BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Dioscorea21_contig00025518
         (956 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004171232.1| PREDICTED: pentatricopeptide repeat-containi...   280   3e-73
ref|XP_004139380.1| PREDICTED: pentatricopeptide repeat-containi...   280   3e-73
ref|XP_002275085.1| PREDICTED: pentatricopeptide repeat-containi...   280   5e-73
ref|XP_002328495.1| predicted protein [Populus trichocarpa] gi|2...   270   3e-70
ref|NP_187126.1| pentatricopeptide repeat-containing protein [Ar...   241   2e-61

>ref|XP_004171232.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04750,
            mitochondrial-like [Cucumis sativus]
          Length = 586

 Score =  280 bits (717), Expect = 3e-73
 Identities = 138/235 (58%), Positives = 171/235 (72%)
 Frame = +1

Query: 1    IDMYCKCGSIERARVVFEMVSERDITLWTAMMSGLALHGHGTKALELFWDMQREGLLPNN 180
            IDMYCKCGSIERA V+F  + E+D+T WT M++G A HG G KALELF  MQ E   PN+
Sbjct: 338  IDMYCKCGSIERAFVIFNQIPEKDVTTWTTMITGFAFHGFGNKALELFSVMQAE-TKPND 396

Query: 181  VTLLAALTACAHGGLVDQGVRIFQSMKHVYGIAPGVEHYGCLVDVLTRSGRLMEAMNVIQ 360
            VT ++ L AC+H GLVD+G++IF SMK  Y I PGVEHYGCLVD+L RSGRL++A+ VI+
Sbjct: 397  VTFVSVLAACSHSGLVDEGLKIFSSMKKRYSIEPGVEHYGCLVDLLCRSGRLLDAIGVIE 456

Query: 361  MMPVKPSSSIWGSVLSAAKTCRNMKLAEDAXXXXXXXXXXXXGGYILLSNVYAACRRWTY 540
             MP++PS SIWG+VLSA +  RNM+LAE A            GGYILLSNVYA C RW+Y
Sbjct: 457  KMPMEPSRSIWGAVLSACRMHRNMELAERALMELLKLEPEKEGGYILLSNVYATCGRWSY 516

Query: 541  SGKIRGVMETKGAKKLPGCSSVVVNGLVHYFFSSDKRHTRWPDIYIMLCNLHREM 705
            S  IR VM ++G KK+ GCSSV V+G+VH F +S+K+H RW DI  +L  L  EM
Sbjct: 517  SDSIREVMNSRGVKKIAGCSSVAVDGMVHDFTASNKQHPRWMDICSILSFLTNEM 571



 Score = 58.5 bits (140), Expect = 2e-06
 Identities = 40/149 (26%), Positives = 70/149 (46%)
 Frame = +1

Query: 1   IDMYCKCGSIERARVVFEMVSERDITLWTAMMSGLALHGHGTKALELFWDMQREGLLPNN 180
           I  Y   G  E AR +F+ +S+R++  +  M+ G A  G+    LELF DM+  GL P++
Sbjct: 105 IKRYVDNGCFECARQLFDEMSDRNVVSYNTMILGFAKVGNILGILELFHDMRSHGLEPDD 164

Query: 181 VTLLAALTACAHGGLVDQGVRIFQSMKHVYGIAPGVEHYGCLVDVLTRSGRLMEAMNVIQ 360
            T+L  L  C   G    G  +   ++   G +  +  Y  L+D+  +   L  A  V  
Sbjct: 165 FTMLGLLLLCGQLGETKLGKSVHAQIEKSIG-SSNLILYNALLDMYVKCNELKLARKVFD 223

Query: 361 MMPVKPSSSIWGSVLSAAKTCRNMKLAED 447
             P++  +  W ++++       ++LA D
Sbjct: 224 -GPMEKDTVSWNTIIAGYAKVGELELACD 251


>ref|XP_004139380.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04750,
            mitochondrial-like [Cucumis sativus]
          Length = 651

 Score =  280 bits (717), Expect = 3e-73
 Identities = 138/235 (58%), Positives = 171/235 (72%)
 Frame = +1

Query: 1    IDMYCKCGSIERARVVFEMVSERDITLWTAMMSGLALHGHGTKALELFWDMQREGLLPNN 180
            IDMYCKCGSIERA V+F  + E+D+T WT M++G A HG G KALELF  MQ E   PN+
Sbjct: 403  IDMYCKCGSIERAFVIFNQIPEKDVTTWTTMITGFAFHGFGNKALELFSVMQAE-TKPND 461

Query: 181  VTLLAALTACAHGGLVDQGVRIFQSMKHVYGIAPGVEHYGCLVDVLTRSGRLMEAMNVIQ 360
            VT ++ L AC+H GLVD+G++IF SMK  Y I PGVEHYGCLVD+L RSGRL++A+ VI+
Sbjct: 462  VTFVSVLAACSHSGLVDEGLKIFSSMKKRYSIEPGVEHYGCLVDLLCRSGRLLDAIGVIE 521

