BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ephedra25_contig00003143
         (1825 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|EOY33970.1| Homeodomain-like superfamily protein, putative is...   209   4e-51
ref|XP_002283159.1| PREDICTED: uncharacterized protein LOC100253...   207   2e-50
emb|CBI16094.3| unnamed protein product [Vitis vinifera]              205   5e-50
ref|XP_004145284.1| PREDICTED: uncharacterized protein LOC101216...   202   3e-49
ref|XP_004507164.1| PREDICTED: two-component response regulator ...   202   5e-49
ref|XP_003537977.1| PREDICTED: transcription factor LUX-like iso...   201   9e-49
gb|ESW04037.1| hypothetical protein PHAVU_011G062100g [Phaseolus...   201   1e-48
ref|XP_006846291.1| hypothetical protein AMTR_s00012p00251530 [A...   197   1e-47
gb|EMJ06781.1| hypothetical protein PRUPE_ppa008837mg [Prunus pe...   197   2e-47
ref|XP_003606714.1| Two-component response regulator ARR1 [Medic...   195   5e-47
ref|XP_006424879.1| hypothetical protein CICLE_v10028658mg [Citr...   193   2e-46
gb|EXC10705.1| Two-component response regulator [Morus notabilis]     192   4e-46
ref|NP_190248.1| transcription factor LUX [Arabidopsis thaliana]...   188   8e-45
ref|XP_006418876.1| hypothetical protein EUTSA_v10002605mg [Eutr...   188   8e-45
ref|NP_001190022.1| transcription factor LUX [Arabidopsis thalia...   188   8e-45
ref|XP_006291467.1| hypothetical protein CARUB_v10017603mg [Caps...   187   1e-44
dbj|BAH20438.1| AT3G46640 [Arabidopsis thaliana]                      187   2e-44
ref|XP_002313898.2| hypothetical protein POPTR_0009s03990g [Popu...   186   3e-44
ref|XP_002875796.1| hypothetical protein ARALYDRAFT_485038 [Arab...   184   8e-44
dbj|BAE16280.1| NbPCL1 [Nicotiana benthamiana]                        182   3e-43

>gb|EOY33970.1| Homeodomain-like superfamily protein, putative isoform 1 [Theobroma
            cacao] gi|508786715|gb|EOY33971.1| Homeodomain-like
            superfamily protein, putative isoform 1 [Theobroma cacao]
          Length = 365

 Score =  209 bits (531), Expect = 4e-51
 Identities = 124/255 (48%), Positives = 157/255 (61%), Gaps = 16/255 (6%)
 Frame = -2

Query: 1692 TSRIKKMEDVDEEMEGVAEWERGLPGPEEMTPLSQILITAELSCAFSISPEPCKTLMDVT 1513
            T+    ++D D++ E V EWE GLP  +++TPLSQ LI  EL+ AFSISPEP +T +DV 
Sbjct: 28   TATAAVVDDDDDDEERVLEWEMGLPNTDDLTPLSQSLIPPELASAFSISPEPRRTTLDVN 87

Query: 1512 RASHNTLSSLRRHNSAPAKTMLNPDGISATEPNND----------EDIG-----GAQTVP 1378
            RASH+TLSSLR   S  + T  N +  +    NN+          E +G     G+ + P
Sbjct: 88   RASHSTLSSLRSTGSHSSTTNNNNNNNNNNNNNNNFRSFNDPMVVEPVGDGSGSGSGSDP 147

Query: 1377 RDNKVESHAKNAANKCXXXXXXXXXXXXXXXXXXXGDENEDQSERALKRQRLVWTPELHK 1198
            +  +    A+ A +                      + +ED S R LKR RLVWTP+LHK
Sbjct: 148  KKMRKMDIAEEADSAVRTT-----------------ENSEDPSARTLKRPRLVWTPQLHK 190

Query: 1197 RFVDVVAHLGIKNAVPKTIMQLMNVEGLTRENVASHLQKYRLYLKR-QGHSDDGAGPADP 1021
            RFVDVVAHLGIKNAVPKTIMQLMNVEGLTRENVASHLQKYRLYLKR QG S++G   +D 
Sbjct: 191  RFVDVVAHLGIKNAVPKTIMQLMNVEGLTRENVASHLQKYRLYLKRMQGLSNEGPSSSDQ 250

Query: 1020 IFSSSPKFNPFHKDG 976
            +F+S+P     H+ G
Sbjct: 251  LFASTPVPQSLHEGG 265


>ref|XP_002283159.1| PREDICTED: uncharacterized protein LOC100253567 [Vitis vinifera]
          Length = 311

 Score =  207 bits (526), Expect = 2e-50
 Identities = 131/306 (42%), Positives = 163/306 (53%), Gaps = 3/306 (0%)
 Frame = -2

Query: 1650 EGVAEWERGLPGPEEMTPLSQILITAELSCAFSISPEPCKTLMDVTRASHNTLSSLRRHN 1471
            E V EWE GLP  +++TPLSQ LI  EL+ AFSI+PEPC+TL++V RAS +T S++R  +
Sbjct: 19   ERVLEWEAGLPAADDLTPLSQPLIPPELASAFSITPEPCRTLLEVNRASQSTFSTIRGQS 78

Query: 1470 SAPAKTMLNPDGISATEPNNDED--IGGAQTVPRDNKVESHAKNAANKCXXXXXXXXXXX 1297
             + +         S  E  N E   +   +T  RD       K     C           
Sbjct: 79   HSFSSNNFK----SFNEERNREPAVVEPEETGDRDGSGSESRKVRKVDCAEEADSAMRTE 134

Query: 1296 XXXXXXXXGDENEDQSERALKRQRLVWTPELHKRFVDVVAHLGIKNAVPKTIMQLMNVEG 1117
                     + N+D S R LKR RLVWTP+LHKRFVDVV HLGIKNAVPKTIMQLMNVEG
Sbjct: 135  ---------NSNDDPSARTLKRPRLVWTPQLHKRFVDVVGHLGIKNAVPKTIMQLMNVEG 185

Query: 1116 LTRENVASHLQKYRLYLKR-QGHSDDGAGPADPIFSSSPKFNPFHKDGPYXXXXXXXXXX 940
            LTRENVASHLQKYRLYLKR QG S++G   +D +F+S+P     H+ G            
Sbjct: 186  LTRENVASHLQKYRLYLKRMQGLSNEGPSSSDHLFASTPVPQSLHESG----GSVHGNGH 241

