BLASTX nr result
ID: Dioscorea21_contig00029200
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dioscorea21_contig00029200
(701 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_004140525.1| PREDICTED: pentatricopeptide repeat-containi... 183 3e-44
ref|XP_002334407.1| predicted protein [Populus trichocarpa] gi|2... 181 1e-43
ref|XP_002874971.1| pentatricopeptide repeat-containing protein ... 181 2e-43
ref|XP_002302689.1| predicted protein [Populus trichocarpa] gi|2... 180 2e-43
ref|XP_002515124.1| pentatricopeptide repeat-containing protein,... 179 5e-43
>ref|XP_004140525.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g01570-like [Cucumis sativus]
gi|449523383|ref|XP_004168703.1| PREDICTED:
pentatricopeptide repeat-containing protein
At4g01570-like [Cucumis sativus]
Length = 803
Score = 183 bits (465), Expect = 3e-44
Identities = 88/179 (49%), Positives = 121/179 (67%), Gaps = 10/179 (5%)
Frame = +2
Query: 194 RKAGLQQDFCNLFDKLCQL-GFSFNAWTYNICIHAFGSWGHLALALKLFKEMK------- 349
RK ++ +F +FDKL + F F+ + YNICI+AFG WG+L AL LFKEMK
Sbjct: 220 RKLDMRVEFKKVFDKLRAIESFEFSVYGYNICIYAFGCWGYLDTALSLFKEMKEKSLVSE 279
Query: 350 --SPDICSFNSVLHALCLAGRVQDAVEVFDEMKSSGFEPDRFTYRTLILGCCKAFRIDEA 523
SPD+C++NS++H LCL G+V+DA+ V++E+K SG EPD FTYR +I GCCK+ R+D+A
Sbjct: 280 SFSPDLCTYNSIIHVLCLVGKVKDALIVWEELKGSGHEPDAFTYRIIIQGCCKSCRMDDA 339
Query: 524 LRVFREMEYNNVKCDTLVYNNIXXXXXXXXXXXXXCQMFDKMVSGGIGVSPYSYNILID 700
+F EMEYN + DT+VYN++ CQ+FDKMV + SP++YNILID
Sbjct: 340 TMIFNEMEYNGLIPDTIVYNSLLNGLFKARKVTEACQLFDKMVQEDVRASPWTYNILID 398
Score = 58.5 bits (140), Expect = 1e-06
Identities = 32/95 (33%), Positives = 53/95 (55%), Gaps = 4/95 (4%)
Frame = +2
Query: 272 TYNICIHAFGSWGHLALALKLFKEMKSP----DICSFNSVLHALCLAGRVQDAVEVFDEM 439
TYN+ I G G LA + +++ DI +N++++AL AGR+ D ++F +M
Sbjct: 670 TYNVIIQGLGKMGRADLASSVLEKLMEQGGYLDIVMYNTLINALGKAGRMDDVNKLFGQM 729
Query: 440 KSSGFEPDRFTYRTLILGCCKAFRIDEALRVFREM 544
++SG PD T+ TLI KA R+ +A + + M
Sbjct: 730 RNSGINPDVVTFNTLIEVHSKAGRLKDAYKFLKMM 764
Score = 57.8 bits (138), Expect = 2e-06
Identities = 35/127 (27%), Positives = 60/127 (47%), Gaps = 4/127 (3%)
Frame = +2
Query: 221 CNLFDKLCQLGFSFNAWTYNICIHAFGSWGHLALALKLFKEMKS----PDICSFNSVLHA 388
