BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Dioscorea21_contig00036749
         (379 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002865693.1| pentatricopeptide repeat-containing protein ...   127   7e-28
ref|NP_199702.1| pentatricopeptide repeat-containing protein [Ar...   125   3e-27
ref|XP_002320601.1| predicted protein [Populus trichocarpa] gi|2...   123   1e-26
ref|XP_004139718.1| PREDICTED: pentatricopeptide repeat-containi...   123   2e-26
ref|XP_002521133.1| pentatricopeptide repeat-containing protein,...   121   5e-26

>ref|XP_002865693.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata] gi|297311528|gb|EFH41952.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           lyrata subsp. lyrata]
          Length = 640

 Score =  127 bits (320), Expect = 7e-28
 Identities = 63/133 (47%), Positives = 86/133 (64%), Gaps = 9/133 (6%)
 Frame = +2

Query: 5   FLKMLNDESVQPNRYTLPSVLKSCARSGALEEGKQIHGFVAKIGLQTDDFVLSNLVRMYA 184
           F +M++DE ++PNR+T PSVLK+CA++G +++GKQIHG   K G   D+FV+SNLVRMY 
Sbjct: 108 FCEMMSDEFIEPNRFTFPSVLKACAKTGKIQQGKQIHGLALKYGFGGDEFVMSNLVRMYV 167

Query: 185 MCGRMEDACFL---------VKXXXXXXXXXXXXXLHNVLIEGFFGLGMAAHARRIFDEM 337
           +CG M+DAC L         +              L NV+I+G+  LG    AR +FD+M
Sbjct: 168 ICGLMKDACVLFYKNIIEREMVMMIDRRKRDGEVVLWNVMIDGYMRLGDCKAARMLFDKM 227

Query: 338 PQRSVISWNAMIS 376
            QRSV+SWN MIS
Sbjct: 228 RQRSVVSWNTMIS 240



 Score = 57.0 bits (136), Expect = 2e-06
 Identities = 35/124 (28%), Positives = 58/124 (46%)
 Frame = +2

Query: 5   FLKMLNDESVQPNRYTLPSVLKSCARSGALEEGKQIHGFVAKIGLQTDDFVLSNLVRMYA 184
           F +M   E ++PN  TL SVL + +R G+LE G+ +H +    G++ DD + S L+ MY+
Sbjct: 255 FREMKKGEDIRPNYVTLVSVLPAVSRLGSLELGEWLHLYAEDSGIRIDDVLGSALIDMYS 314

Query: 185 MCGRMEDACFLVKXXXXXXXXXXXXXLHNVLIEGFFGLGMAAHARRIFDEMPQRSVISWN 364
            CG +E A                                      +F+ +P+ +VI+W+
Sbjct: 315 KCGIIEKAIM------------------------------------VFERLPRENVITWS 338

Query: 365 AMIS 376
           AMI+
Sbjct: 339 AMIN 342


>ref|NP_199702.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|75170778|sp|Q9FI80.1|PP425_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At5g48910 gi|10177180|dbj|BAB10314.1| selenium-binding
           protein-like [Arabidopsis thaliana]
           gi|15810559|gb|AAL07167.1| putative selenium-binding
           protein [Arabidopsis thaliana]
           gi|332008359|gb|AED95742.1| pentatricopeptide
           repeat-containing protein [Arabidopsis thaliana]
          Length = 646

 Score =  125 bits (315), Expect = 3e-27
 Identities = 65/133 (48%), Positives = 85/133 (63%), Gaps = 9/133 (6%)
 Frame = +2

Query: 5   FLKMLNDESVQPNRYTLPSVLKSCARSGALEEGKQIHGFVAKIGLQTDDFVLSNLVRMYA 184
           F +M++DE V+PNR+T PSVLK+CA++G ++EGKQIHG   K G   D+FV+SNLVRMY 
Sbjct: 115 FYEMMSDEFVEPNRFTFPSVLKACAKTGKIQEGKQIHGLALKYGFGGDEFVMSNLVRMYV 174

Query: 185 MCGRMEDACFL---------VKXXXXXXXXXXXXXLHNVLIEGFFGLGMAAHARRIFDEM 337
           MCG M+DA  L         +              L NV+I+G+  LG    AR +FD+M
Sbjct: 175 MCGFMKDARVLFYKNIIEKDMVVMTDRRKRDGEIVLWNVMIDGYMRLGDCKAARMLFDKM 234

Query: 338 PQRSVISWNAMIS 376
            QRSV+SWN MIS
Sbjct: 235 RQRSVVSWNTMIS 247


>ref|XP_002320601.1| predicted protein [Populus trichocarpa] gi|222861374|gb|EEE98916.1|
           predicted protein [Populus trichocarpa]
          Length = 629

