BLASTX nr result
ID: Dioscorea21_contig00027825
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dioscorea21_contig00027825
(596 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AFW71551.1| putative DNA polymerase epsilon catalytic subunit... 285 5e-75
gb|AFW71549.1| putative DNA polymerase epsilon catalytic subunit... 285 5e-75
ref|XP_002452153.1| hypothetical protein SORBIDRAFT_04g020730 [S... 283 2e-74
ref|XP_002269920.2| PREDICTED: DNA polymerase epsilon catalytic ... 282 3e-74
emb|CBI17056.3| unnamed protein product [Vitis vinifera] 280 2e-73
>gb|AFW71551.1| putative DNA polymerase epsilon catalytic subunit family protein [Zea
mays]
Length = 1717
Score = 285 bits (728), Expect = 5e-75
Identities = 138/200 (69%), Positives = 160/200 (80%), Gaps = 4/200 (2%)
Frame = -2
Query: 589 LSSRHGQ----DSSGLVTLFRKREMALIRSHWQIIQILSSTQPGCYFAWVVADGSMFKVP 422
LS+RH +S T F+K+E+AL RSHWQIIQ+ SST PG +FAWVVA+G MFK+P
Sbjct: 805 LSARHANQLPVNSRNRSTFFQKQELALFRSHWQIIQLASSTVPGHFFAWVVAEGIMFKIP 864
Query: 421 IKVPRVFYLNSKAPITEEFPGRLVNKILPHNKPNFNLIEVAIDEDQFRAESKKLAIHLAD 242
I VPR FYLNSKAP+TEEFPGR V KILPH +P FNLIEV E+QFRAE KKLA HLA+
Sbjct: 865 INVPRTFYLNSKAPVTEEFPGRRVKKILPHGRPCFNLIEVVTTEEQFRAEGKKLAAHLAE 924
Query: 241 PEVEGIYETKLSLEFNAILHIGCVCKVDKTAKFRNTQEGWALNELHMKTTAECSYLERNV 62
P+VEGIYETK+ E NA+L IGCVCKVDK+AK R+ Q+GW L EL MKTTAECSYLE+
Sbjct: 925 PDVEGIYETKIPPELNAVLQIGCVCKVDKSAKRRSIQDGWDLAELQMKTTAECSYLEQTF 984
Query: 61 SFFYLYHSLSDGRALYAIYF 2
SFFYLYHSLS+GRA+Y YF
Sbjct: 985 SFFYLYHSLSEGRAVYVFYF 1004
>gb|AFW71549.1| putative DNA polymerase epsilon catalytic subunit family protein [Zea
mays]
Length = 1856
Score = 285 bits (728), Expect = 5e-75
Identities = 138/200 (69%), Positives = 160/200 (80%), Gaps = 4/200 (2%)
Frame = -2
Query: 589 LSSRHGQ----DSSGLVTLFRKREMALIRSHWQIIQILSSTQPGCYFAWVVADGSMFKVP 422
LS+RH +S T F+K+E+AL RSHWQIIQ+ SST PG +FAWVVA+G MFK+P
Sbjct: 944 LSARHANQLPVNSRNRSTFFQKQELALFRSHWQIIQLASSTVPGHFFAWVVAEGIMFKIP 1003
Query: 421 IKVPRVFYLNSKAPITEEFPGRLVNKILPHNKPNFNLIEVAIDEDQFRAESKKLAIHLAD 242
I VPR FYLNSKAP+TEEFPGR V KILPH +P FNLIEV E+QFRAE KKLA HLA+
Sbjct: 1004 INVPRTFYLNSKAPVTEEFPGRRVKKILPHGRPCFNLIEVVTTEEQFRAEGKKLAAHLAE 1063
Query: 241 PEVEGIYETKLSLEFNAILHIGCVCKVDKTAKFRNTQEGWALNELHMKTTAECSYLERNV 62
P+VEGIYETK+ E NA+L IGCVCKVDK+AK R+ Q+GW L EL MKTTAECSYLE+
Sbjct: 1064 PDVEGIYETKIPPELNAVLQIGCVCKVDKSAKRRSIQDGWDLAELQMKTTAECSYLEQTF 1123
Query: 61 SFFYLYHSLSDGRALYAIYF 2
SFFYLYHSLS+GRA+Y YF
Sbjct: 1124 SFFYLYHSLSEGRAVYVFYF 1143
>ref|XP_002452153.1| hypothetical protein SORBIDRAFT_04g020730 [Sorghum bicolor]
gi|241931984|gb|EES05129.1| hypothetical protein
SORBIDRAFT_04g020730 [Sorghum bicolor]
Length = 2135
