BLASTX nr result
ID: Dioscorea21_contig00023276
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dioscorea21_contig00023276
(661 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_003551717.1| PREDICTED: pentatricopeptide repeat-containi... 299 3e-79
ref|XP_002326871.1| predicted protein [Populus trichocarpa] gi|2... 281 6e-74
emb|CAN70994.1| hypothetical protein VITISV_038698 [Vitis vinifera] 279 3e-73
ref|XP_002271824.1| PREDICTED: pentatricopeptide repeat-containi... 278 5e-73
ref|XP_002880144.1| pentatricopeptide repeat-containing protein ... 263 3e-68
>ref|XP_003551717.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g44880-like [Glycine max]
Length = 599
Score = 299 bits (766), Expect = 3e-79
Identities = 138/219 (63%), Positives = 179/219 (81%)
Frame = -3
Query: 659 RNVVSWTSLLSGYCKAGDMEAAKVLFDGMKERNLFSWNVMIGGYCQNRQPLLALELFREL 480
RNVVSWTS++SGYC GD+E AK++FD M E+N+F+WN MIGGYCQNR+ ALELFRE+
Sbjct: 251 RNVVSWTSMVSGYCGNGDVENAKLMFDLMPEKNVFTWNAMIGGYCQNRRSHDALELFREM 310
Query: 479 QSGLCSFEPDEVTLVSIIPAIADMGALELGRWIHKYIQKKRMECMGSVSTALVDMYAKCG 300
Q+ S EP+EVT+V ++PA+AD+GAL+LGRWIH++ +K+++ + TAL+DMYAKCG
Sbjct: 311 QTA--SVEPNEVTVVCVLPAVADLGALDLGRWIHRFALRKKLDRSARIGTALIDMYAKCG 368
Query: 299 DVDEAKRVFDGMRERAPSTWNAMINGLAVNGCAEEALDVFREMLSSGQCPNEVTMMGLLS 120
++ +AK F+GM ER ++WNA+ING AVNGCA+EAL+VF M+ G PNEVTM+G+LS
Sbjct: 369 EITKAKLAFEGMTERETASWNALINGFAVNGCAKEALEVFARMIEEGFGPNEVTMIGVLS 428
Query: 119 ACNHGGLVDEGRRLFREMEIYGIEPKVEHYGCMVDLLGR 3
ACNH GLV+EGRR F ME +GI P+VEHYGCMVDLLGR
Sbjct: 429 ACNHCGLVEEGRRWFNAMERFGIAPQVEHYGCMVDLLGR 467
Score = 96.3 bits (238), Expect = 5e-18
Identities = 64/190 (33%), Positives = 101/190 (53%)
Frame = -3
Query: 641 TSLLSGYCKAGDMEAAKVLFDGMKERNLFSWNVMIGGYCQNRQPLLALELFRELQSGLCS 462
T+L+ Y K G + +A+ +FD M R+ SW +I GY + A LF E++
Sbjct: 164 TALVDMYVKFGVLGSARKVFDEMSVRSKVSWTAVIVGYARCGDMSEARRLFDEME----- 218
Query: 461 FEPDEVTLVSIIPAIADMGALELGRWIHKYIQKKRMECMGSVSTALVDMYAKCGDVDEAK 282
+ D V ++I MG + L R + ++++ + T++V Y GDV+ AK
Sbjct: 219 -DRDIVAFNAMIDGYVKMGCVGLARELFNEMRERNVVSW----TSMVSGYCGNGDVENAK 273
Query: 281 RVFDGMRERAPSTWNAMINGLAVNGCAEEALDVFREMLSSGQCPNEVTMMGLLSACNHGG 102
