BLASTX nr result
ID: Dioscorea21_contig00027898
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dioscorea21_contig00027898
(986 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|ACL30982.1| mutant DNA dependent RNA polymerase D largest sub... 372 e-101
gb|ACL30980.1| mutant DNA dependent RNA polymerase D largest sub... 372 e-101
ref|NP_001182824.1| DNA dependent RNA polymerase D largest subun... 372 e-101
ref|XP_003566523.1| PREDICTED: DNA-directed RNA polymerase D sub... 356 4e-96
ref|XP_002275898.2| PREDICTED: LOW QUALITY PROTEIN: DNA-directed... 346 4e-93
>gb|ACL30982.1| mutant DNA dependent RNA polymerase D largest subunit rpd1-8 [Zea
mays]
Length = 1444
Score = 372 bits (956), Expect = e-101
Identities = 180/317 (56%), Positives = 245/317 (77%), Gaps = 1/317 (0%)
Frame = +1
Query: 1 RLVFDERTKAFKRLSDLNRKFDECQHNQEFGVLPSTHVTSRVLDCLNMSRLHTHQSLIED 180
RL FD+RTKA+KR+ D++R+ D+ + + F VL S+ V+SRV +CL S+L++ ++ E
Sbjct: 258 RLTFDDRTKAYKRMVDVSRRIDDYRQHPHFSVLASSLVSSRVSECLKSSKLYSKKADGET 317
Query: 181 SSPSSKSGLRWLKEIFLSKRTDNAFRMTVVGDPKLRLDEIGVPWDIAENMLICEHVNAYN 360
S+ + G++WLK++ LSKR+DN FR +VGDPK++L EIG+P D++ ++++ EHV++YN
Sbjct: 318 STDTY--GMKWLKDVVLSKRSDNVFRSIMVGDPKIKLWEIGIPEDLSSSLVVSEHVSSYN 375
Query: 361 LQKLNRIFTMQLLSKEQIYVRRKGKLVHLRKANQLQVGDTFYRPLEDGDVVLINRNPSVH 540
Q N + LL+K+++++RR GKL+ LRKA+QL++GD YRPL+DGD++LINR PSVH
Sbjct: 376 FQSTNLKCNLHLLAKQELFIRRNGKLMFLRKADQLEIGDIAYRPLQDGDIILINRPPSVH 435
Query: 541 QHSLIAFSVKVLPSQSVFSINPLCCAPFNGDFDGDCLHGFVPQSLRCRVELGQLVALDCQ 720
QHSLIA S K+LP SV SINPLCC PF GDFDGDCLHG++PQS+R RVEL +LV+L Q
Sbjct: 436 QHSLIALSAKILPIHSVVSINPLCCTPFAGDFDGDCLHGYIPQSIRSRVELEELVSLHNQ 495
Query: 721 LLNSQDGRSLLSLTHDSLTAAHLITGQDRVIFFNKFEMQQLAMLC-PYPLPLPAILKAPG 897
LLN QDGR+L+SLTHDSL AAHL+T D +F K E+QQL MLC P PA++K+
Sbjct: 496 LLNMQDGRNLVSLTHDSLAAAHLLTSTD--VFLKKSELQQLQMLCLSVSTPAPAVIKSMN 553
Query: 898 FQGPLWTGQQLFSMLLP 948
FQG LWTG+QLFSMLLP
Sbjct: 554 FQGSLWTGKQLFSMLLP 570
>gb|ACL30980.1| mutant DNA dependent RNA polymerase D largest subunit rpd1-1 [Zea
mays]
Length = 871
Score = 372 bits (956), Expect = e-101
Identities = 180/317 (56%), Positives = 245/317 (77%), Gaps = 1/317 (0%)
Frame = +1
Query: 1 RLVFDERTKAFKRLSDLNRKFDECQHNQEFGVLPSTHVTSRVLDCLNMSRLHTHQSLIED 180
RL FD+RTKA+KR+ D++R+ D+ + + F VL S+ V+SRV +CL S+L++ ++ E
Sbjct: 258 RLTFDDRTKAYKRMVDVSRRIDDYRQHPHFSVLASSLVSSRVSECLKSSKLYSKKADGET 317
Query: 181 SSPSSKSGLRWLKEIFLSKRTDNAFRMTVVGDPKLRLDEIGVPWDIAENMLICEHVNAYN 360
S+ + G++WLK++ LSKR+DN FR +VGDPK++L EIG+P D++ ++++ EHV++YN
Sbjct: 318 STDTY--GMKWLKDVVLSKRSDNVFRSIMVGDPKIKLWEIGIPEDLSSSLVVSEHVSSYN 375