Query: 939  XXXXXXXXXXXPYGNPMVQMPVMGIAHNSQSAPHGGGLYPSPCGSGSFGMSMPHSGDRGQ 760
                       PYG  M+ MPV+G++H                G G  GMS P      +
Sbjct: 242  GNGHMSVPIPMPYGQTMMHMPVLGVSH----------------GHGQMGMSGPGGYHGYE 285

Query: 759  MHNDLN 742
             H+  N
Sbjct: 286  SHHPYN 291


>emb|CBI16094.3| unnamed protein product [Vitis vinifera]
          Length = 395

 Score =  205 bits (522), Expect = 5e-50
 Identities = 133/342 (38%), Positives = 172/342 (50%), Gaps = 1/342 (0%)
 Frame = -2

Query: 1764 VNEWHRCYRAYWFCQTQQILTSLRTSRIKKMEDVDEEMEGVAEWERGLPGPEEMTPLSQI 1585
            +  W   ++ +    T  +   +R S I   +  D+E   V EWE GLP  +++TPLSQ 
Sbjct: 94   IRGWCMSFQRWVLSSTNSMGEEVRMSDINGGDGGDDER--VLEWEAGLPAADDLTPLSQP 151

Query: 1584 LITAELSCAFSISPEPCKTLMDVTRASHNTLSSLRRHNSAPAKTMLNPDGISATEPNNDE 1405
            LI  EL+ AFSI+PEPC+TL++V RAS +T S++R  + + +         S  E  N E
Sbjct: 152  LIPPELASAFSITPEPCRTLLEVNRASQSTFSTIRGQSHSFSSNNFK----SFNEERNRE 207

Query: 1404 DIGGAQTVPRDNKVESHAKNAANKCXXXXXXXXXXXXXXXXXXXGDENEDQSERALKRQR 1225
                   +  +N                                   N+D S R LKR R
Sbjct: 208  PAEADSAMRTENS----------------------------------NDDPSARTLKRPR 233

Query: 1224 LVWTPELHKRFVDVVAHLGIKNAVPKTIMQLMNVEGLTRENVASHLQKYRLYLKR-QGHS 1048
            LVWTP+LHKRFVDVV HLGIKNAVPKTIMQLMNVEGLTRENVASHLQKYRLYLKR QG S
Sbjct: 234  LVWTPQLHKRFVDVVGHLGIKNAVPKTIMQLMNVEGLTRENVASHLQKYRLYLKRMQGLS 293

Query: 1047 DDGAGPADPIFSSSPKFNPFHKDGPYXXXXXXXXXXXXXXXXXXXXXPYGNPMVQMPVMG 868
            ++G   +D +F+S+P     H+ G                       PYG  M+ MPV+G
Sbjct: 294  NEGPSSSDHLFASTPVPQSLHESG----GSVHGNGHGNGHMSVPIPMPYGQTMMHMPVLG 349

Query: 867  IAHNSQSAPHGGGLYPSPCGSGSFGMSMPHSGDRGQMHNDLN 742
            ++H                G G  GMS P      + H+  N
Sbjct: 350  VSH----------------GHGQMGMSGPGGYHGYESHHPYN 375


>ref|XP_004145284.1| PREDICTED: uncharacterized protein LOC101216423 [Cucumis sativus]
            gi|449470904|ref|XP_004153145.1| PREDICTED:
            uncharacterized protein LOC101205712 [Cucumis sativus]
            gi|449525506|ref|XP_004169758.1| PREDICTED:
            uncharacterized LOC101205712 [Cucumis sativus]
          Length = 336

 Score =  202 bits (515), Expect = 3e-49
 Identities = 127/274 (46%), Positives = 155/274 (56%), Gaps = 1/274 (0%)
 Frame = -2

Query: 1650 EGVAEWERGLPGPEEMTPLSQILITAELSCAFSISPEPCKTLMDVTRASHNTLSSLRRHN 1471
            E V EWE GLP  +++TPLSQ LI  EL+ AFSIS  PC+TLMDV RAS NTLS+LR   
Sbjct: 27   ERVFEWETGLPDADDLTPLSQTLIPPELASAFSISTGPCRTLMDVNRASQNTLSNLRGFQ 86

Query: 1470 SAPAKTMLNPDGISATEPNNDEDIGGAQTVPRDNKVESHAKNAANKCXXXXXXXXXXXXX 1291
            +       + +   +   +  +D   A  V  D   E  A + + K              
Sbjct: 87   AQA----FSSNNFKSFNDDRTQD-HDAMVVEGDEATERDAGSDSRKLRKVDCAEEADSAL 141

Query: 1290 XXXXXXGDENEDQSERALKRQRLVWTPELHKRFVDVVAHLGIKNAVPKTIMQLMNVEGLT 1111
                   +  +D S R LKR RLVWTP+LHKRFVDVVAHLGIKNAVPKTIMQLMNVEGLT
Sbjct: 142  RTD----NSMDDPSARTLKRPRLVWTPQLHKRFVDVVAHLGIKNAVPKTIMQLMNVEGLT 197

Query: 1110 RENVASHLQKYRLYLKR-QGHSDDGAGPADPIFSSSPKFNPFHKDGPYXXXXXXXXXXXX 934
            RENVASHLQKYRLYLKR QG S++G    D IF+S+P     H+                
Sbjct: 198  RENVASHLQKYRLYLKRMQGSSNEGPSSPDRIFASTPVPPTLHES------TNSGQANGN 251

Query: 933  XXXXXXXXXPYGNPMVQMPVMGIAHNSQSAPHGG 832
                     PYG PM+ MPV+G+A +  +  + G
Sbjct: 252  GHLPVPTPMPYGPPMMPMPVLGMAASGHAHSYMG 285


>ref|XP_004507164.1| PREDICTED: two-component response regulator ARR2-like isoform X1
            [Cicer arietinum] gi|502148441|ref|XP_004507165.1|
            PREDICTED: two-component response regulator ARR2-like
            isoform X2 [Cicer arietinum]
          Length = 304

