYLFGPEVDVSNRVIRQFSEYIDDFIRVSFIDEDERQL 1390
LD GL+ V RVQVTP+KVY GPE++VSNRV+R++ +YID F+RVSF+DE+ +L
Sbjct: 359 ---IALDSGLVYVRRVQVTPSKVYFCGPEINVSNRVLREYIDYIDYFLRVSFVDEELEKL 415
Query: 1391 FATDLCQKMPNG-EKKYTKLYLRILSXXXXXXXXXXXXFEFLAFSSSQLRESSLWMFASN 1567
F+TDL + N E + T +Y RILS FEFLAFSSSQLR++SLWMFA+
Sbjct: 416 FSTDLSPRTSNANEDRRTGIYRRILSVLRNGIEIGDRKFEFLAFSSSQLRDNSLWMFAAV 475
Query: 1568 EQVTAETIRAWMGNFLSIRNVAKCAARMGQCFSSSKKTLCVYESEVEDCNDITIERDSDS 1747
+ +A+TIR W+G+F SIRNVAK AAR+GQ F SS +TL V ESE E +DI IER +
Sbjct: 476 DGHSADTIRQWIGDFRSIRNVAKYAARLGQSFGSSTETLTVDESETEVISDIEIERGAVK 535
Query: 1748 YVFSDGIGKISVALAEELAVHCGC-DYVPSAFQIRYGGYKGVVAMDPTSSYKLSLRPSMR 1924
YVFSDGIGKIS A+ +A CG D VPSAFQIRY GYKGVVA+DPTSS KLSLR SM
Sbjct: 536 YVFSDGIGKISSTFAKRVAKKCGLKDCVPSAFQIRYCGYKGVVAVDPTSSTKLSLRKSMW 595
Query: 1925 KFDSENRNVDVLSWTKFRPCFLNRQIITLLSTLGVRDQRFENLQQEDINRLDLILDHKDM 2104
K++SE +DVL+++K + C+LNRQ+ITLLSTLGV D+ FE Q+E + +L+ IL+
Sbjct: 596 KYESELHKLDVLAYSKLQHCYLNRQLITLLSTLGVGDRVFEKKQREAVQQLNAILNDPLR 655
Query: 2105 ALEVLQIMSGGENHNVIINMLRCGYSPKDEPYLSMVLHAFRAAKLLELKHKARIFVPKGR 2284
A E L +MS GE N++ +L CGY P EP+LSM+L AFRA+KL EL+ K RI +P GR
Sbjct: 656 AREALDLMSAGETTNILKELLSCGYQPNAEPFLSMMLQAFRASKLQELRTKTRISIPDGR 715
Query: 2285 CLMGCLDEYRILEYGEIFVQVT----EP--RSSLHFGTTGNQTSIRKRIITGTVIVAKNP 2446
+MGCLDE R LEYGE+FVQ + P S G TG S + I+ G V+VAKNP
Sbjct: 716 AMMGCLDEMRTLEYGEVFVQFSGITHRPFFEDSFMLGGTG---SGQNYIVVGRVVVAKNP 772
Query: 2447 CLHPGDVRILRAVDDPRLHHLVDCVVFPQKGKRPHPNECSGSDLDGDLYFVCWDESLIPP 2626
CLHPGDVR+LRAV+ P LHH+VDCVVFPQKG RPHPNECSGSDLDGD+YFVCWD+ LIP
Sbjct: 773 CLHPGDVRVLRAVNVPALHHMVDCVVFPQKGSRPHPNECSGSDLDGDIYFVCWDDELIPQ 832
Query: 2627 DVDMPMDYAAPPQISLNRPVTIEDIQEFFANYMLNDSIGIISARHTVFADSDQEMARSDN 2806
PMDY+ P L+ V IE++QE+F NY++NDS+GII+ HT FAD + A S +
Sbjct: 833 KQFEPMDYSPAPTTRLDHDVRIEEVQEYFTNYIVNDSLGIIANAHTAFADKEPSKAMSPS 892
Query: 2807 CLKLAQLFTLAVDFPKTGVPAKIPSDLVPREYPDFMEKEDKPTYISKRVIGKLYRAVKDH 2986
C++LA+LF++AVDFPKTGVPA IP +L +EYPDFMEK +KPTY S+ VIGKL+R VKD
Sbjct: 893 CIELARLFSIAVDFPKTGVPAVIPQELYVKEYPDFMEKLNKPTYESQNVIGKLFREVKDI 952
Query: 2987 ATQSLTISSFTKEVAYKAYDRDLEVGAYKDYIDAAFVCKNLYDSSLLSIMHRYGIRYEAE 3166
A ++ FTKEVA ++YD D+E ++DYID AF K+ YD L +++ YGI+ EAE
Sbjct: 953 APNVGSLHFFTKEVASRSYDPDMEYDGFEDYIDDAFYYKSNYDYKLGNLLDYYGIKSEAE 1012
Query: 3167 IVSGNIFSLSKFHGSKLSDVRELLLTEVKSLQRETRSWFDADVRELEA---NEYDLASAW 3337
I+ G+I +SK +K D + + V++L++E R+WF+ L++ + Y ASAW
Sbjct: 1013 IIGGSIMRMSKSF-TKRRDAESINMA-VRALRKEARTWFNEKGSSLDSAADDVYAKASAW 1070
Query: 3338 YHITYHPYYWG-YGENDDSDYRNPHLISFPWTVYDKLLRIKRNK 3466
Y++TYH YWG Y E + D H +SFPW VYDKL++IKR+K
Sbjct: 1071 YYVTYHHSYWGCYNEGMNRD----HYLSFPWCVYDKLVQIKRSK 1110
>ref|XP_004297425.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Fragaria vesca subsp.
