BLASTX nr result
ID: Dioscorea21_contig00033928
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dioscorea21_contig00033928
(576 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAB64529.1| TdcA1-ORF2 [Daucus carota] 120 1e-43
gb|ABG37655.1| integrase [Populus trichocarpa] 92 3e-42
gb|ABM55245.1| transposon-like protein [Beta vulgaris] 108 9e-40
ref|XP_003605924.1| TdcA1-ORF2 protein [Medicago truncatula] gi|... 103 3e-39
dbj|BAB64937.1| TdcA1-ORF1-ORF2 [Daucus carota] 120 6e-37
>dbj|BAB64529.1| TdcA1-ORF2 [Daucus carota]
Length = 812
Score = 120 bits (302), Expect(3) = 1e-43
Identities = 51/84 (60%), Positives = 66/84 (78%)
Frame = -1
Query: 252 SSRNIPKTVYTLTKEQKRVICGWIQELRFPDGYASNIGRCVDMNELEMTAMKSHDCHVFM 73
S+R PK Y+L K+ K +C W+Q+L+FPDGY SN+GRC+DM + ++ MKSHDCHVFM
Sbjct: 279 STRKYPKACYSLDKKGKEAVCKWLQDLKFPDGYVSNMGRCIDMKKYKLFGMKSHDCHVFM 338
Query: 72 QRLIPIAFRELLPSFVWNPLTELS 1
QRL+PIAFRE LP+ VW +TELS
Sbjct: 339 QRLMPIAFREFLPNNVWEAVTELS 362
Score = 52.0 bits (123), Expect(3) = 1e-43
Identities = 22/29 (75%), Positives = 24/29 (82%)
Frame = -2
Query: 464 WTKKSIFWDLPY*KNNLIRHNLDVMHIEK 378
W K+SIFWDLPY + IRHNLDVMHIEK
Sbjct: 210 WKKRSIFWDLPYWRTLSIRHNLDVMHIEK 238
Score = 50.1 bits (118), Expect(3) = 1e-43
Identities = 20/37 (54%), Positives = 29/37 (78%)
Frame = -3
Query: 382 KKNVFDNVFFTVMDVKGKSKDNINARKDVGILCDRKE 272
+KNVF+N+F T+M ++GK+KDN AR D+ +LC R E
Sbjct: 237 EKNVFENIFNTIMAIEGKTKDNAKARADIALLCRRPE 273
>gb|ABG37655.1| integrase [Populus trichocarpa]
Length = 1263
Score = 92.4 bits (228), Expect(3) = 3e-42
Identities = 40/79 (50%), Positives = 57/79 (72%)
Frame = -1
Query: 237 PKTVYTLTKEQKRVICGWIQELRFPDGYASNIGRCVDMNELEMTAMKSHDCHVFMQRLIP 58
P+ + L K + ++ W++ LRF DG+ASNI R V++ + + MKSHDCHVFMQ LIP
Sbjct: 230 PRASFVLEKNAQLLLYKWLKSLRFLDGHASNISRLVNIEDCRLYGMKSHDCHVFMQTLIP 289
Query: 57 IAFRELLPSFVWNPLTELS 1
+AFR+LLP +W+ LTE+S
Sbjct: 290 LAFRDLLPKGIWDALTEIS 308
Score = 70.5 bits (171), Expect(3) = 3e-42
Identities = 34/65 (52%), Positives = 43/65 (66%), Gaps = 3/65 (4%)
Frame = -2
Query: 563 RLSGEEIFNQVMLFPT---AMEDPVNKPPGYGATHKWTKKSIFWDLPY*KNNLIRHNLDV 393
RLSGEE+ + V + ++ K PG+G TH W K+SI W+LPY K NL+ HNLDV
Sbjct: 118 RLSGEELHDVVSEYGDIVFGLQSGKQKFPGFGLTHNWVKRSIVWELPYWKTNLLCHNLDV 177
Query: 392 MHIEK 378
MHIEK
Sbjct: 178 MHIEK 182
Score = 55.5 bits (132), Expect(3) = 3e-42
Identities = 23/36 (63%), Positives = 31/36 (86%)
Frame = -3
Query: 382 KKNVFDNVFFTVMDVKGKSKDNINARKDVGILCDRK 275
+KN+F+N+F TVMDVKGK+KDNI AR D+ + C+RK
Sbjct: 181 EKNMFENIFNTVMDVKGKTKDNIKARLDIALYCNRK 216
>gb|ABM55245.1| transposon-like protein [Beta vulgaris]
Length = 1399
Score = 108 bits (270), Expect(3) = 9e-40
Identities = 43/79 (54%), Positives = 61/79 (77%)
Frame = -1
Query: 237 PKTVYTLTKEQKRVICGWIQELRFPDGYASNIGRCVDMNELEMTAMKSHDCHVFMQRLIP 58
