BLASTX nr result
ID: Dioscorea21_contig00036623
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dioscorea21_contig00036623
(319 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002510620.1| pentatricopeptide repeat-containing protein,... 115 4e-24
ref|XP_002284799.1| PREDICTED: pentatricopeptide repeat-containi... 110 1e-22
tpg|DAA58782.1| TPA: putative pentatricopeptide repeat family pr... 108 5e-22
ref|XP_004142988.1| PREDICTED: LOW QUALITY PROTEIN: pentatricope... 107 1e-21
emb|CAN69119.1| hypothetical protein VITISV_031846 [Vitis vinifera] 107 1e-21
>ref|XP_002510620.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis] gi|223551321|gb|EEF52807.1| pentatricopeptide
repeat-containing protein, putative [Ricinus communis]
Length = 708
Score = 115 bits (288), Expect = 4e-24
Identities = 62/105 (59%), Positives = 77/105 (73%)
Frame = -2
Query: 315 EAFQLF*LMLTREESQVNKFVLTSVLSASCLPEFLDKGRQVHGLVIKNGLASFVPVWNAL 136
EAF++F LM REE VN+F TSVLSA +PEF+D G+Q+H L +K GL F+ + NAL
Sbjct: 195 EAFEVFELM-RREEEDVNEFAFTSVLSALAVPEFVDSGKQIHCLAVKTGLLVFLSILNAL 253
Query: 135 VTVYAKCECMDDSFSVFDETSGDAGKKNSITWSAVITGYSQNGHS 1
VT+YAKC +DDS VF E S D KNSITWSA+ITGY+Q+G S
Sbjct: 254 VTMYAKCGSLDDSLQVF-EMSND---KNSITWSAMITGYAQSGDS 294
Score = 60.1 bits (144), Expect = 2e-07
Identities = 33/87 (37%), Positives = 51/87 (58%)
Frame = -2
Query: 264 NKFVLTSVLSASCLPEFLDKGRQVHGLVIKNGLASFVPVWNALVTVYAKCECMDDSFSVF 85
N+ + SVL A D+GRQ+H IK GL V + +AL T+YAKC +++ VF
Sbjct: 413 NELTMASVLKACSNLAAFDQGRQIHARTIKYGLGLEVTIGSALSTMYAKCGNLEEGNIVF 472
Query: 84 DETSGDAGKKNSITWSAVITGYSQNGH 4
+++ I+W+A+I+G SQNG+
Sbjct: 473 RRMP----ERDIISWNAMISGLSQNGY 495
>ref|XP_002284799.1| PREDICTED: pentatricopeptide repeat-containing protein At2g33680
[Vitis vinifera] gi|302141693|emb|CBI18896.3| unnamed
protein product [Vitis vinifera]
Length = 703
Score = 110 bits (275), Expect = 1e-22
Identities = 62/105 (59%), Positives = 75/105 (71%)
Frame = -2
Query: 315 EAFQLF*LMLTREESQVNKFVLTSVLSASCLPEFLDKGRQVHGLVIKNGLASFVPVWNAL 136
EA LF LM REE N+FV TSVLSA LPE ++ G+Q+H + +KNGL S V V NAL
Sbjct: 192 EALGLFRLM-RREEEGENEFVFTSVLSALTLPELVNNGKQIHCIAVKNGLLSIVSVGNAL 250
Query: 135 VTVYAKCECMDDSFSVFDETSGDAGKKNSITWSAVITGYSQNGHS 1
VT+YAKC +DD+ F ETS D KNSITWSA+ITGY+Q+G S
Sbjct: 251 VTMYAKCGSLDDALQTF-ETSSD---KNSITWSAMITGYAQSGDS 291
Score = 64.7 bits (156), Expect = 8e-09
Identities = 33/86 (38%), Positives = 50/86 (58%)
Frame = -2
Query: 264 NKFVLTSVLSASCLPEFLDKGRQVHGLVIKNGLASFVPVWNALVTVYAKCECMDDSFSVF 85
N+ + SVL A L++G+Q+H +K G VP+ +AL T+YAKC C+ D VF
Sbjct: 410 NELTMASVLKACSSLAALEQGKQIHARTVKYGFGLEVPIGSALSTMYAKCGCLKDGTLVF 469
