BLASTX nr result
ID: Dioscorea21_contig00025839
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dioscorea21_contig00025839
(348 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002320901.1| predicted protein [Populus trichocarpa] gi|2... 192 3e-47
ref|XP_003626608.1| Pentatricopeptide repeat-containing protein ... 191 4e-47
emb|CAN72416.1| hypothetical protein VITISV_027905 [Vitis vinifera] 189 2e-46
ref|XP_004138384.1| PREDICTED: pentatricopeptide repeat-containi... 185 3e-45
ref|XP_002515077.1| pentatricopeptide repeat-containing protein,... 177 8e-43
>ref|XP_002320901.1| predicted protein [Populus trichocarpa] gi|222861674|gb|EEE99216.1|
predicted protein [Populus trichocarpa]
Length = 475
Score = 192 bits (487), Expect = 3e-47
Identities = 89/114 (78%), Positives = 104/114 (91%)
Frame = +2
Query: 2 LAYSLFNRVFSLGLTPDPQAYRSLMQALCRKSQVSTASDLLEDMLNKGFVPDALTYSSLL 181
+AYSLFN++F + PD ++YR LMQALCRKSQV+ A DLLEDMLNKG+VPDAL+Y++LL
Sbjct: 224 MAYSLFNQMFKRDVMPDVESYRILMQALCRKSQVNGAVDLLEDMLNKGYVPDALSYTTLL 283
Query: 182 NSLCRKKRLREAYKLLCRMKVRGCNPDIVHYNTVILGFCREGRPFDACKVLDDM 343
NSLCRKK+LREAYKLLCRMKV+GCNPDI+HYNTVILGFCREGR DACKVL+DM
Sbjct: 284 NSLCRKKKLREAYKLLCRMKVKGCNPDIIHYNTVILGFCREGRAMDACKVLEDM 337
>ref|XP_003626608.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|87240852|gb|ABD32710.1| Tetratricopeptide-like
helical [Medicago truncatula]
gi|355501623|gb|AES82826.1| Pentatricopeptide
repeat-containing protein [Medicago truncatula]
Length = 451
Score = 191 bits (486), Expect = 4e-47
Identities = 89/114 (78%), Positives = 102/114 (89%)
Frame = +2
Query: 2 LAYSLFNRVFSLGLTPDPQAYRSLMQALCRKSQVSTASDLLEDMLNKGFVPDALTYSSLL 181
+AY+LFN++F + PD Q+YR LMQALCRKSQV+ A DL EDMLNKGFVPD+ TY++LL
Sbjct: 200 IAYTLFNKMFKRDVVPDIQSYRILMQALCRKSQVNGAVDLFEDMLNKGFVPDSFTYTTLL 259
Query: 182 NSLCRKKRLREAYKLLCRMKVRGCNPDIVHYNTVILGFCREGRPFDACKVLDDM 343
NSLCRKK+LREAYKLLCRMKV+GCNPDIVHYNTVILGFCREGR DACKV+DDM
Sbjct: 260 NSLCRKKKLREAYKLLCRMKVKGCNPDIVHYNTVILGFCREGRAHDACKVIDDM 313
Score = 77.8 bits (190), Expect = 9e-13
Identities = 39/113 (34%), Positives = 64/113 (56%)
Frame = +2
Query: 5 AYSLFNRVFSLGLTPDPQAYRSLMQALCRKSQVSTASDLLEDMLNKGFVPDALTYSSLLN 184
A LF + + G PD Y +L+ +LCRK ++ A LL M KG PD + Y++++
Sbjct: 236 AVDLFEDMLNKGFVPDSFTYTTLLNSLCRKKKLREAYKLLCRMKVKGCNPDIVHYNTVIL 295
Query: 185 SLCRKKRLREAYKLLCRMKVRGCNPDIVHYNTVILGFCREGRPFDACKVLDDM 343
CR+ R +A K++ M+ GC P++V Y T++ G C G +A K +++M
Sbjct: 296 GFCREGRAHDACKVIDDMQANGCLPNLVSYRTLVNGLCHLGMLDEATKYVEEM 348