PK YTL K QK+V C W+++L+FPD +ASN+ RCVD++ ++ +KSHDCHVFM+RL+P
Sbjct: 497 PKAPYTLDKAQKKVFCEWVRDLKFPDDFASNLSRCVDLSSSKLQGLKSHDCHVFMERLLP 556
Query: 57 IAFRELLPSFVWNPLTELS 1
+ +ELLP VW +TE+S
Sbjct: 557 VGLKELLPLHVWKAITEIS 575
Score = 57.8 bits (138), Expect(3) = 9e-40
Identities = 29/72 (40%), Positives = 41/72 (56%)
Frame = -2
Query: 572 SPQRLSGEEIFNQVMLFPTAMEDPVNKPPGYGATHKWTKKSIFWDLPY*KNNLIRHNLDV 393
+P +SGEE++ V P A + P W K++I W+LPY K+ +IRHNLDV
Sbjct: 384 APHIMSGEELWQCVKDLPKATDGPEALNRLKKDKKGWLKQNILWELPYWKDLIIRHNLDV 443
Query: 392 MHIEKKCLRQCV 357
MH+EK Q +
Sbjct: 444 MHVEKNFFDQLI 455
Score = 43.5 bits (101), Expect(3) = 9e-40
Identities = 19/37 (51%), Positives = 27/37 (72%)
Frame = -3
Query: 382 KKNVFDNVFFTVMDVKGKSKDNINARKDVGILCDRKE 272
+KN FD + TVMDVKG++ D ++ARKD+ +C R E
Sbjct: 447 EKNFFDQLINTVMDVKGQTSDTLSARKDMTRVCKRHE 483
>ref|XP_003605924.1| TdcA1-ORF2 protein [Medicago truncatula]
gi|355506979|gb|AES88121.1| TdcA1-ORF2 protein [Medicago
truncatula]
Length = 1066
Score = 103 bits (257), Expect(3) = 3e-39
Identities = 48/78 (61%), Positives = 57/78 (73%)
Frame = -1
Query: 234 KTVYTLTKEQKRVICGWIQELRFPDGYASNIGRCVDMNELEMTAMKSHDCHVFMQRLIPI 55
K YT T EQKR IC W++ L+ PDGYASN+ RCVDM E ++ MKSHDCHVFM+RL+PI
Sbjct: 145 KANYTFTLEQKRAICEWVKCLKMPDGYASNLARCVDMKEGKLHGMKSHDCHVFMERLLPI 204
Query: 54 AFRELLPSFVWNPLTELS 1
AF LP W +TELS
Sbjct: 205 AFSS-LPDQTWKAITELS 221
Score = 57.4 bits (137), Expect(3) = 3e-39
Identities = 29/52 (55%), Positives = 37/52 (71%), Gaps = 5/52 (9%)
Frame = -3
Query: 382 KKNVFDNVFFTVMDVKGKSKDNINARKDVGILCDRK-----ERGSFKLFKSK 242
+KNVFDNVF TVMD+KGK+KDNI AR D+ + C RK E+ + + KSK
Sbjct: 94 EKNVFDNVFNTVMDIKGKTKDNIKARMDLKLYCKRKDLELLEQSNGRTIKSK 145
Score = 47.4 bits (111), Expect(3) = 3e-39
Identities = 20/24 (83%), Positives = 21/24 (87%)
Frame = -2
Query: 449 IFWDLPY*KNNLIRHNLDVMHIEK 378
IFW+LPY NLIRHNLDVMHIEK
Sbjct: 72 IFWELPYWSTNLIRHNLDVMHIEK 95
>dbj|BAB64937.1| TdcA1-ORF1-ORF2 [Daucus carota]
Length = 988
Score = 120 bits (302), Expect(3) = 6e-37
Identities = 51/84 (60%), Positives = 66/84 (78%)
Frame = -1
Query: 252 SSRNIPKTVYTLTKEQKRVICGWIQELRFPDGYASNIGRCVDMNELEMTAMKSHDCHVFM 73
S+R PK Y+L K+ K +C W+Q+L+FPDGY SN+GRC+DM + ++ MKSHDCHVFM
Sbjct: 55 STRKYPKACYSLDKKGKEAVCKWLQDLKFPDGYVSNMGRCIDMKKYKLFGMKSHDCHVFM 114
Query: 72 QRLIPIAFRELLPSFVWNPLTELS 1
QRL+PIAFRE LP+ VW +TELS
Sbjct: 115 QRLMPIAFREFLPNNVWEAVTELS 138
Score = 50.1 bits (118), Expect(3) = 6e-37
Identities = 20/37 (54%), Positives = 29/37 (78%)
Frame = -3
Query: 382 KKNVFDNVFFTVMDVKGKSKDNINARKDVGILCDRKE 272
+KNVF+N+F T+M ++GK+KDN AR D+ +LC R E
Sbjct: 13 EKNVFENIFNTIMAIEGKTKDNAKARADIALLCRRPE 49
Score = 29.3 bits (64), Expect(3) = 6e-37
Identities = 12/12 (100%), Positives = 12/12 (100%)
Frame = -2
Query: 413 IRHNLDVMHIEK 378
IRHNLDVMHIEK
Sbjct: 3 IRHNLDVMHIEK 14