Score = 283 bits (723), Expect = 2e-74
Identities = 136/200 (68%), Positives = 160/200 (80%), Gaps = 4/200 (2%)
Frame = -2
Query: 589 LSSRHGQ----DSSGLVTLFRKREMALIRSHWQIIQILSSTQPGCYFAWVVADGSMFKVP 422
LS+RH +S T F+K+E+AL RSHWQIIQ+ SST PG +FAWVVA+G MFK+P
Sbjct: 1221 LSARHANQLPGNSRNRSTFFQKQELALFRSHWQIIQLASSTVPGHFFAWVVAEGIMFKIP 1280
Query: 421 IKVPRVFYLNSKAPITEEFPGRLVNKILPHNKPNFNLIEVAIDEDQFRAESKKLAIHLAD 242
I VPR FYLNSKAP+TEEFPGR V KILPH +P FNLIEV E+QFRAE KKLA HLA+
Sbjct: 1281 INVPRTFYLNSKAPVTEEFPGRRVKKILPHGRPCFNLIEVVTTEEQFRAEGKKLAAHLAE 1340
Query: 241 PEVEGIYETKLSLEFNAILHIGCVCKVDKTAKFRNTQEGWALNELHMKTTAECSYLERNV 62
P+VEGIYETK+ + NA+L IGCVCKVDK+AK R+ Q+GW L EL MKTTAECSYLE+ V
Sbjct: 1341 PDVEGIYETKIPPDLNAVLQIGCVCKVDKSAKKRSIQDGWDLAELQMKTTAECSYLEQTV 1400
Query: 61 SFFYLYHSLSDGRALYAIYF 2
SFFYLYHS ++GRA+Y YF
Sbjct: 1401 SFFYLYHSFNEGRAVYVFYF 1420
>ref|XP_002269920.2| PREDICTED: DNA polymerase epsilon catalytic subunit A [Vitis
vinifera]
Length = 2214
Score = 282 bits (722), Expect = 3e-74
Identities = 131/196 (66%), Positives = 161/196 (82%)
Frame = -2
Query: 589 LSSRHGQDSSGLVTLFRKREMALIRSHWQIIQILSSTQPGCYFAWVVADGSMFKVPIKVP 410
++ + Q +G+ + FR+ E+AL S+WQIIQ+ S+Q G +FAWV+ +G M K+PI VP
Sbjct: 1298 INHKQAQGRTGVNSYFRRHELALTHSYWQIIQLAPSSQHGQFFAWVIVEGVMLKIPITVP 1357
Query: 409 RVFYLNSKAPITEEFPGRLVNKILPHNKPNFNLIEVAIDEDQFRAESKKLAIHLADPEVE 230
RVFYLNSKA ITEEFPGR VNK LPH ++NLIE+ IDEDQFR ES+KLA HLADPEVE
Sbjct: 1358 RVFYLNSKALITEEFPGRRVNKTLPHGHHSYNLIEIIIDEDQFRGESRKLAAHLADPEVE 1417
Query: 229 GIYETKLSLEFNAILHIGCVCKVDKTAKFRNTQEGWALNELHMKTTAECSYLERNVSFFY 50
GIYETK+ LEFNA+L IGCVCKVDKTAK RN Q+GW+L+ELHMKTT EC YLE+++SFFY
Sbjct: 1418 GIYETKVPLEFNAVLQIGCVCKVDKTAKKRNIQDGWSLSELHMKTTTECPYLEQSISFFY 1477
Query: 49 LYHSLSDGRALYAIYF 2
LYHS+S+GRA+Y YF
Sbjct: 1478 LYHSISEGRAIYVGYF 1493
>emb|CBI17056.3| unnamed protein product [Vitis vinifera]
Length = 2723
Score = 280 bits (715), Expect = 2e-73
Identities = 130/187 (69%), Positives = 157/187 (83%)
Frame = -2
Query: 562 SGLVTLFRKREMALIRSHWQIIQILSSTQPGCYFAWVVADGSMFKVPIKVPRVFYLNSKA 383
+G+ + FR+ E+AL S+WQIIQ+ S+Q G +FAWV+ +G M K+PI VPRVFYLNSKA
Sbjct: 1713 TGVNSYFRRHELALTHSYWQIIQLAPSSQHGQFFAWVIVEGVMLKIPITVPRVFYLNSKA 1772
Query: 382 PITEEFPGRLVNKILPHNKPNFNLIEVAIDEDQFRAESKKLAIHLADPEVEGIYETKLSL 203
ITEEFPGR VNK LPH ++NLIE+ IDEDQFR ES+KLA HLADPEVEGIYETK+ L
Sbjct: 1773 LITEEFPGRRVNKTLPHGHHSYNLIEIIIDEDQFRGESRKLAAHLADPEVEGIYETKVPL 1832
Query: 202 EFNAILHIGCVCKVDKTAKFRNTQEGWALNELHMKTTAECSYLERNVSFFYLYHSLSDGR 23
EFNA+L IGCVCKVDKTAK RN Q+GW+L+ELHMKTT EC YLE+++SFFYLYHS+S+GR
Sbjct: 1833 EFNAVLQIGCVCKVDKTAKKRNIQDGWSLSELHMKTTTECPYLEQSISFFYLYHSISEGR 1892
Query: 22 ALYAIYF 2
A+Y YF
Sbjct: 1893 AIYVGYF 1899