BLASTX nr result

ID: Dioscorea21_contig00036854 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Dioscorea21_contig00036854
         (324 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI39785.3| unnamed protein product [Vitis vinifera]               88   6e-16
emb|CAN74282.1| hypothetical protein VITISV_016708 [Vitis vinifera]    88   6e-16
ref|XP_002267586.2| PREDICTED: E3 ubiquitin-protein ligase At4g1...    86   2e-15
ref|XP_002298883.1| predicted protein [Populus trichocarpa] gi|2...    81   1e-13
gb|ACU18237.1| unknown [Glycine max]                                   76   3e-12

>emb|CBI39785.3| unnamed protein product [Vitis vinifera]
          Length = 343

 Score = 88.2 bits (217), Expect = 6e-16
 Identities = 42/66 (63%), Positives = 52/66 (78%), Gaps = 5/66 (7%)
 Frame = -3

Query: 253 MSHVGEDN-----NNGTARSPPAVFLVRTAVRISRARWFSFLRRVFWYQNGSRSDVMSNP 89
           +S  GED       N ++R+PP+ FL+RTA+RISRARWFSFLRRVF YQNGSRSD+ +NP
Sbjct: 24  LSPAGEDRMAAGVRNRSSRAPPSSFLIRTAMRISRARWFSFLRRVFHYQNGSRSDLGANP 83

Query: 88  FNSKSW 71
           FNS +W
Sbjct: 84  FNSSTW 89


>emb|CAN74282.1| hypothetical protein VITISV_016708 [Vitis vinifera]
          Length = 343

 Score = 88.2 bits (217), Expect = 6e-16
 Identities = 42/66 (63%), Positives = 52/66 (78%), Gaps = 5/66 (7%)
 Frame = -3

Query: 253 MSHVGEDN-----NNGTARSPPAVFLVRTAVRISRARWFSFLRRVFWYQNGSRSDVMSNP 89
           +S  GED       N ++R+PP+ FL+RTA+RISRARWFSFLRRVF YQNGSRSD+ +NP
Sbjct: 24  LSPAGEDRMAAGVRNRSSRAPPSSFLIRTAMRISRARWFSFLRRVFHYQNGSRSDLGANP 83

Query: 88  FNSKSW 71
           FNS +W
Sbjct: 84  FNSNTW 89


>ref|XP_002267586.2| PREDICTED: E3 ubiquitin-protein ligase At4g11680 [Vitis vinifera]
          Length = 312

 Score = 86.3 bits (212), Expect = 2e-15
 Identities = 38/52 (73%), Positives = 47/52 (90%)
 Frame = -3

Query: 226 NGTARSPPAVFLVRTAVRISRARWFSFLRRVFWYQNGSRSDVMSNPFNSKSW 71
           N ++R+PP+ FL+RTA+RISRARWFSFLRRVF YQNGSRSD+ +NPFNS +W
Sbjct: 7   NRSSRAPPSSFLIRTAMRISRARWFSFLRRVFHYQNGSRSDLGANPFNSSTW 58


>ref|XP_002298883.1| predicted protein [Populus trichocarpa] gi|222846141|gb|EEE83688.1|
           predicted protein [Populus trichocarpa]
          Length = 341

 Score = 80.9 bits (198), Expect = 1e-13
 Identities = 41/67 (61%), Positives = 50/67 (74%), Gaps = 5/67 (7%)
 Frame = -3

Query: 256 VMSHVGEDNN-----NGTARSPPAVFLVRTAVRISRARWFSFLRRVFWYQNGSRSDVMSN 92
           V S  GE++      N +AR+P +  LVRTA+RISRARWF+FLRRVF YQNGSRS++ SN
Sbjct: 18  VASPAGEEHGTVSLRNRSARTPTSSLLVRTAMRISRARWFTFLRRVFHYQNGSRSNLGSN 77

Query: 91  PFNSKSW 71
           PFNS  W
Sbjct: 78  PFNSSPW 84


>gb|ACU18237.1| unknown [Glycine max]
          Length = 365

 Score = 75.9 bits (185), Expect = 3e-12
 Identities = 36/52 (69%), Positives = 41/52 (78%)
 Frame = -3

Query: 226 NGTARSPPAVFLVRTAVRISRARWFSFLRRVFWYQNGSRSDVMSNPFNSKSW 71
           N   R  P  FLVR A+RISRARWF+FLRRVF YQNGSRS++ SNPFNS +W
Sbjct: 34  NRPPRVTPPSFLVRIAMRISRARWFTFLRRVFHYQNGSRSNLGSNPFNSSTW 85


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