BLASTX nr result
ID: Dioscorea21_contig00031372
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dioscorea21_contig00031372
(371 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002278897.1| PREDICTED: pentatricopeptide repeat-containi... 117 1e-24
ref|XP_002272744.1| PREDICTED: pentatricopeptide repeat-containi... 113 1e-23
ref|XP_003612041.1| Pentatricopeptide repeat-containing protein ... 112 3e-23
emb|CAN66581.1| hypothetical protein VITISV_030261 [Vitis vinifera] 111 7e-23
ref|XP_003516564.1| PREDICTED: pentatricopeptide repeat-containi... 110 1e-22
>ref|XP_002278897.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like [Vitis vinifera]
Length = 719
Score = 117 bits (293), Expect = 1e-24
Identities = 55/124 (44%), Positives = 83/124 (66%), Gaps = 1/124 (0%)
Frame = +1
Query: 1 LRGYEQRNDQWKAIQLFY-QMLYSSVIPDKFSFPFVLKACANARALKEGEKIHCRVMKSP 177
+R Y ND + A+ +Y QM+ V P+ ++FP ++K C ++ +GEKIH R++K
Sbjct: 130 MRTYVNVNDPYTALGFYYEQMVRKCVAPNHYTFPLLVKVCWEIGSIGDGEKIHARILKFG 189
Query: 178 KSMDLFVQDSLIFMYAKCGQINAARISFDTMANKSLISWNSMIDGYVKQGDVSAAFKLFD 357
+DLFV++SLI MY+ CG+I AR F+ + L++WNSMIDGYVK G++ AA +LF+
Sbjct: 190 FELDLFVRNSLIHMYSVCGRIGDARAMFEVCSISDLVTWNSMIDGYVKNGEIGAARELFE 249
Query: 358 SMPE 369
MPE
Sbjct: 250 EMPE 253
Score = 73.9 bits (180), Expect = 1e-11
Identities = 41/119 (34%), Positives = 68/119 (57%), Gaps = 1/119 (0%)
Frame = +1
Query: 10 YEQRNDQWKAIQLFYQMLYSSVIPDKFSFPFVLKACANARALKEGEKIHCRVMKSPK-SM 186
Y + D + +++F +M+ +P++ + VL ACA+ L G+ IH + +
Sbjct: 328 YVRIKDYDECLRMFDKMM-GETMPNEATLVSVLTACAHLGRLDRGKWIHSYIKNNRVIEP 386
Query: 187 DLFVQDSLIFMYAKCGQINAARISFDTMANKSLISWNSMIDGYVKQGDVSAAFKLFDSM 363
D+ + +L+ MYAKCG ++ AR FD M+N+S++SWNSMI GY G A ++F M
Sbjct: 387 DVLLSTALLTMYAKCGAMDLARDVFDKMSNRSVVSWNSMIMGYGMHGQADKALEMFLDM 445
>ref|XP_002272744.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Vitis vinifera]
Length = 622
Score = 113 bits (283), Expect = 1e-23
Identities = 49/123 (39%), Positives = 84/123 (68%)
Frame = +1
Query: 1 LRGYEQRNDQWKAIQLFYQMLYSSVIPDKFSFPFVLKACANARALKEGEKIHCRVMKSPK 180
+RGY + +A+ L++ MLY SV + ++FPF+LKAC++ AL+E ++IH ++K
Sbjct: 90 IRGYSNSKEPEEALLLYHHMLYHSVPHNAYTFPFLLKACSSMSALEETQQIHAHIIKMGF 149
Query: 181 SMDLFVQDSLIFMYAKCGQINAARISFDTMANKSLISWNSMIDGYVKQGDVSAAFKLFDS 360
+++ +SL+ +Y+K G I +AR+ FD + + +SWNSMIDGY K G++ A+++F+
Sbjct: 150 GSEIYTTNSLLNVYSKSGDIKSARLLFDQVDQRDTVSWNSMIDGYTKCGEIEMAYEIFNH 209
Query: 361 MPE 369
MPE
Sbjct: 210 MPE 212
Score = 61.6 bits (148), Expect = 6e-08
Identities = 36/110 (32%), Positives = 54/110 (49%)
Frame = +1
Query: 34 KAIQLFYQMLYSSVIPDKFSFPFVLKACANARALKEGEKIHCRVMKSPKSMDLFVQDSLI 213
+A+ LF++M + + D + L+ACA+ L +G+ IH + K +D + LI
Sbjct: 233 EALNLFHRMQTAGIKLDNVALVSTLQACADLGVLDQGKWIHAYIKKHEIEIDPILGCVLI 292
Query: 214 FMYAKCGQINAARISFDTMANKSLISWNSMIDGYVKQGDVSAAFKLFDSM 363
MYAKCG + A F M K + W +MI GY G A + F M
Sbjct: 293 DMYAKCGDLEEAIEVFRKMEEKGVSVWTAMISGYAIHGRGREALEWFMKM 342
>ref|XP_003612041.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355513376|gb|AES94999.1| Pentatricopeptide
repeat-containing protein [Medicago truncatula]
Length = 518
Score = 112 bits (280), Expect = 3e-23
Identities = 49/123 (39%), Positives = 84/123 (68%)
Frame = +1