 Score =  202 bits (513), Expect = 5e-49
 Identities = 128/299 (42%), Positives = 164/299 (54%), Gaps = 7/299 (2%)
 Frame = -2

Query: 1671 EDVDEEMEGVAEWERGLPGPEEMTPLSQILITAELSCAFSISPEPCKTLMDVTRASHNTL 1492
            E+V  + E V EWE+GLP  +++TPLS  LI  EL+ AFSISPEP +TL DV RAS NTL
Sbjct: 3    EEVRTDEERVTEWEKGLPSVQDLTPLSMALIPPELASAFSISPEPHRTLFDVNRASRNTL 62

Query: 1491 SSLRRHNSAPAKTMLNPDGISATEPNNDEDIGGAQTVPRDNKVESHAKNAANKCXXXXXX 1312
            S LR       +T+ + +     E + + + G      +  K++S  + A          
Sbjct: 63   SILRASGGNHHQTISSTNDDLDEEEDEEIEEGSGSDSRKHRKIDSATEEA---------- 112

Query: 1311 XXXXXXXXXXXXXGDENEDQSERALKRQRLVWTPELHKRFVDVVAHLGIKNAVPKTIMQL 1132
                           ++  ++E  LKR RLVWTP+LHKRFVDVVAHLGIKNAVPKTIMQL
Sbjct: 113  ---------------DSSVRTETTLKRPRLVWTPQLHKRFVDVVAHLGIKNAVPKTIMQL 157

Query: 1131 MNVEGLTRENVASHLQKYRLYLKR-QGHSDDGAGPADPIFSSSPKFNPFHKDGPYXXXXX 955
            MNVEGLTRENVASHLQKYRLYLKR QG S+D    +D +F+S+P     H          
Sbjct: 158  MNVEGLTRENVASHLQKYRLYLKRMQGLSNDAPSSSDHLFASTPVPQSLHDSA------N 211

Query: 954  XXXXXXXXXXXXXXXXPYGNP--MVQMPVMGIAH----NSQSAPHGGGLYPSPCGSGSF 796
                            PY  P  M+ MP++G+ H    +S S  H G   P P  + S+
Sbjct: 212  ANGNSHSHHSSVPIPMPYPPPPSMMSMPLIGMPHHGHSHSHSHAHMGMPLPPPSAASSY 270


>ref|XP_003537977.1| PREDICTED: transcription factor LUX-like isoform X1 [Glycine max]
          Length = 323

 Score =  201 bits (511), Expect = 9e-49
 Identities = 132/325 (40%), Positives = 170/325 (52%), Gaps = 17/325 (5%)
 Frame = -2

Query: 1677 KMEDVDEEMEGVAEWERGLPGPEEMTPLSQILITAELSCAFSISPEPCKTLMDVTRASHN 1498
            K  + DEE   V EWE GLP   ++TPLSQ LI  EL+ AFSI PEP +TL+DV RAS N
Sbjct: 6    KTSEYDEER--VMEWEAGLPTANDLTPLSQPLIPPELASAFSILPEPHRTLLDVNRASRN 63

Query: 1497 TLSSLRRHNSAPAKTMLNPD-----------GISATEPNNDEDIGGAQTVPRDNKVESHA 1351
            TLS+LR    +  +   + +           G+   E ++D+  G      +  K++  A
Sbjct: 64   TLSTLRGGGGSVHQAFSSSNNNHNYDGDGDGGVEEEEDDDDDRDGSGPDSRKQRKIDCGA 123

Query: 1350 KNAANKCXXXXXXXXXXXXXXXXXXXGDENEDQSER-ALKRQRLVWTPELHKRFVDVVAH 1174
               A+                       + E  +ER A+KR RLVWTP+LHKRFVDVVAH
Sbjct: 124  AEEADSAV--------------------QTETSAERTAVKRPRLVWTPQLHKRFVDVVAH 163

Query: 1173 LGIKNAVPKTIMQLMNVEGLTRENVASHLQKYRLYLKR-QGHSDDGAGPADPIFSSSPKF 997
            LGIKNAVPKTIMQLMNVEGLTRENVASHLQKYRLYLKR QG S++G   +D +F+S+P  
Sbjct: 164  LGIKNAVPKTIMQLMNVEGLTRENVASHLQKYRLYLKRMQGLSNEGPSASDQLFASTPVP 223

Query: 996  NPFHKDGPYXXXXXXXXXXXXXXXXXXXXXPYGNPMVQMPVMGIAHNSQSAPHGGGLYPS 817
               H   P                       +G+  + +P+M + +     P     YP 
Sbjct: 224  QSLHDSAPPSNHSNGHGHGHGHSNGRGHGHGHGHGHLSVPMMSMPY---PPPLMSMPYPP 280

Query: 816  PCGS----GSFGMSMPHSGDRGQMH 754
            P  S    G  G+ MP+S      H
Sbjct: 281  PMMSGMPHGHMGIPMPNSSATSAYH 305


>gb|ESW04037.1| hypothetical protein PHAVU_011G062100g [Phaseolus vulgaris]
          Length = 300

 Score =  201 bits (510), Expect = 1e-48
 Identities = 137/316 (43%), Positives = 166/316 (52%), Gaps = 8/316 (2%)
 Frame = -2

Query: 1677 KMEDVDEEMEGVAEWERGLPGPEEMTPLSQILITAELSCAFSISPEPCKTLMDVTRASHN 1498
            K  + DEE   V EWE GLP   ++TPLSQ LI  EL+ AFSISPEP +T +DV RAS N
Sbjct: 6    KTSEYDEER--VMEWEVGLPTANDLTPLSQPLIPPELANAFSISPEPHRTTLDVNRASRN 63

Query: 1497 TLSSLRRHNSA-PAKTMLNPDGISATEPNNDEDI---GGAQTVPRDNKVESHAKNAANKC 1330
            TLS++R   S   A +  N       E + DED    G      +  K+E  A+ A +  
Sbjct: 64   TLSTIRGGGSVHQAFSSSNNHHHEEEEEDEDEDTDRDGSGSDSRKHRKIECVAEEADSAV 123

Query: 1329 XXXXXXXXXXXXXXXXXXXGDENEDQSER-ALKRQRLVWTPELHKRFVDVVAHLGIKNAV 1153
                                   E+ +ER A+KR RLVWTP+LHKRFVDVVAHLGIKNAV
Sbjct: 124  ---------------------RTENSAERTAVKRPRLVWTPQLHKRFVDVVAHLGIKNAV 162