Query: 361  MMPVKPSSSIWGSVLSAAKTCRNMKLAEDAXXXXXXXXXXXXGGYILLSNVYAACRRWTY 540
             MP++PS SIWG+VLSA +  RNM+LAE A            GGYILLSNVYA C RW+Y
Sbjct: 522  KMPMEPSRSIWGAVLSACRMHRNMELAERALMELLKLEPEKEGGYILLSNVYATCGRWSY 581

Query: 541  SGKIRGVMETKGAKKLPGCSSVVVNGLVHYFFSSDKRHTRWPDIYIMLCNLHREM 705
            S  IR VM ++G KK+ GCSSV V+G+VH F +S+K+H RW DI  +L  L  EM
Sbjct: 582  SDSIREVMNSRGVKKIAGCSSVAVDGMVHDFTASNKQHPRWMDICSILSFLTNEM 636



 Score = 58.5 bits (140), Expect = 2e-06
 Identities = 40/149 (26%), Positives = 70/149 (46%)
 Frame = +1

Query: 1   IDMYCKCGSIERARVVFEMVSERDITLWTAMMSGLALHGHGTKALELFWDMQREGLLPNN 180
           I  Y   G  E AR +F+ +S+R++  +  M+ G A  G+    LELF DM+  GL P++
Sbjct: 170 IKRYVDNGCFECARQLFDEMSDRNVVSYNTMILGFAKVGNILGILELFHDMRSHGLEPDD 229

Query: 181 VTLLAALTACAHGGLVDQGVRIFQSMKHVYGIAPGVEHYGCLVDVLTRSGRLMEAMNVIQ 360
            T+L  L  C   G    G  +   ++   G +  +  Y  L+D+  +   L  A  V  
Sbjct: 230 FTMLGLLLLCGQLGETKLGKSVHAQIEKSIG-SSNLILYNALLDMYVKCNELKLARKVFD 288

Query: 361 MMPVKPSSSIWGSVLSAAKTCRNMKLAED 447
             P++  +  W ++++       ++LA D
Sbjct: 289 -GPMEKDTVSWNTIIAGYAKVGELELACD 316


>ref|XP_002275085.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04750,
            mitochondrial-like [Vitis vinifera]
          Length = 654

 Score =  280 bits (715), Expect = 5e-73
 Identities = 136/243 (55%), Positives = 177/243 (72%)
 Frame = +1

Query: 1    IDMYCKCGSIERARVVFEMVSERDITLWTAMMSGLALHGHGTKALELFWDMQREGLLPNN 180
            IDMY KCGSI+RA +VF  V+E+D+T+WT M++G A HG+G+KAL+LF++MQ E ++PN 
Sbjct: 404  IDMYWKCGSIKRACMVFREVTEKDVTVWTTMITGFAFHGYGSKALQLFYEMQ-EYVMPNQ 462

Query: 181  VTLLAALTACAHGGLVDQGVRIFQSMKHVYGIAPGVEHYGCLVDVLTRSGRLMEAMNVIQ 360
            VT +A LTAC+H G V QG+RIF SMK  YGI PGVEHYGCLVD+L RSGR  E  +VI+
Sbjct: 463  VTFVAVLTACSHSGFVSQGLRIFNSMKERYGIEPGVEHYGCLVDLLGRSGRFSEVKDVIE 522

Query: 361  MMPVKPSSSIWGSVLSAAKTCRNMKLAEDAXXXXXXXXXXXXGGYILLSNVYAACRRWTY 540
            MMP+KPS SIWG+VLSA +   N+++AE A            GGY+LLSN+YA   RW +
Sbjct: 523  MMPMKPSRSIWGAVLSACRAYGNIEIAEIAGKELLKLEPEKEGGYVLLSNIYATSGRWKH 582

Query: 541  SGKIRGVMETKGAKKLPGCSSVVVNGLVHYFFSSDKRHTRWPDIYIMLCNLHREMSSGEV 720
            S KIR +ME++G KK  GCSSVVV+G++H F ++DKRH RW +I  +L  L  EM  G  
Sbjct: 583  SDKIREIMESRGVKKTAGCSSVVVDGIIHEFVAADKRHPRWIEIQSILFCLKSEMKLGTD 642

Query: 721  LLM 729
             L+
Sbjct: 643  FLL 645


>ref|XP_002328495.1| predicted protein [Populus trichocarpa] gi|222838210|gb|EEE76575.1|
            predicted protein [Populus trichocarpa]
          Length = 580

 Score =  270 bits (691), Expect = 3e-70
 Identities = 134/238 (56%), Positives = 175/238 (73%)
 Frame = +1

Query: 1    IDMYCKCGSIERARVVFEMVSERDITLWTAMMSGLALHGHGTKALELFWDMQREGLLPNN 180
            IDMYCKCGSIERA  VF+ ++++D+T+WT M++GLA HG+G+KALELF +MQ E + P++
Sbjct: 340  IDMYCKCGSIERASRVFKEINKKDVTVWTTMITGLAFHGYGSKALELFSEMQ-EDVSPDD 398

