BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Dioscorea21_contig00024402
         (393 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ADN33807.1| ty1-copia retrotransposon protein [Cucumis melo s...   200   9e-50
gb|AAC13580.1| contains similarity to retrovirus-related POL pol...    96   2e-18
emb|CAX68207.1| Copia-like retrotransposon [Helianthus annuus]         94   1e-17
emb|CAN66576.1| hypothetical protein VITISV_016964 [Vitis vinifera]    93   2e-17
gb|AAR13298.1| gag-pol polyprotein [Phaseolus vulgaris]                93   3e-17

>gb|ADN33807.1| ty1-copia retrotransposon protein [Cucumis melo subsp. melo]
          Length = 1038

 Score =  200 bits (509), Expect = 9e-50
 Identities = 97/131 (74%), Positives = 106/131 (80%), Gaps = 1/131 (0%)
 Frame = -3

Query: 391 KYEKDNKVVRGHLLNHMVNPLFDLFVTHKSAKEIWNLLEXXXXXXXXXXXY-VVGKWLQF 215
           KY KDNK VRGHLLNHM +P+FDLFV  KSAK+IW+ LE             VVGKWLQF
Sbjct: 89  KYAKDNKTVRGHLLNHMSDPMFDLFVVQKSAKDIWSTLESRYGGDDAGRKKYVVGKWLQF 148

Query: 214 QMIDDKPIMEQVHIYENLTTDVLNEGMKMCEILQANVLLEKFPPSWNDYRNQLKHKKKDL 35
           QM DDKP++EQ+H YENL T+VL+EGMKMCEILQANVLLEKFPPSWNDYRN LKHKKKDL
Sbjct: 149 QMTDDKPVVEQIHEYENLVTNVLSEGMKMCEILQANVLLEKFPPSWNDYRNHLKHKKKDL 208

Query: 34  TLQELISHMRT 2
            L ELISHMRT
Sbjct: 209 KLHELISHMRT 219


>gb|AAC13580.1| contains similarity to retrovirus-related POL polyproteins
           [Arabidopsis thaliana] gi|8843879|dbj|BAA97405.1|
           unnamed protein product [Arabidopsis thaliana]
          Length = 579

 Score = 96.3 bits (238), Expect = 2e-18
 Identities = 45/120 (37%), Positives = 70/120 (58%), Gaps = 1/120 (0%)
 Frame = -3

Query: 364 RGHLLNHMVNPLFDLFVTHKSAKEIWNLLEXXXXXXXXXXXYV-VGKWLQFQMIDDKPIM 188
           +G +LN +VN LFDL+   KS+K +W  LE                K+L F+M+D KPIM
Sbjct: 108 KGLILNRLVNDLFDLYNKAKSSKTLWLTLENKYKTDESGMQRFSTAKFLNFKMVDSKPIM 167

Query: 187 EQVHIYENLTTDVLNEGMKMCEILQANVLLEKFPPSWNDYRNQLKHKKKDLTLQELISHM 8
           EQV   + ++ ++  EGM +C + + N L+EK PP W D++N L  K+K +T  +L+  +
Sbjct: 168 EQVEALQRISQEIELEGMSICNVFKTNCLIEKLPPGWLDFKNYLNFKRKAMTFDDLVRRL 227


>emb|CAX68207.1| Copia-like retrotransposon [Helianthus annuus]
          Length = 1358

 Score = 94.0 bits (232), Expect = 1e-17
 Identities = 44/120 (36%), Positives = 69/120 (57%), Gaps = 1/120 (0%)
 Frame = -3

Query: 361 GHLLNHMVNPLFDLFVTHKSAKEIWNLLEXXXXXXXXXXXY-VVGKWLQFQMIDDKPIME 185
           GH+ N + + L+DL+   KSA+E+W  LE             ++ K+L FQM+DDK I+E
Sbjct: 75  GHIKNSLSDRLYDLYAPIKSARELWKALEDKYKAHEEGTNKYLIAKYLDFQMVDDKSILE 134

Query: 184 QVHIYENLTTDVLNEGMKMCEILQANVLLEKFPPSWNDYRNQLKHKKKDLTLQELISHMR 5
           QVH  + L   +    + + EI Q  V++ K PP W D+  ++ HK +D +L EL+ H+R
Sbjct: 135 QVHELQVLVNKLTALSIPLPEIFQVGVIIAKLPPGWKDFSKRMMHKSEDYSLDELLKHLR 194


>emb|CAN66576.1| hypothetical protein VITISV_016964 [Vitis vinifera]
          Length = 1316

 Score = 93.2 bits (230), Expect = 2e-17
 Identities = 43/121 (35%), Positives = 75/121 (61%), Gaps = 1/121 (0%)
 Frame = -3

Query: 364 RGHLLNHMVNPLFDLFVTHKSAKEIWNLLEXXXXXXXXXXXY-VVGKWLQFQMIDDKPIM 188
           R ++LN + N L++++ + K+AKE+W+ L+             +VGK+L F+MID K ++
Sbjct: 270 RNYMLNGLDNTLYNVYCSLKTAKELWDSLDKKYKTEDAGIKKFIVGKFLDFKMIDSKTVI 329

Query: 187 EQVHIYENLTTDVLNEGMKMCEILQANVLLEKFPPSWNDYRNQLKHKKKDLTLQELISHM 8
            QV   + +  ++ +EGM   +  Q   ++EK PP W D++N LKHK+K++ L+ELI  +
Sbjct: 330 SQVQELQVILHEIHSEGMSFSDSFQVAAVIEKLPPLWKDFKNYLKHKRKEMNLEELIVRL 389

Query: 7   R 5
           R
Sbjct: 390 R 390


>gb|AAR13298.1| gag-pol polyprotein [Phaseolus vulgaris]
          Length = 1290

 Score = 92.8 bits (229), Expect = 3e-17
 Identities = 45/124 (36%), Positives = 78/124 (62%), Gaps = 1/124 (0%)
 Frame = -3

Query: 376 NKVVRGHLLNHMVNPLFDLFVTHKSAKEIWN-LLEXXXXXXXXXXXYVVGKWLQFQMIDD 200
           NKV R  LL+ + N LFD++ ++K+AK+IW+ L+            +V+ K+ +++MI  
Sbjct: 85  NKVCRHTLLSVLSNDLFDVYASYKNAKDIWDSLILKYTAEDIVRQRFVIAKYYRWEMIKG 144

Query: 199 KPIMEQVHIYENLTTDVLNEGMKMCEILQANVLLEKFPPSWNDYRNQLKHKKKDLTLQEL 20
           K I  Q++ Y  L  D+  E +K+ +   + +L+EK P SW DY+ QLKH++K ++L +L
Sbjct: 145 KDIKIQINEYHKLIEDIKTESIKLPDEFVSELLIEKLPQSWTDYKQQLKHRQKQMSLSDL 204

Query: 19  ISHM 8
           I+H+
Sbjct: 205 ITHI 208