 Score =  123 bits (309), Expect = 1e-26
 Identities = 61/125 (48%), Positives = 82/125 (65%)
 Frame = +2

Query: 2   WFLKMLNDESVQPNRYTLPSVLKSCARSGALEEGKQIHGFVAKIGLQTDDFVLSNLVRMY 181
           +F  ML D  V+PN++T P VLK+CA+   +EEGKQ+HGFV K+GL +D+FV SNLVR+Y
Sbjct: 109 YFSHMLTDGLVEPNKFTFPCVLKACAKLARIEEGKQLHGFVVKLGLVSDEFVRSNLVRVY 168

Query: 182 AMCGRMEDACFLVKXXXXXXXXXXXXXLHNVLIEGFFGLGMAAHARRIFDEMPQRSVISW 361
            MCG M+DA  L               L NV+I+G+  +G    +R +FD MP +SV+SW
Sbjct: 169 VMCGAMKDAHVL----FYQTRLEGNVVLWNVMIDGYVRMGDLRASRELFDSMPNKSVVSW 224

Query: 362 NAMIS 376
           N MIS
Sbjct: 225 NVMIS 229


>ref|XP_004139718.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 642

 Score =  123 bits (308), Expect = 2e-26
 Identities = 66/135 (48%), Positives = 80/135 (59%), Gaps = 11/135 (8%)
 Frame = +2

Query: 5   FLKMLNDESVQPNRYTLPSVLKSCARSGALEEGKQIHGFVAKIGLQTDDFVLSNLVRMYA 184
           F  ML D  V+PNR+T PSVLK+CAR+  L EGKQIHG + K G   D+FV+SNLVRMY 
Sbjct: 109 FSAMLCDGRVKPNRFTFPSVLKACARASRLREGKQIHGLIVKFGFHEDEFVISNLVRMYV 168

Query: 185 MCGRMEDACFL-----------VKXXXXXXXXXXXXXLHNVLIEGFFGLGMAAHARRIFD 331
           MC  MEDA  L            +             L N++I+G   LG    A+ +FD
Sbjct: 169 MCAVMEDAYSLFCKNVVDFDGSCQMELDKRKQDGNVVLWNIMIDGQVRLGDIKSAKNLFD 228

Query: 332 EMPQRSVISWNAMIS 376
           EMPQRSV+SWN MIS
Sbjct: 229 EMPQRSVVSWNVMIS 243



 Score = 57.0 bits (136), Expect = 2e-06
 Identities = 35/119 (29%), Positives = 56/119 (47%)
 Frame = +2

Query: 17  LNDESVQPNRYTLPSVLKSCARSGALEEGKQIHGFVAKIGLQTDDFVLSNLVRMYAMCGR 196
           +   ++ PN  TL SVL + AR GALE GK IH +  K  ++ DD + S LV MY+ CG 
Sbjct: 261 MQSSNIDPNYVTLVSVLPAIARIGALELGKWIHLYAGKNKIEIDDVLGSALVDMYSKCGS 320

Query: 197 MEDACFLVKXXXXXXXXXXXXXLHNVLIEGFFGLGMAAHARRIFDEMPQRSVISWNAMI 373
           +++A                                     ++F+ +P+R+ I+W+A+I
Sbjct: 321 IDEAL------------------------------------QVFETLPKRNAITWSAII 343


>ref|XP_002521133.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223539702|gb|EEF41284.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 274

 Score =  121 bits (304), Expect = 5e-26
 Identities = 64/132 (48%), Positives = 81/132 (61%), Gaps = 11/132 (8%)
 Frame = +2

Query: 14  MLNDESVQPNRYTLPSVLKSCARSGALEEGKQIHGFVAKIGLQTDDFVLSNLVRMYAMCG 193
           M  D  V+PNR+T PSVLK+CA++  L+EGKQ+HG+V K+ L  D+FV SNLVRMY MCG
Sbjct: 1   MCTDGVVEPNRFTFPSVLKACAKTARLQEGKQVHGYVIKLRLDNDEFVASNLVRMYVMCG 60

Query: 194 RMEDACFLV-----------KXXXXXXXXXXXXXLHNVLIEGFFGLGMAAHARRIFDEMP 340
            MEDA  L            K             L NV+I+G+  LG  A +R +FD MP
Sbjct: 61  VMEDARVLFRKHVFEYDICSKSTSDKRKREGIVVLWNVMIDGYVRLGDLAVSRDLFDNMP 120

Query: 341 QRSVISWNAMIS 376
            R+V+SWN MIS
Sbjct: 121 YRTVVSWNVMIS 132