vesca]
Length = 1119
Score = 926 bits (2392), Expect = 0.0
Identities = 528/1116 (47%), Positives = 700/1116 (62%), Gaps = 17/1116 (1%)
Frame = +2
Query: 170 RTVKITHIPLGTDANQLTTLLEGILQEKGCVYSAKILKQTNPRHVYAHAIVQLDRSFLAR 349
+T+++ P G A + LE E G V++ K+ + YA I+Q A
Sbjct: 3 KTIQLHGFPSGQTAENIKEFLEKHTGE-GSVFALKLRPAKSGGRFYA--IIQFQSISQAE 59
Query: 350 KLCTTLPASTLMQATVL----PRDMVSKPRESTVHIATRRLHFGCQVSHNRYAVLWTCDS 517
K+ + A + L D+V KPR + LH GCQV+ ++++VLW +
Sbjct: 60 KIISLANARLWYGRSYLNARPAHDIVPKPRTFLHSLRDLVLHVGCQVAKDKFSVLWGT-A 118
Query: 518 DVQFEFASDIKKLFIELTDRGISYRLVLSFGNVRYMHRYSTDSSRRTYLVIQVYCAPKIY 697
+V +F ++ L L R YRL LS+ N+ + + YLVIQ+Y P+IY
Sbjct: 119 EVSVDFGFGMRNLQFRLLYRQKVYRLQLSYENIWQIELHHQRGRSAKYLVIQLYGNPRIY 178
Query: 698 YKEPSSDMGDGLWIAEFFKFGSDNQWIRTTDFTRNFSIGNSTSICLELLDGAKDAVIKNS 877
+E S G+G +F+ D W+RTTDFT IG S+S+CL L + + +
Sbjct: 179 QQEVCSSGGNGYEDMNYFRDPDD--WVRTTDFTPGSCIGQSSSLCLVLTSDGELPDFEEN 236
Query: 878 FYNYKDIRENLSLHINXXXXXXXRLVPSXXXXXXXXXXYKILFQVNALVQEGILSWPALG 1057
F YK L LVP Y ILF++N LVQ+G LS P L
Sbjct: 237 FAYYKKTDGQFILENGSTFSRNRDLVPIVGSPAGIDLPYDILFKINLLVQQGCLSGPTLD 296
Query: 1058 REFFRLLEPKSEEYVGR--ILFALQEIS-YSGPTYTP----EKSLKKIIYDKKARRYADF 1216
F+RL++P+ + R I FAL ++S Y P + +K + KK + A
Sbjct: 297 NNFYRLVDPRR---ISRPCIEFALDKLSNLKESCYEPAVWLNEEYRKYMMSKKPPKPALI 353
Query: 1217 NTYLDDGLMRVHRVQVTPTKVYLFGPEVDVSNRVIRQFSEYIDDFIRVSFIDEDERQLFA 1396
+ LD GL+ V RVQ+TP+KVY GPEV+VSNR++RQ+S ID+F+RVSF+DE+ +L++
Sbjct: 354 S--LDSGLVYVRRVQITPSKVYFSGPEVNVSNRILRQYSSDIDNFLRVSFVDEEMEKLYS 411
Query: 1397 TDLCQKMPNGEKKYTKLYLRILSXXXXXXXXXXXXFEFLAFSSSQLRESSLWMFASNEQV 1576
TDL P + T++Y R+LS FEFLAFSSSQLRE+SLWMFA ++
Sbjct: 412 TDLS---PRTSTRKTRIYNRVLSVLRDGIVVGKKKFEFLAFSSSQLRENSLWMFAPTDED 468
Query: 1577 TAETIRAWMGNFLSIRNVAKCAARMGQCFSSSKKTLCVYESEVEDCNDITIERDSDSYVF 1756
+A+TIRA MG+F IRNVAK AAR+GQ F SS +TL V +E+E D+T+ YVF
Sbjct: 469 SADTIRAGMGDFRQIRNVAKYAARLGQSFGSSTETLSVGRNEMEVIPDVTVNSCGIKYVF 528
Query: 1757 SDGIGKISVALAEELAVHCGCD-YVPSAFQIRYGGYKGVVAMDPTSSYKLSLRPSMRKFD 1933
SDGIGKIS AE +A CG + PSAFQIRYGGYKGVVA+DPTSS KLSLR SM K++
Sbjct: 529 SDGIGKISADFAERVAKKCGYKAFTPSAFQIRYGGYKGVVAVDPTSSMKLSLRKSMSKYE 588
Query: 1934 SENRNVDVLSWTKFRPCFLNRQIITLLSTLGVRDQRFENLQQEDINRLDLILDHKDMALE 2113
SEN +DVL+ +K++PCFLNRQ+ITLLSTL V+D F Q+ + +L+ IL A E
Sbjct: 589 SENTKLDVLACSKYQPCFLNRQLITLLSTLEVQDHVFLKKQRAAVQQLNAILTDPLKAEE 648
