BLASTX nr result

ID: Dioscorea21_contig00024993 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Dioscorea21_contig00024993
         (332 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AEN99832.1| chlororespiratory reduction 4 [Capsella bursa-pas...    59   4e-07
ref|XP_002882007.1| hypothetical protein ARALYDRAFT_483672 [Arab...    57   1e-06
ref|NP_182060.2| chlororespiratory reduction 4 protein [Arabidop...    57   1e-06
gb|AAB82628.1| hypothetical protein [Arabidopsis thaliana]             57   1e-06
gb|AEN99835.1| chlororespiratory reduction 4, partial [Lepidium ...    57   2e-06

>gb|AEN99832.1| chlororespiratory reduction 4 [Capsella bursa-pastoris]
          Length = 617

 Score = 58.9 bits (141), Expect = 4e-07
 Identities = 32/86 (37%), Positives = 41/86 (47%)
 Frame = +2

Query: 71  DPFLYNALIKASSNGSNPLDXXXXXXXXXXXGVSPDPFXXXXXXXXXXXXXXXXXXXXXH 250
           DPFL+NA+IK+ S+G +P             GVS D F                     H
Sbjct: 89  DPFLWNAVIKSHSHGKDPKQALLLFCLMLENGVSVDKFSMSLVLKACSRLGFVKGGLQIH 148

Query: 251 ALILKTGLSLNLYLQNVLIGFYSKCG 328
            ++ KTGL  +L+LQN LIG Y KCG
Sbjct: 149 GILRKTGLCSDLFLQNCLIGLYLKCG 174


>ref|XP_002882007.1| hypothetical protein ARALYDRAFT_483672 [Arabidopsis lyrata subsp.
           lyrata] gi|297327846|gb|EFH58266.1| hypothetical protein
           ARALYDRAFT_483672 [Arabidopsis lyrata subsp. lyrata]
          Length = 606

 Score = 57.4 bits (137), Expect = 1e-06
 Identities = 32/86 (37%), Positives = 40/86 (46%)
 Frame = +2

Query: 71  DPFLYNALIKASSNGSNPLDXXXXXXXXXXXGVSPDPFXXXXXXXXXXXXXXXXXXXXXH 250
           DPFL+NA+IK+ S+G +P             GVS D F                     H
Sbjct: 78  DPFLWNAVIKSHSHGKDPRQALLLFCLMLENGVSVDKFSLSLVLKACSRLGFVKGGMQIH 137

Query: 251 ALILKTGLSLNLYLQNVLIGFYSKCG 328
             + KTGL  +L+LQN LIG Y KCG
Sbjct: 138 GFLRKTGLWSDLFLQNCLIGLYLKCG 163


>ref|NP_182060.2| chlororespiratory reduction 4 protein [Arabidopsis thaliana]
           gi|218546767|sp|O22137.2|PP202_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At2g45350, chloroplastic; AltName: Full=Protein
           CHLORORESPIRATORY REDUCTION 4; Flags: Precursor
           gi|330255448|gb|AEC10542.1| chlororespiratory reduction
           4 protein [Arabidopsis thaliana]
          Length = 613

 Score = 57.4 bits (137), Expect = 1e-06
 Identities = 32/86 (37%), Positives = 40/86 (46%)
 Frame = +2

Query: 71  DPFLYNALIKASSNGSNPLDXXXXXXXXXXXGVSPDPFXXXXXXXXXXXXXXXXXXXXXH 250
           DPFL+NA+IK+ S+G +P             GVS D F                     H
Sbjct: 85  DPFLWNAVIKSHSHGKDPRQALLLLCLMLENGVSVDKFSLSLVLKACSRLGFVKGGMQIH 144

Query: 251 ALILKTGLSLNLYLQNVLIGFYSKCG 328
             + KTGL  +L+LQN LIG Y KCG
Sbjct: 145 GFLKKTGLWSDLFLQNCLIGLYLKCG 170


>gb|AAB82628.1| hypothetical protein [Arabidopsis thaliana]
          Length = 606

 Score = 57.4 bits (137), Expect = 1e-06
 Identities = 32/86 (37%), Positives = 40/86 (46%)
 Frame = +2

Query: 71  DPFLYNALIKASSNGSNPLDXXXXXXXXXXXGVSPDPFXXXXXXXXXXXXXXXXXXXXXH 250
           DPFL+NA+IK+ S+G +P             GVS D F                     H
Sbjct: 78  DPFLWNAVIKSHSHGKDPRQALLLLCLMLENGVSVDKFSLSLVLKACSRLGFVKGGMQIH 137

Query: 251 ALILKTGLSLNLYLQNVLIGFYSKCG 328
             + KTGL  +L+LQN LIG Y KCG
Sbjct: 138 GFLKKTGLWSDLFLQNCLIGLYLKCG 163


>gb|AEN99835.1| chlororespiratory reduction 4, partial [Lepidium sativum]
          Length = 597

 Score = 57.0 bits (136), Expect = 2e-06
 Identities = 33/86 (38%), Positives = 42/86 (48%)
 Frame = +2

Query: 71  DPFLYNALIKASSNGSNPLDXXXXXXXXXXXGVSPDPFXXXXXXXXXXXXXXXXXXXXXH 250
           DPFL+NA+IK+ S+G++P             GVS D F                     H
Sbjct: 69  DPFLWNAVIKSHSHGTDPRRSLFLFCLMLENGVSVDKFSLSLVLKACSRLGFVKAGMXIH 128

Query: 251 ALILKTGLSLNLYLQNVLIGFYSKCG 328
             + KTGL  +L+LQN LIG Y KCG
Sbjct: 129 GFLRKTGLWSDLFLQNCLIGLYLKCG 154


Top