BLASTX nr result

ID: Dioscorea21_contig00025595 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Dioscorea21_contig00025595
         (642 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABN06064.1| RNA-directed DNA polymerase (Reverse transcriptas...    80   3e-13
gb|AFK13856.1| Ty3/gypsy retrotransposon protein [Beta vulgaris ...    78   2e-12
emb|CAN64437.1| hypothetical protein VITISV_011228 [Vitis vinifera]    78   2e-12
emb|CAN60449.1| hypothetical protein VITISV_036155 [Vitis vinifera]    77   3e-12
emb|CAN82562.1| hypothetical protein VITISV_014148 [Vitis vinifera]    74   2e-11

>gb|ABN06064.1| RNA-directed DNA polymerase (Reverse transcriptase); Chromo; Zinc
            finger, CCHC-type; Peptidase aspartic, active site;
            Polynucleotidyl transferase, Ribonuclease H fold
            [Medicago truncatula]
          Length = 1297

 Score = 80.5 bits (197), Expect = 3e-13
 Identities = 41/89 (46%), Positives = 55/89 (61%)
 Frame = -1

Query: 642  KIHNVFHVSKLKRFVGDPNVEARTLPDEFLTQHPLREPENILKTREVLRQGRIFTEILVH 463
            ++H+VFHVS LK+ VG+ + E   LPD    +  + EPE +L  R +  QG    ++LVH
Sbjct: 1171 RVHSVFHVSLLKKAVGNYH-EEENLPDLEEDKGVVIEPETVLTRRTIQVQGEKIDQVLVH 1229

Query: 462  WKGQSVDEATWEDAKDFHMTFPDFILEDK 376
            W GQ V+EATWED       FP+F LEDK
Sbjct: 1230 WMGQKVEEATWEDTLIIRSQFPNFYLEDK 1258


>gb|AFK13856.1| Ty3/gypsy retrotransposon protein [Beta vulgaris subsp. vulgaris]
          Length = 1631

 Score = 77.8 bits (190), Expect = 2e-12
 Identities = 40/89 (44%), Positives = 51/89 (57%)
 Frame = -1

Query: 642  KIHNVFHVSKLKRFVGDPNVEARTLPDEFLTQHPLREPENILKTREVLRQGRIFTEILVH 463
            KIH VFHVS LK+ VG+  V     P   +    + EPE +L  R++ +  + FTE L+ 
Sbjct: 1505 KIHPVFHVSLLKKVVGNTPVLPTIPPHIDVDMELVVEPEELLDVRQIRQGKQTFTECLIK 1564

Query: 462  WKGQSVDEATWEDAKDFHMTFPDFILEDK 376
            WKG    EATWED    H+ FP F LEDK
Sbjct: 1565 WKGLPAFEATWEDMSPIHLRFPSFHLEDK 1593


>emb|CAN64437.1| hypothetical protein VITISV_011228 [Vitis vinifera]
          Length = 623

 Score = 77.8 bits (190), Expect = 2e-12
 Identities = 40/88 (45%), Positives = 50/88 (56%)
 Frame = -1

Query: 639 IHNVFHVSKLKRFVGDPNVEARTLPDEFLTQHPLREPENILKTREVLRQGRIFTEILVHW 460
           IH VFHV  LK+ +GD N    TLP        + EP  I+ TR   + G+ F E LV W
Sbjct: 510 IHPVFHVXLLKKTIGDSNARCPTLPPLTDDGALIIEPXEIIDTRWFXKGGKFFEECLVKW 569

Query: 459 KGQSVDEATWEDAKDFHMTFPDFILEDK 376
           K   V++ATWE+A + H  FPD  LEDK
Sbjct: 570 KNLPVEDATWENAXELHDRFPDLNLEDK 597


>emb|CAN60449.1| hypothetical protein VITISV_036155 [Vitis vinifera]
          Length = 647

 Score = 77.0 bits (188), Expect = 3e-12
 Identities = 41/89 (46%), Positives = 51/89 (57%)
 Frame = -1

Query: 642 KIHNVFHVSKLKRFVGDPNVEARTLPDEFLTQHPLREPENILKTREVLRQGRIFTEILVH 463
           +IH VFHVS LK+ +GD N    TLP        + EP  I+ TR   + G  F E LV 
Sbjct: 533 RIHPVFHVSLLKKTIGDSNACCPTLPPLTDDGAFIIEPTEIIDTRWFKKGGNFFEECLVK 592

Query: 462 WKGQSVDEATWEDAKDFHMTFPDFILEDK 376
           WK   V++ATWE+A + H  FPD  LEDK
Sbjct: 593 WKNLLVEDATWENAAELHDRFPDLNLEDK 621


>emb|CAN82562.1| hypothetical protein VITISV_014148 [Vitis vinifera]
          Length = 1384

 Score = 74.3 bits (181), Expect = 2e-11
 Identities = 43/93 (46%), Positives = 53/93 (56%)
 Frame = -1

Query: 642  KIHNVFHVSKLKRFVGDPNVEARTLPDEFLTQHPLREPENILKTREVLRQGRIFTEILVH 463
            KIH +FHVS LK+ +G+PN     LP        + EPE IL TR V +  RIF E LV 
Sbjct: 1270 KIHPIFHVSLLKKKLGEPNNTTVELPLTDDEGEIVLEPEGILDTRWVKKGSRIFEESLVK 1329

Query: 462  WKGQSVDEATWEDAKDFHMTFPDFILEDKDKIQ 364
            WK   +D+ATWED K     F +  LEDK  +Q
Sbjct: 1330 WKRLPLDDATWEDTKMLRDRFINVNLEDKVLVQ 1362


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