BLASTX nr result

ID: Dioscorea21_contig00027661 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Dioscorea21_contig00027661
         (304 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_001169115.1| uncharacterized protein LOC100382959 [Zea ma...   105   5e-21
ref|XP_002461004.1| hypothetical protein SORBIDRAFT_02g039025 [S...   102   2e-20
ref|XP_003575643.1| PREDICTED: glycine-rich RNA-binding protein ...   101   7e-20
ref|XP_002877450.1| hypothetical protein ARALYDRAFT_905782 [Arab...   100   2e-19
ref|XP_004159670.1| PREDICTED: cold-inducible RNA-binding protei...    99   3e-19

>ref|NP_001169115.1| uncharacterized protein LOC100382959 [Zea mays]
           gi|223975005|gb|ACN31690.1| unknown [Zea mays]
           gi|414887554|tpg|DAA63568.1| TPA: hypothetical protein
           ZEAMMB73_633512 [Zea mays]
          Length = 103

 Score =  105 bits (261), Expect = 5e-21
 Identities = 50/81 (61%), Positives = 66/81 (81%)
 Frame = +3

Query: 3   SEIFVSRLSYYITDGEFKKAFSPFGDIKEVRLIRDGTTKRPKGYGFIAYASEAEAMRAVE 182
           +EIFVSRLS+Y T+ EFK  FSPFG ++E RL+RD  T R KG+GF+ Y+S+AEA +AV+
Sbjct: 21  TEIFVSRLSFYTTEEEFKDIFSPFGTVEEARLMRDHQTGRMKGFGFVKYSSQAEAEKAVK 80

Query: 183 AMDGRIFGGRLIFVELAKHNQ 245
           AMDG+I  GRLIFVE+AK ++
Sbjct: 81  AMDGKILRGRLIFVEMAKGHE 101


>ref|XP_002461004.1| hypothetical protein SORBIDRAFT_02g039025 [Sorghum bicolor]
           gi|241924381|gb|EER97525.1| hypothetical protein
           SORBIDRAFT_02g039025 [Sorghum bicolor]
          Length = 83

 Score =  102 bits (255), Expect = 2e-20
 Identities = 50/78 (64%), Positives = 63/78 (80%)
 Frame = +3

Query: 3   SEIFVSRLSYYITDGEFKKAFSPFGDIKEVRLIRDGTTKRPKGYGFIAYASEAEAMRAVE 182
           +EIFVSRLS+Y T+ EFK  FS FG ++E RL+RD  T R KG+GF+ Y+S+AEA +AV+
Sbjct: 6   TEIFVSRLSFYTTEEEFKDVFSSFGTVEEARLMRDQQTGRIKGFGFVKYSSQAEAEKAVK 65

Query: 183 AMDGRIFGGRLIFVELAK 236
           AMDGRI  GRLIFVE+AK
Sbjct: 66  AMDGRILRGRLIFVEMAK 83


>ref|XP_003575643.1| PREDICTED: glycine-rich RNA-binding protein 2, mitochondrial-like
           [Brachypodium distachyon]
          Length = 108

 Score =  101 bits (251), Expect = 7e-20
 Identities = 48/78 (61%), Positives = 61/78 (78%)
 Frame = +3

Query: 3   SEIFVSRLSYYITDGEFKKAFSPFGDIKEVRLIRDGTTKRPKGYGFIAYASEAEAMRAVE 182
           +EIFVS+LS+Y T+ E K  FSPFG I+E RL+RD  T RPKG+GF+ Y+S+  A +AV+
Sbjct: 26  TEIFVSKLSFYTTEEELKNIFSPFGAIEEARLMRDNQTGRPKGFGFVKYSSQVAAEKAVK 85

Query: 183 AMDGRIFGGRLIFVELAK 236
           AMDGRI  GR+IFVE AK
Sbjct: 86  AMDGRIIRGRIIFVETAK 103


>ref|XP_002877450.1| hypothetical protein ARALYDRAFT_905782 [Arabidopsis lyrata subsp.
           lyrata] gi|297323288|gb|EFH53709.1| hypothetical protein
           ARALYDRAFT_905782 [Arabidopsis lyrata subsp. lyrata]
          Length = 102

 Score = 99.8 bits (247), Expect = 2e-19
 Identities = 46/81 (56%), Positives = 64/81 (79%)
 Frame = +3

Query: 3   SEIFVSRLSYYITDGEFKKAFSPFGDIKEVRLIRDGTTKRPKGYGFIAYASEAEAMRAVE 182
           +++FVSRLS Y TD   ++ FSPFG IKE RLIRD  T+RPKG+GFI + SE +A +A++
Sbjct: 7   AQLFVSRLSAYTTDQSLRQLFSPFGQIKEARLIRDSETQRPKGFGFITFESEDDARKALK 66

Query: 183 AMDGRIFGGRLIFVELAKHNQ 245
           ++DG+I  GRLIFVE+AK ++
Sbjct: 67  SLDGKIVEGRLIFVEVAKSSE 87


>ref|XP_004159670.1| PREDICTED: cold-inducible RNA-binding protein B-like [Cucumis
           sativus]
          Length = 95

 Score = 99.4 bits (246), Expect = 3e-19
 Identities = 49/78 (62%), Positives = 58/78 (74%)
 Frame = +3

Query: 3   SEIFVSRLSYYITDGEFKKAFSPFGDIKEVRLIRDGTTKRPKGYGFIAYASEAEAMRAVE 182
           SE+F+SRLS Y T    K  FSPFG I E RLIRD  T+RPKG+GF+ + S AEA +A++
Sbjct: 7   SELFISRLSSYTTLERLKNLFSPFGSISEARLIRDPKTERPKGFGFVTFQSPAEAKKALK 66

Query: 183 AMDGRIFGGRLIFVELAK 236
           AMDGRI  GRLIFVE AK
Sbjct: 67  AMDGRIVDGRLIFVEFAK 84


Top