BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Dioscorea21_contig00025824
         (1344 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_001048280.1| Os02g0775200 [Oryza sativa Japonica Group] g...   587   e-165
gb|ACG35868.1| replication factor C subunit 3 [Zea mays]              582   e-164
dbj|BAB16439.1| replication factor C 36kDa subunit [Oryza sativa...   581   e-163
ref|NP_001136580.1| replication factor C subunit 3 [Zea mays] gi...   580   e-163
ref|XP_002454641.1| hypothetical protein SORBIDRAFT_04g034710 [S...   578   e-162

>ref|NP_001048280.1| Os02g0775200 [Oryza sativa Japonica Group]
            gi|46805779|dbj|BAD17147.1| putative replication factor C
            36kDa subunit [Oryza sativa Japonica Group]
            gi|46806135|dbj|BAD17365.1| putative replication factor C
            36kDa subunit [Oryza sativa Japonica Group]
            gi|113537811|dbj|BAF10194.1| Os02g0775200 [Oryza sativa
            Japonica Group] gi|215697717|dbj|BAG91711.1| unnamed
            protein product [Oryza sativa Japonica Group]
            gi|218191668|gb|EEC74095.1| hypothetical protein
            OsI_09136 [Oryza sativa Indica Group]
          Length = 361

 Score =  587 bits (1512), Expect = e-165
 Identities = 297/359 (82%), Positives = 329/359 (91%), Gaps = 1/359 (0%)
 Frame = -3

Query: 1264 ADMASPMEIDPSFPKPTDSSENKGKTAAIST-GSKSAPWVEKYRPQSLADVAAHRDIIDT 1088
            A  A+PM+ID + P P  ++  KGK    ST G ++APWVEKYRPQSL DVAAHRDI+DT
Sbjct: 4    ATAATPMDIDAAAPPPGAAA--KGKAPLSSTPGGRAAPWVEKYRPQSLGDVAAHRDIVDT 61

Query: 1087 IDRLTNENKLPHLLLYGPPGTGKTSTILAVARKLYGSQYRNMILELNASDDRGIDVVRQK 908
            IDRLTNEN+LPHLLLYGPPGTGKTSTILAVARKLYGSQY NMILELNASD+RGIDVVRQ+
Sbjct: 62   IDRLTNENRLPHLLLYGPPGTGKTSTILAVARKLYGSQYGNMILELNASDERGIDVVRQQ 121

Query: 907  IVDFASARSLSFSGQAPVKLVLLDEADAMTKDAQFALRRVIEKHTKSTRFALICNHVNKI 728
            I DFASARSLSF  +  VK+VLLDEADAMTKDAQFALRRVIEKHT+STRFALICNHVNKI
Sbjct: 122  IQDFASARSLSFGAKQSVKMVLLDEADAMTKDAQFALRRVIEKHTRSTRFALICNHVNKI 181

Query: 727  IPALQSRCTRFRFAPLDATYIRERIQYVIKAEGLDVDEGGLTALVRLSNGDMRKALNILQ 548
            IPALQSRCTRFRFAPLD T++RER++++I++EGLDVD+GGLTALVRLSNGDMRKALNILQ
Sbjct: 182  IPALQSRCTRFRFAPLDGTHVRERLKHIIQSEGLDVDDGGLTALVRLSNGDMRKALNILQ 241

Query: 547  STHMASPHITEEAVYLCTGNPTPKDIEQIAFWLLNESFTTSFRKISDMKMRKGLALVDIV 368
            STHMAS  ITEEAVYLCTGNP PKDIEQIA+WLLNESF+TSF+ ISDMKMRKGLALVDI+
Sbjct: 242  STHMASKQITEEAVYLCTGNPMPKDIEQIAYWLLNESFSTSFKCISDMKMRKGLALVDII 301

Query: 367  REVTMFVFKIKMPSDVRVKLINDLADIEYRLSFGCNDKLQLGSLVSTFTNARCAIVAAA 191
            REVTMFVFKI+MPSDVR+KLINDLADIEYRLSF CNDKLQLG+L+STFT AR A+VAAA
Sbjct: 302  REVTMFVFKIQMPSDVRIKLINDLADIEYRLSFACNDKLQLGALISTFTGARTAMVAAA 360


