BLASTX nr result

ID: Dioscorea21_contig00024669 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Dioscorea21_contig00024669
         (311 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002520828.1| pentatricopeptide repeat-containing protein,...   151   5e-35
ref|XP_003534752.1| PREDICTED: pentatricopeptide repeat-containi...   141   6e-32
emb|CBI16742.3| unnamed protein product [Vitis vinifera]              139   2e-31
emb|CAN79322.1| hypothetical protein VITISV_018985 [Vitis vinifera]   139   2e-31
gb|EAY96283.1| hypothetical protein OsI_18181 [Oryza sativa Indi...   128   4e-28

>ref|XP_002520828.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223539959|gb|EEF41537.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 656

 Score =  151 bits (382), Expect = 5e-35
 Identities = 72/102 (70%), Positives = 85/102 (83%)
 Frame = +3

Query: 6   LTNALVSMYSRSGDLASAHLAFKELVIKDVVSWTSMILAYSNHGCGEYALQVFAQMLRQG 185
           L N LV+ YSR GD+ SA   F +L IKD+VSWT+MILAYSNHGCG +ALQVFA+MLR G
Sbjct: 399 LANGLVTTYSRCGDVLSARFIFDQLEIKDIVSWTAMILAYSNHGCGPHALQVFARMLRSG 458

Query: 186 GKPDGITFVGVLSACSHIGLVRKGRRIFNSMSLAYKVEPKAE 311
            KPDGITFVG+LSACSH GLV+KG+ +F+SMS AY VEP+AE
Sbjct: 459 AKPDGITFVGLLSACSHAGLVKKGQMLFDSMSCAYGVEPRAE 500


>ref|XP_003534752.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09410-like [Glycine max]
          Length = 669

 Score =  141 bits (355), Expect = 6e-32
 Identities = 67/102 (65%), Positives = 85/102 (83%)
 Frame = +3

Query: 6   LTNALVSMYSRSGDLASAHLAFKELVIKDVVSWTSMILAYSNHGCGEYALQVFAQMLRQG 185
           LTNAL+++YS+SGDL SA L F++L  KDVVSWT+MI+AYSNHG G +ALQVFA+ML  G
Sbjct: 413 LTNALITLYSKSGDLCSARLVFEQLKSKDVVSWTAMIVAYSNHGHGHHALQVFARMLVSG 472

Query: 186 GKPDGITFVGVLSACSHIGLVRKGRRIFNSMSLAYKVEPKAE 311
            KPD +TFVG+LSACSH+GLV +GRR+F+S+   Y + PKAE
Sbjct: 473 IKPDEVTFVGLLSACSHVGLVHQGRRLFDSIKGTYNLTPKAE 514


>emb|CBI16742.3| unnamed protein product [Vitis vinifera]
          Length = 674

 Score =  139 bits (351), Expect = 2e-31
 Identities = 65/103 (63%), Positives = 87/103 (84%)
 Frame = +3

Query: 3   SLTNALVSMYSRSGDLASAHLAFKELVIKDVVSWTSMILAYSNHGCGEYALQVFAQMLRQ 182
           SL+NAL++MYSR GD++S+ +AF+ L  KDVVSWT+M+LA++ HG G++AL VF  ML+ 
Sbjct: 416 SLSNALITMYSRIGDISSSRIAFESLKAKDVVSWTAMLLAFTYHGHGDHALHVFGHMLKS 475

Query: 183 GGKPDGITFVGVLSACSHIGLVRKGRRIFNSMSLAYKVEPKAE 311
           G KPD ITFVGVLSACSH GLV+KG+++F+SMS AY +EP+AE
Sbjct: 476 GTKPDEITFVGVLSACSHAGLVKKGQKLFDSMSRAYGLEPRAE 518


>emb|CAN79322.1| hypothetical protein VITISV_018985 [Vitis vinifera]
          Length = 932

 Score =  139 bits (351), Expect = 2e-31
 Identities = 65/103 (63%), Positives = 87/103 (84%)
 Frame = +3

Query: 3   SLTNALVSMYSRSGDLASAHLAFKELVIKDVVSWTSMILAYSNHGCGEYALQVFAQMLRQ 182
           SL+NAL++MYSR GD++S+ +AF+ L  KDVVSWT+M+LA++ HG G++AL VF  ML+ 
Sbjct: 322 SLSNALITMYSRIGDISSSRIAFESLKAKDVVSWTAMLLAFTYHGHGDHALHVFGHMLKS 381

Query: 183 GGKPDGITFVGVLSACSHIGLVRKGRRIFNSMSLAYKVEPKAE 311
           G KPD ITFVGVLSACSH GLV+KG+++F+SMS AY +EP+AE
Sbjct: 382 GTKPDEITFVGVLSACSHAGLVKKGQKLFDSMSRAYGLEPRAE 424


>gb|EAY96283.1| hypothetical protein OsI_18181 [Oryza sativa Indica Group]
          Length = 661

 Score =  128 bits (322), Expect = 4e-28
 Identities = 65/103 (63%), Positives = 76/103 (73%)
 Frame = +3

Query: 3   SLTNALVSMYSRSGDLASAHLAFKELVIKDVVSWTSMILAYSNHGCGEYALQVFAQMLRQ 182
           +L N LVSMYSRSGDL+SA LAF+ L  KD ++WTSMI A +NHGC   ALQ FAQMLR 
Sbjct: 408 NLGNTLVSMYSRSGDLSSAWLAFRRLNEKDAITWTSMIQALANHGCAPCALQGFAQMLRC 467

Query: 183 GGKPDGITFVGVLSACSHIGLVRKGRRIFNSMSLAYKVEPKAE 311
           G KP   TF  VLSAC+H+GLV KGR+IF S+S  Y +EP  E
Sbjct: 468 GYKPSSTTFTAVLSACNHVGLVEKGRKIFKSISHVYGLEPTIE 510


Top