BLASTX nr result
ID: Dioscorea21_contig00032878
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dioscorea21_contig00032878
(838 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002282614.1| PREDICTED: RNA pseudourine synthase 4, mitoc... 287 2e-75
ref|XP_002518674.1| ribosomal pseudouridine synthase, putative [... 276 5e-72
ref|XP_003516775.1| PREDICTED: RNA pseudourine synthase 4, mitoc... 268 9e-70
gb|EEE69173.1| hypothetical protein OsJ_28343 [Oryza sativa Japo... 268 1e-69
gb|EEC84066.1| hypothetical protein OsI_30347 [Oryza sativa Indi... 268 1e-69
>ref|XP_002282614.1| PREDICTED: RNA pseudourine synthase 4, mitochondrial [Vitis
vinifera] gi|296090438|emb|CBI40257.3| unnamed protein
product [Vitis vinifera]
Length = 476
Score = 287 bits (734), Expect = 2e-75
Identities = 144/225 (64%), Positives = 181/225 (80%), Gaps = 2/225 (0%)
Frame = +1
Query: 1 SILHSIFREKTSGAVSHNLKIRSRPLQRKYWALVIGTPRDPNGLISAPLAKVVLDNGKSE 180
+ILHSIFREKT GA ++++ + R LQR+YWALVIG+PR P GLISAPL KVV+D+GKSE
Sbjct: 254 TILHSIFREKTFGASNNDIDTKKRILQRRYWALVIGSPRRPRGLISAPLGKVVVDDGKSE 313
Query: 181 RITIVNDANIEKSTSSNHALTEYRVIRTSIQGYTWLELLPLTGRKHQLRVHCAEVLGTPI 360
RITIV++ ++ SS HA+TEYRVI++S GYTWLEL PLTGRKHQLRVHCAEVLGTPI
Sbjct: 314 RITIVDNV---QTMSSQHAITEYRVIKSSCHGYTWLELSPLTGRKHQLRVHCAEVLGTPI 370
Query: 361 IGDYKYGWQSHKKWQPIACSTLSTKY-ENIPIKKL-PFGLELEGGSIDEKQPRLHLHCRQ 534
+GDYKYGWQ+H+KW+ + S + EN+ +K PFGL+LE GSI +KQP LHLHC+Q
Sbjct: 371 VGDYKYGWQAHRKWKQLFQSNIEKNLDENLSNRKTHPFGLDLESGSILDKQPHLHLHCKQ 430
Query: 535 MVLPDISVALKHLQSESSNYNLSKCEKINLVAPLPLHMQISWDIL 669
MVLP++S+AL++LQ S+ +LS+ E + VAPLP HMQ SWDIL
Sbjct: 431 MVLPNVSLALQNLQL-SAECDLSELESLEFVAPLPSHMQRSWDIL 474
>ref|XP_002518674.1| ribosomal pseudouridine synthase, putative [Ricinus communis]
gi|223542055|gb|EEF43599.1| ribosomal pseudouridine
synthase, putative [Ricinus communis]
Length = 536
Score = 276 bits (705), Expect = 5e-72
Identities = 141/224 (62%), Positives = 173/224 (77%), Gaps = 2/224 (0%)
Frame = +1
Query: 4 ILHSIFREKTSGAVSHNLKIRSRPLQRKYWALVIGTPRDPNGLISAPLAKVVLDNGKSER 183
+LHS+FREKT A +H++ R R LQRKYWALVIG+PR G+ISAPL KVV+D+GKS+R
Sbjct: 316 VLHSVFREKTFAASNHDIGERRRILQRKYWALVIGSPRRQKGIISAPLGKVVVDDGKSDR 375
Query: 184 ITIVNDANIEKSTSSNHALTEYRVIRTSIQGYTWLELLPLTGRKHQLRVHCAEVLGTPII 363
IT+V +A +STS HA+T+YRV+ +S GY WLEL P+TGRKHQLRVHCAEVLGTPI+
Sbjct: 376 ITVVENA---ESTSFQHAVTQYRVMESS-HGYAWLELSPITGRKHQLRVHCAEVLGTPIV 431
Query: 364 GDYKYGWQSHKKWQPIACSTL-STKYENIPIKK-LPFGLELEGGSIDEKQPRLHLHCRQM 537
GDYKYGWQ H+KW+ + L EN KK LPFG++LE GSI EK PRLHLHC+QM
Sbjct: 432 GDYKYGWQVHRKWKQLPFPNLEKISNENALCKKILPFGIDLESGSISEKHPRLHLHCKQM 491
Query: 538 VLPDISVALKHLQSESSNYNLSKCEKINLVAPLPLHMQISWDIL 669
VLPD+S AL+ +Q+ SSNY+ S + I L APLP +MQ SWDIL
Sbjct: 492 VLPDVSQALRGVQT-SSNYDFSDLKSIELDAPLPSYMQRSWDIL 534
>ref|XP_003516775.1| PREDICTED: RNA pseudourine synthase 4, mitochondrial-like [Glycine
max]
Length = 427