+FD M E+ TWNAMI G N + +AL++FREM ++ PNEVT++ +L A G
Sbjct: 274 LMFDLMPEKNVFTWNAMIGGYCQNRRSHDALELFREMQTASVEPNEVTVVCVLPAVADLG 333
Query: 101 LVDEGRRLFR 72
+D GR + R
Sbjct: 334 ALDLGRWIHR 343
Score = 74.7 bits (182), Expect = 1e-11
Identities = 57/177 (32%), Positives = 81/177 (45%)
Frame = -3
Query: 596 AKVLFDGMKERNLFSWNVMIGGYCQNRQPLLALELFRELQSGLCSFEPDEVTLVSIIPAI 417
A+ F+ R+ F N MI + RQ LFR+L+ F PD T +++
Sbjct: 76 ARRFFNATHTRDTFLCNSMIAAHFAARQFSQPFTLFRDLRRQAPPFTPDGYTFTALVKGC 135
Query: 416 ADMGALELGRWIHKYIQKKRMECMGSVSTALVDMYAKCGDVDEAKRVFDGMRERAPSTWN 237
A A G +H + K + V+TALVDMY K G + A++VFD M R+ +W
Sbjct: 136 ATRVATGEGTLLHGMVLKNGVCFDLYVATALVDMYVKFGVLGSARKVFDEMSVRSKVSWT 195
Query: 236 AMINGLAVNGCAEEALDVFREMLSSGQCPNEVTMMGLLSACNHGGLVDEGRRLFREM 66
A+I G A G EA +F EM + + V ++ G V R LF EM
Sbjct: 196 AVIVGYARCGDMSEARRLFDEM----EDRDIVAFNAMIDGYVKMGCVGLARELFNEM 248
>ref|XP_002326871.1| predicted protein [Populus trichocarpa] gi|222835186|gb|EEE73621.1|
predicted protein [Populus trichocarpa]
Length = 581
Score = 281 bits (720), Expect = 6e-74
Identities = 128/219 (58%), Positives = 173/219 (78%)
Frame = -3
Query: 659 RNVVSWTSLLSGYCKAGDMEAAKVLFDGMKERNLFSWNVMIGGYCQNRQPLLALELFREL 480
RNV+SWTS++ GYC GD+ +A+ LFD M E+NL SWN MIGGYCQN+QP AL+LFREL
Sbjct: 228 RNVISWTSMIYGYCNNGDVLSARFLFDAMPEKNLVSWNAMIGGYCQNKQPHEALKLFREL 287
Query: 479 QSGLCSFEPDEVTLVSIIPAIADMGALELGRWIHKYIQKKRMECMGSVSTALVDMYAKCG 300
QS FEP+EVT+VSI+PAIA +GALELG W+H+++Q+K+++ +V T+LVDMY KCG
Sbjct: 288 QSSTV-FEPNEVTVVSILPAIATLGALELGEWVHRFVQRKKLDAAVNVCTSLVDMYLKCG 346
Query: 299 DVDEAKRVFDGMRERAPSTWNAMINGLAVNGCAEEALDVFREMLSSGQCPNEVTMMGLLS 120
++ +A++VF + ++ +TWNA+ING A+NG A EAL+ F EM G PN++TM G+LS
Sbjct: 347 EISKARKVFSEIPKKETATWNALINGFAMNGLASEALEAFSEMQQEGIKPNDITMTGVLS 406
Query: 119 ACNHGGLVDEGRRLFREMEIYGIEPKVEHYGCMVDLLGR 3
AC+HGGLV+EG+ F+ M G+ PK+EHYGC+VDLLGR
Sbjct: 407 ACSHGGLVEEGKGQFKAMIESGLSPKIEHYGCLVDLLGR 445
Score = 67.4 bits (163), Expect = 2e-09
Identities = 59/198 (29%), Positives = 89/198 (44%), Gaps = 1/198 (0%)
Frame = -3
Query: 656 NVVSWTSLLSGYCKAGDMEAAKVLFDGMKER-NLFSWNVMIGGYCQNRQPLLALELFREL 480
NV T ++ + A+ LFD R + F N MI + RQ A L+++L
