BLASTX nr result
ID: Dioscorea21_contig00024738
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dioscorea21_contig00024738
(527 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_003551036.1| PREDICTED: pentatricopeptide repeat-containi... 160 1e-37
ref|XP_002523554.1| pentatricopeptide repeat-containing protein,... 156 2e-36
ref|XP_002277337.2| PREDICTED: pentatricopeptide repeat-containi... 154 1e-35
ref|NP_001049195.1| Os03g0185200 [Oryza sativa Japonica Group] g... 144 1e-32
gb|ABF94353.1| Mitochondrial import inner membrane translocase s... 144 1e-32
>ref|XP_003551036.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g39350-like [Glycine max]
Length = 619
Score = 160 bits (405), Expect = 1e-37
Identities = 86/175 (49%), Positives = 115/175 (65%)
Frame = +2
Query: 2 GFGIKSSKPDPQAFYSAAGAALVVMYAGGGEITAAERVFRLMDHDDVVTWNAMIVGFARA 181
G+G+K D FY +AGAAL+++YAG G + A+ VF MD DVVTWNAMI G
Sbjct: 297 GYGLKIMCGD--VFYRSAGAALLMLYAGWGRLDCADNVFWRMDKSDVVTWNAMIFGLVDV 354
Query: 182 GKGDVAMEHFKEMQARGIGHDQTTLATVLIVCDLKQGREIHALRLRSYYESDTLLCDNAL 361
G D+A++ F+EMQ RG+G D T++++L VCDL+ G+EIHA +R S + NAL
Sbjct: 355 GLVDLALDCFREMQGRGVGIDGRTISSILPVCDLRCGKEIHAY-VRKCNFSGVIPVYNAL 413
Query: 362 MCMYSRLGCIDDASSIFRTMSVKDLVSWNTIIGGCGSHGRAKDSIRLFHDMVNSG 526
+ MYS GCI A S+F TM +DLVSWNTIIGG G+HG + ++ L +M SG
Sbjct: 414 IHMYSIRGCIAYAYSVFSTMVARDLVSWNTIIGGFGTHGLGQTALELLQEMSGSG 468
Score = 70.1 bits (170), Expect = 2e-10
Identities = 48/160 (30%), Positives = 79/160 (49%), Gaps = 10/160 (6%)
Frame = +2
Query: 77 YAGGGEITAAERVFRLMDHDDVVTWNAMIVGFARAGKGDVAMEHFKEMQARG-IGHDQTT 253
Y G+ A RVF ++ +V++W +I G+A G+ DV++ F++M G + D
Sbjct: 216 YCRMGQCCEASRVFGEIEDPNVISWTILISGYAGVGRHDVSLGIFRQMVNVGMVSPDVDA 275
Query: 254 LATVLIVC----DLKQGREIHALRLR-----SYYESDTLLCDNALMCMYSRLGCIDDASS 406
L+ VL+ C L G+EIH L+ +Y S AL+ +Y+ G +D A +
Sbjct: 276 LSGVLVSCRHLGALASGKEIHGYGLKIMCGDVFYRS----AGAALLMLYAGWGRLDCADN 331
Query: 407 IFRTMSVKDLVSWNTIIGGCGSHGRAKDSIRLFHDMVNSG 526
+F M D+V+WN +I G G ++ F +M G
Sbjct: 332 VFWRMDKSDVVTWNAMIFGLVDVGLVDLALDCFREMQGRG 371
Score = 57.0 bits (136), Expect = 2e-06