Query: 2114 VLQIMSGGENHNVIINMLRCGYSPKDEPYLSMVLHAFRAAKLLELKHKARIFVPKGRCLM 2293
L +MS GE+ NV+ +L CGY P EP+LSM+L FRA+KLLEL+ K RIF+P GR +M
Sbjct: 649 ALDLMSAGESTNVLKELLMCGYKPNVEPFLSMMLQTFRASKLLELRTKTRIFIPDGRAMM 708
Query: 2294 GCLDEYRILEYGEIFVQVTEPRSSLHFGTTGNQTSIRKR-IITGTVIVAKNPCLHPGDVR 2470
GCLDE R LEYG++FVQ + R F +S+ II G V+VAKNPCLHPGDVR
Sbjct: 709 GCLDETRTLEYGQVFVQFSGKRRRQLFDDICIHSSLDSCFIIEGKVVVAKNPCLHPGDVR 768
Query: 2471 ILRAVDDPRLHHLVDCVVFPQKGKRPHPNECSGSDLDGDLYFVCWDESLIPPDVDMPMDY 2650
+LRAV+ P LHH+VDCVVFPQKG RPHPNECSGSDLDGD+YFVCWD LIPP PMDY
Sbjct: 769 VLRAVNVPDLHHMVDCVVFPQKGHRPHPNECSGSDLDGDIYFVCWDPELIPPKQIQPMDY 828
Query: 2651 AAPPQISLNRPVTIEDIQEFFANYMLNDSIGIISARHTVFADSDQEMARSDNCLKLAQLF 2830
P I +++ VTIE+++E+F NY++NDS+GII+ HTVFADS + A S CL+LA+LF
Sbjct: 829 TPAPPIEMDQDVTIEEVEEYFVNYIVNDSLGIIANAHTVFADSKLDKAMSHPCLQLAKLF 888
Query: 2831 TLAVDFPKTGVPAKIPSDLVPREYPDFMEKEDKPTYISKRVIGKLYRAVKDHATQSLTIS 3010
++AVDFPKTGVPA+IP +L +EYPDFMEK DK TYIS VIG+L+R VKD A +I+
Sbjct: 889 SIAVDFPKTGVPAEIPPELYAKEYPDFMEKPDKRTYISHNVIGQLFREVKDIAPHDSSIA 948
Query: 3011 SFTKEVAYKAYDRDLEVGAYKDYIDAAFVCKNLYDSSLLSIMHRYGIRYEAEIVSGNIFS 3190
SFT++VA K YD D+EV ++DY++ AF K YD L +++ YGI+ EAEI+SG+I +
Sbjct: 949 SFTRQVATKCYDPDMEVDGFEDYLEDAFYHKGNYDYKLGNMLDYYGIKTEAEILSGSIMT 1008
Query: 3191 LSKFHGSKLSDVRELLLTEVKSLQRETRSWF---DADVRELEANEYDLASAWYHITYHPY 3361
LSK +K D + + VKSL++E R+WF D + + + Y ASAWYH+TYHP
Sbjct: 1009 LSKSF-TKRRDA-DAINVAVKSLRKEARAWFNEKDTGIDSGDDDVYAKASAWYHVTYHPN 1066
Query: 3362 YWG-YGENDDSDYRNPHLISFPWTVYDKLLRIKRNK 3466
Y+G Y E H ISFPW V+DKL IK+ K
Sbjct: 1067 YFGLYNEG----MNRAHFISFPWCVFDKLGHIKKEK 1098
>gb|AAN64409.1| RNA-dependent RNA polymerase 1 [Arabidopsis thaliana]
Length = 1107
Score = 924 bits (2389), Expect = 0.0
Identities = 533/1113 (47%), Positives = 701/1113 (62%), Gaps = 16/1113 (1%)
Frame = +2
Query: 170 RTVKITHIPLGTDANQLTTLLEGILQEKGCVYSAKIL--KQTNPRHVYAHAIVQLDRSFL 343
+T+++ P G A ++ LE L G VY+ K+ K+ PR +AIVQ
Sbjct: 3 KTIQVFGFPNGVSAEEVKKFLER-LTGSGTVYAIKVRQPKKGGPR---VYAIVQFTSERH 58
Query: 344 ARKLCTTLP-----ASTLMQATVLPRDMVSKPRESTVHIATRRLHFGCQVSHNRYAVLWT 508
R + T + ++A + +D+V KPR S I+ ++ FGCQVS ++ LW+
Sbjct: 59 TRLIITAAAERLYYGRSYLKAFEVEQDIVPKPRASLHTISGLKMFFGCQVSTKKFLTLWS 118
Query: 509 CDSDVQFEFASDIKKLFIELTDRGISYRLVLSFGNVRYMHRYSTDSSRRTYLVIQVYCAP 688