Query: 361 LQKLNRIFTMQLLSKEQIYVRRKGKLVHLRKANQLQVGDTFYRPLEDGDVVLINRNPSVH 540
Q N + LL+K+++++RR GKL+ LRKA+QL++GD YRPL+DGD++LINR PSVH
Sbjct: 376 FQSTNLKCNLHLLAKQELFIRRNGKLMFLRKADQLEIGDIAYRPLQDGDIILINRPPSVH 435
Query: 541 QHSLIAFSVKVLPSQSVFSINPLCCAPFNGDFDGDCLHGFVPQSLRCRVELGQLVALDCQ 720
QHSLIA S K+LP SV SINPLCC PF GDFDGDCLHG++PQS+R RVEL +LV+L Q
Sbjct: 436 QHSLIALSAKILPIHSVVSINPLCCTPFAGDFDGDCLHGYIPQSIRSRVELEELVSLHNQ 495
Query: 721 LLNSQDGRSLLSLTHDSLTAAHLITGQDRVIFFNKFEMQQLAMLC-PYPLPLPAILKAPG 897
LLN QDGR+L+SLTHDSL AAHL+T D +F K E+QQL MLC P PA++K+
Sbjct: 496 LLNMQDGRNLVSLTHDSLAAAHLLTSTD--VFLKKSELQQLQMLCLSVSTPAPAVIKSMN 553
Query: 898 FQGPLWTGQQLFSMLLP 948
FQG LWTG+QLFSMLLP
Sbjct: 554 FQGSLWTGKQLFSMLLP 570
>ref|NP_001182824.1| DNA dependent RNA polymerase D largest subunit [Zea mays]
gi|219662980|gb|ACL30979.1| DNA dependent RNA polymerase
D largest subunit [Zea mays] gi|414869425|tpg|DAA47982.1|
TPA: putative DNA dependent RNA polymerase D largest
subunit family protein [Zea mays]
gi|414869426|tpg|DAA47983.1| TPA: putative DNA dependent
RNA polymerase D largest subunit family protein [Zea
mays]
Length = 1444
Score = 372 bits (956), Expect = e-101
Identities = 180/317 (56%), Positives = 245/317 (77%), Gaps = 1/317 (0%)
Frame = +1
Query: 1 RLVFDERTKAFKRLSDLNRKFDECQHNQEFGVLPSTHVTSRVLDCLNMSRLHTHQSLIED 180
RL FD+RTKA+KR+ D++R+ D+ + + F VL S+ V+SRV +CL S+L++ ++ E
Sbjct: 258 RLTFDDRTKAYKRMVDVSRRIDDYRQHPHFSVLASSLVSSRVSECLKSSKLYSKKADGET 317
Query: 181 SSPSSKSGLRWLKEIFLSKRTDNAFRMTVVGDPKLRLDEIGVPWDIAENMLICEHVNAYN 360
S+ + G++WLK++ LSKR+DN FR +VGDPK++L EIG+P D++ ++++ EHV++YN
Sbjct: 318 STDTY--GMKWLKDVVLSKRSDNVFRSIMVGDPKIKLWEIGIPEDLSSSLVVSEHVSSYN 375
Query: 361 LQKLNRIFTMQLLSKEQIYVRRKGKLVHLRKANQLQVGDTFYRPLEDGDVVLINRNPSVH 540
Q N + LL+K+++++RR GKL+ LRKA+QL++GD YRPL+DGD++LINR PSVH
Sbjct: 376 FQSTNLKCNLHLLAKQELFIRRNGKLMFLRKADQLEIGDIAYRPLQDGDIILINRPPSVH 435
Query: 541 QHSLIAFSVKVLPSQSVFSINPLCCAPFNGDFDGDCLHGFVPQSLRCRVELGQLVALDCQ 720
QHSLIA S K+LP SV SINPLCC PF GDFDGDCLHG++PQS+R RVEL +LV+L Q
Sbjct: 436 QHSLIALSAKILPIHSVVSINPLCCTPFAGDFDGDCLHGYIPQSIRSRVELEELVSLHNQ 495
Query: 721 LLNSQDGRSLLSLTHDSLTAAHLITGQDRVIFFNKFEMQQLAMLC-PYPLPLPAILKAPG 897
LLN QDGR+L+SLTHDSL AAHL+T D +F K E+QQL MLC P PA++K+
Sbjct: 496 LLNMQDGRNLVSLTHDSLAAAHLLTSTD--VFLKKSELQQLQMLCLSVSTPAPAVIKSMN 553
Query: 898 FQGPLWTGQQLFSMLLP 948
FQG LWTG+QLFSMLLP
Sbjct: 554 FQGSLWTGKQLFSMLLP 570
>ref|XP_003566523.1| PREDICTED: DNA-directed RNA polymerase D subunit 1-like [Brachypodium
distachyon]
Length = 1470
Score = 356 bits (914), Expect = 4e-96