Query: 1152 PKTIMQLMNVEGLTRENVASHLQKYRLYLKR-QGHSDDGAGPADPIFSSSPKFNPFHKDG 976
            PKTIMQLMNVEGLTRENVASHLQKYRLYLKR QG S++G   +D +F+S+P     H   
Sbjct: 163  PKTIMQLMNVEGLTRENVASHLQKYRLYLKRMQGLSNEGPSSSDQLFASTPVPQSLHDSA 222

Query: 975  P--YXXXXXXXXXXXXXXXXXXXXXPYGNPMVQMPVMGIAHNSQSAPHGGGLYPSPCGSG 802
            P                        PY  PM+ MPV+G+ H                  G
Sbjct: 223  PPSAHSHGHSHGHASAHLPVPMMSMPYPPPMMSMPVLGMPH----------------AHG 266

Query: 801  SFGMSMPHSGDRGQMH 754
              G++MP S      H
Sbjct: 267  HMGITMPTSSATSAYH 282


>ref|XP_006846291.1| hypothetical protein AMTR_s00012p00251530 [Amborella trichopoda]
            gi|548849061|gb|ERN07966.1| hypothetical protein
            AMTR_s00012p00251530 [Amborella trichopoda]
          Length = 287

 Score =  197 bits (502), Expect = 1e-47
 Identities = 115/229 (50%), Positives = 143/229 (62%), Gaps = 1/229 (0%)
 Frame = -2

Query: 1656 EMEGVAEWERGLPGPEEMTPLSQILITAELSCAFSISPEPCKTLMDVTRASHNTLSSLRR 1477
            E + V EWE GLP  E++TPLSQ+LI  EL+ AFSISPE C++++DV RAS NT+S+LRR
Sbjct: 15   EEDHVMEWELGLPRAEDLTPLSQVLIPPELASAFSISPEACRSMLDVNRASQNTVSTLRR 74

Query: 1476 HNSAPAKTMLNPDGISATEPNNDEDIGGAQTVPRDNKVESHAKNAANKCXXXXXXXXXXX 1297
              + P      P      E             P +   ES A+  +++            
Sbjct: 75   Q-ALPTNLKSLPSFSLQQEHE-----------PTEPATESRARKFSDR---------EAT 113

Query: 1296 XXXXXXXXGDENEDQSERALKRQRLVWTPELHKRFVDVVAHLGIKNAVPKTIMQLMNVEG 1117
                     D  ++QS R LKR RLVWTP+LHKRFVDVVAHLGIKNAVPKTIMQLMNVEG
Sbjct: 114  DEIMDSSRPDPVDEQSARTLKRPRLVWTPQLHKRFVDVVAHLGIKNAVPKTIMQLMNVEG 173

Query: 1116 LTRENVASHLQKYRLYLKR-QGHSDDGAGPADPIFSSSPKFNPFHKDGP 973
            LTRENVASHLQKYRLYLKR QG S +G   +D +F+S+P  +   ++ P
Sbjct: 174  LTRENVASHLQKYRLYLKRMQGLSSEGPSSSDHLFASTPVPHSLAREEP 222


>gb|EMJ06781.1| hypothetical protein PRUPE_ppa008837mg [Prunus persica]
          Length = 317

 Score =  197 bits (500), Expect = 2e-47
 Identities = 127/285 (44%), Positives = 156/285 (54%), Gaps = 2/285 (0%)
 Frame = -2

Query: 1671 EDVDEEMEGVAEWERGLPGPEEMTPLSQILITAELSCAFSISPEPCKTLMDVTRASHNTL 1492
            +D D+E   V EWE GLP  +++TPLSQ LI  EL+ AFSISPEPC+T +DV RAS  T+
Sbjct: 18   DDGDDETR-VLEWEAGLPSADDLTPLSQPLIPIELASAFSISPEPCRTAVDVNRASQKTV 76

Query: 1491 SSLRRHNSAPAKTMLNPDGISATEPNNDEDIGGAQTVPRDNKVESHAKNAANKCXXXXXX 1312
            S+LR      A +        + + N  +D+        +N    +A + + K       
Sbjct: 77   STLR----GAAHSQGFSSNYKSFDENRSDDVEPMVVEVDENDRYGNAGSDSRKSRKIDCT 132

Query: 1311 XXXXXXXXXXXXXGDENEDQSERALKRQRLVWTPELHKRFVDVVAHLGIKNAVPKTIMQL 1132
                          D   D S R LKR RLVWTP+LHKRFVDVVAHLGIKNAVPKTIMQL
Sbjct: 133  EEADSALRTENFSAD---DTSARTLKRPRLVWTPQLHKRFVDVVAHLGIKNAVPKTIMQL 189

Query: 1131 MNVEGLTRENVASHLQKYRLYLKR-QGHSDD-GAGPADPIFSSSPKFNPFHKDGPYXXXX 958
            MNVEGLTRENVASHLQKYRLYLKR QG S D G   +D +F+S+P     H++       
Sbjct: 190  MNVEGLTRENVASHLQKYRLYLKRMQGLSGDVGPSSSDQLFASTPVPQSLHQESG-GGSS 248

Query: 957  XXXXXXXXXXXXXXXXXPYGNPMVQMPVMGIAHNSQSAPHGGGLY 823
                             PY   M+ MPV+G+ H        GG Y
Sbjct: 249  QAGQSHGHGNGQFSFSMPYPPTMMPMPVLGLTHGHGHMGMPGGGY 293


>ref|XP_003606714.1| Two-component response regulator ARR1 [Medicago truncatula]
            gi|357472893|ref|XP_003606731.1| Two-component response
            regulator ARR1 [Medicago truncatula]
            gi|355507769|gb|AES88911.1| Two-component response
            regulator ARR1 [Medicago truncatula]
            gi|355507786|gb|AES88928.1| Two-component response
            regulator ARR1 [Medicago truncatula]
          Length = 312

 Score =  195 bits (496), Expect = 5e-47
 Identities = 132/308 (42%), Positives = 165/308 (53%), Gaps = 11/308 (3%)
 Frame = -2