DV F ++KL + YRL LS+ N+ + +S +LVIQV AP
Sbjct: 119 AQ-DVCVSFGIGMRKLHFSFSWYQKDYRLELSYENIWQIDLHSPQGRSSKFLVIQVIGAP 177
Query: 689 KIYYKEPSSDMGDGLWIAEFFKFGSDNQWIRTTDFTRNFSIGNSTSICLELLDGAKDAVI 868
KI+ KE + I +F+ GSD QWIRTTDFT + IG ST+ CLEL
Sbjct: 178 KIFEKE-DQPINLLFGIMDFYSDGSDEQWIRTTDFTSSSCIGQSTAFCLELPVHLNVPDF 236
Query: 869 KNSFYNYKDIRENLSL--HINXXXXXXXRLVPSXXXXXXXXXXYKILFQVNALVQEGILS 1042
+ +F NY + R + L + LVP ++ILF++N LVQ LS
Sbjct: 237 RENFANYAEHRASSFLIESGSSYSSNANTLVPVVDPPPGFSLPFEILFKLNTLVQNACLS 296
Query: 1043 WPALGREFFRLLEPKSEE-----YVGRILFALQEISYSGPTYTPEKSLKKIIYDKKARRY 1207
PAL +F+RLL K + + LF L E Y P + KK I K +
Sbjct: 297 GPALDLDFYRLLNQKKYDRALIDHCLEKLFHLGECCYE-PAHWLRDEYKKWI--SKGKLP 353
Query: 1208 ADFNTYLDDGLMRVHRVQVTPTKVYLFGPEVDVSNRVIRQFSEYIDDFIRVSFIDEDERQ 1387
LDDGL+ ++RVQVTP +VY GPEV+VSNRV+R +S+YI++F+RVSF+DED +
Sbjct: 354 LSPTISLDDGLVYMYRVQVTPARVYFSGPEVNVSNRVLRHYSKYINNFLRVSFVDEDLEK 413
Query: 1388 LFATDLCQKMPNGEKKYTKLYLRILSXXXXXXXXXXXXFEFLAFSSSQLRESSLWMFASN 1567
+ + DL + + ++ TKLY RI S FEFLAFSSSQLRE+S WMFA
Sbjct: 414 VRSMDLSPR--SSTQRRTKLYDRIYSVLRDGIVIGDKKFEFLAFSSSQLRENSAWMFAPI 471
Query: 1568 EQVTAETIRAWMGNFLSIRNVAKCAARMGQCFSSSKKTLCVYESEVEDCNDITIERDSDS 1747
+++TA IRAWMG+F IRNVAK AAR+GQ FSSS++TL V E+E D+ I
Sbjct: 472 DRITAAHIRAWMGDFDHIRNVAKYAARLGQSFSSSRETLNVRSDEIEVIPDVEIISLGTR 531
Query: 1748 YVFSDGIGKISVALAEELAVHCGC-DYVPSAFQIRYGGYKGVVAMDPTSSYKLSLRPSMR 1924
YVFSDGIGKIS A ++A CG ++ PSAFQIRYGGYKGVVA+DP SS KLSLR SM
Sbjct: 532 YVFSDGIGKISAEFARKVARKCGLTEFSPSAFQIRYGGYKGVVAVDPNSSKKLSLRKSMS 591
Query: 1925 KFDSENRNVDVLSWTKFRPCFLNRQIITLLSTLGVRDQRFENLQQEDINRLDLILDHKDM 2104
KF+SEN +DVL+W+K++PC++NRQ+ITLLSTLGV D FE Q+E ++RLD IL H
Sbjct: 592 KFESENTKLDVLAWSKYQPCYMNRQLITLLSTLGVTDSVFEKKQREVVDRLDAILTHPLE 651
Query: 2105 ALEVLQIMSGGENHNVIINMLRCGYSPKDEPYLSMVLHAFRAAKLLELKHKARIFVPKGR 2284
A E L +M+ GEN N++ ++ CGY P EP+LSM+L FRA+KLLEL+ K RIF+ GR
Sbjct: 652 AHEALGLMAPGENTNILKALILCGYKPDAEPFLSMMLQNFRASKLLELRTKTRIFISGGR 711
Query: 2285 CLMGCLDEYRILEYGEIFVQVTEPRSSLHFGTTGNQTSIRKRIITGTVIVAKNPCLHPGD 2464
+MGCLDE R LEYG++ VQ ++P R+ IITG V+VAKNPCLH GD
Sbjct: 712 SMMGCLDETRTLEYGQVVVQYSDP-----------MRPGRRFIITGPVVVAKNPCLHSGD 760
Query: 2465 VRILRAVDDPRLHHLVDCVVFPQKGKRPHPNECSGSDLDGDLYFVCWDESLIPPDVDMPM 2644
VR+L+AV+ P L+H+VDCVVFPQKG RPHPNECSGSDLDGD+YFVCWD+ L+PP PM