Query: 181  VTLLAALTACAHGGLVDQGVRIFQSMKHVYGIAPGVEHYGCLVDVLTRSGRLMEAMNVIQ 360
            VT ++ L+AC+H GLVDQG+++F SM   YGI PGVEHYGCLVD+L RSGRL EA ++I 
Sbjct: 399  VTFVSVLSACSHSGLVDQGIKVFSSMTD-YGIEPGVEHYGCLVDLLARSGRLSEAKDIID 457

Query: 361  MMPVKPSSSIWGSVLSAAKTCRNMKLAEDAXXXXXXXXXXXXGGYILLSNVYAACRRWTY 540
             MP+KPS SIWG++L+A +   +++LAE A            GGY LLSN+YAA  RW+Y
Sbjct: 458  QMPMKPSRSIWGAMLNACQAQGDVELAEIASRELLNLDPEEEGGYTLLSNIYAASGRWSY 517

Query: 541  SGKIRGVMETKGAKKLPGCSSVVVNGLVHYFFSSDKRHTRWPDIYIMLCNLHREMSSG 714
            S KIR  ME++G KK  GCSSVVV+G+VH F S+DK H  W DI  +L  L  EM  G
Sbjct: 518  SKKIRETMESRGVKKTAGCSSVVVDGVVHNFISADKCHPGWVDISSILNCLKNEMKPG 575



 Score = 57.0 bits (136), Expect = 6e-06
 Identities = 36/138 (26%), Positives = 68/138 (49%), Gaps = 7/138 (5%)
 Frame = +1

Query: 16  KCGSIERARVVFEMVSERDITLWTAMMSGLALHGHGTKALELFWDMQREGLLPNNVTLLA 195
           K G +E+AR+ F  +  RDI  W ++++G A  G      EL  DM  E ++P+ VT+++
Sbjct: 244 KVGELEQARLFFYQMPCRDIVSWNSLVTGYACRGDFASVKELIVDMVMEKVIPDTVTMIS 303

Query: 196 ALTACAHGGLVDQG-------VRIFQSMKHVYGIAPGVEHYGCLVDVLTRSGRLMEAMNV 354
            ++A    G +DQG       +R+   +    G A        L+D+  + G +  A  V
Sbjct: 304 LVSAATESGALDQGRWAHGWVIRMQIKLDAFLGSA--------LIDMYCKCGSIERASRV 355

Query: 355 IQMMPVKPSSSIWGSVLS 408
            + +  K   ++W ++++
Sbjct: 356 FKEIN-KKDVTVWTTMIT 372


>ref|NP_187126.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
            gi|75207287|sp|Q9SR01.1|PP212_ARATH RecName:
            Full=Pentatricopeptide repeat-containing protein
            At3g04750, mitochondrial; Flags: Precursor
            gi|6175175|gb|AAF04901.1|AC011437_16 hypothetical protein
            [Arabidopsis thaliana] gi|332640610|gb|AEE74131.1|
            pentatricopeptide repeat-containing protein [Arabidopsis
            thaliana]
          Length = 661

 Score =  241 bits (614), Expect = 2e-61
 Identities = 120/237 (50%), Positives = 162/237 (68%), Gaps = 2/237 (0%)
 Frame = +1

Query: 1    IDMYCKCGSIERARVVFEMVSERDITLWTAMMSGLALHGHGTKALELFWDMQREGLLPNN 180
            IDMYCKCG IERA +VF+  +E+D+ LWT+M++GLA HG+G +AL+LF  MQ EG+ PNN
Sbjct: 410  IDMYCKCGIIERAFMVFKTATEKDVALWTSMITGLAFHGNGQQALQLFGRMQEEGVTPNN 469

Query: 181  VTLLAALTACAHGGLVDQGVRIFQSMKHVYGIAPGVEHYGCLVDVLTRSGRLMEAMNVIQ 360
            VTLLA LTAC+H GLV++G+ +F  MK  +G  P  EHYG LVD+L R+GR+ EA +++Q
Sbjct: 470  VTLLAVLTACSHSGLVEEGLHVFNHMKDKFGFDPETEHYGSLVDLLCRAGRVEEAKDIVQ 529

Query: 361  -MMPVKPSSSIWGSVLSAAKTCRNMKLAEDAXXXXXXXXXXXXGGYILLSNVYAACRRWT 537
              MP++PS S+WGS+LSA +   +++ AE A            GGY+LLSN+YA   RW 
Sbjct: 530  KKMPMRPSQSMWGSILSACRGGEDIETAELALTELLKLEPEKEGGYVLLSNIYATVGRWG 589

Query: 538  YSGKIRGVMETKGAKKLPGCSSVV-VNGLVHYFFSSDKRHTRWPDIYIMLCNLHREM 705
            YS K R  ME +G KK  G SSVV V GL  +  +  + H RW +I  +L +L+ EM
Sbjct: 590  YSDKTREAMENRGVKKTAGYSSVVGVEGLHRFVAAEKQNHPRWTEIKRILQHLYNEM 646