Query: 1671 EDVDEEMEGVAEWERGLPGPEEMTPLSQILITAELSCAFSISPEPCKTLMDVTRASHNTL 1492
            E+V  + E V EWE+GLP   ++TPLS  LI  EL+ AFSISPEP +TL DV RAS NTL
Sbjct: 3    EEVRTDEERVTEWEKGLPNLHDLTPLSMALIPPELASAFSISPEPHRTLFDVNRASRNTL 62

Query: 1491 SSLRRHNSAPAKTMLNPD---GISATEPNNDEDIGGAQTVPRDN-KVESHAKNAANKCXX 1324
            S LR  NS      +N      I   E + + D  G+ +  R + K++S  +    +   
Sbjct: 63   SLLRS-NSGTITNQINQTMSCEIEDIEEDEEPDRDGSGSDSRKHRKIDSVIEEVEAEA-- 119

Query: 1323 XXXXXXXXXXXXXXXXXGDENEDQSERALKRQRLVWTPELHKRFVDVVAHLGIKNAVPKT 1144
                               ++  ++   +KR RLVWTP+LHKRFVDVVAHLGIKNAVPKT
Sbjct: 120  -------------------DSAVRTTETIKRPRLVWTPQLHKRFVDVVAHLGIKNAVPKT 160

Query: 1143 IMQLMNVEGLTRENVASHLQKYRLYLKR-QGHSDDGAGPADPIFSSSPKFNPFHKDGPYX 967
            IMQLMNVEGLTRENVASHLQKYRLYLKR QG S+D    +D +F+S+P     H+     
Sbjct: 161  IMQLMNVEGLTRENVASHLQKYRLYLKRMQGLSNDAPSSSDHLFASTPVPQSLHETASAN 220

Query: 966  XXXXXXXXXXXXXXXXXXXXPYGNP----MVQMPVMGIAHNSQSAPHG--GGLYPSPCGS 805
                                PY  P    M   P++G+ H+    PHG  G   P P G 
Sbjct: 221  HSNSHSHSHSHSHHSVTIPMPYPPPPSSMMSMPPMIGMGHH----PHGHMGMSLPPPSGG 276

Query: 804  GSFGMSMP 781
             S   S P
Sbjct: 277  SSSYRSHP 284


>ref|XP_006424879.1| hypothetical protein CICLE_v10028658mg [Citrus clementina]
            gi|567864462|ref|XP_006424880.1| hypothetical protein
            CICLE_v10028658mg [Citrus clementina]
            gi|567864464|ref|XP_006424881.1| hypothetical protein
            CICLE_v10028658mg [Citrus clementina]
            gi|568870356|ref|XP_006488371.1| PREDICTED: transcription
            factor LUX-like isoform X1 [Citrus sinensis]
            gi|557526813|gb|ESR38119.1| hypothetical protein
            CICLE_v10028658mg [Citrus clementina]
            gi|557526814|gb|ESR38120.1| hypothetical protein
            CICLE_v10028658mg [Citrus clementina]
            gi|557526815|gb|ESR38121.1| hypothetical protein
            CICLE_v10028658mg [Citrus clementina]
          Length = 378

 Score =  193 bits (490), Expect = 2e-46
 Identities = 114/227 (50%), Positives = 141/227 (62%), Gaps = 5/227 (2%)
 Frame = -2

Query: 1668 DVDEEMEGVAEWERGLPGPEEMTPLSQILITAELSCAFSISPEPCKTLMDVTRASHNTLS 1489
            D + + E + EWE GLP   ++TPLSQ LI  EL+ AFSI P PC+T +DV RAS  TLS
Sbjct: 17   DYNGDDERIPEWEMGLPNGTDLTPLSQSLIPPELASAFSILPVPCRTHLDVNRASQTTLS 76

Query: 1488 SLR--RHNSAPAKTMLNPDGISATEPNNDEDIGGAQTVPRDNK-VESHAKNAANKCXXXX 1318
            S+R  R +S  +    N + +     N D  +   +   ++    +S +K+    C    
Sbjct: 77   SIRGSRAHSLSSTDNNNSNNLKTLTENRDPMVTETEEQDQNGSFADSRSKSRRPDCTEEA 136

Query: 1317 XXXXXXXXXXXXXXXGDENEDQSERALKRQRLVWTPELHKRFVDVVAHLGIKNAVPKTIM 1138
                            + NED S R LKR RLVWTP+LHKRFVDVVAHLGIKNAVPKTIM
Sbjct: 137  DSALRTD---------NSNEDPSARTLKRPRLVWTPQLHKRFVDVVAHLGIKNAVPKTIM 187

Query: 1137 QLMNVEGLTRENVASHLQKYRLYLKR-QGHSDDGAGPAD-PIFSSSP 1003
            QLMNVEGLTRENVASHLQKYRLYLKR QG S+D    +D  +F+S+P
Sbjct: 188  QLMNVEGLTRENVASHLQKYRLYLKRMQGLSNDDPSSSDHQLFASTP 234


>gb|EXC10705.1| Two-component response regulator [Morus notabilis]
          Length = 329

 Score =  192 bits (488), Expect = 4e-46
 Identities = 125/303 (41%), Positives = 158/303 (52%), Gaps = 3/303 (0%)
 Frame = -2

Query: 1650 EGVAEWERGLPGPEEMTPLSQILITAELSCAFSISPEPCKTLMDVTRASHNTLSSLRRHN 1471
            E V EWE GLP  +++TPLSQ LI  EL+ AFSISP   +TL+DV +AS +TLSSLR   
Sbjct: 20   ERVLEWEAGLPSVDDLTPLSQPLIPPELASAFSISPVQYRTLLDVNQASEDTLSSLRGIT 79

Query: 1470 SAPA--KTMLNPDGISATEPNNDEDIGGAQTVPRDNKVESHAKNAANKCXXXXXXXXXXX 1297
             +P   K++      +  E + ++  G      +  K+   A+   +             
Sbjct: 80   QSPNIFKSLGESHESAVVEADENDRDGSGSDSRKSRKIMDCAEEDDSALPVD-------- 131