Sbjct: 761 VRVLQAVNVPALNHMVDCVVFPQKGLRPHPNECSGSDLDGDIYFVCWDQELVPPRTSEPM 820
Query: 2645 DYAAPPQISLNRPVTIEDIQEFFANYMLNDSIGIISARHTVFADSDQEMARSDNCLKLAQ 2824
DY P L+ VTIE+++E+FANY++NDS+GII+ HT FAD + A SD C++LA+
Sbjct: 821 DYTPEPTQILDHDVTIEEVEEYFANYIVNDSLGIIANAHTAFADKEPLKAFSDPCIELAK 880
Query: 2825 LFTLAVDFPKTGVPAKIPSDLVPREYPDFMEKEDKPTYISKRVIGKLYRAVKDHATQSLT 3004
F+ AVDFPKTGV A IP L +EYPDFMEK DKPTY SK VIGKL+R VK+ A ++
Sbjct: 881 KFSTAVDFPKTGVAAVIPQHLYVKEYPDFMEKPDKPTYESKNVIGKLFREVKERAPPLIS 940
Query: 3005 ISSFTKEVAYKAYDRDLEVGAYKDYIDAAFVCKNLYDSSLLSIMHRYGIRYEAEIVSGNI 3184
I SFT +VA K+YD+D+EV +++Y+D AF K YD L ++M YGI+ EAEI+SG I
Sbjct: 941 IKSFTLDVASKSYDKDMEVDGFEEYVDEAFYQKANYDFKLGNLMDYYGIKTEAEILSGGI 1000
Query: 3185 FSLSKFHGSKLSDVRELLLTEVKSLQRETRSWFDADVRELEANEYDLASAWYHITYHPYY 3364
+SK +K D E + V++L++ET S F+A E E NE ASAWYH+TYH Y
Sbjct: 1001 MRMSKSF-TKRRDA-ESIGRAVRALRKETLSLFNAS--EEEENESAKASAWYHVTYHSSY 1056
Query: 3365 WG-YGENDDSDYRNPHLISFPWTVYDKLLRIKR 3460
WG Y E + D H +SF W VYDKL+RIK+
Sbjct: 1057 WGLYNEGLNRD----HFLSFAWCVYDKLVRIKK 1085
>ref|XP_002311536.1| RNA-directed RNA Polymerase family protein [Populus trichocarpa]
gi|222851356|gb|EEE88903.1| RNA-directed RNA Polymerase
family protein [Populus trichocarpa]
Length = 1133
Score = 922 bits (2383), Expect = 0.0
Identities = 514/1122 (45%), Positives = 703/1122 (62%), Gaps = 21/1122 (1%)
Frame = +2
Query: 167 SRTVKITHIPLGTDANQLTTLLEGILQEKGCVYSAKILKQTNPRHVYAHAIVQLDRSFLA 346
S+TVK++ P T A + LE G A +++ +AIVQ + A
Sbjct: 2 SKTVKVSGFPSSTTAGAVQVFLES--HTGGGTVEALKIREIRTGGARKYAIVQFTTTRAA 59
Query: 347 RKLCTTLP-----ASTLMQATVLPRDMVSKPRESTVHIATRRLHFGCQVSHNRYAVLWTC 511
++ + + + A + RD++ +PR + + LHFG Q S +++ +W+
Sbjct: 60 EQIISLANPRLWYGHSYLNARPMDRDIIPQPRSFLHTMESVTLHFGYQTSKEKFSAVWS- 118
Query: 512 DSDVQFEFASDIKKLFIELTDRGISYRLVLSFGNVRYMHRYSTDSSRRTYLVIQVYCAPK 691
++V F ++KL L+ Y+L L F N+ + + YL+IQ+Y AP+
Sbjct: 119 GNNVSVNFGLGMRKLHFFLSHNLAEYKLNLLFENIWQIELHRPRGQTVKYLLIQLYGAPR 178
Query: 692 IYYKE-PSSDMGDGLWIAEFFKFGSDNQWIRTTDFTRNFSIGNSTSICLELLDGAKDAVI 868
IY ++ PSS + +F+ D QW+RTTDFT + IG+S+S+CLEL + +
Sbjct: 179 IYERDVPSSSNVFEDPLLNYFRDVPDEQWVRTTDFTPSCGIGHSSSLCLELPNHLQLPNF 238
Query: 869 KNSFYNYKDIRENLSLHINXXXXXXXRLVPSXXXXXXXXXXYKILFQVNALVQEGILSWP 1048
+F+ YK+ L LVP Y ILF+VN LVQ G L+
Sbjct: 239 NENFFYYKENEGTFVLESGLTFSRNPDLVPIVGPSSGVNLPYNILFRVNLLVQNGCLAGS 298
