BLASTX nr result

ID: Dioscorea21_contig00023490 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Dioscorea21_contig00023490
         (371 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003631305.1| PREDICTED: LOW QUALITY PROTEIN: transcriptio...    62   4e-08
emb|CBI27416.3| unnamed protein product [Vitis vinifera]               62   4e-08
ref|XP_002314910.1| predicted protein [Populus trichocarpa] gi|2...    55   6e-06
ref|XP_002514566.1| conserved hypothetical protein [Ricinus comm...    55   8e-06

>ref|XP_003631305.1| PREDICTED: LOW QUALITY PROTEIN: transcription factor bHLH49-like
           [Vitis vinifera]
          Length = 609

 Score = 62.4 bits (150), Expect = 4e-08
 Identities = 30/66 (45%), Positives = 43/66 (65%), Gaps = 1/66 (1%)
 Frame = -3

Query: 366 IQTGIPAMLNPPDALRKALNSQLSTMNL-YKEPTTQVPNTWDEELRNVVQMTFSANPTIA 190
           IQ G+P + N  DA+R+ +NSQL+ M+  YKE   Q+PN W++EL NVVQM FS    + 
Sbjct: 533 IQVGLPGLGNSSDAIRRTINSQLAAMSGGYKESAPQLPNVWEDELHNVVQMGFSTGAPLN 592

Query: 189 EKPRDG 172
            +  +G
Sbjct: 593 SQDLNG 598


>emb|CBI27416.3| unnamed protein product [Vitis vinifera]
          Length = 496

 Score = 62.4 bits (150), Expect = 4e-08
 Identities = 30/66 (45%), Positives = 43/66 (65%), Gaps = 1/66 (1%)
 Frame = -3

Query: 366 IQTGIPAMLNPPDALRKALNSQLSTMNL-YKEPTTQVPNTWDEELRNVVQMTFSANPTIA 190
           IQ G+P + N  DA+R+ +NSQL+ M+  YKE   Q+PN W++EL NVVQM FS    + 
Sbjct: 420 IQVGLPGLGNSSDAIRRTINSQLAAMSGGYKESAPQLPNVWEDELHNVVQMGFSTGAPLN 479

Query: 189 EKPRDG 172
            +  +G
Sbjct: 480 SQDLNG 485


>ref|XP_002314910.1| predicted protein [Populus trichocarpa] gi|222863950|gb|EEF01081.1|
           predicted protein [Populus trichocarpa]
          Length = 562

 Score = 55.1 bits (131), Expect = 6e-06
 Identities = 27/56 (48%), Positives = 37/56 (66%), Gaps = 1/56 (1%)
 Frame = -3

Query: 366 IQTGIPAMLNPPDALRKALNSQLSTMNL-YKEPTTQVPNTWDEELRNVVQMTFSAN 202
           I T  P M +  D +R+ +NSQL+ M   +KEP  Q+PN WD+EL NVVQMT+  +
Sbjct: 487 IPTAFPGMESHSDIIRRTINSQLTAMTAGFKEPA-QLPNVWDDELHNVVQMTYGTS 541


>ref|XP_002514566.1| conserved hypothetical protein [Ricinus communis]
           gi|223546170|gb|EEF47672.1| conserved hypothetical
           protein [Ricinus communis]
          Length = 566

 Score = 54.7 bits (130), Expect = 8e-06
 Identities = 27/58 (46%), Positives = 39/58 (67%), Gaps = 1/58 (1%)
 Frame = -3

Query: 366 IQTGIPAMLNPPDALRKALNSQLSTMN-LYKEPTTQVPNTWDEELRNVVQMTFSANPT 196
           IQ   P M +  D LR+ ++SQL+ ++ ++KEPT Q+PN WD+EL NVVQM +    T
Sbjct: 489 IQASFPGMESHSDVLRRTISSQLTPLSGVFKEPT-QLPNAWDDELHNVVQMGYGTGTT 545


Top