Query: 1296 XXXXXXXXGDENEDQSERALKRQRLVWTPELHKRFVDVVAHLGIKNAVPKTIMQLMNVEG 1117
                     +  +D + R LKR RLVWTP LHKRFVDVV HLGIKNAVPKTIMQLMNVEG
Sbjct: 132  ---------NSGDDPAARTLKRPRLVWTPHLHKRFVDVVGHLGIKNAVPKTIMQLMNVEG 182

Query: 1116 LTRENVASHLQKYRLYLKR-QGHSDDGAGPADPIFSSSPKFNPFHKDGPYXXXXXXXXXX 940
            LTRENVASHLQKYRLYLKR QG S +G   +D +FSS+P     H+              
Sbjct: 183  LTRENVASHLQKYRLYLKRMQGLSTEGPSASDQLFSSTPVPQSLHEFSTASGHSNGHSHG 242

Query: 939  XXXXXXXXXXXPYGNPMVQMPVMGIAHNSQSAPHGGGLYPSPCGSGSFGMSMPHSGDRGQ 760
                           P++ MPV+G+ H      HG G    P G+   G    H G    
Sbjct: 243  NGHFQVPVPIPY--PPVMPMPVLGMTH------HGHGHMGMPVGAPPKGAVGYHHGFESH 294

Query: 759  MHN 751
             H+
Sbjct: 295  HHH 297


>ref|NP_190248.1| transcription factor LUX [Arabidopsis thaliana]
            gi|79314533|ref|NP_001030823.1| transcription factor LUX
            [Arabidopsis thaliana] gi|75337463|sp|Q9SNB4.1|PCL1_ARATH
            RecName: Full=Transcription factor LUX; AltName:
            Full=Protein LUX ARRHYTHMO; AltName: Full=Protein
            PHYTOCLOCK 1 gi|6523067|emb|CAB62334.1| putative protein
            [Arabidopsis thaliana] gi|30102630|gb|AAP21233.1|
            At3g46640 [Arabidopsis thaliana]
            gi|71067050|dbj|BAE16277.1| PHYTOCLOCK 1 [Arabidopsis
            thaliana] gi|110743672|dbj|BAE99673.1| hypothetical
            protein [Arabidopsis thaliana]
            gi|332644665|gb|AEE78186.1| protein phytoclock 1
            [Arabidopsis thaliana] gi|332644666|gb|AEE78187.1|
            protein phytoclock 1 [Arabidopsis thaliana]
          Length = 323

 Score =  188 bits (477), Expect = 8e-45
 Identities = 113/225 (50%), Positives = 137/225 (60%), Gaps = 3/225 (1%)
 Frame = -2

Query: 1668 DVDEEMEGVAEWERGLPGPEEMTPLSQILITAELSCAFSISPEPCKTLMDVTRASHNTLS 1489
            DV  + + V+EWE GLP  E++  LS  LI   L+ AFSI+PE  +T+ DV RAS  TLS
Sbjct: 11   DVSGDGDRVSEWEMGLPSDEDLASLSYSLIPPNLAMAFSITPERSRTIQDVNRASETTLS 70

Query: 1488 SLRRHNSAPAKTMLNPDGISATEPNN--DEDIGGAQTVPRDNKVESHAKNAANKCXXXXX 1315
            SLR  +S P  +  N         NN  +ED  G+ +   D+K     K   +       
Sbjct: 71   SLRGGSSGPNTSSSN---------NNVEEEDRVGSSSPGSDSK-----KQKTSNGDGDDG 116

Query: 1314 XXXXXXXXXXXXXXGDENEDQSERALKRQRLVWTPELHKRFVDVVAHLGIKNAVPKTIMQ 1135
                              ED S + LKR RLVWTP+LHKRFVDVVAHLGIKNAVPKTIMQ
Sbjct: 117  GGVDPDSAMAAEEGDSGTEDLSGKTLKRPRLVWTPQLHKRFVDVVAHLGIKNAVPKTIMQ 176

Query: 1134 LMNVEGLTRENVASHLQKYRLYLKR-QGHSDDGAGPADPIFSSSP 1003
            LMNVEGLTRENVASHLQKYRLYLKR QG +++G   +D +FSS+P
Sbjct: 177  LMNVEGLTRENVASHLQKYRLYLKRMQGLTNEGPSASDKLFSSTP 221


>ref|XP_006418876.1| hypothetical protein EUTSA_v10002605mg [Eutrema salsugineum]
            gi|557096804|gb|ESQ37312.1| hypothetical protein
            EUTSA_v10002605mg [Eutrema salsugineum]
          Length = 335

 Score =  188 bits (477), Expect = 8e-45
 Identities = 114/234 (48%), Positives = 141/234 (60%), Gaps = 9/234 (3%)
 Frame = -2

Query: 1677 KMEDVDEEMEG--VAEWERGLPGPEEMTPLSQILITAELSCAFSISPEPCKTLMDVTRAS 1504
            +M D D   +G  V EWE GLP  E++  LS  LI A L+ AFSI+PE  +T+ DV RAS
Sbjct: 6    RMSDYDVSGDGDRVTEWEMGLPSDEDLASLSHSLIPANLAMAFSITPEKSRTIQDVNRAS 65

Query: 1503 HNTLSSLRRHNSAPAKTMLNPD------GISATEPNNDEDIGGAQTVPRDNKVESHAKNA 1342
              T SSLR  +S P  +  N +      G++A E    ED  G+ +   D+K +  +   
Sbjct: 66   ETTFSSLRGGSSGPNTSSSNNNSNSFKTGLAAEE----EDRVGSSSPGSDSKKQKTSDGD 121

Query: 1341 ANKCXXXXXXXXXXXXXXXXXXXGDENEDQSERALKRQRLVWTPELHKRFVDVVAHLGIK 1162
             +                         ED + + LKR RLVWTP+LHKRFVDVVAHLGIK
Sbjct: 122  GD----GGGGVDLSTADVTAEEGDSGTEDPTGKTLKRPRLVWTPQLHKRFVDVVAHLGIK 177

Query: 1161 NAVPKTIMQLMNVEGLTRENVASHLQKYRLYLKR-QGHSDDGAGPADPIFSSSP 1003
            NAVPKTIMQLMNVEGLTRENVASHLQKYRLYLKR QG + +G   +D +FSS+P
Sbjct: 178  NAVPKTIMQLMNVEGLTRENVASHLQKYRLYLKRMQGLTTEGPSTSDKLFSSTP 231