Identities = 39/143 (27%), Positives = 64/143 (44%), Gaps = 5/143 (3%)
Frame = +2
Query: 62 ALVVMYAGGGEITAAERVFRLMDHDDVVTWNAMIVGFARAGKGDVAMEHFKEMQARGIGH 241
AL+ MY+ G I A VF M D+V+WN +I GF G G A+E +EM G+
Sbjct: 412 ALIHMYSIRGCIAYAYSVFSTMVARDLVSWNTIIGGFGTHGLGQTALELLQEMSGSGVRP 471
Query: 242 DQTTLATVLIVCD----LKQGREIHALRLRSYYESDTLLCDNALMCMYSRLGCIDDASSI 409
D T + L C + +G E+ + + + + ++ M +R G ++DA
Sbjct: 472 DLVTFSCALSACSHSGLVNEGIELFYRMTKDFSMTPAREHFSCVVDMLARAGRLEDAFHF 531
Query: 410 FRTMSVK-DLVSWNTIIGGCGSH 475
M + + W ++ C H
Sbjct: 532 INQMPQEPNNHVWGALLAACQEH 554
>ref|XP_002523554.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis] gi|223537116|gb|EEF38749.1| pentatricopeptide
repeat-containing protein, putative [Ricinus communis]
Length = 611
Score = 156 bits (394), Expect = 2e-36
Identities = 83/175 (47%), Positives = 111/175 (63%)
Frame = +2
Query: 2 GFGIKSSKPDPQAFYSAAGAALVVMYAGGGEITAAERVFRLMDHDDVVTWNAMIVGFARA 181
G+G K FYS+AGAAL+ MYA G I A VF LMD D+VTWNAMI+GF
Sbjct: 288 GYGTKMETNT--VFYSSAGAALLTMYAKCGRIQDAINVFELMDKSDIVTWNAMILGFVEL 345
Query: 182 GKGDVAMEHFKEMQARGIGHDQTTLATVLIVCDLKQGREIHALRLRSYYESDTLLCDNAL 361
G A+E F+EMQ I +DQTT++T+L VCDL+ G IHA +S S + NA+
Sbjct: 346 DLGKQAIECFREMQRMDIKNDQTTISTILPVCDLQYGNPIHAYVRKSITLSSVVTVWNAV 405
Query: 362 MCMYSRLGCIDDASSIFRTMSVKDLVSWNTIIGGCGSHGRAKDSIRLFHDMVNSG 526
+ MY + GC+ A +IF +M KD+VSWNT+IGG G HG + +++L +M+ SG
Sbjct: 406 IHMYCKCGCVRSAYTIFCSMPNKDVVSWNTMIGGFGMHGHGQAALKLLKEMILSG 460
Score = 62.8 bits (151), Expect = 3e-08
Identities = 45/154 (29%), Positives = 74/154 (48%), Gaps = 4/154 (2%)
Frame = +2
Query: 65 LVVMYAGGGEITAAERVFRLMDHDDVVTWNAMIVGFARAGKGDVAMEHFKEMQARGIGHD 244
L+ MYA + +A+R+F M +V W A+ + R G D ++++ M+ + D
Sbjct: 36 LIQMYADCDHLFSAQRLFDKMPQPNVYAWTAIFGFYLRHGMYDKCVQNYGFMKYSDVLPD 95
Query: 245 QTTLATVLIVCD----LKQGREIHALRLRSYYESDTLLCDNALMCMYSRLGCIDDASSIF 412
VL C + G IH + ES+ +C N+L+ MY + G A +F
Sbjct: 96 NYVFPKVLRACTQLLWFEGGIWIHKDVIVCGCESNLQVC-NSLIDMYVKCGNARSARLVF 154
Query: 413 RTMSVKDLVSWNTIIGGCGSHGRAKDSIRLFHDM 514
M +DL SWN++I G S+G A ++ L + M
Sbjct: 155 EEMEERDLFSWNSMISGYVSNGLADLAVELLNCM 188