Query: 84 DETSGDAGKKNSITWSAVITGYSQNG 7
++ I+W+A+I+G SQNG
Sbjct: 470 RRMPA----RDVISWNAMISGLSQNG 491
>tpg|DAA58782.1| TPA: putative pentatricopeptide repeat family protein [Zea mays]
Length = 736
Score = 108 bits (270), Expect = 5e-22
Identities = 58/105 (55%), Positives = 76/105 (72%)
Frame = -2
Query: 315 EAFQLF*LMLTREESQVNKFVLTSVLSASCLPEFLDKGRQVHGLVIKNGLASFVPVWNAL 136
EAF+LF LML + + N+FV T+VLSA +P L G Q+HGLV+K+GL FV V N+L
Sbjct: 207 EAFELFRLMLQKCPLEKNEFVTTAVLSAVSVPLGLLMGTQLHGLVLKDGLVGFVSVENSL 266
Query: 135 VTVYAKCECMDDSFSVFDETSGDAGKKNSITWSAVITGYSQNGHS 1
VT+YAK ECMD + VF G + ++NSITWSA+ITGY+QNG +
Sbjct: 267 VTMYAKAECMDAAMRVF----GSSKERNSITWSAMITGYAQNGEA 307
>ref|XP_004142988.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At2g33680-like [Cucumis sativus]
Length = 692
Score = 107 bits (267), Expect = 1e-21
Identities = 57/105 (54%), Positives = 75/105 (71%)
Frame = -2
Query: 315 EAFQLF*LMLTREESQVNKFVLTSVLSASCLPEFLDKGRQVHGLVIKNGLASFVPVWNAL 136
EA++LF L++ REE +KF+ TSVLSA +P+ + G+Q+H L +KNGL S V NAL
Sbjct: 197 EAWELF-LLMRREEGAHDKFIYTSVLSALTVPDLVHYGKQIHCLALKNGLLSIASVGNAL 255
Query: 135 VTVYAKCECMDDSFSVFDETSGDAGKKNSITWSAVITGYSQNGHS 1
VT+Y KC C+DD+F F E SGD K+ ITWSA+ITGY+Q G S
Sbjct: 256 VTMYGKCGCLDDAFKTF-ELSGD---KDDITWSAMITGYAQAGDS 296
Score = 60.8 bits (146), Expect = 1e-07
Identities = 33/91 (36%), Positives = 52/91 (57%)
Frame = -2
Query: 279 EESQVNKFVLTSVLSASCLPEFLDKGRQVHGLVIKNGLASFVPVWNALVTVYAKCECMDD 100
E ++ + SVL A L++G+Q+H IK G + VP+ +AL T+YAKC ++D
Sbjct: 392 ERIMPHELTMASVLRACSSLAALEQGKQIHAQTIKYGFSLEVPIGSALSTMYAKCGSLED 451
Query: 99 SFSVFDETSGDAGKKNSITWSAVITGYSQNG 7
VF ++ +TW+A+I+G SQNG
Sbjct: 452 GNLVFRRMP----SRDIMTWNAMISGLSQNG 478
>emb|CAN69119.1| hypothetical protein VITISV_031846 [Vitis vinifera]
Length = 654
Score = 107 bits (267), Expect = 1e-21
Identities = 61/105 (58%), Positives = 74/105 (70%)
Frame = -2
Query: 315 EAFQLF*LMLTREESQVNKFVLTSVLSASCLPEFLDKGRQVHGLVIKNGLASFVPVWNAL 136
EA LF LM REE N+FV TSVLSA LPE ++ G+Q+H + +KNGL S V V NAL
Sbjct: 192 EALGLFRLM-RREEEGENEFVFTSVLSALTLPELVNNGKQIHCIAVKNGLLSIVSVGNAL 250
Query: 135 VTVYAKCECMDDSFSVFDETSGDAGKKNSITWSAVITGYSQNGHS 1
VT+YAKC +DD+ F ETS D KNSITWSA+ITG +Q+G S
Sbjct: 251 VTMYAKCGSLDDALQTF-ETSSD---KNSITWSAMITGXAQSGDS 291
Score = 64.7 bits (156), Expect = 8e-09
Identities = 33/86 (38%), Positives = 50/86 (58%)
Frame = -2
Query: 264 NKFVLTSVLSASCLPEFLDKGRQVHGLVIKNGLASFVPVWNALVTVYAKCECMDDSFSVF 85
N+ + SVL A L++G+Q+H +K G VP+ +AL T+YAKC C+ D VF
Sbjct: 410 NELTMASVLKACSSLAALEQGKQIHARTVKYGFGLEVPIGSALSTMYAKCGCLKDGTLVF 469
Query: 84 DETSGDAGKKNSITWSAVITGYSQNG 7
++ I+W+A+I+G SQNG
Sbjct: 470 RRMPA----RDVISWNAMISGLSQNG 491