BLASTX nr result

ID: Dioscorea21_contig00025536 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Dioscorea21_contig00025536
         (253 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABS84825.1| thioredoxin [Limonium bicolor]                          74   2e-11
ref|XP_002282265.2| PREDICTED: thioredoxin M4, chloroplastic-lik...    69   4e-10
ref|XP_002316901.1| thioredoxin m [Populus trichocarpa] gi|22285...    64   1e-08
gb|AGG19198.1| mitochondrial thioredoxin M-type 9, partial [Tama...    63   2e-08
ref|XP_002520230.1| thioredoxin m(mitochondrial)-type, putative ...    62   4e-08

>gb|ABS84825.1| thioredoxin [Limonium bicolor]
          Length = 187

 Score = 73.6 bits (179), Expect = 2e-11
 Identities = 39/80 (48%), Positives = 52/80 (65%), Gaps = 3/80 (3%)
 Frame = -3

Query: 233 SRKPGFLSGFKGLAITNYSSRRSLMRAQNFRSSGC---GAIVCERPASTTEVPDVTKATW 63
           +R+P  L+ F GL + + +S R   R +  RSSG    G +VCE P +  EV  VT ++W
Sbjct: 36  ARQPVKLAKFSGLRVISSASTR---RLRPLRSSGVRRSGRVVCESPDTAVEVQSVTDSSW 92

Query: 62  QSLVLDSDTPVLVLFWATWC 3
           QSLVL+SD+PVLV FWA WC
Sbjct: 93  QSLVLESDSPVLVEFWAPWC 112


>ref|XP_002282265.2| PREDICTED: thioredoxin M4, chloroplastic-like [Vitis vinifera]
           gi|302143024|emb|CBI20319.3| unnamed protein product
           [Vitis vinifera]
          Length = 188

 Score = 68.9 bits (167), Expect = 4e-10
 Identities = 42/90 (46%), Positives = 48/90 (53%), Gaps = 11/90 (12%)
 Frame = -3

Query: 239 LASRKPGFLSG---------FKGLAITNYSSRRSLMRAQNFRSSG--CGAIVCERPASTT 93
           +AS    FLSG         F GL I    + RS+  A      G   G +VCE   +  
Sbjct: 24  IASSPVCFLSGRRGLARLPEFSGLKIQPSLASRSVAAAGRSSRVGRRVGGVVCEAQETAV 83

Query: 92  EVPDVTKATWQSLVLDSDTPVLVLFWATWC 3
           EVP V  ATWQSLVLD+DTPVLV FWA WC
Sbjct: 84  EVPAVIDATWQSLVLDADTPVLVEFWAPWC 113


>ref|XP_002316901.1| thioredoxin m [Populus trichocarpa] gi|222859966|gb|EEE97513.1|
           thioredoxin m [Populus trichocarpa]
          Length = 190

 Score = 64.3 bits (155), Expect = 1e-08
 Identities = 41/88 (46%), Positives = 52/88 (59%), Gaps = 5/88 (5%)
 Frame = -3

Query: 251 FSSTLASRKPGFLSGFKGLAITNYSS---RRSL--MRAQNFRSSGCGAIVCERPASTTEV 87
           F+ST+  R   F    KGL I  +SS    RSL  +   + R +  G IVCE      +V
Sbjct: 29  FASTINRRSLRFPQ-LKGLKIHFHSSSTVNRSLGSVSQSSSRLACAGRIVCEAQDIAVKV 87

Query: 86  PDVTKATWQSLVLDSDTPVLVLFWATWC 3
           P VT ATW+SLVL+S++PVLV FWA WC
Sbjct: 88  PAVTDATWKSLVLESESPVLVEFWAPWC 115


>gb|AGG19198.1| mitochondrial thioredoxin M-type 9, partial [Tamarix hispida]
          Length = 160

 Score = 63.2 bits (152), Expect = 2e-08
 Identities = 36/85 (42%), Positives = 47/85 (55%), Gaps = 3/85 (3%)
 Frame = -3

Query: 248 SSTLASRKPGFLSGFKGLAITNYSSRRSLMRAQNFRSS---GCGAIVCERPASTTEVPDV 78
           +S  A+ +   L  F+GL + +  S  S +R+ N +S    G G IVCE P +  E   V
Sbjct: 2   TSVSANSQLAKLPEFRGLKVKSRFST-SFVRSTNLKSRIVRGAGRIVCESPDTAVESSSV 60

Query: 77  TKATWQSLVLDSDTPVLVLFWATWC 3
            + TW S VL SD PVLV FWA WC
Sbjct: 61  NETTWDSSVLGSDLPVLVEFWAPWC 85


>ref|XP_002520230.1| thioredoxin m(mitochondrial)-type, putative [Ricinus communis]
           gi|223540576|gb|EEF42142.1| thioredoxin
           m(mitochondrial)-type, putative [Ricinus communis]
          Length = 181

 Score = 62.4 bits (150), Expect = 4e-08
 Identities = 36/83 (43%), Positives = 51/83 (61%), Gaps = 2/83 (2%)
 Frame = -3

Query: 245 STLASRKPGF-LSGFKGLAITNYSSRRSLMRAQ-NFRSSGCGAIVCERPASTTEVPDVTK 72
           S+  +R+P   L   KGL +++ ++ RSL R+    + +  G IVCE   +  EV  VT 
Sbjct: 24  SSSVNRRPAVTLPVAKGLKVSSVTTARSLARSPPRSQLARPGRIVCEAQDTAVEVLAVTD 83

Query: 71  ATWQSLVLDSDTPVLVLFWATWC 3
            TW+SLVL+S+ PVLV FWA WC
Sbjct: 84  QTWKSLVLESEFPVLVEFWAPWC 106


Top