Score = 61.6 bits (148), Expect = 7e-08
Identities = 40/143 (27%), Positives = 67/143 (46%), Gaps = 5/143 (3%)
Frame = +2
Query: 62 ALVVMYAGGGEITAAERVFRLMDHDDVVTWNAMIVGFARAGKGDVAMEHFKEMQARGIGH 241
A++ MY G + +A +F M + DVV+WN MI GF G G A++ KEM GI
Sbjct: 404 AVIHMYCKCGCVRSAYTIFCSMPNKDVVSWNTMIGGFGMHGHGQAALKLLKEMILSGIFP 463
Query: 242 DQTTLATVLIVCD----LKQGREIHALRLRSYYESDTLLCDNALMCMYSRLGCIDDASSI 409
+ TT +VL C + +G + Y + + + ++ M +R G DA +
Sbjct: 464 NSTTFTSVLSACSHSGLVDEGFRLFRSMTEDYSITPRMEHYSCIVDMLARAGQFADAVTF 523
Query: 410 FRTMSVK-DLVSWNTIIGGCGSH 475
M ++ D W ++ C ++
Sbjct: 524 IHKMPLEPDKSIWGALLAACRAY 546
Score = 60.5 bits (145), Expect = 2e-07
Identities = 39/152 (25%), Positives = 63/152 (41%)
Frame = +2
Query: 62 ALVVMYAGGGEITAAERVFRLMDHDDVVTWNAMIVGFARAGKGDVAMEHFKEMQARGIGH 241
+L+ MY G +A VF M+ D+ +WN+MI G+ G D+A+E M+ G
Sbjct: 136 SLIDMYVKCGNARSARLVFEEMEERDLFSWNSMISGYVSNGLADLAVELLNCMRLDGFEP 195
Query: 242 DQTTLATVLIVCDLKQGREIHALRLRSYYESDTLLCDNALMCMYSRLGCIDDASSIFRTM 421
D T N LM Y ++G D+A + + +
Sbjct: 196 DVVTW--------------------------------NTLMDAYCQMGRFDEAWEVLKQI 223
Query: 422 SVKDLVSWNTIIGGCGSHGRAKDSIRLFHDMV 517
+++SW T+I G S+R+F DM+
Sbjct: 224 EQPNIISWTTLISSYSKIGEHDMSLRVFQDMI 255
>ref|XP_002277337.2| PREDICTED: pentatricopeptide repeat-containing protein
At5g39350-like [Vitis vinifera]
Length = 634
Score = 154 bits (388), Expect = 1e-35
Identities = 84/174 (48%), Positives = 113/174 (64%)
Frame = +2
Query: 2 GFGIKSSKPDPQAFYSAAGAALVVMYAGGGEITAAERVFRLMDHDDVVTWNAMIVGFARA 181
G+GI+S D +FY +AGAAL+ MY I A VF LMD DVVTWNAMI+GF
Sbjct: 316 GYGIRSV--DSSSFYKSAGAALLTMYVKCKRIQDALNVFELMDRFDVVTWNAMILGFVDL 373
Query: 182 GKGDVAMEHFKEMQARGIGHDQTTLATVLIVCDLKQGREIHALRLRSYYESDTLLCDNAL 361
G +A+E F +MQ GI ++Q T++TVL CDLK G+++HA ++ + S + NAL
Sbjct: 374 EMGHLALECFSKMQRSGIMNNQITISTVLPACDLKSGKQVHAYITKNSF-SSVIPVWNAL 432
Query: 362 MCMYSRLGCIDDASSIFRTMSVKDLVSWNTIIGGCGSHGRAKDSIRLFHDMVNS 523
+ MYS+ GCI A SIF M +DLVSWNT+IGG G HG + +++L DM +S
Sbjct: 433 IHMYSKCGCIGTAYSIFSNMISRDLVSWNTMIGGFGMHGLGQFALQLLRDMSHS 486
Score = 72.0 bits (175), Expect = 5e-11