Sbjct: 33 NVNILTKFITTCGQLSSTRHARHLFDNRSHRGDTFLCNSMIKSHVVMRQLADAFTLYKDL 92
Query: 479 QSGLCSFEPDEVTLVSIIPAIADMGALELGRWIHKYIQKKRMECMGSVSTALVDMYAKCG 300
+ C F PD T + A A+ G H ++ K VSTALVDMYAK G
Sbjct: 93 RRETC-FVPDNFTFTVLAKCCALRMAVWEGLETHGHVVKIGFCFDMYVSTALVDMYAKFG 151
Query: 299 DVDEAKRVFDGMRERAPSTWNAMINGLAVNGCAEEALDVFREMLSSGQCPNEVTMMGLLS 120
++ A++VF+ M +R+ +W A+I G G A +F+ M + + G +
Sbjct: 152 NLGLARKVFNDMPDRSLVSWTALIGGYVRRGDMGNAWFLFKLMPGRDSAAFNLLIDGYVK 211
Query: 119 ACNHGGLVDEGRRLFREM 66
G ++ R LF EM
Sbjct: 212 V----GDMESARSLFDEM 225
Score = 60.8 bits (146), Expect = 2e-07
Identities = 34/126 (26%), Positives = 64/126 (50%)
Frame = -3
Query: 641 TSLLSGYCKAGDMEAAKVLFDGMKERNLFSWNVMIGGYCQNRQPLLALELFRELQSGLCS 462
TSL+ Y K G++ A+ +F + ++ +WN +I G+ N ALE F E+Q
Sbjct: 336 TSLVDMYLKCGEISKARKVFSEIPKKETATWNALINGFAMNGLASEALEAFSEMQQE--G 393
Query: 461 FEPDEVTLVSIIPAIADMGALELGRWIHKYIQKKRMECMGSVSTALVDMYAKCGDVDEAK 282
+P+++T+ ++ A + G +E G+ K + + + LVD+ + G +DEA+
Sbjct: 394 IKPNDITMTGVLSACSHGGLVEEGKGQFKAMIESGLSPKIEHYGCLVDLLGRAGCLDEAE 453
Query: 281 RVFDGM 264
+ M
Sbjct: 454 NLIKSM 459
>emb|CAN70994.1| hypothetical protein VITISV_038698 [Vitis vinifera]
Length = 751
Score = 279 bits (714), Expect = 3e-73
Identities = 126/219 (57%), Positives = 175/219 (79%)
Frame = -3
Query: 659 RNVVSWTSLLSGYCKAGDMEAAKVLFDGMKERNLFSWNVMIGGYCQNRQPLLALELFREL 480
R+VVSWT ++ GY G++++A+ LFD M E+NLFSWN MI GY QN+QP AL+LF E+
Sbjct: 388 RSVVSWTIMIYGYSSNGNLDSARSLFDAMPEKNLFSWNAMISGYXQNKQPYEALKLFHEM 447
Query: 479 QSGLCSFEPDEVTLVSIIPAIADMGALELGRWIHKYIQKKRMECMGSVSTALVDMYAKCG 300
QS S EPDEVT+VS++PAIAD+GAL+LG W+H+++++K+++ +V TAL+DMYAKCG
Sbjct: 448 QS-TTSLEPDEVTIVSVLPAIADLGALDLGGWVHRFVRRKKLDRATNVGTALIDMYAKCG 506
Query: 299 DVDEAKRVFDGMRERAPSTWNAMINGLAVNGCAEEALDVFREMLSSGQCPNEVTMMGLLS 120
++ +++ VFD M E+ ++WNA+IN A+NG A+EAL +F EM G PNE+TM+G+LS
Sbjct: 507 EIVKSRGVFDNMPEKETASWNALINAFAINGRAKEALGLFMEMNHKGFMPNEITMIGVLS 566
Query: 119 ACNHGGLVDEGRRLFREMEIYGIEPKVEHYGCMVDLLGR 3
ACNH GLV+EG+R F+ ME +G+ PK+EHYGCMVDLLGR
Sbjct: 567 ACNHSGLVEEGKRWFKAMEEFGLTPKIEHYGCMVDLLGR 605
Score = 86.3 bits (212), Expect = 5e-15
Identities = 59/186 (31%), Positives = 97/186 (52%), Gaps = 1/186 (0%)