>gb|ACG35868.1| replication factor C subunit 3 [Zea mays]
          Length = 362

 Score =  582 bits (1500), Expect = e-164
 Identities = 292/355 (82%), Positives = 322/355 (90%)
 Frame = -3

Query: 1255 ASPMEIDPSFPKPTDSSENKGKTAAISTGSKSAPWVEKYRPQSLADVAAHRDIIDTIDRL 1076
            A+PM+ID + P P          A +S G ++APWVEKYRPQSLADVAAHRDI+DTIDRL
Sbjct: 7    AAPMDIDAAAPPPPPPGAAAKGKALLSAGGRAAPWVEKYRPQSLADVAAHRDIVDTIDRL 66

Query: 1075 TNENKLPHLLLYGPPGTGKTSTILAVARKLYGSQYRNMILELNASDDRGIDVVRQKIVDF 896
            TNEN+LPHLLLYGPPGTGKTSTILAVARKLYGSQY NMILELNASD+RGIDVVRQ+I DF
Sbjct: 67   TNENRLPHLLLYGPPGTGKTSTILAVARKLYGSQYSNMILELNASDERGIDVVRQQIQDF 126

Query: 895  ASARSLSFSGQAPVKLVLLDEADAMTKDAQFALRRVIEKHTKSTRFALICNHVNKIIPAL 716
            A ARSLSF  +  VKLVLLDEADAMTKDAQFALRRVIEK+T+STRFALICNHVNKIIPAL
Sbjct: 127  AGARSLSFGARPSVKLVLLDEADAMTKDAQFALRRVIEKYTRSTRFALICNHVNKIIPAL 186

Query: 715  QSRCTRFRFAPLDATYIRERIQYVIKAEGLDVDEGGLTALVRLSNGDMRKALNILQSTHM 536
            QSRCTRFRFAPLD +++RER+Q++IK+EGL VD+GGLTALVRLSNGDMRKALNILQSTHM
Sbjct: 187  QSRCTRFRFAPLDGSHVRERLQHIIKSEGLSVDDGGLTALVRLSNGDMRKALNILQSTHM 246

Query: 535  ASPHITEEAVYLCTGNPTPKDIEQIAFWLLNESFTTSFRKISDMKMRKGLALVDIVREVT 356
            AS  ITEEAVYLCTGNP PKDIEQIAFWLLNE F+TSF+ ISDMKMRKGLALVDI+REVT
Sbjct: 247  ASQQITEEAVYLCTGNPMPKDIEQIAFWLLNEPFSTSFKYISDMKMRKGLALVDIIREVT 306

Query: 355  MFVFKIKMPSDVRVKLINDLADIEYRLSFGCNDKLQLGSLVSTFTNARCAIVAAA 191
            MFVFKI+MPSDVRVKLIN+LADIEYRLSF CNDKLQLG+L+STFT+ R A+VAAA
Sbjct: 307  MFVFKIQMPSDVRVKLINNLADIEYRLSFACNDKLQLGALISTFTDTRTAMVAAA 361


>dbj|BAB16439.1| replication factor C 36kDa subunit [Oryza sativa Japonica Group]
          Length = 367

 Score =  581 bits (1498), Expect = e-163
 Identities = 297/365 (81%), Positives = 329/365 (90%), Gaps = 7/365 (1%)
 Frame = -3

Query: 1264 ADMASPMEIDPSFPKPTDSSENKGKTAAIST-GSKSAPWVEKYRPQSLADVAAHRDIIDT 1088
            A  A+PM+ID + P P  ++  KGK    ST G ++APWVEKYRPQSL DVAAHRDI+DT
Sbjct: 4    ATAATPMDIDAAAPPPGAAA--KGKAPLSSTPGGRAAPWVEKYRPQSLGDVAAHRDIVDT 61

Query: 1087 IDRLTNENKLPHLLLYGPPGTGKTSTILAVARKLYGSQYRNMILELNASDDRGIDVVRQK 908
            IDRLTNEN+LPHLLLYGPPGTGKTSTILAVARKLYGSQY NMILELNASD+RGIDVVRQ+
Sbjct: 62   IDRLTNENRLPHLLLYGPPGTGKTSTILAVARKLYGSQYGNMILELNASDERGIDVVRQQ 121

