BLASTX nr result
ID: Dioscorea21_contig00033587
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dioscorea21_contig00033587
(464 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002519416.1| polyadenylate-binding protein, putative [Ric... 115 9e-30
ref|XP_002264613.1| PREDICTED: probable polyadenylate-binding pr... 112 1e-28
emb|CAN74140.1| hypothetical protein VITISV_008914 [Vitis vinifera] 112 1e-28
ref|XP_003521427.1| PREDICTED: probable polyadenylate-binding pr... 111 2e-28
ref|XP_003537028.1| PREDICTED: probable polyadenylate-binding pr... 110 3e-28
>ref|XP_002519416.1| polyadenylate-binding protein, putative [Ricinus communis]
gi|223541279|gb|EEF42830.1| polyadenylate-binding
protein, putative [Ricinus communis]
Length = 632
Score = 115 bits (289), Expect(2) = 9e-30
Identities = 60/115 (52%), Positives = 83/115 (72%)
Frame = +3
Query: 117 KSEREALAMEFKCSNLYIKNLSSNITDELLQDRFSEFGAVNSAIVMNDSTGKSKGFGFVS 296
KS+R + + K +NLY+KNL IT+ELLQ++FSEFG + S + D G S+GFGFV+
Sbjct: 179 KSDRVLPSPDAKYTNLYVKNLDPGITEELLQEKFSEFGKIVSVAIARDECGSSRGFGFVN 238
Query: 297 FELPEHAKIAMEAMNGSKLGSGSKILYVIPAQKKAEREKILKLQFGKKLDQPLKK 461
FE P+ A+ AME MNG++L GSK+LYV AQK+AERE+IL+ QF +K + + K
Sbjct: 239 FENPDDARWAMERMNGTEL--GSKVLYVGRAQKRAEREQILRRQFEEKRKEQITK 291
Score = 39.3 bits (90), Expect(2) = 9e-30
Identities = 20/34 (58%), Positives = 25/34 (73%)
Frame = +1
Query: 4 EKGISKGFGFVQMESEEAALSAIKGLNGKDLKDE 105
E G SKG GFVQ ESE++A SAI+ LNG + D+
Sbjct: 136 EDGKSKGHGFVQFESEDSANSAIEKLNGSIVGDK 169
Score = 85.5 bits (210), Expect(2) = 2e-18
Identities = 44/112 (39%), Positives = 70/112 (62%)
Frame = +3
Query: 108 QETKSEREALAMEFKCSNLYIKNLSSNITDELLQDRFSEFGAVNSAIVMNDSTGKSKGFG 287
++ + +R+ +FK SN+Y+KN+ ++TDE L++ FS+ G + SA +M D G+SKGFG
Sbjct: 279 RQFEEKRKEQITKFKGSNVYVKNIDDDVTDEELREHFSQCGTITSAKLMKDDKGRSKGFG 338
Query: 288 FVSFELPEHAKIAMEAMNGSKLGSGSKILYVIPAQKKAEREKILKLQFGKKL 443
FV F E A A+ +G K LYV AQ+K ER+ L+LQ+ +++
Sbjct: 339 FVCFSSSEEASKAVNTFHGYMF--HRKPLYVAIAQRKEERQAQLQLQYAQRI 388
Score = 32.0 bits (71), Expect(2) = 2e-18
Identities = 14/36 (38%), Positives = 24/36 (66%)
Frame = +1
Query: 1 EEKGISKGFGFVQMESEEAALSAIKGLNGKDLKDEI 108
+E G S+GFGFV E+ + A A++ +NG +L ++
Sbjct: 226 DECGSSRGFGFVNFENPDDARWAMERMNGTELGSKV 261
Score = 68.2 bits (165), Expect = 7e-10
Identities = 42/96 (43%), Positives = 55/96 (57%)
Frame = +3
Query: 120 SEREALAMEFKCSNLYIKNLSSNITDELLQDRFSEFGAVNSAIVMNDSTGKSKGFGFVSF 299
S R+ A N+Y+KNLS +I + LQ+ F EFG V S V GKSKG GFV F
Sbjct: 89 SHRDPDARRNGIGNVYVKNLSESIDNVGLQELFGEFGTVLSCKVATFEDGKSKGHGFVQF 148