C LF+ +G + +TYN + +F G+ A +F EM DI ++N ++
Sbjct: 618 CKLFEIFSDMGVNPVKYTYNSMLSSFVKKGYFHQAWGIFNEMGENVCPADIATYNVIIQG 677
Query: 389 LCLAGRVQDAVEVFDEMKSSGFEPDRFTYRTLILGCCKAFRIDEALRVFREMEYNNVKCD 568
L GR A V +++ G D Y TLI KA R+D+ ++F +M + + D
Sbjct: 678 LGKMGRADLASSVLEKLMEQGGYLDIVMYNTLINALGKAGRMDDVNKLFGQMRNSGINPD 737
Query: 569 TLVYNNI 589
+ +N +
Sbjct: 738 VVTFNTL 744
>ref|XP_002334407.1| predicted protein [Populus trichocarpa] gi|222872045|gb|EEF09176.1|
predicted protein [Populus trichocarpa]
Length = 513
Score = 181 bits (459), Expect = 1e-43
Identities = 85/179 (47%), Positives = 121/179 (67%), Gaps = 10/179 (5%)
Frame = +2
Query: 194 RKAGLQQDFCNLFDKLC-QLGFSFNAWTYNICIHAFGSWGHLALALKLFKEMKS------ 352
R ++ +F +F KL ++GF N W YNICIHAFG WG L +L+LFKEMK
Sbjct: 191 RNGEMKVEFKTVFAKLRGKVGFELNTWGYNICIHAFGCWGDLTTSLRLFKEMKEKSLASG 250
Query: 353 ---PDICSFNSVLHALCLAGRVQDAVEVFDEMKSSGFEPDRFTYRTLILGCCKAFRIDEA 523
PD+C++NS++H LCLAG+V+DAV V++E+K SG EPD FTYR LI GCCK+++++++
Sbjct: 251 SLDPDLCTYNSLIHVLCLAGKVKDAVIVYEELKVSGHEPDAFTYRILIQGCCKSYQMEDS 310
Query: 524 LRVFREMEYNNVKCDTLVYNNIXXXXXXXXXXXXXCQMFDKMVSGGIGVSPYSYNILID 700
++F EM+YN DT+VYN++ CQ+F+KMV G+ S ++YNILID
Sbjct: 311 TKIFSEMQYNGFLPDTVVYNSLLDGMFKARKVMEACQLFEKMVQDGVRASCWTYNILID 369
Score = 58.9 bits (141), Expect = 9e-07
Identities = 37/125 (29%), Positives = 59/125 (47%), Gaps = 4/125 (3%)
Frame = +2
Query: 197 KAGLQQDFCNLFDKLCQLGFSFNAWTYNICIHAFGSWGHLALALKLFKEMKSP----DIC 364
KA + C LF+K+ Q G + WTYNI I G LF +K D
Sbjct: 338 KARKVMEACQLFEKMVQDGVRASCWTYNILIDGLCKNGRAEAGYNLFCGLKKKGQFVDAV 397
Query: 365 SFNSVLHALCLAGRVQDAVEVFDEMKSSGFEPDRFTYRTLILGCCKAFRIDEALRVFREM 544
+++ V+ LC G ++DA+ + +EM+ GF D T +L++ K R D R+ + +
Sbjct: 398 TYSIVVLLLCRKGHLEDALHLVEEMEERGFVVDLITITSLLIAFHKQGRWDCTERLMKHI 457
Query: 545 EYNNV 559
N+
Sbjct: 458 RDVNL 462
>ref|XP_002874971.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata] gi|297320808|gb|EFH51230.1|
pentatricopeptide repeat-containing protein [Arabidopsis
lyrata subsp. lyrata]
Length = 802
Score = 181 bits (458), Expect = 2e-43
Identities = 87/180 (48%), Positives = 120/180 (66%), Gaps = 11/180 (6%)
Frame = +2
Query: 194 RKAGLQQDFCNLFDKLCQLG-FSFNAWTYNICIHAFGSWGHLALALKLFKEMK------- 349