>ref|NP_001190022.1| transcription factor LUX [Arabidopsis thaliana]
            gi|332644667|gb|AEE78188.1| protein phytoclock 1
            [Arabidopsis thaliana]
          Length = 324

 Score =  188 bits (477), Expect = 8e-45
 Identities = 113/225 (50%), Positives = 137/225 (60%), Gaps = 3/225 (1%)
 Frame = -2

Query: 1668 DVDEEMEGVAEWERGLPGPEEMTPLSQILITAELSCAFSISPEPCKTLMDVTRASHNTLS 1489
            DV  + + V+EWE GLP  E++  LS  LI   L+ AFSI+PE  +T+ DV RAS  TLS
Sbjct: 11   DVSGDGDRVSEWEMGLPSDEDLASLSYSLIPPNLAMAFSITPERSRTIQDVNRASETTLS 70

Query: 1488 SLRRHNSAPAKTMLNPDGISATEPNN--DEDIGGAQTVPRDNKVESHAKNAANKCXXXXX 1315
            SLR  +S P  +  N         NN  +ED  G+ +   D+K     K   +       
Sbjct: 71   SLRGGSSGPNTSSSN---------NNVEEEDRVGSSSPGSDSK-----KQKTSNGDGDDG 116

Query: 1314 XXXXXXXXXXXXXXGDENEDQSERALKRQRLVWTPELHKRFVDVVAHLGIKNAVPKTIMQ 1135
                              ED S + LKR RLVWTP+LHKRFVDVVAHLGIKNAVPKTIMQ
Sbjct: 117  GGVDPDSAMAAEEGDSGTEDLSGKTLKRPRLVWTPQLHKRFVDVVAHLGIKNAVPKTIMQ 176

Query: 1134 LMNVEGLTRENVASHLQKYRLYLKR-QGHSDDGAGPADPIFSSSP 1003
            LMNVEGLTRENVASHLQKYRLYLKR QG +++G   +D +FSS+P
Sbjct: 177  LMNVEGLTRENVASHLQKYRLYLKRMQGLTNEGPSASDKLFSSTP 221


>ref|XP_006291467.1| hypothetical protein CARUB_v10017603mg [Capsella rubella]
            gi|565467176|ref|XP_006291468.1| hypothetical protein
            CARUB_v10017603mg [Capsella rubella]
            gi|482560174|gb|EOA24365.1| hypothetical protein
            CARUB_v10017603mg [Capsella rubella]
            gi|482560175|gb|EOA24366.1| hypothetical protein
            CARUB_v10017603mg [Capsella rubella]
          Length = 333

 Score =  187 bits (475), Expect = 1e-44
 Identities = 114/228 (50%), Positives = 140/228 (61%), Gaps = 3/228 (1%)
 Frame = -2

Query: 1677 KMEDVDEEMEG--VAEWERGLPGPEEMTPLSQILITAELSCAFSISPEPCKTLMDVTRAS 1504
            +M D D   +G  V EWE GLP  E++  LS  LI   L+ AFSI+PE  +T+ DV RAS
Sbjct: 6    RMSDYDVSGDGDRVMEWEMGLPSDEDLASLSYSLIPPNLAMAFSITPERSRTVQDVNRAS 65

Query: 1503 HNTLSSLRRHNSAPAKTMLNPDGISATEPNNDEDIGGAQTVPRDNKVESHAKNAANKCXX 1324
              TLSSLR  +S P  +  N +  +A E    ED  G+ +   D+K +  +    +    
Sbjct: 66   ETTLSSLRSGSSGPNTSSSNNNS-NAVEV---EDRVGSSSPGSDSKKQKTSDGEGD---- 117

Query: 1323 XXXXXXXXXXXXXXXXXGDENEDQSERALKRQRLVWTPELHKRFVDVVAHLGIKNAVPKT 1144
                                 ED S + LKR RLVWTP+LHKRFVDVVAHLGIKNAVPKT
Sbjct: 118  -GDGGVDPDAAMAAEEGDSGTEDLSGKTLKRPRLVWTPQLHKRFVDVVAHLGIKNAVPKT 176

Query: 1143 IMQLMNVEGLTRENVASHLQKYRLYLKR-QGHSDDGAGPADPIFSSSP 1003
            IMQLMNVEGLTRENVASHLQKYRLYLKR QG +++G   +D +FSS+P
Sbjct: 177  IMQLMNVEGLTRENVASHLQKYRLYLKRMQGLTNEGPSASDKLFSSTP 224


>dbj|BAH20438.1| AT3G46640 [Arabidopsis thaliana]
          Length = 323

 Score =  187 bits (474), Expect = 2e-44
 Identities = 112/225 (49%), Positives = 137/225 (60%), Gaps = 3/225 (1%)
 Frame = -2

Query: 1668 DVDEEMEGVAEWERGLPGPEEMTPLSQILITAELSCAFSISPEPCKTLMDVTRASHNTLS 1489
            DV  + + V+EWE GLP  E++  LS  LI   L+ AFSI+PE  +T+ DV RAS  TLS
Sbjct: 11   DVSGDGDRVSEWEMGLPSDEDLASLSYSLIPPNLAMAFSITPERSRTIQDVNRASETTLS 70

Query: 1488 SLRRHNSAPAKTMLNPDGISATEPNN--DEDIGGAQTVPRDNKVESHAKNAANKCXXXXX 1315
            SLR  +S P  +  N         NN  +ED  G+ +   D+K     K   +       
Sbjct: 71   SLRGGSSGPNTSSSN---------NNVEEEDRVGSSSPGSDSK-----KQKTSNGDGDDG 116

Query: 1314 XXXXXXXXXXXXXXGDENEDQSERALKRQRLVWTPELHKRFVDVVAHLGIKNAVPKTIMQ 1135
                              ED S + LKR RLVWTP+LHKRFVDVVAHLGIKNAVPKTIMQ
Sbjct: 117  GGVDPDSAMAAEEGDSGTEDLSGKTLKRPRLVWTPQLHKRFVDVVAHLGIKNAVPKTIMQ 176

Query: 1134 LMNVEGLTRENVASHLQKYRLYLKR-QGHSDDGAGPADPIFSSSP 1003
            +MNVEGLTRENVASHLQKYRLYLKR QG +++G   +D +FSS+P
Sbjct: 177  VMNVEGLTRENVASHLQKYRLYLKRMQGLTNEGPSASDKLFSSTP 221


