BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Dioscorea21_contig00035469
         (806 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AFP55574.1| non-ltr retroelement reverse transcriptase [Rosa ...   107   9e-23
ref|XP_002331338.1| predicted protein [Populus trichocarpa] gi|2...   106   1e-22
gb|ABD28627.2| RNA-directed DNA polymerase (Reverse transcriptas...   102   5e-22
gb|AAM01128.1|AC108884_10 putative non-LTR retroelement reverse ...   108   1e-21
emb|CCA66036.1| hypothetical protein [Beta vulgaris subsp. vulga...   101   3e-21

>gb|AFP55574.1| non-ltr retroelement reverse transcriptase [Rosa rugosa]
          Length = 1656

 Score =  107 bits (266), Expect(2) = 9e-23
 Identities = 65/205 (31%), Positives = 102/205 (49%)
 Frame = +1

Query: 178  FNNFINSSRLIDLGFSGPRFTWCNGQDGLARRWARLDRFLANINWINLFTQIDNTHLPRS 357
            F +F+N+  L DL F GP F+W   + G      RLDR L NI W +        HLP+ 
Sbjct: 766  FRDFLNNGHLRDLHFKGPGFSWFAMRHGRVFIKERLDRALGNIAWSSSQPNTQILHLPKI 825

Query: 358  NSDHSPMLLSACVGLPPKNRPFRFDNIWLDYNACHDNILQAFNSNSHSSPMHAFHHYIFR 537
             SDH P+LL +   +  K R FRF+ +W  +    D I +++      S M +++  +  
Sbjct: 826  GSDHRPLLLDSNPKMLNKTRLFRFEQMWTTHEEYSDVIQRSWPPAFGGSAMRSWNRNLLS 885

Query: 538  AKQNLISWKVSGTRPIDKELRDLEAEIKEVELKETLYSDPWHPLWLRSLRNRYAALLRQN 717
              + L  W          ++ DL ++I+  +L ++   D  H   +  L ++   L  Q+
Sbjct: 886  CGKALKMWSKEKFSNPSVQVADLLSDIE--KLHQSNPPDAHHQ--INILTDQVTKLWTQD 941

Query: 718  SIYWQQRARMQWLNHGDFNSSFFHK 792
             +YW QR+R+ WL  GD NSSFFH+
Sbjct: 942  EMYWHQRSRVNWLKLGDQNSSFFHQ 966



 Score = 26.2 bits (56), Expect(2) = 9e-23
 Identities = 13/48 (27%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
 Frame = +2

Query: 2   LTVVYNSQSLLGQKHLWRSLSGLASIHK-PWLLTGDFNAILSDLDHKG 142
           +T +Y +     ++  WR +     +   PWL+ GDFN +L   +  G
Sbjct: 707 ITWMYGNPHDNEKRAFWRLMYSRFPVQSLPWLVLGDFNEVLDPSEKWG 754


>ref|XP_002331338.1| predicted protein [Populus trichocarpa] gi|222873371|gb|EEF10502.1|
            predicted protein [Populus trichocarpa]
          Length = 819

 Score =  106 bits (265), Expect(2) = 1e-22
 Identities = 63/205 (30%), Positives = 111/205 (54%), Gaps = 2/205 (0%)
 Frame = +1

Query: 190  INSSRLIDLGFSGPRFTWCNG-QDGLARRWARLDRFLANINWINLFTQIDNTHLPRSNSD 366
            I  +++ DL +SG  +TW N   + L  R  +LDR L N  W   F   +   LP   SD
Sbjct: 546  IREAKVDDLRYSGMHYTWSNQCPENLIMR--KLDRVLVNEKWNLKFPLSEARFLPSGMSD 603

Query: 367  HSPMLLSACVGLPPKNRPFRFDNIWLDYNACHDNILQAFNSNSHSSPMHAFHHYIFRAKQ 546
            HSPM++        K +PFRF ++W+D++     + + ++ NS   PM+     + + KQ
Sbjct: 604  HSPMVVKVIGNDQNKKKPFRFFDMWMDHDEFMPLVKKVWDQNSRGCPMYQLCCKLRKLKQ 663