Frame = -3
Query: 641 TSLLSGYCKAGDMEAAKVLFDGMKERNLFSWNVMIGGYCQNRQPLLALELFRELQSGLCS 462
T+L+ Y K G M+ A+ LFD M +R+ SW +IGGY ++ A +LF ++
Sbjct: 301 TALVDMYAKFGKMDCARKLFDEMIDRSQVSWTALIGGYVRSGDMDNAGKLFDQM------ 354
Query: 461 FEPDEVTLVSIIPAIADMGALELGRWIHKYIQKKRMECMGSVSTALVDMYAKCGDVDEAK 282
E D ++I A +G + R + + ++ + T ++ Y+ G++D A+
Sbjct: 355 IEKDSAAFNTMIDAYVKLGDMCSARKLFDEMPERSVVSW----TIMIYGYSSNGNLDSAR 410
Query: 281 RVFDGMRERAPSTWNAMINGLAVNGCAEEALDVFREMLSSGQC-PNEVTMMGLLSACNHG 105
+FD M E+ +WNAMI+G N EAL +F EM S+ P+EVT++ +L A
Sbjct: 411 SLFDAMPEKNLFSWNAMISGYXQNKQPYEALKLFHEMQSTTSLEPDEVTIVSVLPAIADL 470
Query: 104 GLVDEG 87
G +D G
Sbjct: 471 GALDLG 476
Score = 69.7 bits (169), Expect = 5e-10
Identities = 55/178 (30%), Positives = 87/178 (48%), Gaps = 1/178 (0%)
Frame = -3
Query: 596 AKVLFDGMKERN-LFSWNVMIGGYCQNRQPLLALELFRELQSGLCSFEPDEVTLVSIIPA 420
A+ +FD R+ F N MI Y RQ + L+R+L+ SF PD T + +
Sbjct: 213 ARRMFDHRPHRDDAFLCNSMIKAYVGMRQYSESFALYRDLRRNT-SFTPDSFTFSVLAKS 271
Query: 419 IADMGALELGRWIHKYIQKKRMECMGSVSTALVDMYAKCGDVDEAKRVFDGMRERAPSTW 240
A A+ G+ IH ++ +TALVDMYAK G +D A+++FD M +R+ +W
Sbjct: 272 CALNMAIWEGQEIHSHVVAVGFCLDLYAATALVDMYAKFGKMDCARKLFDEMIDRSQVSW 331
Query: 239 NAMINGLAVNGCAEEALDVFREMLSSGQCPNEVTMMGLLSACNHGGLVDEGRRLFREM 66
A+I G +G + A +F +M+ + ++ A G + R+LF EM
Sbjct: 332 TALIGGYVRSGDMDNAGKLFDQMIEK----DSAAFNTMIDAYVKLGDMCSARKLFDEM 385
>ref|XP_002271824.1| PREDICTED: pentatricopeptide repeat-containing protein At2g44880
[Vitis vinifera] gi|297734603|emb|CBI16654.3| unnamed
protein product [Vitis vinifera]
Length = 577
Score = 278 bits (712), Expect = 5e-73
Identities = 126/219 (57%), Positives = 175/219 (79%)
Frame = -3
Query: 659 RNVVSWTSLLSGYCKAGDMEAAKVLFDGMKERNLFSWNVMIGGYCQNRQPLLALELFREL 480
R+VVSWT ++ GY G++++A+ LFD M E+NLFSWN MI GY QN+QP AL+LF E+
Sbjct: 214 RSVVSWTIMIYGYSSNGNLDSARSLFDAMPEKNLFSWNAMISGYRQNKQPYEALKLFHEM 273
Query: 479 QSGLCSFEPDEVTLVSIIPAIADMGALELGRWIHKYIQKKRMECMGSVSTALVDMYAKCG 300
QS S EPDEVT+VS++PAIAD+GAL+LG W+H+++++K+++ +V TAL+DMYAKCG
Sbjct: 274 QS-TTSLEPDEVTIVSVLPAIADLGALDLGGWVHRFVRRKKLDRATNVGTALIDMYAKCG 332