Query: 300 ELPEHAKIAMEAMNGSKLGSGSKILYVIPAQKKAER 407
E + A A+E +NGS + G K +YV KK++R
Sbjct: 149 ESEDSANSAIEKLNGSIV--GDKQIYVGKFVKKSDR 182
>ref|XP_002264613.1| PREDICTED: probable polyadenylate-binding protein At2g36660 [Vitis
vinifera] gi|297740018|emb|CBI30200.3| unnamed protein
product [Vitis vinifera]
Length = 634
Score = 112 bits (281), Expect(2) = 1e-28
Identities = 57/115 (49%), Positives = 83/115 (72%)
Frame = +3
Query: 117 KSEREALAMEFKCSNLYIKNLSSNITDELLQDRFSEFGAVNSAIVMNDSTGKSKGFGFVS 296
K++R + K +NLYIKNL ++T+E L+++F EFG + S ++ D G S+GFGFV+
Sbjct: 178 KTDRVLPNPDAKYTNLYIKNLDPDVTEEALREKFFEFGKIASLVISKDENGMSRGFGFVN 237
Query: 297 FELPEHAKIAMEAMNGSKLGSGSKILYVIPAQKKAEREKILKLQFGKKLDQPLKK 461
FE PE AK A+EA+NG +L GSK+LYV AQKKAERE++L+ QF +K ++ + K
Sbjct: 238 FESPEDAKRALEALNGLQL--GSKVLYVARAQKKAEREQLLRRQFEEKRNEQILK 290
Score = 38.5 bits (88), Expect(2) = 1e-28
Identities = 19/28 (67%), Positives = 22/28 (78%)
Frame = +1
Query: 4 EKGISKGFGFVQMESEEAALSAIKGLNG 87
E G SKG+GFVQ ESEE A +AI+ LNG
Sbjct: 135 EDGKSKGYGFVQFESEEYANAAIEKLNG 162
Score = 77.8 bits (190), Expect(2) = 4e-18
Identities = 39/112 (34%), Positives = 67/112 (59%)
Frame = +3
Query: 108 QETKSEREALAMEFKCSNLYIKNLSSNITDELLQDRFSEFGAVNSAIVMNDSTGKSKGFG 287
++ + +R ++++ SN+Y+KN+ N+ D+ L++ FS G + SA +M D G SKGFG
Sbjct: 278 RQFEEKRNEQILKYRGSNVYVKNIDDNVNDDDLREHFSVCGKITSAKLMRDQKGISKGFG 337
Query: 288 FVSFELPEHAKIAMEAMNGSKLGSGSKILYVIPAQKKAEREKILKLQFGKKL 443
FV F P+ A A+ +G K LYV AQ+K +R+ L+L + +++
Sbjct: 338 FVCFSTPDEASKAVNTFHGYMF--HRKPLYVAIAQRKEDRQAQLQLHYAQRM 387
Score = 38.1 bits (87), Expect(2) = 4e-18
Identities = 17/36 (47%), Positives = 24/36 (66%)
Frame = +1
Query: 1 EEKGISKGFGFVQMESEEAALSAIKGLNGKDLKDEI 108
+E G+S+GFGFV ES E A A++ LNG L ++
Sbjct: 225 DENGMSRGFGFVNFESPEDAKRALEALNGLQLGSKV 260
Score = 61.2 bits (147), Expect = 8e-08
Identities = 32/75 (42%), Positives = 45/75 (60%)
Frame = +3
Query: 120 SEREALAMEFKCSNLYIKNLSSNITDELLQDRFSEFGAVNSAIVMNDSTGKSKGFGFVSF 299
S R+ A N+++KNLS +I + LQ F +FG + S V+ GKSKG+GFV F
Sbjct: 88 SHRDPDARRSGIGNVFVKNLSDSIDNVRLQAMFQKFGNILSCKVVVTEDGKSKGYGFVQF 147
Query: 300 ELPEHAKIAMEAMNG 344
E E+A A+E +NG
Sbjct: 148 ESEEYANAAIEKLNG 162
>emb|CAN74140.1| hypothetical protein VITISV_008914 [Vitis vinifera]
Length = 544
Score = 112 bits (281), Expect(2) = 1e-28
Identities = 57/115 (49%), Positives = 83/115 (72%)
Frame = +3
Query: 117 KSEREALAMEFKCSNLYIKNLSSNITDELLQDRFSEFGAVNSAIVMNDSTGKSKGFGFVS 296
K++R + K +NLYIKNL ++T+E L+++F EFG + S ++ D G S+GFGFV+
Sbjct: 198 KTDRVLPNPDAKYTNLYIKNLDPDVTEEALREKFFEFGKIASLVISKDENGMSRGFGFVN 257