Identities = 179/325 (55%), Positives = 238/325 (73%), Gaps = 10/325 (3%)
Frame = +1
Query: 4 LVFDERTKAFKRLSDLNRKFDECQHNQEFGVLPSTHVTSRVLDCLNMSRLHTHQSLIEDS 183
L +D+RTKA+KR D ++K D+ + + +F VL S+ VTSRV++CL S+L++ ++ E S
Sbjct: 260 LAYDDRTKAYKRTVDASKKIDDYRQHPQFSVLASSFVTSRVMECLQSSKLYSKKTDKESS 319
Query: 184 SPS--------SKSGLRWLKEIFLSKRTDNAFRMTVVGDPKLRLDEIGVPWDIAENMLIC 339
+ S G +WLK+ LSKR+D AFR +VGDPK+RL EIG+P D+A+ + +
Sbjct: 320 TDSYGTSVKKNDSYGTKWLKDAILSKRSDYAFRSIMVGDPKIRLHEIGIPMDLAD-LFVP 378
Query: 340 EHVNAYNLQKLNRIFTMQLLSKEQIYVRRKGKLVHLRKANQLQVGDTFYRPLEDGDVVLI 519
EHV+ YN + +N + LL+KE + RR GKL+++RK NQL++GD YRPL+DGD++L+
Sbjct: 379 EHVSIYNFKSINLKCNLHLLAKELLIARRNGKLIYVRKENQLEIGDIVYRPLQDGDLILV 438
Query: 520 NRNPSVHQHSLIAFSVKVLPSQSVFSINPLCCAPFNGDFDGDCLHGFVPQSLRCRVELGQ 699
NR PSVHQHSLIA S K+LP QSV +INPL CAP +GDFDGDCLHG+VPQS+ RVELG+
Sbjct: 439 NRPPSVHQHSLIALSAKLLPVQSVVAINPLNCAPLSGDFDGDCLHGYVPQSIGSRVELGE 498
Query: 700 LVALDCQLLNSQDGRSLLSLTHDSLTAAHLITGQDRVIFFNKFEMQQLAMLCP--YPLPL 873
LV+L QLLN QDGRSL+SLTHDSL AAHL+T + NK E QQL MLC P P+
Sbjct: 499 LVSLSHQLLNMQDGRSLVSLTHDSLAAAHLLTSSG--VLLNKTEFQQLQMLCVSLSPTPV 556
Query: 874 PAILKAPGFQGPLWTGQQLFSMLLP 948
P+++K+ QGPLWTG+QLF MLLP
Sbjct: 557 PSVIKSINPQGPLWTGKQLFGMLLP 581
>ref|XP_002275898.2| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase D subunit
1-like [Vitis vinifera]
Length = 1560
Score = 346 bits (888), Expect = 4e-93
Identities = 175/315 (55%), Positives = 226/315 (71%)
Frame = +1
Query: 4 LVFDERTKAFKRLSDLNRKFDECQHNQEFGVLPSTHVTSRVLDCLNMSRLHTHQSLIEDS 183
L+FD+ ++A+K+L D +E ++ RVLDCL S+L + +S +DS
Sbjct: 288 LIFDQHSRAYKKLVDFRGTANE--------------LSCRVLDCLKTSKLRSEKSTSKDS 333
Query: 184 SPSSKSGLRWLKEIFLSKRTDNAFRMTVVGDPKLRLDEIGVPWDIAENMLICEHVNAYNL 363
+ S SGL+W+KE+ L KRT+++FRM VVGDPKLRL EIG+P IAE +LI EH+N++N
Sbjct: 334 A-SKMSGLKWIKEVLLGKRTNHSFRMIVVGDPKLRLSEIGIPCHIAEELLISEHLNSWNW 392
Query: 364 QKLNRIFTMQLLSKEQIYVRRKGKLVHLRKANQLQVGDTFYRPLEDGDVVLINRNPSVHQ 543
+K+ ++LL K Q YVRRKG L +R+ N Q GD YRPL DGD+VLINR PS+HQ
Sbjct: 393 EKVTNGCNLRLLEKGQTYVRRKGTLAPVRRMNDFQAGDIIYRPLTDGDIVLINRPPSIHQ 452
Query: 544 HSLIAFSVKVLPSQSVFSINPLCCAPFNGDFDGDCLHGFVPQSLRCRVELGQLVALDCQL 723
HS+IA SVKVLP SV SINPLCC+PF GDFDGDCLHG++PQS+ RVEL +LVAL+ QL
Sbjct: 453 HSVIALSVKVLPLNSVVSINPLCCSPFRGDFDGDCLHGYIPQSVDSRVELSELVALNRQL 512
Query: 724 LNSQDGRSLLSLTHDSLTAAHLITGQDRVIFFNKFEMQQLAMLCPYPLPLPAILKAPGFQ 903
+N Q GR+LLSL+ DSL+AAHL+ + + N F+MQQL M CPY L PAI+KAP
Sbjct: 513 INRQSGRNLLSLSQDSLSAAHLV--MEDGVLLNLFQMQQLEMFCPYQLQSPAIIKAPLLD 570
Query: 904 GPLWTGQQLFSMLLP 948
+WTG+QLFSMLLP
Sbjct: 571 TQVWTGKQLFSMLLP 585