Identities = 44/154 (28%), Positives = 79/154 (51%), Gaps = 4/154 (2%)
Frame = +2
Query: 65 LVVMYAGGGEITAAERVFRLMDHDDVVTWNAMIVGFARAGKGDVAMEHFKEMQARGIGHD 244
LV MYA G++ +A+ +F + +V W A++ ++R G D + + EM+ +G+ D
Sbjct: 64 LVQMYADCGDLGSAQALFDKLSQPNVFAWTAILGFYSRNGLSDECVRTYSEMKLKGVLPD 123
Query: 245 QTTLATVLIVCD----LKQGREIHALRLRSYYESDTLLCDNALMCMYSRLGCIDDASSIF 412
+ V C L+ G ++H + E D +C N+L+ MYS+ G + +F
Sbjct: 124 KYVFPKVFRACGQLLWLEVGIQVHKDVVICGCEFDLQVC-NSLIDMYSKSGDVGSGRRVF 182
Query: 413 RTMSVKDLVSWNTIIGGCGSHGRAKDSIRLFHDM 514
M +D++SWN++I G +G + S+ L M
Sbjct: 183 DEMVERDVLSWNSMISGYVCNGFLEFSVELLASM 216
Score = 59.3 bits (142), Expect = 3e-07
Identities = 38/153 (24%), Positives = 67/153 (43%)
Frame = +2
Query: 62 ALVVMYAGGGEITAAERVFRLMDHDDVVTWNAMIVGFARAGKGDVAMEHFKEMQARGIGH 241
+L+ MY+ G++ + RVF M DV++WN+MI G+ G + ++E M+ RG
Sbjct: 164 SLIDMYSKSGDVGSGRRVFDEMVERDVLSWNSMISGYVCNGFLEFSVELLASMRIRGFEP 223
Query: 242 DQTTLATVLIVCDLKQGREIHALRLRSYYESDTLLCDNALMCMYSRLGCIDDASSIFRTM 421
D T N +M Y R+G D+A IF +
Sbjct: 224 DMVTW--------------------------------NTVMDAYCRMGLCDEAWEIFEQI 251
Query: 422 SVKDLVSWNTIIGGCGSHGRAKDSIRLFHDMVN 520
+++S T++ G G + S+ +F +M++
Sbjct: 252 KEPNIISLTTLVSGYSRIGNHEKSLGIFREMMS 284
>ref|NP_001049195.1| Os03g0185200 [Oryza sativa Japonica Group]
gi|113547666|dbj|BAF11109.1| Os03g0185200 [Oryza sativa
Japonica Group]
Length = 473
Score = 144 bits (362), Expect = 1e-32
Identities = 73/164 (44%), Positives = 107/164 (65%), Gaps = 1/164 (0%)
Frame = +2
Query: 38 AFYSAAGAALVVMYAGGGEITAAERVFRLMDHDDVVTWNAMIVGFARAGKGDVAMEHFKE 217
AFY++AG ALV +YA G ++AA+R+F MD +DVV+WNAMI GFA AG A + F+E
Sbjct: 160 AFYASAGPALVALYAMCGRVSAAKRIFDRMDGEDVVSWNAMIGGFAGAGMNGEAWDCFRE 219
Query: 218 MQARGIGHDQTTLATVLIVCDLKQGREIHALRLRSYYES-DTLLCDNALMCMYSRLGCID 394
M+ARG+ + T VL CDL+ GR++H +R++ +S + NALM MYSR+GC+D
Sbjct: 220 MRARGVRGNARTAVAVLGACDLESGRQVHGHMVRNHGDSGSNAILWNALMNMYSRVGCVD 279
Query: 395 DASSIFRTMSVKDLVSWNTIIGGCGSHGRAKDSIRLFHDMVNSG 526
+A +F + KD+VSWN +IG +G + ++ L M+ G
Sbjct: 280 NAEHVFFEIERKDVVSWNVMIGAFAKNGHGERALELVDAMLRCG 323
Score = 59.3 bits (142), Expect = 3e-07