Query: 297 FELPEHAKIAMEAMNGSKLGSGSKILYVIPAQKKAEREKILKLQFGKKLDQPLKK 461
FE PE AK A+EA+NG +L GSK+LYV AQKKAERE++L+ QF +K ++ + K
Sbjct: 258 FESPEDAKRALEALNGLQL--GSKVLYVARAQKKAEREQLLRRQFEEKRNEQILK 310
Score = 38.5 bits (88), Expect(2) = 1e-28
Identities = 19/28 (67%), Positives = 22/28 (78%)
Frame = +1
Query: 4 EKGISKGFGFVQMESEEAALSAIKGLNG 87
E G SKG+GFVQ ESEE A +AI+ LNG
Sbjct: 155 EDGKSKGYGFVQFESEEYANAAIEKLNG 182
Score = 77.8 bits (190), Expect(2) = 4e-18
Identities = 39/112 (34%), Positives = 67/112 (59%)
Frame = +3
Query: 108 QETKSEREALAMEFKCSNLYIKNLSSNITDELLQDRFSEFGAVNSAIVMNDSTGKSKGFG 287
++ + +R ++++ SN+Y+KN+ N+ D+ L++ FS G + SA +M D G SKGFG
Sbjct: 298 RQFEEKRNEQILKYRGSNVYVKNIDDNVNDDDLREHFSVCGKITSAKLMRDQKGISKGFG 357
Query: 288 FVSFELPEHAKIAMEAMNGSKLGSGSKILYVIPAQKKAEREKILKLQFGKKL 443
FV F P+ A A+ +G K LYV AQ+K +R+ L+L + +++
Sbjct: 358 FVCFSTPDEASKAVNTFHGYMF--HRKPLYVAIAQRKEDRQAQLQLHYAQRM 407
Score = 38.1 bits (87), Expect(2) = 4e-18
Identities = 17/36 (47%), Positives = 24/36 (66%)
Frame = +1
Query: 1 EEKGISKGFGFVQMESEEAALSAIKGLNGKDLKDEI 108
+E G+S+GFGFV ES E A A++ LNG L ++
Sbjct: 245 DENGMSRGFGFVNFESPEDAKRALEALNGLQLGSKV 280
>ref|XP_003521427.1| PREDICTED: probable polyadenylate-binding protein At2g36660-like
[Glycine max]
Length = 632
Score = 111 bits (278), Expect(2) = 2e-28
Identities = 59/115 (51%), Positives = 82/115 (71%)
Frame = +3
Query: 117 KSEREALAMEFKCSNLYIKNLSSNITDELLQDRFSEFGAVNSAIVMNDSTGKSKGFGFVS 296
KS+R + + +NLY+KNL ++++ LQ++FS FG + S ++ D+ G SKGFGFV+
Sbjct: 178 KSDRILPGPDARYTNLYMKNLDLDVSEATLQEKFSSFGKIVSLVIAKDNIGMSKGFGFVN 237
Query: 297 FELPEHAKIAMEAMNGSKLGSGSKILYVIPAQKKAEREKILKLQFGKKLDQPLKK 461
++ P+ AK AMEAMNGSKL GSKILYV AQKKAERE+IL QF +K + + K
Sbjct: 238 YDNPDDAKRAMEAMNGSKL--GSKILYVARAQKKAEREQILHHQFEEKRKEQILK 290
Score = 39.3 bits (90), Expect(2) = 2e-28
Identities = 19/34 (55%), Positives = 25/34 (73%)
Frame = +1
Query: 4 EKGISKGFGFVQMESEEAALSAIKGLNGKDLKDE 105
E G SKG+GFVQ ESEE++ AI+ LNG + D+
Sbjct: 135 EDGKSKGYGFVQFESEESSNVAIEKLNGSTVGDK 168
Score = 84.3 bits (207), Expect(2) = 3e-18
Identities = 43/109 (39%), Positives = 68/109 (62%)
Frame = +3
Query: 117 KSEREALAMEFKCSNLYIKNLSSNITDELLQDRFSEFGAVNSAIVMNDSTGKSKGFGFVS 296
+ +R+ +++K SN+Y+KN+ +++DE L+D FS G + SA +M D G SKGFGFV
Sbjct: 281 EEKRKEQILKYKGSNIYVKNIDDHVSDEELRDHFSACGIITSAKIMRDDKGISKGFGFVC 340
Query: 297 FELPEHAKIAMEAMNGSKLGSGSKILYVIPAQKKAEREKILKLQFGKKL 443
F PE A A+ +G K LYV AQ+K +R+ L+LQ+ +++
Sbjct: 341 FSTPEEANKAVNTFHGFMF--HGKPLYVALAQRKEDRKAQLQLQYAQQV 387
Score = 32.3 bits (72), Expect(2) = 3e-18
Identities = 14/33 (42%), Positives = 22/33 (66%)