Query: 299 DVDEAKRVFDGMRERAPSTWNAMINGLAVNGCAEEALDVFREMLSSGQCPNEVTMMGLLS 120
++ +++ VFD M E+ ++WNA+IN A+NG A+EAL +F EM G PNE+TM+G+LS
Sbjct: 333 EIVKSRGVFDNMPEKETASWNALINAFAINGRAKEALGLFMEMNHKGFMPNEITMIGVLS 392
Query: 119 ACNHGGLVDEGRRLFREMEIYGIEPKVEHYGCMVDLLGR 3
ACNH GLV+EG+R F+ ME +G+ PK+EHYGCMVDLLGR
Sbjct: 393 ACNHSGLVEEGKRWFKAMEEFGLTPKIEHYGCMVDLLGR 431
Score = 86.3 bits (212), Expect = 5e-15
Identities = 59/186 (31%), Positives = 97/186 (52%), Gaps = 1/186 (0%)
Frame = -3
Query: 641 TSLLSGYCKAGDMEAAKVLFDGMKERNLFSWNVMIGGYCQNRQPLLALELFRELQSGLCS 462
T+L+ Y K G M+ A+ LFD M +R+ SW +IGGY ++ A +LF ++
Sbjct: 127 TALVDMYAKFGKMDCARKLFDEMIDRSQVSWTALIGGYVRSGDMDNAGKLFDQM------ 180
Query: 461 FEPDEVTLVSIIPAIADMGALELGRWIHKYIQKKRMECMGSVSTALVDMYAKCGDVDEAK 282
E D ++I A +G + R + + ++ + T ++ Y+ G++D A+
Sbjct: 181 IEKDSAAFNTMIDAYVKLGDMCSARKLFDEMPERSVVSW----TIMIYGYSSNGNLDSAR 236
Query: 281 RVFDGMRERAPSTWNAMINGLAVNGCAEEALDVFREMLSSGQC-PNEVTMMGLLSACNHG 105
+FD M E+ +WNAMI+G N EAL +F EM S+ P+EVT++ +L A
Sbjct: 237 SLFDAMPEKNLFSWNAMISGYRQNKQPYEALKLFHEMQSTTSLEPDEVTIVSVLPAIADL 296
Query: 104 GLVDEG 87
G +D G
Sbjct: 297 GALDLG 302
Score = 69.7 bits (169), Expect = 5e-10
Identities = 55/178 (30%), Positives = 87/178 (48%), Gaps = 1/178 (0%)
Frame = -3
Query: 596 AKVLFDGMKERN-LFSWNVMIGGYCQNRQPLLALELFRELQSGLCSFEPDEVTLVSIIPA 420
A+ +FD R+ F N MI Y RQ + L+R+L+ SF PD T + +
Sbjct: 39 ARRMFDHRPHRDDAFLCNSMIKAYVGMRQYSESFALYRDLRRNT-SFTPDSFTFSVLAKS 97
Query: 419 IADMGALELGRWIHKYIQKKRMECMGSVSTALVDMYAKCGDVDEAKRVFDGMRERAPSTW 240
A A+ G+ IH ++ +TALVDMYAK G +D A+++FD M +R+ +W
Sbjct: 98 CALNMAIWEGQEIHSHVVAVGFCLDLYAATALVDMYAKFGKMDCARKLFDEMIDRSQVSW 157
Query: 239 NAMINGLAVNGCAEEALDVFREMLSSGQCPNEVTMMGLLSACNHGGLVDEGRRLFREM 66
A+I G +G + A +F +M+ + ++ A G + R+LF EM
Sbjct: 158 TALIGGYVRSGDMDNAGKLFDQMIEK----DSAAFNTMIDAYVKLGDMCSARKLFDEM 211
>ref|XP_002880144.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata] gi|297325983|gb|EFH56403.1|
pentatricopeptide repeat-containing protein [Arabidopsis
lyrata subsp. lyrata]
Length = 555
Score = 263 bits (671), Expect = 3e-68
Identities = 116/219 (52%), Positives = 171/219 (78%)
Frame = -3
