BLASTX nr result

ID: Dioscorea21_contig00025879 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Dioscorea21_contig00025879
         (511 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003566429.1| PREDICTED: putative pentatricopeptide repeat...   130   1e-28
ref|XP_002462633.1| hypothetical protein SORBIDRAFT_02g029280 [S...   122   4e-26
ref|NP_001054898.2| Os05g0207200 [Oryza sativa Japonica Group] g...   122   4e-26
gb|AAU90184.1| unkonwn protein [Oryza sativa Japonica Group] gi|...   122   4e-26
ref|XP_002283237.1| PREDICTED: putative pentatricopeptide repeat...   112   4e-23

>ref|XP_003566429.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g53330-like [Brachypodium distachyon]
          Length = 461

 Score =  130 bits (327), Expect = 1e-28
 Identities = 62/114 (54%), Positives = 79/114 (69%)
 Frame = +1

Query: 4   RWRDALDLFEDMPRRECRPDVVSYRTLLDGLCESGEFGEAMAILDEMMFKGFVPGAGSVR 183
           RWRDA +L EDMPRR C PDVV+YR L DG+C  GEF EA  +LDEM+FKGF P    V+
Sbjct: 342 RWRDANELVEDMPRRGCSPDVVTYRMLFDGMCAVGEFHEANQVLDEMVFKGFAPSKDGVK 401

Query: 184 RFVKGLDCEGGTMSFRAALCGLAKQNAVESDVWEMVVGNMLKESSLMNVGKLVN 345
           RFV+G++ EG  +   +ALC LAK NA+ES  WE  VG +L E + + + K +N
Sbjct: 402 RFVQGIEIEGDVVLLESALCRLAKVNALESSGWEKAVGGVLHEPAELMLDKQLN 455


>ref|XP_002462633.1| hypothetical protein SORBIDRAFT_02g029280 [Sorghum bicolor]
           gi|241926010|gb|EER99154.1| hypothetical protein
           SORBIDRAFT_02g029280 [Sorghum bicolor]
          Length = 466

 Score =  122 bits (305), Expect = 4e-26
 Identities = 57/116 (49%), Positives = 78/116 (67%)
 Frame = +1

Query: 4   RWRDALDLFEDMPRRECRPDVVSYRTLLDGLCESGEFGEAMAILDEMMFKGFVPGAGSVR 183
           RWRDA +L EDMPRR C PDVV+YR L DG+C +GEF EA  +LDEM+FKGF P     +
Sbjct: 341 RWRDASELVEDMPRRGCHPDVVTYRMLFDGMCAAGEFLEANQVLDEMVFKGFAPSKDGAQ 400

Query: 184 RFVKGLDCEGGTMSFRAALCGLAKQNAVESDVWEMVVGNMLKESSLMNVGKLVNHL 351
           +FV+G++ EG  +   + LC LAK NA+ S  WE  V  +L E++ + + K ++ L
Sbjct: 401 KFVEGIEREGDVVLLESVLCRLAKVNALVSSGWEKAVSGVLNEATELRLEKQLDSL 456


>ref|NP_001054898.2| Os05g0207200 [Oryza sativa Japonica Group]
           gi|218196267|gb|EEC78694.1| hypothetical protein
           OsI_18845 [Oryza sativa Indica Group]
           gi|222630569|gb|EEE62701.1| hypothetical protein
           OsJ_17504 [Oryza sativa Japonica Group]
           gi|255676129|dbj|BAF16812.2| Os05g0207200 [Oryza sativa
           Japonica Group]
          Length = 467

 Score =  122 bits (305), Expect = 4e-26
 Identities = 56/116 (48%), Positives = 77/116 (66%)
 Frame = +1

Query: 4   RWRDALDLFEDMPRRECRPDVVSYRTLLDGLCESGEFGEAMAILDEMMFKGFVPGAGSVR 183
           RWRDA +L EDMPRR CRPDVV+YR L DG+C++G F EA  + +EM+FKGF P    VR
Sbjct: 349 RWRDASELVEDMPRRGCRPDVVTYRRLFDGICDAGGFSEARRVFNEMVFKGFAPSKDGVR 408

Query: 184 RFVKGLDCEGGTMSFRAALCGLAKQNAVESDVWEMVVGNMLKESSLMNVGKLVNHL 351
           +FV  ++ EG   S  + LC LA  NA+ES  WE  +  +L + +   + KL+++L
Sbjct: 409 KFVAWIEREGDAASLESVLCQLASVNALESSEWEKAMSGVLHDPAEQKIVKLLDNL 464


>gb|AAU90184.1| unkonwn protein [Oryza sativa Japonica Group]
           gi|55168288|gb|AAV44154.1| unknown protein [Oryza sativa
           Japonica Group]
          Length = 395

 Score =  122 bits (305), Expect = 4e-26
 Identities = 56/116 (48%), Positives = 77/116 (66%)
 Frame = +1

Query: 4   RWRDALDLFEDMPRRECRPDVVSYRTLLDGLCESGEFGEAMAILDEMMFKGFVPGAGSVR 183
           RWRDA +L EDMPRR CRPDVV+YR L DG+C++G F EA  + +EM+FKGF P    VR
Sbjct: 277 RWRDASELVEDMPRRGCRPDVVTYRRLFDGICDAGGFSEARRVFNEMVFKGFAPSKDGVR 336

Query: 184 RFVKGLDCEGGTMSFRAALCGLAKQNAVESDVWEMVVGNMLKESSLMNVGKLVNHL 351
           +FV  ++ EG   S  + LC LA  NA+ES  WE  +  +L + +   + KL+++L
Sbjct: 337 KFVAWIEREGDAASLESVLCQLASVNALESSEWEKAMSGVLHDPAEQKIVKLLDNL 392


>ref|XP_002283237.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g53330-like [Vitis vinifera]
          Length = 464

 Score =  112 bits (279), Expect = 4e-23
 Identities = 55/114 (48%), Positives = 70/114 (61%)
 Frame = +1

Query: 4   RWRDALDLFEDMPRRECRPDVVSYRTLLDGLCESGEFGEAMAILDEMMFKGFVPGAGSVR 183
           +WR+A DLFEDMPRR C PDV SYR L DGLCE  +F EA  ILDEM+FKG+ P + S  
Sbjct: 339 KWREANDLFEDMPRRGCTPDVGSYRILFDGLCEGMQFNEAAFILDEMVFKGYAPKSASKT 398

Query: 184 RFVKGLDCEGGTMSFRAALCGLAKQNAVESDVWEMVVGNMLKESSLMNVGKLVN 345
           +FV+ L  EG        L  L K N ++ D W + V  + K+  L N  +LV+
Sbjct: 399 KFVEALCQEGNLELLCKVLNSLVKGNVIDGDAWSLAVSKVCKKEKLSNGSELVD 452


Top