Frame = +1
Query: 10 GISKGFGFVQMESEEAALSAIKGLNGKDLKDEI 108
G+SKGFGFV ++ + A A++ +NG L +I
Sbjct: 228 GMSKGFGFVNYDNPDDAKRAMEAMNGSKLGSKI 260
Score = 71.6 bits (174), Expect = 6e-11
Identities = 40/96 (41%), Positives = 59/96 (61%)
Frame = +3
Query: 120 SEREALAMEFKCSNLYIKNLSSNITDELLQDRFSEFGAVNSAIVMNDSTGKSKGFGFVSF 299
S R+ A + NL++KNL +I + LQD F ++G + S+ V+ GKSKG+GFV F
Sbjct: 88 SRRDPDARKNAIGNLFVKNLPESIDNAGLQDMFKKYGNILSSKVVMSEDGKSKGYGFVQF 147
Query: 300 ELPEHAKIAMEAMNGSKLGSGSKILYVIPAQKKAER 407
E E + +A+E +NGS + G K LYV KK++R
Sbjct: 148 ESEESSNVAIEKLNGSTV--GDKQLYVGKFVKKSDR 181
>ref|XP_003537028.1| PREDICTED: probable polyadenylate-binding protein At2g36660-like
[Glycine max]
Length = 502
Score = 110 bits (274), Expect(2) = 3e-28
Identities = 60/115 (52%), Positives = 78/115 (67%)
Frame = +3
Query: 117 KSEREALAMEFKCSNLYIKNLSSNITDELLQDRFSEFGAVNSAIVMNDSTGKSKGFGFVS 296
K +R + K +NLYIKNL S+IT+ LLQ++FS FG + S ++ D G SKGF FV+
Sbjct: 178 KGDRILPGYDAKYTNLYIKNLDSDITEALLQEKFSSFGKIISLVISKDDNGLSKGFAFVN 237
Query: 297 FELPEHAKIAMEAMNGSKLGSGSKILYVIPAQKKAEREKILKLQFGKKLDQPLKK 461
+E P+ A+ AMEAMNG K GSK LYV AQKKAERE+IL QF +K + + K
Sbjct: 238 YENPDDARKAMEAMNGLKF--GSKNLYVARAQKKAEREQILHRQFEEKRKEQILK 290
Score = 40.0 bits (92), Expect(2) = 3e-28
Identities = 19/32 (59%), Positives = 25/32 (78%)
Frame = +1
Query: 10 GISKGFGFVQMESEEAALSAIKGLNGKDLKDE 105
G SKG+GFVQ ESEE+A +AI+ LNG + D+
Sbjct: 137 GKSKGYGFVQFESEESANNAIEKLNGSTVGDK 168
Score = 81.6 bits (200), Expect(2) = 4e-17
Identities = 42/108 (38%), Positives = 65/108 (60%)
Frame = +3
Query: 108 QETKSEREALAMEFKCSNLYIKNLSSNITDELLQDRFSEFGAVNSAIVMNDSTGKSKGFG 287
++ + +R+ ++++ SNLY+KN+ ++TD+ L+D FS G + S VM D G SKGFG
Sbjct: 278 RQFEEKRKEQILKYQASNLYVKNIDDDVTDKELRDLFSSCGTITSVKVMRDDKGISKGFG 337
Query: 288 FVSFELPEHAKIAMEAMNGSKLGSGSKILYVIPAQKKAEREKILKLQF 431
FV F PE A A+ + NG K LY+ AQ+K +R+ L L +
Sbjct: 338 FVCFSNPEEANKAVRSFNGCMF--HRKPLYIAIAQRKMDRKTQLNLHY 383
Score = 31.2 bits (69), Expect(2) = 4e-17
Identities = 12/29 (41%), Positives = 20/29 (68%)
Frame = +1
Query: 1 EEKGISKGFGFVQMESEEAALSAIKGLNG 87
++ G+SKGF FV E+ + A A++ +NG
Sbjct: 225 DDNGLSKGFAFVNYENPDDARKAMEAMNG 253
Score = 63.5 bits (153), Expect = 2e-08
Identities = 34/83 (40%), Positives = 52/83 (62%)
Frame = +3
Query: 159 NLYIKNLSSNITDELLQDRFSEFGAVNSAIVMNDSTGKSKGFGFVSFELPEHAKIAMEAM 338
N+++KNL+ +I + L D F ++G + S+ V+ GKSKG+GFV FE E A A+E +
Sbjct: 101 NVFVKNLAGSIDNAGLHDLFQKYGNILSSKVVMSGDGKSKGYGFVQFESEESANNAIEKL 160
Query: 339 NGSKLGSGSKILYVIPAQKKAER 407
NGS + G K +YV +K +R
Sbjct: 161 NGSTV--GDKQIYVGKFVRKGDR 181