Query: 907  IVDFASARSLSFSGQAPVKLVLLDEADAMTKDAQFALRRVIEKHTKSTRFALICNHVNKI 728
            I DFASARSLSF  +  VK+VLLDEADAMTKDAQFALRRVIEKHT+STRFALICNHVNKI
Sbjct: 122  IQDFASARSLSFGAKQSVKMVLLDEADAMTKDAQFALRRVIEKHTRSTRFALICNHVNKI 181

Query: 727  IPALQSRCTRFRFAPLDATYIRERIQYVIKAEGLDVDEGGLTALVRLSNGDMRKALNILQ 548
            IPALQSRCTRFRFAPLD T++RER++++I++EGLDVD+GGLTALVRLSNGDMRKALNILQ
Sbjct: 182  IPALQSRCTRFRFAPLDGTHVRERLKHIIQSEGLDVDDGGLTALVRLSNGDMRKALNILQ 241

Query: 547  STHMASPHITEEAVYLCTGNPTPKDIEQIAFWLLNESFTTSFR------KISDMKMRKGL 386
            STHMAS  ITEEAVYLCTGNP PKDIEQIA+WLLNESF+TSF+       ISDMKMRKGL
Sbjct: 242  STHMASKQITEEAVYLCTGNPMPKDIEQIAYWLLNESFSTSFKCILNYQSISDMKMRKGL 301

Query: 385  ALVDIVREVTMFVFKIKMPSDVRVKLINDLADIEYRLSFGCNDKLQLGSLVSTFTNARCA 206
            ALVDI+REVTMFVFKI+MPSDVR+KLINDLADIEYRLSF CNDKLQLG+L+STFT AR A
Sbjct: 302  ALVDIIREVTMFVFKIQMPSDVRIKLINDLADIEYRLSFACNDKLQLGALISTFTGARTA 361

Query: 205  IVAAA 191
            +VAAA
Sbjct: 362  MVAAA 366


>ref|NP_001136580.1| replication factor C subunit 3 [Zea mays] gi|194696262|gb|ACF82215.1|
            unknown [Zea mays] gi|413939151|gb|AFW73702.1|
            replication factor C subunit 3 [Zea mays]
          Length = 362

 Score =  580 bits (1495), Expect = e-163
 Identities = 292/355 (82%), Positives = 321/355 (90%)
 Frame = -3

Query: 1255 ASPMEIDPSFPKPTDSSENKGKTAAISTGSKSAPWVEKYRPQSLADVAAHRDIIDTIDRL 1076
            A+ M+ID + P P          A +S G ++APWVEKYRPQSLADVAAHRDI+DTIDRL
Sbjct: 7    AALMDIDAAAPPPPPPGAAAKGKAPLSAGGRAAPWVEKYRPQSLADVAAHRDIVDTIDRL 66

Query: 1075 TNENKLPHLLLYGPPGTGKTSTILAVARKLYGSQYRNMILELNASDDRGIDVVRQKIVDF 896
            TNEN+LPHLLLYGPPGTGKTSTILAVARKLYGSQY NMILELNASD+RGIDVVRQ+I DF
Sbjct: 67   TNENRLPHLLLYGPPGTGKTSTILAVARKLYGSQYSNMILELNASDERGIDVVRQQIQDF 126

Query: 895  ASARSLSFSGQAPVKLVLLDEADAMTKDAQFALRRVIEKHTKSTRFALICNHVNKIIPAL 716
            A ARSLSF  +  VKLVLLDEADAMTKDAQFALRRVIEK+T+STRFALICNHVNKIIPAL
Sbjct: 127  AGARSLSFGARPSVKLVLLDEADAMTKDAQFALRRVIEKYTRSTRFALICNHVNKIIPAL 186

Query: 715  QSRCTRFRFAPLDATYIRERIQYVIKAEGLDVDEGGLTALVRLSNGDMRKALNILQSTHM 536
            QSRCTRFRFAPLD +++RER+Q++IK+EGL VD+GGLTALVRLSNGDMRKALNILQSTHM
Sbjct: 187  QSRCTRFRFAPLDGSHVRERLQHIIKSEGLSVDDGGLTALVRLSNGDMRKALNILQSTHM 246