Query: 547  NLISWKVSGTRPIDKELRDLEAEI-KEVELKETLYSDPWHPLWLRSLRNRYAALLRQNSI 723
             L  + ++    I   +RD + ++ K  +   T + +P   +  R + ++YA+ +R    
Sbjct: 664  ELKLFNMAHFSNISDRVRDAKNKMDKAQQALHTAHENPILCMRERDVVHKYASTVRAEES 723

Query: 724  YWQQRARMQWLNHGDFNSSFFHKAV 798
            +++Q+AR+QWL+ GD N+S+FHK+V
Sbjct: 724  FFKQKARIQWLSLGDQNTSYFHKSV 748



 Score = 26.6 bits (57), Expect(2) = 1e-22
 Identities = 13/48 (27%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
 Frame = +2

Query: 5   TVVYNSQSLLGQKHLWRSLSGLASIHKP--WLLTGDFNAILSDLDHKG 142
           +++Y   +   ++ LW  +   +   +   W+L GDFNAI +  D  G
Sbjct: 483 SIIYGDNNASLREALWSDIVSRSDGWESTLWILIGDFNAIRNQSDRLG 530


>gb|ABD28627.2| RNA-directed DNA polymerase (Reverse transcriptase); Ribonuclease H
           [Medicago truncatula]
          Length = 1296

 Score =  102 bits (254), Expect(2) = 5e-22
 Identities = 65/223 (29%), Positives = 116/223 (52%), Gaps = 2/223 (0%)
 Frame = +1

Query: 127 LRSQGRNSLSYNAKSLYFNNFINSSRLIDLGFSGPRFTWCNGQDGLARRWARLDRFLANI 306
           L S+ R    ++ ++  F+NF+N+  L+DL  +G RFTW    +G+     +LDR +AN+
Sbjct: 143 LPSEQRGGTFHHNRAATFSNFMNNCNLLDLTTTGGRFTWHKNNNGIRILSKKLDRGMANV 202

Query: 307 NWINLFTQIDNTHLPRSNSDHSPMLLSACVGLPPKN--RPFRFDNIWLDYNACHDNILQA 480
           +W   F +     L R +SDH+P+LL    GLP     RPFRF+  W+D+    + + ++
Sbjct: 203 DWRLSFPEAFVEVLCRLHSDHNPLLL-RFGGLPLTRGPRPFRFEAAWIDHYDYGNVVKRS 261

Query: 481 FNSNSHSSPMHAFHHYIFRAKQNLISWKVSGTRPIDKELRDLEAEIKEVELKETLYSDPW 660
           +++++H+         + +  +N I +       I +    +E  +K V+          
Sbjct: 262 WSTHTHNPTAS-----LIKVMENSIIFNHDVFGNIFQRKSRVEWRLKGVQSYLERVDSYR 316

Query: 661 HPLWLRSLRNRYAALLRQNSIYWQQRARMQWLNHGDFNSSFFH 789
           H L  + L++ Y  +L Q  + W Q++R QW+  GD N++FFH
Sbjct: 317 HTLLEKELQDEYNHILFQEEMLWYQKSREQWVKLGDKNTAFFH 359



 Score = 28.5 bits (62), Expect(2) = 5e-22
 Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = +2

Query: 5   TVVYNSQSLLGQKHLWRSLSGLA-SIHKPWLLTGDFN 112
           T +Y S +   + +LW  L  +  +I  PW+L GDFN
Sbjct: 103 TCIYASPNYSMRPNLWNYLVNINDTITGPWMLIGDFN 139


>gb|AAM01128.1|AC108884_10 putative non-LTR retroelement reverse transcriptase [Oryza sativa
            Japonica Group]
          Length = 1228