Identities = 43/144 (29%), Positives = 66/144 (45%), Gaps = 6/144 (4%)
Frame = +2
Query: 62 ALVVMYAGGGEITAAERVFRLMDHDDVVTWNAMIVGFARAGKGDVAMEHFKEMQARGIGH 241
AL+ MY+ G + AE VF ++ DVV+WN MI FA+ G G+ A+E M G+
Sbjct: 267 ALMNMYSRVGCVDNAEHVFFEIERKDVVSWNVMIGAFAKNGHGERALELVDAMLRCGMQP 326
Query: 242 DQTTLATVLIVCDLKQGREIHALRLRSYYESDTLLCDNALMC-----MYSRLGCIDDASS 406
D T T+L+ C G L L + ++ L C + SR G +A+
Sbjct: 327 DSVTFTTLLMAC-CHCGLVDEGLALFERFVENSALIPTMEQCACIVDLLSRAGRFREAAG 385
Query: 407 IFRTMSVK-DLVSWNTIIGGCGSH 475
M ++ + V W ++ G H
Sbjct: 386 FIDQMPIRPNAVVWGALLSGSRMH 409
>gb|ABF94353.1| Mitochondrial import inner membrane translocase subunit Tim17
family protein, expressed [Oryza sativa Japonica Group]
gi|125585187|gb|EAZ25851.1| hypothetical protein
OsJ_09691 [Oryza sativa Japonica Group]
Length = 671
Score = 144 bits (362), Expect = 1e-32
Identities = 73/164 (44%), Positives = 107/164 (65%), Gaps = 1/164 (0%)
Frame = +2
Query: 38 AFYSAAGAALVVMYAGGGEITAAERVFRLMDHDDVVTWNAMIVGFARAGKGDVAMEHFKE 217
AFY++AG ALV +YA G ++AA+R+F MD +DVV+WNAMI GFA AG A + F+E
Sbjct: 160 AFYASAGPALVALYAMCGRVSAAKRIFDRMDGEDVVSWNAMIGGFAGAGMNGEAWDCFRE 219
Query: 218 MQARGIGHDQTTLATVLIVCDLKQGREIHALRLRSYYES-DTLLCDNALMCMYSRLGCID 394
M+ARG+ + T VL CDL+ GR++H +R++ +S + NALM MYSR+GC+D
Sbjct: 220 MRARGVRGNARTAVAVLGACDLESGRQVHGHMVRNHGDSGSNAILWNALMNMYSRVGCVD 279
Query: 395 DASSIFRTMSVKDLVSWNTIIGGCGSHGRAKDSIRLFHDMVNSG 526
+A +F + KD+VSWN +IG +G + ++ L M+ G
Sbjct: 280 NAEHVFFEIERKDVVSWNVMIGAFAKNGHGERALELVDAMLRCG 323
Score = 59.3 bits (142), Expect = 3e-07
Identities = 43/144 (29%), Positives = 66/144 (45%), Gaps = 6/144 (4%)
Frame = +2
Query: 62 ALVVMYAGGGEITAAERVFRLMDHDDVVTWNAMIVGFARAGKGDVAMEHFKEMQARGIGH 241
AL+ MY+ G + AE VF ++ DVV+WN MI FA+ G G+ A+E M G+
Sbjct: 267 ALMNMYSRVGCVDNAEHVFFEIERKDVVSWNVMIGAFAKNGHGERALELVDAMLRCGMQP 326
Query: 242 DQTTLATVLIVCDLKQGREIHALRLRSYYESDTLLCDNALMC-----MYSRLGCIDDASS 406
D T T+L+ C G L L + ++ L C + SR G +A+
Sbjct: 327 DSVTFTTLLMAC-CHCGLVDEGLALFERFVENSALIPTMEQCACIVDLLSRAGRFREAAG 385
Query: 407 IFRTMSVK-DLVSWNTIIGGCGSH 475
M ++ + V W ++ G H
Sbjct: 386 FIDQMPIRPNAVVWGALLSGSRMH 409