Score = 68.6 bits (166), Expect = 5e-10
Identities = 36/110 (32%), Positives = 58/110 (52%)
Frame = +2
Query: 5 AYSLFNRVFSLGLTPDPQAYRSLMQALCRKSQVSTASDLLEDMLNKGFVPDALTYSSLLN 184
AY L R+ G PD Y +++ CR+ + A +++DM G +P+ ++Y +L+N
Sbjct: 271 AYKLLCRMKVKGCNPDIVHYNTVILGFCREGRAHDACKVIDDMQANGCLPNLVSYRTLVN 330
Query: 185 SLCRKKRLREAYKLLCRMKVRGCNPDIVHYNTVILGFCREGRPFDACKVL 334
LC L EA K + M +G +P + ++ GFC GR +AC VL
Sbjct: 331 GLCHLGMLDEATKYVEEMLSKGFSPHFAVIHALVKGFCNVGRIEEACGVL 380
>emb|CAN72416.1| hypothetical protein VITISV_027905 [Vitis vinifera]
Length = 422
Score = 189 bits (480), Expect = 2e-46
Identities = 87/114 (76%), Positives = 103/114 (90%)
Frame = +2
Query: 2 LAYSLFNRVFSLGLTPDPQAYRSLMQALCRKSQVSTASDLLEDMLNKGFVPDALTYSSLL 181
+AY+LFN++F + PD ++YR LMQ LCRKSQV+ A DLLEDMLNKG+VPDAL+Y++LL
Sbjct: 171 IAYTLFNQMFKRDVAPDVESYRILMQGLCRKSQVNRAVDLLEDMLNKGYVPDALSYTTLL 230
Query: 182 NSLCRKKRLREAYKLLCRMKVRGCNPDIVHYNTVILGFCREGRPFDACKVLDDM 343
NSLCRKK+L+EAYKLLCRMKV+GCNPDIVHYNTVILGFCREGR DACKVL+DM
Sbjct: 231 NSLCRKKKLKEAYKLLCRMKVKGCNPDIVHYNTVILGFCREGRXLDACKVLEDM 284
Score = 67.4 bits (163), Expect = 1e-09
Identities = 36/113 (31%), Positives = 61/113 (53%)
Frame = +2
Query: 5 AYSLFNRVFSLGLTPDPQAYRSLMQALCRKSQVSTASDLLEDMLNKGFVPDALTYSSLLN 184
AY L R+ G PD Y +++ CR+ + A +LEDM + G P+ ++Y +L++
Sbjct: 242 AYKLLCRMKVKGCNPDIVHYNTVILGFCREGRXLDACKVLEDMPSNGCSPNLMSYGTLVS 301
Query: 185 SLCRKKRLREAYKLLCRMKVRGCNPDIVHYNTVILGFCREGRPFDACKVLDDM 343
LC + EA + M +G +P ++ +I GFC G+ +AC+VL +M
Sbjct: 302 GLCDQGLYDEAKNYVEEMLSKGFSPHFSVFHALINGFCNVGKLEEACEVLXEM 354
>ref|XP_004138384.1| PREDICTED: pentatricopeptide repeat-containing protein At4g01400,
mitochondrial-like [Cucumis sativus]
gi|449499186|ref|XP_004160743.1| PREDICTED:
pentatricopeptide repeat-containing protein At4g01400,
mitochondrial-like [Cucumis sativus]
Length = 482
Score = 185 bits (470), Expect = 3e-45
Identities = 82/114 (71%), Positives = 101/114 (88%)
Frame = +2
Query: 2 LAYSLFNRVFSLGLTPDPQAYRSLMQALCRKSQVSTASDLLEDMLNKGFVPDALTYSSLL 181
+AY+LFN++F + PD + YR+LMQ LCRK+QV+ A DLLEDMLNKG++PD L+Y++LL
Sbjct: 230 IAYTLFNKMFERNVIPDVETYRTLMQGLCRKNQVNGAVDLLEDMLNKGYIPDTLSYATLL 289
Query: 182 NSLCRKKRLREAYKLLCRMKVRGCNPDIVHYNTVILGFCREGRPFDACKVLDDM 343
NSLCRKK+LREAYKLLCRMKV+GCNPDI HYNTVI+GFCREGR DACK+L+DM
Sbjct: 290 NSLCRKKKLREAYKLLCRMKVKGCNPDIAHYNTVIMGFCREGRALDACKILEDM 343
Score = 67.8 bits (164), Expect = 9e-10
Identities = 35/101 (34%), Positives = 56/101 (55%)
Frame = +2
Query: 5 AYSLFNRVFSLGLTPDPQAYRSLMQALCRKSQVSTASDLLEDMLNKGFVPDALTYSSLLN 184
