BLASTX nr result

ID: Dioscorea21_contig00025502 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Dioscorea21_contig00025502
         (276 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAG50698.1|AC079604_5 copia-type polyprotein, putative [Arabi...   152   4e-35
emb|CAA69272.1| lectin receptor kinase [Arabidopsis thaliana]         151   5e-35
emb|CAB75469.1| copia-type reverse transcriptase-like protein [A...   151   5e-35
gb|AAG60117.1|AC073555_1 copia-type polyprotein, putative [Arabi...   151   6e-35
emb|CAB71063.1| copia-type polyprotein [Arabidopsis thaliana]         150   1e-34

>gb|AAG50698.1|AC079604_5 copia-type polyprotein, putative [Arabidopsis thaliana]
            gi|12321387|gb|AAG50765.1|AC079131_10 copia-type
            polyprotein, putative [Arabidopsis thaliana]
          Length = 1320

 Score =  152 bits (383), Expect = 4e-35
 Identities = 72/92 (78%), Positives = 83/92 (90%)
 Frame = +1

Query: 1    GKKPIAVKWIYKAKKNFKGEVEKYKARLVAKGFTQKAGIDYDEVFAPVARMETVRLIIAM 180
            G K I VKW+YKAKKN KGEVE+YKARLVAKG++Q+AGIDYDEVFAPVAR+ETVRLII++
Sbjct: 843  GHKAIGVKWVYKAKKNSKGEVERYKARLVAKGYSQRAGIDYDEVFAPVARLETVRLIISL 902

Query: 181  AAQQRWKLFLMDVKSAFLNGVLEEEVYVNQPQ 276
            AAQ +WK+  MDVKSAFLNG LEEEVY+ QPQ
Sbjct: 903  AAQNKWKIHQMDVKSAFLNGDLEEEVYIEQPQ 934


>emb|CAA69272.1| lectin receptor kinase [Arabidopsis thaliana]
          Length = 623

 Score =  151 bits (382), Expect = 5e-35
 Identities = 71/92 (77%), Positives = 83/92 (90%)
 Frame = +1

Query: 1   GKKPIAVKWIYKAKKNFKGEVEKYKARLVAKGFTQKAGIDYDEVFAPVARMETVRLIIAM 180
           G K I VKW+YKAKKN KGEVE+YKARLVAKG++Q+AGIDYDE+FAPVAR+ETVRLII++
Sbjct: 372 GHKAIGVKWVYKAKKNSKGEVERYKARLVAKGYSQRAGIDYDEIFAPVARLETVRLIISL 431

Query: 181 AAQQRWKLFLMDVKSAFLNGVLEEEVYVNQPQ 276
           AAQ +WK+  MDVKSAFLNG LEEEVY+ QPQ
Sbjct: 432 AAQNKWKIHQMDVKSAFLNGDLEEEVYIEQPQ 463


>emb|CAB75469.1| copia-type reverse transcriptase-like protein [Arabidopsis thaliana]
          Length = 1272

 Score =  151 bits (382), Expect = 5e-35
 Identities = 71/92 (77%), Positives = 83/92 (90%)
 Frame = +1

Query: 1    GKKPIAVKWIYKAKKNFKGEVEKYKARLVAKGFTQKAGIDYDEVFAPVARMETVRLIIAM 180
            G K I VKW+YKAKKN KGEVE+YKARLVAKG++Q+AGIDYDE+FAPVAR+ETVRLII++
Sbjct: 875  GHKAIGVKWVYKAKKNSKGEVERYKARLVAKGYSQRAGIDYDEIFAPVARLETVRLIISL 934

Query: 181  AAQQRWKLFLMDVKSAFLNGVLEEEVYVNQPQ 276
            AAQ +WK+  MDVKSAFLNG LEEEVY+ QPQ
Sbjct: 935  AAQNKWKIHQMDVKSAFLNGDLEEEVYIEQPQ 966


>gb|AAG60117.1|AC073555_1 copia-type polyprotein, putative [Arabidopsis thaliana]
          Length = 1352

 Score =  151 bits (381), Expect = 6e-35
 Identities = 72/92 (78%), Positives = 82/92 (89%)
 Frame = +1

Query: 1    GKKPIAVKWIYKAKKNFKGEVEKYKARLVAKGFTQKAGIDYDEVFAPVARMETVRLIIAM 180
            G K I VKW+YKAKKN KGEVE+YKARLVAKG+ Q+AGIDYDEVFAPVAR+ETVRLII++
Sbjct: 875  GHKTIGVKWVYKAKKNSKGEVERYKARLVAKGYIQRAGIDYDEVFAPVARLETVRLIISL 934

Query: 181  AAQQRWKLFLMDVKSAFLNGVLEEEVYVNQPQ 276
            AAQ +WK+  MDVKSAFLNG LEEEVY+ QPQ
Sbjct: 935  AAQNKWKIHQMDVKSAFLNGDLEEEVYIEQPQ 966


>emb|CAB71063.1| copia-type polyprotein [Arabidopsis thaliana]
          Length = 1352

 Score =  150 bits (379), Expect = 1e-34
 Identities = 71/92 (77%), Positives = 82/92 (89%)
 Frame = +1

Query: 1    GKKPIAVKWIYKAKKNFKGEVEKYKARLVAKGFTQKAGIDYDEVFAPVARMETVRLIIAM 180
            G K I VKW+YKAKKN KGEVE+YKARLVAKG++Q+ GIDYDEVFAPVAR+ETVRLII++
Sbjct: 875  GHKAIGVKWVYKAKKNSKGEVERYKARLVAKGYSQRVGIDYDEVFAPVARLETVRLIISL 934

Query: 181  AAQQRWKLFLMDVKSAFLNGVLEEEVYVNQPQ 276
            AAQ +WK+  MDVKSAFLNG LEEEVY+ QPQ
Sbjct: 935  AAQNKWKIHQMDVKSAFLNGDLEEEVYIEQPQ 966


Top