R+A ++ +F +F+KL + F F+ W+YNICIH FG WG L AL LFKEMK
Sbjct: 221 RRADMRSEFKTVFEKLKGMNRFKFDTWSYNICIHGFGCWGDLDAALSLFKEMKERSSVSG 280
Query: 350 ---SPDICSFNSVLHALCLAGRVQDAVEVFDEMKSSGFEPDRFTYRTLILGCCKAFRIDE 520
+PDIC++NS++H LCL G+ +DA+ V+DE+K SG EPD TYR LI GCCK++R+D+
Sbjct: 281 SSFAPDICTYNSLIHVLCLFGKAKDALIVWDELKVSGHEPDNSTYRILIQGCCKSYRMDD 340
Query: 521 ALRVFREMEYNNVKCDTLVYNNIXXXXXXXXXXXXXCQMFDKMVSGGIGVSPYSYNILID 700
A+R+F EM+YN DT+VYN + CQ+F+KMV G+ S ++YNILID
Sbjct: 341 AMRIFGEMQYNGFVPDTVVYNCLLDGTLKARKVTEACQLFEKMVQEGVRASCWTYNILID 400
Score = 67.0 bits (162), Expect = 3e-09
Identities = 40/133 (30%), Positives = 68/133 (51%), Gaps = 4/133 (3%)
Frame = +2
Query: 197 KAGLQQDFCNLFDKLCQLGFSFNAWTYNICIHAFGSWGHLALALKLFKEMKSP----DIC 364
KA + C LF+K+ Q G + WTYNI I G LF ++K D
Sbjct: 369 KARKVTEACQLFEKMVQEGVRASCWTYNILIDGLFRNGRAEAGFTLFCDLKKKGQFVDAI 428
Query: 365 SFNSVLHALCLAGRVQDAVEVFDEMKSSGFEPDRFTYRTLILGCCKAFRIDEALRVFREM 544
+F+ V+ LC G++++AV++ +EM++ GF D T +L++G K R D ++ + +
Sbjct: 429 TFSIVVLQLCREGKLEEAVKLVEEMETRGFTVDLVTISSLLIGFHKQGRWDWKEKLMKHV 488
Query: 545 EYNNVKCDTLVYN 583
N+ + L +N
Sbjct: 489 REGNLVPNVLRWN 501
Score = 57.4 bits (137), Expect = 3e-06
Identities = 38/109 (34%), Positives = 59/109 (54%), Gaps = 7/109 (6%)
Frame = +2
Query: 239 LCQLGFSFNAW---TYNICIHAFGSWGHLALAL----KLFKEMKSPDICSFNSVLHALCL 397
L Q+G +F A TYN+ I G G LA +L K+ DI +N++++A+
Sbjct: 651 LDQMGENFCAADIATYNVIIQGLGKMGRADLAGAVLDRLTKQGGYLDIVMYNTLINAIGK 710
Query: 398 AGRVQDAVEVFDEMKSSGFEPDRFTYRTLILGCCKAFRIDEALRVFREM 544
A R+ A ++FD MKS+G PD +Y T+I KA ++ EA + + M
Sbjct: 711 ANRLDAATQLFDHMKSNGINPDVVSYNTMIEVNSKAGKLKEAYKYLKAM 759
>ref|XP_002302689.1| predicted protein [Populus trichocarpa] gi|222844415|gb|EEE81962.1|
predicted protein [Populus trichocarpa]
Length = 640
Score = 180 bits (457), Expect = 2e-43
Identities = 86/179 (48%), Positives = 120/179 (67%), Gaps = 10/179 (5%)
Frame = +2
Query: 194 RKAGLQQDFCNLFDKLC-QLGFSFNAWTYNICIHAFGSWGHLALALKLFKEMKS------ 352
R ++ +F +F KL + GF N W YNICIHAFG WG L +L+LFKEMK
Sbjct: 55 RNGEMKVEFKTVFAKLRGKGGFELNTWGYNICIHAFGCWGDLTTSLRLFKEMKEKSLASG 114
Query: 353 ---PDICSFNSVLHALCLAGRVQDAVEVFDEMKSSGFEPDRFTYRTLILGCCKAFRIDEA 523
PD+C++NS++H LCLAG+V+DAV V++E+K SG EPD FTYR LI GCCK++++++A