Score = 268 bits (686), Expect = 9e-70
Identities = 138/226 (61%), Positives = 173/226 (76%), Gaps = 1/226 (0%)
Frame = +1
Query: 1 SILHSIFREKTSGAVSHNLKIRSRPLQRKYWALVIGTPRDPNGLISAPLAKVVLDNGKSE 180
++LHSIFREKTS A S ++ R LQR+YWALV+G PR P GL++A L KVV+DNG+S+
Sbjct: 207 TVLHSIFREKTSRA-SDDIGKEKRILQRRYWALVLGCPRRPKGLVTASLGKVVVDNGRSD 265
Query: 181 RITIVNDANIEKSTSSNHALTEYRVIRTSIQGYTWLELLPLTGRKHQLRVHCAEVLGTPI 360
RITIV+++ + SS HA+TEYRVI +S QGYTWLEL PLTGRKHQLRVHCAEVLGTPI
Sbjct: 266 RITIVDNSTL---MSSQHAITEYRVIASSSQGYTWLELTPLTGRKHQLRVHCAEVLGTPI 322
Query: 361 IGDYKYGWQSHKKWQPIACSTL-STKYENIPIKKLPFGLELEGGSIDEKQPRLHLHCRQM 537
+GDYKYGWQ+H+KW + ++ E + +KLPFGL L GSI E PRLHLHC+QM
Sbjct: 323 VGDYKYGWQAHRKWGHFDLPNVEDSREELLNEEKLPFGLNLNKGSISENHPRLHLHCKQM 382
Query: 538 VLPDISVALKHLQSESSNYNLSKCEKINLVAPLPLHMQISWDILGY 675
VLP+IS AL+++QS SS +LS E++ LVA LP +MQ SWD+ Y
Sbjct: 383 VLPNISQALQNVQSASS-CDLSLVEELELVADLPPYMQRSWDVTNY 427
>gb|EEE69173.1| hypothetical protein OsJ_28343 [Oryza sativa Japonica Group]
Length = 465
Score = 268 bits (685), Expect = 1e-69
Identities = 138/223 (61%), Positives = 169/223 (75%)
Frame = +1
Query: 1 SILHSIFREKTSGAVSHNLKIRSRPLQRKYWALVIGTPRDPNGLISAPLAKVVLDNGKSE 180
S+LH+IFREKT+ A++ + LQRKY ALVIGTPR P GL+SAPLAK++L +GKSE
Sbjct: 245 SMLHAIFREKTADALADGTQ---HVLQRKYVALVIGTPRHPKGLLSAPLAKILLQDGKSE 301
Query: 181 RITIVNDANIEKSTSSNHALTEYRVIRTSIQGYTWLELLPLTGRKHQLRVHCAEVLGTPI 360
R+TI +N + S ALTEYRVI + QGYTWLEL P TGRKHQLRVHCAEVLGTPI
Sbjct: 302 RLTIRASSN---AASVQDALTEYRVIESCPQGYTWLELFPRTGRKHQLRVHCAEVLGTPI 358
Query: 361 IGDYKYGWQSHKKWQPIACSTLSTKYENIPIKKLPFGLELEGGSIDEKQPRLHLHCRQMV 540
+GDYKYG Q+H+KW P+ + E + +KLPFGL + GGSI E+QP+LHLHC+QMV
Sbjct: 359 VGDYKYGRQAHQKWMPLPLPR-TIDEELLRKRKLPFGLVVGGGSIAEEQPQLHLHCKQMV 417
Query: 541 LPDISVALKHLQSESSNYNLSKCEKINLVAPLPLHMQISWDIL 669
LPD+SVAL LQS N + S EK+N VAPLPLHM++SW+IL
Sbjct: 418 LPDVSVALHRLQSSDVNPDFSDLEKLNFVAPLPLHMRLSWEIL 460
>gb|EEC84066.1| hypothetical protein OsI_30347 [Oryza sativa Indica Group]
Length = 465
Score = 268 bits (684), Expect = 1e-69
Identities = 137/223 (61%), Positives = 169/223 (75%)
Frame = +1
Query: 1 SILHSIFREKTSGAVSHNLKIRSRPLQRKYWALVIGTPRDPNGLISAPLAKVVLDNGKSE 180
S+LH+IFREKT+ A++ + LQRKY ALVIGTPR P GL+SAPLAK++L +GKSE
Sbjct: 245 SMLHAIFREKTADALADGTQ---HVLQRKYVALVIGTPRHPKGLLSAPLAKILLQDGKSE 301
Query: 181 RITIVNDANIEKSTSSNHALTEYRVIRTSIQGYTWLELLPLTGRKHQLRVHCAEVLGTPI 360
R+T+ +N + S ALTEYRVI + QGYTWLEL P TGRKHQLRVHCAEVLGTPI
Sbjct: 302 RLTVRASSN---AASVQDALTEYRVIESCPQGYTWLELFPRTGRKHQLRVHCAEVLGTPI 358
Query: 361 IGDYKYGWQSHKKWQPIACSTLSTKYENIPIKKLPFGLELEGGSIDEKQPRLHLHCRQMV 540
+GDYKYG Q+H+KW P+ + E + +KLPFGL + GGSI E+QP+LHLHC+QMV
Sbjct: 359 VGDYKYGRQAHQKWMPLPLPR-TIDEELLRKRKLPFGLVVGGGSIAEEQPQLHLHCKQMV 417
Query: 541 LPDISVALKHLQSESSNYNLSKCEKINLVAPLPLHMQISWDIL 669
LPD+SVAL LQS N + S EK+N VAPLPLHM++SW+IL
Sbjct: 418 LPDVSVALHRLQSSDVNPDFSDLEKLNFVAPLPLHMRLSWEIL 460