BLASTX nr result

ID: Dioscorea21_contig00029232 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Dioscorea21_contig00029232
         (214 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004157117.1| PREDICTED: niemann-Pick C1 protein-like [Cuc...   119   2e-25
ref|XP_004145542.1| PREDICTED: niemann-Pick C1 protein-like [Cuc...   119   2e-25
ref|XP_003523530.1| PREDICTED: niemann-Pick C1 protein-like [Gly...   119   3e-25
ref|XP_002307793.1| cholesterol transport protein [Populus trich...   116   2e-24
ref|XP_002272383.2| PREDICTED: niemann-Pick C1 protein-like [Vit...   115   3e-24

>ref|XP_004157117.1| PREDICTED: niemann-Pick C1 protein-like [Cucumis sativus]
          Length = 1296

 Score =  119 bits (299), Expect = 2e-25
 Identities = 56/71 (78%), Positives = 69/71 (97%)
 Frame = -2

Query: 213  HIWKTAVVNIAIGLGAVFVVCLVITCSLWTSSIILMVLAMIIVDMMGVMALLEIQLNAVS 34
            +IW+TA++N+AI +GAVF+VCL+ITCSLWTS+IIL+VLAMIIVD+MGVMA+L IQLNA+S
Sbjct: 1118 NIWRTALINLAIAIGAVFIVCLIITCSLWTSAIILLVLAMIIVDLMGVMAILNIQLNAIS 1177

Query: 33   VVNLVMSVGIA 1
            VVNLVMSVGIA
Sbjct: 1178 VVNLVMSVGIA 1188


>ref|XP_004145542.1| PREDICTED: niemann-Pick C1 protein-like [Cucumis sativus]
          Length = 1244

 Score =  119 bits (299), Expect = 2e-25
 Identities = 56/71 (78%), Positives = 69/71 (97%)
 Frame = -2

Query: 213  HIWKTAVVNIAIGLGAVFVVCLVITCSLWTSSIILMVLAMIIVDMMGVMALLEIQLNAVS 34
            +IW+TA++N+AI +GAVF+VCL+ITCSLWTS+IIL+VLAMIIVD+MGVMA+L IQLNA+S
Sbjct: 1066 NIWRTALINLAIAIGAVFIVCLIITCSLWTSAIILLVLAMIIVDLMGVMAILNIQLNAIS 1125

Query: 33   VVNLVMSVGIA 1
            VVNLVMSVGIA
Sbjct: 1126 VVNLVMSVGIA 1136


>ref|XP_003523530.1| PREDICTED: niemann-Pick C1 protein-like [Glycine max]
          Length = 1257

 Score =  119 bits (297), Expect = 3e-25
 Identities = 58/71 (81%), Positives = 68/71 (95%)
 Frame = -2

Query: 213  HIWKTAVVNIAIGLGAVFVVCLVITCSLWTSSIILMVLAMIIVDMMGVMALLEIQLNAVS 34
            HIWKTA+VN+AI +GAVF+VCLVIT SLW+SSIIL+VLAMI+VD+MGVMA+L IQLNA+S
Sbjct: 1081 HIWKTALVNLAIAIGAVFIVCLVITSSLWSSSIILLVLAMIVVDLMGVMAILNIQLNALS 1140

Query: 33   VVNLVMSVGIA 1
            VVNLVMSVGIA
Sbjct: 1141 VVNLVMSVGIA 1151


>ref|XP_002307793.1| cholesterol transport protein [Populus trichocarpa]
            gi|222857242|gb|EEE94789.1| cholesterol transport protein
            [Populus trichocarpa]
          Length = 1274

 Score =  116 bits (291), Expect = 2e-24
 Identities = 56/69 (81%), Positives = 66/69 (95%)
 Frame = -2

Query: 210  IWKTAVVNIAIGLGAVFVVCLVITCSLWTSSIILMVLAMIIVDMMGVMALLEIQLNAVSV 31
            IW+TA++N+AI +GAVFVVCLVITCSLW S+IIL+VLAMI+VD+MGVMA+L IQLNAVSV
Sbjct: 1097 IWRTALINLAIAIGAVFVVCLVITCSLWNSAIILLVLAMIVVDLMGVMAILNIQLNAVSV 1156

Query: 30   VNLVMSVGI 4
            VNLVMSVGI
Sbjct: 1157 VNLVMSVGI 1165


>ref|XP_002272383.2| PREDICTED: niemann-Pick C1 protein-like [Vitis vinifera]
          Length = 1309

 Score =  115 bits (289), Expect = 3e-24
 Identities = 54/70 (77%), Positives = 68/70 (97%)
 Frame = -2

Query: 210  IWKTAVVNIAIGLGAVFVVCLVITCSLWTSSIILMVLAMIIVDMMGVMALLEIQLNAVSV 31
            IW+TA++N+AI +GAVF+VCLVITCSLW+S+IIL+VLAMI+VD+MGVMA+L IQLNA+SV
Sbjct: 1132 IWRTALINLAIAIGAVFIVCLVITCSLWSSAIILLVLAMIVVDLMGVMAILNIQLNALSV 1191

Query: 30   VNLVMSVGIA 1
            VNLVM+VGIA
Sbjct: 1192 VNLVMAVGIA 1201


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