Sbjct: 115 SLDPDLCTYNSLIHVLCLAGKVKDAVIVYEELKVSGHEPDAFTYRILIQGCCKSYQMEDA 174
Query: 524 LRVFREMEYNNVKCDTLVYNNIXXXXXXXXXXXXXCQMFDKMVSGGIGVSPYSYNILID 700
++F EM+YN DT+VYN++ CQ+F+KMV G+ S ++YNILID
Sbjct: 175 TKIFSEMQYNGFLPDTVVYNSLLDGMFKARKVMEACQLFEKMVQDGVRASCWTYNILID 233
Score = 67.0 bits (162), Expect = 3e-09
Identities = 42/125 (33%), Positives = 61/125 (48%), Gaps = 4/125 (3%)
Frame = +2
Query: 221 CNLFDKLCQLGFSFNAWTYNICIHAFGSWGHLALALKLFKEMKS----PDICSFNSVLHA 388
C LF+ +G ++TYN + +F G+ A +F EM PDI ++N V+
Sbjct: 454 CKLFEIFTDMGVDPVSYTYNSIMSSFVKKGYFNRAWDVFNEMGEKVCPPDIATYNLVIQG 513
Query: 389 LCLAGRVQDAVEVFDEMKSSGFEPDRFTYRTLILGCCKAFRIDEALRVFREMEYNNVKCD 568
L GR A V D++ G D Y TLI KA RIDEA +F +M+ + + D
Sbjct: 514 LGKMGRADLASSVLDKLMKQGGYLDIVMYNTLIDALGKAGRIDEANNLFEQMKISGLNPD 573
Query: 569 TLVYN 583
+ YN
Sbjct: 574 VVTYN 578
Score = 57.4 bits (137), Expect = 3e-06
Identities = 36/125 (28%), Positives = 59/125 (47%), Gaps = 4/125 (3%)
Frame = +2
Query: 197 KAGLQQDFCNLFDKLCQLGFSFNAWTYNICIHAFGSWGHLALALKLFKEMKSP----DIC 364
KA + C LF+K+ Q G + WTYNI I G LF +K D
Sbjct: 202 KARKVMEACQLFEKMVQDGVRASCWTYNILIDGLCKNGRAEAGYNLFCGLKKKGQFVDAV 261
Query: 365 SFNSVLHALCLAGRVQDAVEVFDEMKSSGFEPDRFTYRTLILGCCKAFRIDEALRVFREM 544
+++ V+ LC G +++A+ + +EM+ GF D T +L++ K R D R+ + +
Sbjct: 262 TYSIVVLLLCRKGHLEEALHLVEEMEERGFVVDLITITSLLIAFHKQGRWDCTERLMKHI 321
Query: 545 EYNNV 559
N+
Sbjct: 322 RDVNL 326
Score = 57.0 bits (136), Expect = 4e-06
Identities = 34/95 (35%), Positives = 50/95 (52%), Gaps = 4/95 (4%)
Frame = +2
Query: 272 TYNICIHAFGSWGHLALAL----KLFKEMKSPDICSFNSVLHALCLAGRVQDAVEVFDEM 439
TYN+ I G G LA KL K+ DI +N+++ AL AGR+ +A +F++M
Sbjct: 506 TYNLVIQGLGKMGRADLASSVLDKLMKQGGYLDIVMYNTLIDALGKAGRIDEANNLFEQM 565
Query: 440 KSSGFEPDRFTYRTLILGCCKAFRIDEALRVFREM 544
K SG PD TY +I K R+ +A + + M
Sbjct: 566 KISGLNPDVVTYNIMIEVHSKTGRLKDAYKFLKMM 600
>ref|XP_002515124.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis] gi|223545604|gb|EEF47108.1| pentatricopeptide
repeat-containing protein, putative [Ricinus communis]
Length = 898
Score = 179 bits (454), Expect = 5e-43
Identities = 83/178 (46%), Positives = 118/178 (66%), Gaps = 9/178 (5%)
Frame = +2
Query: 194 RKAGLQQDFCNLFDKLCQLGFSFNAWTYNICIHAFGSWGHLALALKLFKEMKS------- 352