Query: 1049 ALGREFFRLLEP-----KSEEYVGRILFALQEISYSGPTYTPEKSLKKIIYDKKARRYAD 1213
L F+RL++P + EY L+ L+E Y + E+ K + R
Sbjct: 299 MLDDIFYRLVDPNRMPVRCIEYALEKLYHLKECCYEPSKWFNEQYKKYLTSGNPPRSPV- 357
Query: 1214 FNTYLDDGLMRVHRVQVTPTKVYLFGPEVDVSNRVIRQFSEYIDDFIRVSFIDEDERQLF 1393
LD GL+ V++VQ+TP KV+ GPEV+VSNRV+RQ+ E ID+F+RVSF+DE+ ++
Sbjct: 358 --LSLDAGLVYVYKVQITPCKVFFCGPEVNVSNRVLRQYREDIDNFLRVSFVDEELEKIH 415
Query: 1394 ATDLCQKMPN-GEKKYTKLYLRILSXXXXXXXXXXXXFEFLAFSSSQLRESSLWMFASNE 1570
+TD+ + + E + T +Y RILS FEFLAFSSSQLRE+S WMFAS
Sbjct: 416 STDVSPRTSSRNELRRTAIYNRILSTLQNGIVIGDKKFEFLAFSSSQLRENSCWMFASRL 475
Query: 1571 QVTAETIRAWMGNFLSIRNVAKCAARMGQCFSSSKKTLCVYESEVEDCNDITIERDSDSY 1750
+TA IRAWMG+F IRNVA+ AAR+GQ F SS +TL V E+E DI + R Y
Sbjct: 476 GLTAADIRAWMGSFHKIRNVARYAARLGQSFGSSTETLSVSSHEIEIIPDIEVSRGGTRY 535
Query: 1751 VFSDGIGKISVALAEELAVHCGCD-YVPSAFQIRYGGYKGVVAMDPTSSYKLSLRPSMRK 1927
+FSDGIGKIS A ++A+ CGC + PSAFQIRY GYKGVVA+DPTSS KLSLR SM K
Sbjct: 536 LFSDGIGKISAEFARKVAIKCGCKGFTPSAFQIRYAGYKGVVAVDPTSSKKLSLRRSMFK 595
Query: 1928 FDSENRNVDVLSWTKFRPCFLNRQIITLLSTLGVRDQRFENLQQEDINRLDLILDHKDMA 2107
++SEN +DVL+ +K++PCFLNRQ+ITLLSTLGV D FE Q+E +++LD +L A
Sbjct: 596 YESENTKLDVLAHSKYQPCFLNRQLITLLSTLGVPDHHFERKQREAVDQLDAMLTDPLRA 655
Query: 2108 LEVLQIMSGGENHNVIINMLRCGYSPKDEPYLSMVLHAFRAAKLLELKHKARIFVPKGRC 2287
E L++MS GEN N++ ML CGY P EP+LSM+L FRA+KLLEL+ K RIF+P GR
Sbjct: 656 QEALELMSPGENTNILKEMLLCGYQPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRS 715
Query: 2288 LMGCLDEYRILEYGEIFVQVTEPRSSLHFGTTGNQTSIRKR----IITGTVIVAKNPCLH 2455
+MGCLDE R LE+G++FV+ + R + ++ + S R R +I G+V+VAKNPCLH
Sbjct: 716 MMGCLDETRTLEHGQVFVKFSGSRFRNLYDSS-DMFSERGRGQCYLIKGSVVVAKNPCLH 774
Query: 2456 PGDVRILRAVDDPRLHHLVDCVVFPQKGKRPHPNECSGSDLDGDLYFVCWDESLIPPDVD 2635
PGD+RIL+AVD P LHH+VDCVVFPQKG RPHPNECSGSDLDGD+YFVCWD LIP
Sbjct: 775 PGDLRILKAVDVPALHHMVDCVVFPQKGPRPHPNECSGSDLDGDIYFVCWDPELIPSQQI 834
Query: 2636 MPMDYAAPPQISLNRPVTIEDIQEFFANYMLNDSIGIISARHTVFADSDQEMARSDNCLK 2815
PMDY P + L+ VTIE+++E+F NY++NDS+G+I+ HT AD + A S+ C++
Sbjct: 835 SPMDYTPEPPLQLDHDVTIEEVEEYFTNYIVNDSLGVIANAHTAHADKESLKAMSEPCVE 894
Query: 2816 LAQLFTLAVDFPKTGVPAKIPSDLVPREYPDFMEKEDKPTYISKRVIGKLYRAVKDHATQ 2995
LA+ F++AVDFPKTGVPA+IPS+L REYPDFMEK DKP+Y S+ VIGKL+R VKD A +
Sbjct: 895 LARKFSIAVDFPKTGVPAEIPSNLRAREYPDFMEKPDKPSYESRNVIGKLFREVKDIAPR 954