A L + + G PD +Y +L+ +LCRK ++ A LL M KG PD Y++++
Sbjct: 266 AVDLLEDMLNKGYIPDTLSYATLLNSLCRKKKLREAYKLLCRMKVKGCNPDIAHYNTVIM 325
Query: 185 SLCRKKRLREAYKLLCRMKVRGCNPDIVHYNTVILGFCREG 307
CR+ R +A K+L M+ GC P++V Y ++ G C +G
Sbjct: 326 GFCREGRALDACKILEDMQSNGCLPNLVSYESLTNGLCDQG 366
Score = 67.0 bits (162), Expect = 2e-09
Identities = 36/113 (31%), Positives = 58/113 (51%)
Frame = +2
Query: 5 AYSLFNRVFSLGLTPDPQAYRSLMQALCRKSQVSTASDLLEDMLNKGFVPDALTYSSLLN 184
AY L R+ G PD Y +++ CR+ + A +LEDM + G +P+ ++Y SL N
Sbjct: 301 AYKLLCRMKVKGCNPDIAHYNTVIMGFCREGRALDACKILEDMQSNGCLPNLVSYESLTN 360
Query: 185 SLCRKKRLREAYKLLCRMKVRGCNPDIVHYNTVILGFCREGRPFDACKVLDDM 343
LC + A + M ++G P + ++ GF GR ++C VL+DM
Sbjct: 361 GLCDQGMFELAKGYVEEMTLKGFYPHFSVIHALVKGFHSIGRIHESCSVLEDM 413
Score = 55.5 bits (132), Expect = 5e-06
Identities = 30/114 (26%), Positives = 57/114 (50%), Gaps = 1/114 (0%)
Frame = +2
Query: 5 AYSLFNRVFSLGLTPDPQAYRSLMQALC-RKSQVSTASDLLEDMLNKGFVPDALTYSSLL 181
A +F + G TP + +++ L ++ + A DL ++ + G +P+ +Y+ L+
Sbjct: 160 ALKVFYTMIDFGCTPSSKQLNRILEILVSHRNFIRPAFDLFKNARHHGVLPNTKSYNILI 219
Query: 182 NSLCRKKRLREAYKLLCRMKVRGCNPDIVHYNTVILGFCREGRPFDACKVLDDM 343
+ C + AY L +M R PD+ Y T++ G CR+ + A +L+DM
Sbjct: 220 RAFCWNGNISIAYTLFNKMFERNVIPDVETYRTLMQGLCRKNQVNGAVDLLEDM 273
>ref|XP_002515077.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis] gi|223545557|gb|EEF47061.1| pentatricopeptide
repeat-containing protein, putative [Ricinus communis]
Length = 262
Score = 177 bits (449), Expect = 8e-43
Identities = 84/114 (73%), Positives = 97/114 (85%)
Frame = +2
Query: 2 LAYSLFNRVFSLGLTPDPQAYRSLMQALCRKSQVSTASDLLEDMLNKGFVPDALTYSSLL 181
+AY LFN++F + PD ++YR LMQ LCR+SQV+ A LLEDMLNKGFVPD LTY++LL
Sbjct: 12 VAYKLFNQMFKRDVLPDIESYRILMQGLCRRSQVNGAVGLLEDMLNKGFVPDCLTYTTLL 71
Query: 182 NSLCRKKRLREAYKLLCRMKVRGCNPDIVHYNTVILGFCREGRPFDACKVLDDM 343
NSLCRKK+LREAYKLLCRMKV+GCNPDIVHYNT+I GFCREGR DA KVL DM
Sbjct: 72 NSLCRKKKLREAYKLLCRMKVKGCNPDIVHYNTIISGFCREGRAMDARKVLGDM 125
Score = 77.0 bits (188), Expect = 1e-12
Identities = 39/113 (34%), Positives = 64/113 (56%)
Frame = +2
Query: 5 AYSLFNRVFSLGLTPDPQAYRSLMQALCRKSQVSTASDLLEDMLNKGFVPDALTYSSLLN 184
A L + + G PD Y +L+ +LCRK ++ A LL M KG PD + Y+++++
Sbjct: 48 AVGLLEDMLNKGFVPDCLTYTTLLNSLCRKKKLREAYKLLCRMKVKGCNPDIVHYNTIIS 107
Query: 185 SLCRKKRLREAYKLLCRMKVRGCNPDIVHYNTVILGFCREGRPFDACKVLDDM 343
CR+ R +A K+L M+ GC P++V Y T++ G C +G +A L++M
Sbjct: 108 GFCREGRAMDARKVLGDMECNGCLPNLVSYRTLVAGICDQGMFDEAKSYLEEM 160