BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Dioscorea21_contig00029049
         (317 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAC13599.1| similar to reverse transcriptase (Pfam: transcrip...   103   2e-20
emb|CAB72467.1| putative protein [Arabidopsis thaliana]               100   2e-19
gb|AAD12028.1| putative non-LTR retroelement reverse transcripta...    99   5e-19
ref|XP_002461653.1| hypothetical protein SORBIDRAFT_02g005970 [S...    97   1e-18
gb|ABF97084.1| retrotransposon protein, putative, unclassified [...    97   1e-18

>gb|AAC13599.1| similar to reverse transcriptase (Pfam: transcript_fact.hmm, score:
           72.31) [Arabidopsis thaliana]
          Length = 928

 Score =  103 bits (256), Expect = 2e-20
 Identities = 50/104 (48%), Positives = 66/104 (63%)
 Frame = +2

Query: 5   LTRPVSKDEIYLTLTSLPDGKTPGPDGMNVEFYKFFWNDIEMHLVPAINYFFRFAVMPRA 184
           LT  VS +EI+  + S+P+ K+PGPDG   EFYK  WN I    + AI  FF    +P+ 
Sbjct: 337 LTNHVSAEEIHKVVFSMPNDKSPGPDGYTAEFYKGAWNIIGAEFILAIQSFFAKGFLPKG 396

Query: 185 WGRTYITLIPKKDHPKLASEFRPISLCNVAYKIITKILANRIKL 316
              T + LIPKK   K   ++RPIS CNV YK+I+KI+ANR+KL
Sbjct: 397 INSTILALIPKKKEAKEMKDYRPISCCNVLYKVISKIIANRLKL 440


>emb|CAB72467.1| putative protein [Arabidopsis thaliana]
          Length = 762

 Score =  100 bits (248), Expect = 2e-19
 Identities = 50/104 (48%), Positives = 65/104 (62%)
 Frame = +2

Query: 5   LTRPVSKDEIYLTLTSLPDGKTPGPDGMNVEFYKFFWNDIEMHLVPAINYFFRFAVMPRA 184
           LTR VS +EI   L S+P+ K+PGPDG   EF+K  W  +    + AI  FF    +P+ 
Sbjct: 2   LTRVVSAEEIKKVLFSMPNDKSPGPDGFTSEFFKESWEILGPEFILAIQSFFALGFLPKG 61

Query: 185 WGRTYITLIPKKDHPKLASEFRPISLCNVAYKIITKILANRIKL 316
              T + LIPKK   K   ++RPIS CNV YK+I+KILANR+KL
Sbjct: 62  VNSTILALIPKKLESKEMKDYRPISCCNVMYKVISKILANRLKL 105


>gb|AAD12028.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1447

 Score = 98.6 bits (244), Expect = 5e-19
 Identities = 48/104 (46%), Positives = 65/104 (62%)
 Frame = +2

Query: 5    LTRPVSKDEIYLTLTSLPDGKTPGPDGMNVEFYKFFWNDIEMHLVPAINYFFRFAVMPRA 184
            LTR V+ +EI   L S+P+ K+PGPDG   EF+K  W  +    + AI  FF    +P+ 
Sbjct: 857  LTRVVTAEEIKKVLFSMPNDKSPGPDGFTSEFFKATWEILGNEFILAIQSFFAKGFLPKG 916

Query: 185  WGRTYITLIPKKDHPKLASEFRPISLCNVAYKIITKILANRIKL 316
               T + LIPKK   K   ++RPIS CNV YK+I+KI+ANR+KL
Sbjct: 917  INTTILALIPKKKEAKEMKDYRPISCCNVIYKVISKIIANRLKL 960


>ref|XP_002461653.1| hypothetical protein SORBIDRAFT_02g005970 [Sorghum bicolor]
           gi|241925030|gb|EER98174.1| hypothetical protein
           SORBIDRAFT_02g005970 [Sorghum bicolor]
          Length = 172

 Score = 97.4 bits (241), Expect = 1e-18
 Identities = 47/103 (45%), Positives = 65/103 (63%)
 Frame = +2

Query: 5   LTRPVSKDEIYLTLTSLPDGKTPGPDGMNVEFYKFFWNDIEMHLVPAINYFFRFAVMPRA 184
           L  P S++E+   L S+ D K PG DG++  FYK FWN +   LV  +      A +P  
Sbjct: 5   LNAPFSREEVQKALFSIGDLKAPGQDGLHAIFYKRFWNMLGDDLVVQVLGAVNSATIPSG 64

Query: 185 WGRTYITLIPKKDHPKLASEFRPISLCNVAYKIITKILANRIK 313
           W  T I +IPK ++P   ++FRPISLCNV YK+I+K+LANR+K
Sbjct: 65  WNDTMIVMIPKVENPDKVAQFRPISLCNVVYKVISKMLANRMK 107


>gb|ABF97084.1| retrotransposon protein, putative, unclassified [Oryza sativa
           Japonica Group]
          Length = 1184

 Score = 97.4 bits (241), Expect = 1e-18
 Identities = 47/103 (45%), Positives = 64/103 (62%)
 Frame = +2

Query: 5   LTRPVSKDEIYLTLTSLPDGKTPGPDGMNVEFYKFFWNDIEMHLVPAINYFFRFAVMPRA 184
           L  P + +E+   L S+ D K PGPDG++  FYK FW+ +E  LV  +        +P  
Sbjct: 287 LLAPYTAEEVKNALFSIGDLKAPGPDGLHAVFYKRFWDMLESDLVKEVLDAINTMKIPDG 346

Query: 185 WGRTYITLIPKKDHPKLASEFRPISLCNVAYKIITKILANRIK 313
           W  T + +IPK D P   ++FRPISLCNV YKII+K+LANR+K
Sbjct: 347 WNDTTVVMIPKVDKPDRVTQFRPISLCNVVYKIISKMLANRLK 389