Query: 2996 SLTISSFTKEVAYKAYDRDLEVGAYKDYIDAAFVCKNLYDSSLLSIMHRYGIRYEAEIVS 3175
+ +I SFT +VA + YD D+EV ++DYID AF K+ YD L ++M YGI+ EAE++S
Sbjct: 955 TSSIRSFTSDVARQCYDPDMEVDGFEDYIDDAFYYKSNYDYKLGNLMEYYGIKTEAELLS 1014
Query: 3176 GNIFSLSKFHGSKLSDVRELLLTEVKSLQRETRSWFDADVRELEANEYDL---ASAWYHI 3346
G+ +SK K E + V+SL++E RSWF+ L++ D+ ASAWYH+
Sbjct: 1015 GSFMKMSKSFTKKRD--AEAIGMAVRSLKKEARSWFNEKGSGLDSQADDVDAKASAWYHV 1072
Query: 3347 TYHPYYWG-YGENDDSDYRNPHLISFPWTVYDKLLRIKRNKT 3469
TYH YWG Y E + D H +SFPW VYDKL++IKR +
Sbjct: 1073 TYHHNYWGCYNEGMNRD----HFLSFPWCVYDKLIQIKRRNS 1110
>emb|CAA09697.1| RNA-directed RNA polymerase [Nicotiana tabacum]
Length = 1116
Score = 920 bits (2377), Expect = 0.0
Identities = 513/1130 (45%), Positives = 698/1130 (61%), Gaps = 29/1130 (2%)
Frame = +2
Query: 170 RTVKITHIPLGTDANQLTTLLEGILQEKGCVYSAKILKQTNPRHVYAHAIVQLDRSF--- 340
+T+++ P A + LE G VY+ ++ + R +A ++S
Sbjct: 3 KTIQVFGFPYLLSAEAVKKFLENHTGN-GTVYALEVKQSKGGRRAFAKVQFANNKSAEFI 61
Query: 341 --LARKLCTTLPASTLMQATVLPRDMVSKPRESTVHIATRRLHFGCQVSHNRYAVLWTCD 514
LA K P+ ++A + D+V +PR H+ L+FGCQ+S ++AVL +
Sbjct: 62 IDLASKGLYYGPS--YLKAWEMKTDIV-QPRTYVEHMDGVTLNFGCQISDKKFAVLGS-- 116
Query: 515 SDVQFEFASDIKKLFIELTDRGISYRLVLSFGNVRYMHRYSTDSSRRTYLVIQVYCAPKI 694
DV +F +KK++ L+ Y+L LS+ N+ + + +L++Q++ AP+I
Sbjct: 117 KDVSIKFGIGLKKIYFFLSHASADYKLQLSYENIWQVVLHRPYGQNAQFLLLQLFGAPRI 176
Query: 695 YYKEPSSDMGDGLWIAEFFKFGSDNQWIRTTDFTRNFSIGNSTSICLELLDGAKDAVIKN 874
Y + S FFK D+QW+RTTDFT ++ IG S+S+CLE +G +
Sbjct: 177 YKRLEDS-------CYSFFKETPDDQWVRTTDFTPSW-IGLSSSLCLEFRNGVQLPNFSE 228
Query: 875 SFYNYKDIRENLSLHINXXXXXXXRL--VPSXXXXXXXXXXYKILFQVNALVQEGILSWP 1048
SF+ YK+ L +L VP YKILF++++L+Q G
Sbjct: 229 SFFYYKESMNQFILQTGFTFSFSQKLALVPIVHLPEGIELPYKILFKISSLIQHGCFPGL 288
Query: 1049 ALGREFFRLLEPKSEEYVGRILFALQEISYSGPTYTPEKSLKKIIYDKKARRYADFNTYL 1228
AL FF+L++P+ + I AL+++ Y LK+ YD ++ YL
Sbjct: 289 ALNFNFFQLVDPRRRN-IACIEHALEKLYY----------LKECCYDPVRWLTEQYDEYL 337
Query: 1229 -------------DDGLMRVHRVQVTPTKVYLFGPEVDVSNRVIRQFSEYIDDFIRVSFI 1369
DDGL+ V RV VTP KVY GPEV+VSNRV+R +SE I++F+RVSF+
Sbjct: 338 KGRQLPKSPPITLDDGLVYVRRVVVTPCKVYFCGPEVNVSNRVLRNYSEDINNFLRVSFV 397
Query: 1370 DEDERQLFATDLCQKMPNGEKKYTKLYLRILSXXXXXXXXXXXXFEFLAFSSSQLRESSL 1549
DE+ ++ +TDL + G T +Y RILS FEFLAFSSSQLR++S+
Sbjct: 398 DEEWEKIHSTDLLPRASTGNGTRTDIYERILSTLRNGFIIGDKRFEFLAFSSSQLRDNSV 457