>ref|XP_002313898.2| hypothetical protein POPTR_0009s03990g [Populus trichocarpa]
            gi|550330983|gb|EEE87853.2| hypothetical protein
            POPTR_0009s03990g [Populus trichocarpa]
          Length = 349

 Score =  186 bits (472), Expect = 3e-44
 Identities = 113/227 (49%), Positives = 140/227 (61%), Gaps = 4/227 (1%)
 Frame = -2

Query: 1671 EDVDEEMEGVAEWERGLPGPEEMTPLSQILITAELSCAFSISPEPCKTLMDVTRASHNTL 1492
            E+++ + E VA WE GLP P+++TPLSQ LI  EL+ AFSI PEP +T +DV RA   TL
Sbjct: 17   ENINGDDERVAVWEIGLPTPDDLTPLSQTLIPPELASAFSIFPEPHRTPLDVNRACQTTL 76

Query: 1491 SSLRRHNSAPAKTMLNPDGISATEPNNDEDIGGAQTVPRDNKVESHAKNAANKCXXXXXX 1312
            S+LR      A + +N    + T     + I     V  DNK  +  ++ +         
Sbjct: 77   SNLR--GQLNALSSINFKSFNETTGQTHDPI----VVDLDNKTGAVDRDGSGS-EARKLR 129

Query: 1311 XXXXXXXXXXXXXGDENEDQSE---RALKRQRLVWTPELHKRFVDVVAHLGIKNAVPKTI 1141
                          +  ED S    R LKR RLVWTP+LHKRFVDVV+HLGIKNAVPKTI
Sbjct: 130  RVDSEEEDSALRTDNSAEDPSSAAARTLKRPRLVWTPQLHKRFVDVVSHLGIKNAVPKTI 189

Query: 1140 MQLMNVEGLTRENVASHLQKYRLYLKR-QGHSDDGAGPADPIFSSSP 1003
            MQLMNVEGLTRENVASHLQKYRLYLKR QG S +G   +D +F+S+P
Sbjct: 190  MQLMNVEGLTRENVASHLQKYRLYLKRMQGLSSEGPSASDQLFASTP 236


>ref|XP_002875796.1| hypothetical protein ARALYDRAFT_485038 [Arabidopsis lyrata subsp.
            lyrata] gi|297321634|gb|EFH52055.1| hypothetical protein
            ARALYDRAFT_485038 [Arabidopsis lyrata subsp. lyrata]
          Length = 325

 Score =  184 bits (468), Expect = 8e-44
 Identities = 109/223 (48%), Positives = 135/223 (60%), Gaps = 1/223 (0%)
 Frame = -2

Query: 1668 DVDEEMEGVAEWERGLPGPEEMTPLSQILITAELSCAFSISPEPCKTLMDVTRASHNTLS 1489
            DV  + + V+EWE GLP  E++  LS  LI   L+ AFSI+PE  +T+ DV RAS  T S
Sbjct: 11   DVSGDGDRVSEWEMGLPSDEDLASLSYSLIPPNLAMAFSITPERSRTIQDVNRASETTFS 70

Query: 1488 SLRRHNSAPAKTMLNPDGISATEPNNDEDIGGAQTVPRDNKVESHAKNAANKCXXXXXXX 1309
            SLR  +S    +  N +  +  E    ED  G+ +   D+K +  +              
Sbjct: 71   SLRGGSSGQNTSSSNNNSNAVEE----EDRVGSSSPGSDSKKQKISDGGGG-------GD 119

Query: 1308 XXXXXXXXXXXXGDENEDQSERALKRQRLVWTPELHKRFVDVVAHLGIKNAVPKTIMQLM 1129
                            ED S + LKR RLVWTP+LHKRFVDVVAHLGIKNAVPKTIMQLM
Sbjct: 120  GGVDPDAAAEEGDSGTEDLSGKTLKRPRLVWTPQLHKRFVDVVAHLGIKNAVPKTIMQLM 179

Query: 1128 NVEGLTRENVASHLQKYRLYLKR-QGHSDDGAGPADPIFSSSP 1003
            NVEGLTRENVASHLQKYRLYLKR QG +++G   +D +FSS+P
Sbjct: 180  NVEGLTRENVASHLQKYRLYLKRMQGLTNEGPSASDKLFSSTP 222


>dbj|BAE16280.1| NbPCL1 [Nicotiana benthamiana]
          Length = 312

 Score =  182 bits (463), Expect = 3e-43
 Identities = 108/215 (50%), Positives = 131/215 (60%), Gaps = 1/215 (0%)
 Frame = -2

Query: 1644 VAEWERGLPGPEEMTPLSQILITAELSCAFSISPEPCKTLMDVTRASHNTLSSLRRHNSA 1465
            + EWE GLP  +++TPLSQ LI  EL+ AF ISPEP KT+ DV RAS NT SSLR   S 
Sbjct: 20   ILEWEDGLPSLDDITPLSQALIPPELASAFKISPEPAKTMTDVNRASENTFSSLR--GSG 77

Query: 1464 PAKTMLNPDGISATEPNNDEDIGGAQTVPRDNKVESHAKNAANKCXXXXXXXXXXXXXXX 1285
            P + +     +S+ E  +  D    + +  +      A      C               
Sbjct: 78   PLQQL---QILSSPETEHGSDPRKTRRIDPEMLEADSALPRNENCGGGDD---------- 124

Query: 1284 XXXXGDENEDQSERALKRQRLVWTPELHKRFVDVVAHLGIKNAVPKTIMQLMNVEGLTRE 1105
                   N+  S+   KR RLVWTP+LHKRFVDVVAHLGIKNAVPKTIMQLMNVEGLTRE
Sbjct: 125  -----SNNKSASKTLNKRPRLVWTPQLHKRFVDVVAHLGIKNAVPKTIMQLMNVEGLTRE 179

Query: 1104 NVASHLQKYRLYLKR-QGHSDDGAGPADPIFSSSP 1003
            NVASHLQKYRLYLKR QG S++G   +D +F+ +P
Sbjct: 180  NVASHLQKYRLYLKRMQGLSNEGPTSSDHLFAFTP 214