BLASTX nr result

ID: Dioscorea21_contig00039453 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Dioscorea21_contig00039453
         (353 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002299601.1| predicted protein [Populus trichocarpa] gi|2...   148   5e-34
dbj|BAJ53238.1| JHL06P13.19 [Jatropha curcas]                         146   2e-33
ref|XP_004135843.1| PREDICTED: probable polygalacturonase At1g80...   146   2e-33
ref|XP_002517603.1| Polygalacturonase precursor, putative [Ricin...   146   2e-33
ref|NP_001234256.1| polygalacturonase [Solanum lycopersicum] gi|...   144   6e-33

>ref|XP_002299601.1| predicted protein [Populus trichocarpa] gi|222846859|gb|EEE84406.1|
           predicted protein [Populus trichocarpa]
          Length = 447

 Score =  148 bits (373), Expect = 5e-34
 Identities = 74/116 (63%), Positives = 81/116 (69%)
 Frame = +2

Query: 5   LVAPPYSPNTDGIHISASTSVVIQDSTIETGDDCXXXXXXXXXXXXXXXACGPGHGISIG 184
           + +P  SPNTDGIHISAS  V I+DS + TGDDC               ACGPGHGISIG
Sbjct: 223 VTSPAVSPNTDGIHISASHGVKIKDSVVRTGDDCISIVSNSSRIKIRNIACGPGHGISIG 282

Query: 185 SLGKSRSLSQVHDVRVDGACISNTENGVRIKTWQGGCGFVSNIVFHNIFMRNVSNP 352
           SLGKS S S V DV VDGA +SNT+NGVRIKTWQGG G  +NI F NIFM NVSNP
Sbjct: 283 SLGKSNSSSLVRDVMVDGAFLSNTDNGVRIKTWQGGGGNATNITFQNIFMENVSNP 338


>dbj|BAJ53238.1| JHL06P13.19 [Jatropha curcas]
          Length = 443

 Score =  146 bits (369), Expect = 2e-33
 Identities = 69/116 (59%), Positives = 83/116 (71%)
 Frame = +2

Query: 5   LVAPPYSPNTDGIHISASTSVVIQDSTIETGDDCXXXXXXXXXXXXXXXACGPGHGISIG 184
           +++P +SPNTDGIHISAS  V ++DS + TGDDC               ACGPGHGISIG
Sbjct: 219 VISPSFSPNTDGIHISASRGVEVRDSIVRTGDDCISIVSNSSRIKIKNFACGPGHGISIG 278

Query: 185 SLGKSRSLSQVHDVRVDGACISNTENGVRIKTWQGGCGFVSNIVFHNIFMRNVSNP 352
           SLGK  S S+V+D+ VDGA +SNT+NGVRIKTWQGG G  + I F N+FM NVSNP
Sbjct: 279 SLGKYNSSSRVYDIMVDGAFLSNTDNGVRIKTWQGGSGNATEIRFQNVFMENVSNP 334


>ref|XP_004135843.1| PREDICTED: probable polygalacturonase At1g80170-like [Cucumis
           sativus] gi|449491014|ref|XP_004158774.1| PREDICTED: LOW
           QUALITY PROTEIN: probable polygalacturonase
           At1g80170-like [Cucumis sativus]
          Length = 371

 Score =  146 bits (368), Expect = 2e-33
 Identities = 68/117 (58%), Positives = 85/117 (72%)
 Frame = +2

Query: 2   KLVAPPYSPNTDGIHISASTSVVIQDSTIETGDDCXXXXXXXXXXXXXXXACGPGHGISI 181
           K++AP +SPNTDGIHISAS  V++++S I TGDDC                CGPGHGISI
Sbjct: 145 KVIAPAFSPNTDGIHISASKGVMVKNSIISTGDDCVSIVGNSSRILIKDITCGPGHGISI 204

Query: 182 GSLGKSRSLSQVHDVRVDGACISNTENGVRIKTWQGGCGFVSNIVFHNIFMRNVSNP 352
           GSLGK  + +QV +VRVDGA +SNT+NG RIKTWQGG G  ++I+F N+ M+NVSNP
Sbjct: 205 GSLGKRNTSAQVRNVRVDGAVLSNTKNGARIKTWQGGSGSATDIIFKNMLMKNVSNP 261


>ref|XP_002517603.1| Polygalacturonase precursor, putative [Ricinus communis]
           gi|223543235|gb|EEF44767.1| Polygalacturonase precursor,
           putative [Ricinus communis]
          Length = 424

 Score =  146 bits (368), Expect = 2e-33
 Identities = 69/116 (59%), Positives = 83/116 (71%)
 Frame = +2

Query: 5   LVAPPYSPNTDGIHISASTSVVIQDSTIETGDDCXXXXXXXXXXXXXXXACGPGHGISIG 184
           + +P +SPNTDGIHISAS  V I+DS + TGDDC               ACGPGHGISIG
Sbjct: 200 VTSPAFSPNTDGIHISASRHVEIRDSIVRTGDDCISIVGNSSRIKIRKIACGPGHGISIG 259

Query: 185 SLGKSRSLSQVHDVRVDGACISNTENGVRIKTWQGGCGFVSNIVFHNIFMRNVSNP 352
           SLGK  S S+VHD+ +DGA +SNT+NG+RIKTWQGG G  + I F N+FM+NVSNP
Sbjct: 260 SLGKYDSSSKVHDILIDGAFLSNTDNGLRIKTWQGGSGNATEIKFQNVFMKNVSNP 315


>ref|NP_001234256.1| polygalacturonase [Solanum lycopersicum]
           gi|7381227|gb|AAF61444.1|AF138858_1 polygalacturonase
           [Solanum lycopersicum]
          Length = 452

 Score =  144 bits (364), Expect = 6e-33
 Identities = 71/114 (62%), Positives = 80/114 (70%)
 Frame = +2

Query: 11  APPYSPNTDGIHISASTSVVIQDSTIETGDDCXXXXXXXXXXXXXXXACGPGHGISIGSL 190
           AP  SPNTD IHIS+ST V ++D  I TGDDC                CGPGHGISIGSL
Sbjct: 230 APGDSPNTDAIHISSSTQVNVKDCIIGTGDDCISIVGNSSRIKVKDIVCGPGHGISIGSL 289

Query: 191 GKSRSLSQVHDVRVDGACISNTENGVRIKTWQGGCGFVSNIVFHNIFMRNVSNP 352
           GKS S SQV++V V+GA ISNTENGVRIKTWQGG GFV  + F N++M NVSNP
Sbjct: 290 GKSNSFSQVYNVHVNGASISNTENGVRIKTWQGGSGFVKKVSFENVWMENVSNP 343


Top