Query: 1550 WMFASNEQVTAETIRAWMGNFLSIRNVAKCAARMGQCFSSSKKTLCVYESEVEDCNDITI 1729
WMFAS +TA IR WMG+F IRNVAK AAR+GQ F SS++TL V EVE D+
Sbjct: 458 WMFASRPGLTANDIRTWMGDFRQIRNVAKYAARLGQSFGSSRETLSVGRHEVEVIPDVAC 517
Query: 1730 ERDSDSYVFSDGIGKISVALAEELAVHCGCDYVPSAFQIRYGGYKGVVAMDPTSSYKLSL 1909
+Y+FSDGIGKIS A + + CG Y PS+FQIRYGGYKGVVA+DP SS KLSL
Sbjct: 518 SLHGTNYIFSDGIGKISADFAHRVTIKCGLQYTPSSFQIRYGGYKGVVAVDPYSSMKLSL 577
Query: 1910 RPSMRKFDSENRNVDVLSWTKFRPCFLNRQIITLLSTLGVRDQRFENLQQEDINRLDLIL 2089
R SM K++S N +DVL W+K++PC+LNRQ++TLLSTLGV D E Q E +++LD IL
Sbjct: 578 RKSMLKYESNNIKLDVLGWSKYQPCYLNRQLVTLLSTLGVIDDVLEQKQNEAVDQLDAIL 637
Query: 2090 DHKDMALEVLQIMSGGENHNVIINMLRCGYSPKDEPYLSMVLHAFRAAKLLELKHKARIF 2269
A E L++MS GEN N++ ML CGY P EP+LSM+L FRA+KLL+L+ + RIF
Sbjct: 638 HDSLKAQEALELMSPGENTNILKEMLNCGYMPDAEPFLSMMLQTFRASKLLDLRTRTRIF 697
Query: 2270 VPKGRCLMGCLDEYRILEYGEIFVQVTEP------RSSLHFGTTGNQTSIRKRIITGTVI 2431
+P GR +MGCLDE R LEYG++FVQ + S F +G+ I+ G V+
Sbjct: 698 IPNGRTMMGCLDESRTLEYGQVFVQFSGAGRRQFFEESHPFNDSGSANC--DFILKGNVV 755
Query: 2432 VAKNPCLHPGDVRILRAVDDPRLHHLVDCVVFPQKGKRPHPNECSGSDLDGDLYFVCWDE 2611
VAKNPCLHPGD+R+LRAVD P LHH+VDCVVFPQKGKRPHPNECSGSDLDGD+YFVCWD
Sbjct: 756 VAKNPCLHPGDIRVLRAVDVPALHHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVCWDP 815
Query: 2612 SLIPPDVDMPMDYAAPPQISLNRPVTIEDIQEFFANYMLNDSIGIISARHTVFADSDQEM 2791
LIPP MDY P L+ VTIE+++E+F NY++NDS+GII+ H VFAD + +M
Sbjct: 816 DLIPPRQVQSMDYTPAPTTQLDHDVTIEEVEEYFTNYIINDSLGIIANAHVVFADREPDM 875
Query: 2792 ARSDNCLKLAQLFTLAVDFPKTGVPAKIPSDLVPREYPDFMEKEDKPTYISKRVIGKLYR 2971
A SD C +LAQLF++AVDFPKTGVPA+IPS L P+EYPDFMEK DKPTY S++VIGKL++
Sbjct: 876 AMSDPCKQLAQLFSIAVDFPKTGVPAEIPSQLRPKEYPDFMEKPDKPTYPSEKVIGKLFQ 935
Query: 2972 AVKDHATQSLTISSFTKEVAYKAYDRDLEVGAYKDYIDAAFVCKNLYDSSLLSIMHRYGI 3151
VK+ Q+ +I++FT++VA K+YD D+ V ++DYID AF K+ YD+ L ++M YGI
Sbjct: 936 KVKNKTPQASSIATFTRDVARKSYDSDMIVDGFEDYIDEAFYYKSEYDNKLGNLMDYYGI 995
Query: 3152 RYEAEIVSGNIFSLSKFHGSKLSDVRELLLTEVKSLQRETRSWFD--ADVRELEANEYDL 3325
+ EAEI+SG I SK + E + V+ L++E R+WF +D+ ++ A
Sbjct: 996 KTEAEILSGGIMKASKTFDRRKD--AEAIGVAVRCLRKEARAWFKRRSDIDDMLAK---- 1049
Query: 3326 ASAWYHITYHPYYWG-YGENDDSDYRNPHLISFPWTVYDKLLRIKRNKTR 3472
ASAWYH+TYH YWG Y E + H ISFPW VYD+L++IK+ K R
Sbjct: 1050 ASAWYHVTYHHTYWGLYNEG----LKRDHFISFPWCVYDQLIQIKKAKAR 1095