RKA ++ +F +FDKL +GF + W YNICIHAFG W L AL+LFKEMK
Sbjct: 236 RKADMRVEFKKVFDKLKGMGFELDTWGYNICIHAFGCWSDLGTALRLFKEMKEKSKGFGS 295
Query: 353 --PDICSFNSVLHALCLAGRVQDAVEVFDEMKSSGFEPDRFTYRTLILGCCKAFRIDEAL 526
PD+C++NS++ LC +G+V+DA+ V++E+K SG EPD FTYR +I GC K++R+++A
Sbjct: 296 CCPDLCTYNSLIRLLCFSGKVKDALVVYEELKISGHEPDAFTYRIIIEGCSKSYRMNDAT 355
Query: 527 RVFREMEYNNVKCDTLVYNNIXXXXXXXXXXXXXCQMFDKMVSGGIGVSPYSYNILID 700
++F EM+YN DT VYN++ CQ+F+KMV G+ S ++YNILID
Sbjct: 356 KIFSEMQYNGFVPDTTVYNSLLDGMFKARKVTEACQLFEKMVQDGVRASSWTYNILID 413
Score = 63.2 bits (152), Expect = 5e-08
Identities = 41/116 (35%), Positives = 62/116 (53%), Gaps = 7/116 (6%)
Frame = +2
Query: 218 FCNLFDKLCQLGFSF---NAWTYNICIHAFGSWGHLALAL----KLFKEMKSPDICSFNS 376
F +D L Q+G + TYN+ I G G LA KL K+ DI +N+
Sbjct: 668 FSEAWDVLNQMGEKVCPSDIATYNLIIQGLGKMGRADLASSVLDKLMKQGGYLDIVMYNT 727
Query: 377 VLHALCLAGRVQDAVEVFDEMKSSGFEPDRFTYRTLILGCCKAFRIDEALRVFREM 544
+++AL AGR+ + ++F++MK+SG PD TY TLI KA R+ +A + + M
Sbjct: 728 LINALGKAGRIDEVRKLFEQMKTSGINPDVVTYNTLIEVHTKAGRLKDAYKFLKMM 783
Score = 62.4 bits (150), Expect = 9e-08
Identities = 37/127 (29%), Positives = 62/127 (48%), Gaps = 4/127 (3%)
Frame = +2
Query: 221 CNLFDKLCQLGFSFNAWTYNICIHAFGSWGHLALALKLFKEMKSP----DICSFNSVLHA 388
C LF+ +G + ++TYN + +F G+ + A + +M DI ++N ++
Sbjct: 637 CKLFEIFSDMGVNPVSYTYNSIMSSFVKKGYFSEAWDVLNQMGEKVCPSDIATYNLIIQG 696
Query: 389 LCLAGRVQDAVEVFDEMKSSGFEPDRFTYRTLILGCCKAFRIDEALRVFREMEYNNVKCD 568
L GR A V D++ G D Y TLI KA RIDE ++F +M+ + + D
Sbjct: 697 LGKMGRADLASSVLDKLMKQGGYLDIVMYNTLINALGKAGRIDEVRKLFEQMKTSGINPD 756
Query: 569 TLVYNNI 589
+ YN +
Sbjct: 757 VVTYNTL 763
Score = 60.1 bits (144), Expect = 4e-07
Identities = 35/125 (28%), Positives = 63/125 (50%), Gaps = 4/125 (3%)
Frame = +2
Query: 197 KAGLQQDFCNLFDKLCQLGFSFNAWTYNICIHAFGSWGHLALALKLFKEMKSP----DIC 364
KA + C LF+K+ Q G ++WTYNI I G A LF ++K D
Sbjct: 382 KARKVTEACQLFEKMVQDGVRASSWTYNILIDGLCKNGRSAAGYSLFCDLKKKGKFVDAI 441
Query: 365 SFNSVLHALCLAGRVQDAVEVFDEMKSSGFEPDRFTYRTLILGCCKAFRIDEALRVFREM 544
+++ ++ LC G++++A+ + +EM+ GF D T +L++ K R D ++ + +
Sbjct: 442 TYSIIVLLLCREGQLKEALSLVEEMEERGFVVDLVTITSLLIAFHKQGRWDWTEKLMKHV 501
Query: 545 EYNNV 559
N+
Sbjct: 502 RDGNL 506