 Score =  108 bits (270), Expect = 1e-21
 Identities = 63/221 (28%), Positives = 116/221 (52%), Gaps = 4/221 (1%)
 Frame = +1

Query: 142  RNSLSYNAKSL-YFNNFINSSRLIDLGFSGPRFTWCNGQDGLARRWARLDRFLANINWIN 318
            +++ + N++++  FN+FI +  L ++  SGP+FTW N QD L +    LDR L   +W +
Sbjct: 668  KSNTNTNSRNMDMFNSFIANLDLREIYRSGPKFTWTNKQDSLVQEV--LDRILVTTDWDD 725

Query: 319  LFTQIDNTHLPRSNSDHSPMLLSACVGLPPKNRPFRFDNIWLDYNACHDNILQAFNSNSH 498
            ++     + + R  SDH P+LL  C G+  K++ F+F++ WL   +  + ++Q      +
Sbjct: 726  MYPTALLSSILRVGSDHIPLLLDTCEGIIVKSKYFKFESAWLAEESFKELVIQRLLPRDN 785

Query: 499  SSPMHAFHHYIFRAKQNLISWKVSGTRPIDKELRDLEAEIKEVE---LKETLYSDPWHPL 669
            S  +  ++      ++ L+ W  +      +E R L+ +I+E++   L E L SD W+  
Sbjct: 786  SYILEFWNKKQSSLRRFLVGWGKNNRSKKLREKRTLQCKIEELDKKALTEELTSDEWNQR 845

Query: 670  WLRSLRNRYAALLRQNSIYWQQRARMQWLNHGDFNSSFFHK 792
            +  S  N    +     +YW +R   QW+  GD N+ FFH+
Sbjct: 846  Y--SWENDLEHIYEMEELYWHKRCGEQWILEGDRNTEFFHR 884


>emb|CCA66036.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
          Length = 1369

 Score =  101 bits (251), Expect(2) = 3e-21
 Identities = 63/210 (30%), Positives = 99/210 (47%), Gaps = 5/210 (2%)
 Frame = +1

Query: 178 FNNFINSSRLIDLGFSGPRFTWCNGQDGLARRWARLDRFLANINWINLFTQIDNTHLPRS 357
           F N +     +DLGF G  FTW N + G A    RLDRF+AN  W   F     +HLP+ 
Sbjct: 166 FRNAMEECHFMDLGFVGYEFTWTNNRGGDANIQERLDRFVANDLWKIKFPGSFVSHLPKR 225

Query: 358 NSDHSPMLLS-----ACVGLPPKNRPFRFDNIWLDYNACHDNILQAFNSNSHSSPMHAFH 522
            SDH P++ S     +      K++ FRF+ +WL      + + + +   + +    A  
Sbjct: 226 KSDHVPIVASVKGAQSAATRTKKSKRFRFEAMWLREGESDEVVKETWMRGTDAGINLA-- 283

Query: 523 HYIFRAKQNLISWKVSGTRPIDKELRDLEAEIKEVELKETLYSDPWHPLWLRSLRNRYAA 702
               R    L+SW       + KE+R  + ++K +   E    +  H   +R+L  R   
Sbjct: 284 ----RTANKLLSWSKQKFGHVAKEIRMCQHQMKVLMESEPSEDNIMH---MRALDARMDE 336

Query: 703 LLRQNSIYWQQRARMQWLNHGDFNSSFFHK 792
           L ++  +YW QR+R  W+  GD N+ FFH+
Sbjct: 337 LEKREEVYWHQRSRQDWIKSGDKNTKFFHQ 366



 Score = 26.9 bits (58), Expect(2) = 3e-21
 Identities = 14/29 (48%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
 Frame = +2

Query: 59  LSGLA-SIHKPWLLTGDFNAILSDLDHKG 142
           LS LA +  +PWL  GDFN +L   + KG
Sbjct: 126 LSALARASRRPWLCGGDFNLMLVASEKKG 154