BLASTX nr result

ID: Dioscorea21_contig00035172 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Dioscorea21_contig00035172
         (324 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI36035.3| unnamed protein product [Vitis vinifera]               75   4e-12
ref|XP_002277638.1| PREDICTED: DNA repair protein RadA homolog [...    75   4e-12
ref|NP_001056828.1| Os06g0151600 [Oryza sativa Japonica Group] g...    75   7e-12
ref|XP_002436490.1| hypothetical protein SORBIDRAFT_10g003620 [S...    75   7e-12
gb|EAZ35849.1| hypothetical protein OsJ_20147 [Oryza sativa Japo...    75   7e-12

>emb|CBI36035.3| unnamed protein product [Vitis vinifera]
          Length = 583

 Score = 75.5 bits (184), Expect = 4e-12
 Identities = 37/50 (74%), Positives = 45/50 (90%), Gaps = 1/50 (2%)
 Frame = -2

Query: 323 IDKRVMSVAKLGYKKCIVPKAVEKSLADL-NLDIEIVGCRNLKEVINTIF 177
           ++KRV +VAKLGYKKCIVPKA EKSL  L +++IEIVGCRN+KEVINT+F
Sbjct: 533 MEKRVNTVAKLGYKKCIVPKAAEKSLPTLEDMNIEIVGCRNMKEVINTVF 582


>ref|XP_002277638.1| PREDICTED: DNA repair protein RadA homolog [Vitis vinifera]
          Length = 624

 Score = 75.5 bits (184), Expect = 4e-12
 Identities = 37/50 (74%), Positives = 45/50 (90%), Gaps = 1/50 (2%)
 Frame = -2

Query: 323 IDKRVMSVAKLGYKKCIVPKAVEKSLADL-NLDIEIVGCRNLKEVINTIF 177
           ++KRV +VAKLGYKKCIVPKA EKSL  L +++IEIVGCRN+KEVINT+F
Sbjct: 574 MEKRVNTVAKLGYKKCIVPKAAEKSLPTLEDMNIEIVGCRNMKEVINTVF 623


>ref|NP_001056828.1| Os06g0151600 [Oryza sativa Japonica Group]
           gi|53791424|dbj|BAD13707.2| RadA-like protein [Oryza
           sativa Japonica Group] gi|55296625|dbj|BAD69327.1|
           putative RadA [Oryza sativa Japonica Group]
           gi|55297278|dbj|BAD69063.1| putative RadA [Oryza sativa
           Japonica Group] gi|113594868|dbj|BAF18742.1|
           Os06g0151600 [Oryza sativa Japonica Group]
           gi|215736826|dbj|BAG95755.1| unnamed protein product
           [Oryza sativa Japonica Group]
          Length = 619

 Score = 74.7 bits (182), Expect = 7e-12
 Identities = 33/50 (66%), Positives = 43/50 (86%)
 Frame = -2

Query: 323 IDKRVMSVAKLGYKKCIVPKAVEKSLADLNLDIEIVGCRNLKEVINTIFQ 174
           +DKRV+++AKLGYKKC+VPK  EK L  LNL++EI+ C NLKEVINT+F+
Sbjct: 567 MDKRVLAIAKLGYKKCVVPKTSEKLLRPLNLELEILPCSNLKEVINTVFR 616


>ref|XP_002436490.1| hypothetical protein SORBIDRAFT_10g003620 [Sorghum bicolor]
           gi|241914713|gb|EER87857.1| hypothetical protein
           SORBIDRAFT_10g003620 [Sorghum bicolor]
          Length = 673

 Score = 74.7 bits (182), Expect = 7e-12
 Identities = 34/49 (69%), Positives = 42/49 (85%)
 Frame = -2

Query: 323 IDKRVMSVAKLGYKKCIVPKAVEKSLADLNLDIEIVGCRNLKEVINTIF 177
           +DKRVM++AKLGYKKC+VPK  EK L  L+LDIEI+ C NLK+VINT+F
Sbjct: 621 MDKRVMAIAKLGYKKCVVPKTSEKLLRPLDLDIEILPCSNLKQVINTVF 669


>gb|EAZ35849.1| hypothetical protein OsJ_20147 [Oryza sativa Japonica Group]
          Length = 625

 Score = 74.7 bits (182), Expect = 7e-12
 Identities = 33/50 (66%), Positives = 43/50 (86%)
 Frame = -2

Query: 323 IDKRVMSVAKLGYKKCIVPKAVEKSLADLNLDIEIVGCRNLKEVINTIFQ 174
           +DKRV+++AKLGYKKC+VPK  EK L  LNL++EI+ C NLKEVINT+F+
Sbjct: 573 MDKRVLAIAKLGYKKCVVPKTSEKLLRPLNLELEILPCSNLKEVINTVFR 622


Top