Query: 1 LRGYEQRNDQWKAIQLFYQMLYSSVIPDKFSFPFVLKACANARALKEGEKIHCRVMKSPK 180
+R Y ND +A+ L++QML+ S+ + ++FPF+LKAC+ AL E +IH +++K
Sbjct: 83 IRAYSNSNDPEEALLLYHQMLHHSIPHNAYTFPFLLKACSALSALAETHQIHVQIIKRGF 142
Query: 181 SMDLFVQDSLIFMYAKCGQINAARISFDTMANKSLISWNSMIDGYVKQGDVSAAFKLFDS 360
+++ +SL+ +YA G I +A + FD + ++ ++SWN+MIDGY+K G+V A+K+F +
Sbjct: 143 GSEVYATNSLLRVYAISGSIKSAHVLFDLLPSRDIVSWNTMIDGYIKCGNVEMAYKIFQA 202
Query: 361 MPE 369
MPE
Sbjct: 203 MPE 205
Score = 70.5 bits (171), Expect = 1e-10
Identities = 38/119 (31%), Positives = 62/119 (52%)
Frame = +1
Query: 7 GYEQRNDQWKAIQLFYQMLYSSVIPDKFSFPFVLKACANARALKEGEKIHCRVMKSPKSM 186
G+ + +A+ L QML + + PDK + L ACA AL++G+ IH + K+ +
Sbjct: 217 GFVRTGMHKEALCLLQQMLVAGIKPDKITLSCSLSACAGLGALEQGKWIHTYIGKNKIKI 276
Query: 187 DLFVQDSLIFMYAKCGQINAARISFDTMANKSLISWNSMIDGYVKQGDVSAAFKLFDSM 363
D + +LI MY KCG++ A + F + K + +W ++I G+ G S A F M
Sbjct: 277 DPVLGCALIDMYVKCGEMKKALLVFSKLEKKCVYTWTAIIGGFAVHGKGSEALDWFTQM 335
>emb|CAN66581.1| hypothetical protein VITISV_030261 [Vitis vinifera]
Length = 622
Score = 111 bits (277), Expect = 7e-23
Identities = 48/123 (39%), Positives = 83/123 (67%)
Frame = +1
Query: 1 LRGYEQRNDQWKAIQLFYQMLYSSVIPDKFSFPFVLKACANARALKEGEKIHCRVMKSPK 180
+RGY + +A+ L++ MLY SV + ++FPF+LKAC++ A +E ++IH ++K
Sbjct: 90 IRGYSNSKEPEEALLLYHHMLYHSVPHNAYTFPFLLKACSSMSASEETQQIHAHIIKMGF 149
Query: 181 SMDLFVQDSLIFMYAKCGQINAARISFDTMANKSLISWNSMIDGYVKQGDVSAAFKLFDS 360
+++ +SL+ +Y+K G I +AR+ FD + + +SWNSMIDGY K G++ A+++F+
Sbjct: 150 GSEIYTTNSLLNVYSKSGDIKSARLLFDQVDQRDTVSWNSMIDGYTKCGEIEMAYEIFNH 209
Query: 361 MPE 369
MPE
Sbjct: 210 MPE 212
Score = 61.6 bits (148), Expect = 6e-08
Identities = 36/110 (32%), Positives = 54/110 (49%)
Frame = +1
Query: 34 KAIQLFYQMLYSSVIPDKFSFPFVLKACANARALKEGEKIHCRVMKSPKSMDLFVQDSLI 213
+A+ LF++M + + D + L+ACA+ L +G+ IH + K +D + LI
Sbjct: 233 EALNLFHRMQTAGIKLDNVALVSTLQACADLGVLDQGKWIHAYIKKHEIEIDPILGCVLI 292
Query: 214 FMYAKCGQINAARISFDTMANKSLISWNSMIDGYVKQGDVSAAFKLFDSM 363
MYAKCG + A F M K + W +MI GY G A + F M
Sbjct: 293 DMYAKCGDLEEAIEVFRKMEEKGVSVWTAMISGYAIHGRGREALEWFMKM 342
>ref|XP_003516564.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Glycine max]
Length = 516
Score = 110 bits (275), Expect = 1e-22
Identities = 48/123 (39%), Positives = 83/123 (67%)
Frame = +1
Query: 1 LRGYEQRNDQWKAIQLFYQMLYSSVIPDKFSFPFVLKACANARALKEGEKIHCRVMKSPK 180
LR Y ND A+ L++QML++SV + ++FPF+LKAC+ A +E ++IH ++K
Sbjct: 82 LRAYSNSNDPEAALLLYHQMLHNSVPHNSYTFPFLLKACSALSAFEETQQIHAHIIKRGF 141
Query: 181 SMDLFVQDSLIFMYAKCGQINAARISFDTMANKSLISWNSMIDGYVKQGDVSAAFKLFDS 360
++++ +SL+ +YA G I +A + F+ + + ++SWN MIDGY+K G++ A+K+F +
Sbjct: 142 GLEVYATNSLLRVYAISGNIQSAHVLFNQLPTRDIVSWNIMIDGYIKFGNLDMAYKIFQA 201
Query: 361 MPE 369
MPE
Sbjct: 202 MPE 204
Score = 62.8 bits (151), Expect = 3e-08
Identities = 34/110 (30%), Positives = 54/110 (49%)
Frame = +1
Query: 34 KAIQLFYQMLYSSVIPDKFSFPFVLKACANARALKEGEKIHCRVMKSPKSMDLFVQDSLI 213
+A+ L QML + + PD + L ACA AL++G+ IH + K+ +D + L
Sbjct: 225 EALSLLQQMLVAGIKPDSITLSCSLSACAGLGALEQGKWIHTYIEKNEIKIDPVLGCVLT 284
Query: 214 FMYAKCGQINAARISFDTMANKSLISWNSMIDGYVKQGDVSAAFKLFDSM 363
MY KCG++ A + F + K + +W ++I G G A F M
Sbjct: 285 DMYVKCGEMEKALLVFSKLEKKCVCAWTAIIGGLAIHGKGREALDWFTQM 334