Query: 659 RNVVSWTSLLSGYCKAGDMEAAKVLFDGMKERNLFSWNVMIGGYCQNRQPLLALELFREL 480
+ V++WT+++ GYC + D+++A+ LFD M ERNL SWN MIGGYCQN+QP A+ LF+E+
Sbjct: 205 KTVITWTTMIHGYCNSNDIDSARKLFDAMPERNLVSWNTMIGGYCQNKQPQEAIRLFQEM 264
Query: 479 QSGLCSFEPDEVTLVSIIPAIADMGALELGRWIHKYIQKKRMECMGSVSTALVDMYAKCG 300
Q+ S +PD+VT++S++PAI+D GAL LG W H ++Q+K ++ V TA++DMY+KCG
Sbjct: 265 QA-TTSLDPDDVTILSVLPAISDTGALSLGEWCHCFVQRKNLDKKVKVCTAILDMYSKCG 323
Query: 299 DVDEAKRVFDGMRERAPSTWNAMINGLAVNGCAEEALDVFREMLSSGQCPNEVTMMGLLS 120
++++AKR+FD M E+ ++WNAMI+G A+NG A ALD+F M + + P+E+TM+ ++S
Sbjct: 324 EIEKAKRIFDEMPEKQVASWNAMIHGYALNGNAHAALDLFLTM-AKEEKPDEITMLAVIS 382
Query: 119 ACNHGGLVDEGRRLFREMEIYGIEPKVEHYGCMVDLLGR 3
ACNHGGLV+EGR+ F+ M +G+ K+EHYGCMVDLLGR
Sbjct: 383 ACNHGGLVEEGRKWFQMMRKFGLNAKIEHYGCMVDLLGR 421
Score = 71.6 bits (174), Expect = 1e-10
Identities = 44/148 (29%), Positives = 76/148 (51%)
Frame = -3
Query: 641 TSLLSGYCKAGDMEAAKVLFDGMKERNLFSWNVMIGGYCQNRQPLLALELFRELQSGLCS 462
T++L Y K G++E AK +FD M E+ + SWN MI GY N AL+LF +
Sbjct: 313 TAILDMYSKCGEIEKAKRIFDEMPEKQVASWNAMIHGYALNGNAHAALDLFLTMAK---E 369
Query: 461 FEPDEVTLVSIIPAIADMGALELGRWIHKYIQKKRMECMGSVSTALVDMYAKCGDVDEAK 282
+PDE+T++++I A G +E GR + ++K + +VD+ + G++ +A+
Sbjct: 370 EKPDEITMLAVISACNHGGLVEEGRKWFQMMRKFGLNAKIEHYGCMVDLLGRAGNLKQAE 429
Query: 281 RVFDGMRERAPSTWNAMINGLAVNGCAE 198
+ M P N +I ++ C +
Sbjct: 430 HLITNM----PFKPNGIILSSFLSACGQ 453
Score = 66.6 bits (161), Expect = 4e-09
Identities = 58/198 (29%), Positives = 87/198 (43%), Gaps = 1/198 (0%)
Frame = -3
Query: 656 NVVSWTSLLSGYCKAGDMEAAKVLFDGMKER-NLFSWNVMIGGYCQNRQPLLALELFREL 480
NV +T L A + A+ LFD R + F N MI Y + R + +R+L
Sbjct: 9 NVQIFTKFLVISASAVGIGYARKLFDQRPHREDSFLCNSMIKAYLETRHYNDSFAFYRDL 68
Query: 479 QSGLCSFEPDEVTLVSIIPAIADMGALELGRWIHKYIQKKRMECMGSVSTALVDMYAKCG 300
+ C PD T ++ + + G +H I + VST +VDMYAK G
Sbjct: 69 RKETC-LAPDNFTFTTMTKSCTLSMCVYQGLQLHSQIWRSGFCADMYVSTGVVDMYAKFG 127
Query: 299 DVDEAKRVFDGMRERAPSTWNAMINGLAVNGCAEEALDVFREMLSSGQCPNEVTMMGLLS 120
+ A+ VFD M +R+ +W A+I G G + A +F +M Q + V ++
Sbjct: 128 KMGCARNVFDEMPQRSEVSWTALICGYVRFGELDLASKLFDQM---PQVKDVVIYNAMMD 184
Query: 119 ACNHGGLVDEGRRLFREM 66
G + RRLF EM
Sbjct: 185 GFVKSGDMTSARRLFDEM 202