Query: 535  ASPHITEEAVYLCTGNPTPKDIEQIAFWLLNESFTTSFRKISDMKMRKGLALVDIVREVT 356
            AS  ITEEAVYLCTGNP PKDIEQIAFWLLNE F+TSF+ ISDMKMRKGLALVDI+REVT
Sbjct: 247  ASQQITEEAVYLCTGNPMPKDIEQIAFWLLNEPFSTSFKYISDMKMRKGLALVDIIREVT 306

Query: 355  MFVFKIKMPSDVRVKLINDLADIEYRLSFGCNDKLQLGSLVSTFTNARCAIVAAA 191
            MFVFKI+MPSDVRVKLINDLADIEYRLSF CNDKLQLG+L+STFT+ R A+VAAA
Sbjct: 307  MFVFKIQMPSDVRVKLINDLADIEYRLSFACNDKLQLGALISTFTDTRTAMVAAA 361


>ref|XP_002454641.1| hypothetical protein SORBIDRAFT_04g034710 [Sorghum bicolor]
            gi|241934472|gb|EES07617.1| hypothetical protein
            SORBIDRAFT_04g034710 [Sorghum bicolor]
          Length = 362

 Score =  578 bits (1490), Expect = e-162
 Identities = 290/355 (81%), Positives = 320/355 (90%)
 Frame = -3

Query: 1255 ASPMEIDPSFPKPTDSSENKGKTAAISTGSKSAPWVEKYRPQSLADVAAHRDIIDTIDRL 1076
            A+PM+ID + P P          A +S G ++APWVEKYRPQSLADVAAHRDI+DTIDRL
Sbjct: 7    AAPMDIDAAAPPPPPPGAAAKGKAPLSAGGRAAPWVEKYRPQSLADVAAHRDIVDTIDRL 66

Query: 1075 TNENKLPHLLLYGPPGTGKTSTILAVARKLYGSQYRNMILELNASDDRGIDVVRQKIVDF 896
            TNEN+LPHLLLYGPPGTGKTSTILAVARKLYGSQY NMILELNASD+RGIDVVRQ+I DF
Sbjct: 67   TNENRLPHLLLYGPPGTGKTSTILAVARKLYGSQYSNMILELNASDERGIDVVRQQIQDF 126

Query: 895  ASARSLSFSGQAPVKLVLLDEADAMTKDAQFALRRVIEKHTKSTRFALICNHVNKIIPAL 716
            A ARSLSF  +  VKLVLLDEADAMTKDAQFALRRVIEK+T+STRFALICNHVNKIIPAL
Sbjct: 127  AGARSLSFGARPSVKLVLLDEADAMTKDAQFALRRVIEKYTRSTRFALICNHVNKIIPAL 186

Query: 715  QSRCTRFRFAPLDATYIRERIQYVIKAEGLDVDEGGLTALVRLSNGDMRKALNILQSTHM 536
            QSRCTRFRFAPLD +++RER+Q++IK+EGL VDEGGLTALVRLSNGDMRKALNILQSTHM
Sbjct: 187  QSRCTRFRFAPLDGSHVRERLQHIIKSEGLSVDEGGLTALVRLSNGDMRKALNILQSTHM 246

Query: 535  ASPHITEEAVYLCTGNPTPKDIEQIAFWLLNESFTTSFRKISDMKMRKGLALVDIVREVT 356
            AS  ITEEAVYLCTGNP P DIE+IAFWLLNE F+TSF+ ISDMKMRKGLALVDI+REVT
Sbjct: 247  ASQQITEEAVYLCTGNPMPNDIERIAFWLLNEPFSTSFKHISDMKMRKGLALVDIIREVT 306

Query: 355  MFVFKIKMPSDVRVKLINDLADIEYRLSFGCNDKLQLGSLVSTFTNARCAIVAAA 191
            MFVFKI+MPSDVRVKLIN+LADIEYRLSF CNDKLQLG+L+S FT+ R A+VAAA
Sbjct: 307  MFVFKIEMPSDVRVKLINNLADIEYRLSFACNDKLQLGALISAFTDTRTAMVAAA 361